Query 020566
Match_columns 324
No_of_seqs 250 out of 1366
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.3E-51 2.9E-56 388.1 24.1 232 79-318 1-244 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-49 2.3E-54 370.5 23.0 217 74-296 7-232 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 9.1E-47 2E-51 344.7 18.1 184 88-287 11-196 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 6.8E-46 1.5E-50 350.3 21.7 207 81-295 1-220 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.9E-45 4.1E-50 351.2 24.3 210 78-295 12-237 (346)
6 PRK10625 tas putative aldo-ket 100.0 1E-44 2.2E-49 346.2 24.9 208 79-295 1-248 (346)
7 PLN02587 L-galactose dehydroge 100.0 1.1E-44 2.5E-49 341.5 21.9 206 81-292 1-216 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-43 2.3E-48 329.5 22.6 207 81-295 1-213 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 1.9E-43 4.1E-48 323.3 17.7 193 79-287 6-214 (300)
10 PRK14863 bifunctional regulato 100.0 3.8E-43 8.3E-48 327.8 17.9 191 88-290 2-201 (292)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.5E-42 9.7E-47 316.9 21.1 183 90-289 2-187 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.7E-42 1.5E-46 317.2 19.2 197 93-296 1-203 (283)
13 PRK10376 putative oxidoreducta 100.0 3.3E-40 7.2E-45 307.9 22.9 198 77-286 5-218 (290)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.2E-40 6.9E-45 305.8 19.1 183 86-287 10-193 (275)
15 COG4989 Predicted oxidoreducta 100.0 1.4E-38 3.1E-43 280.6 13.3 204 79-290 1-219 (298)
16 KOG1576 Predicted oxidoreducta 100.0 5.3E-37 1.1E-41 272.6 15.1 225 78-321 21-259 (342)
17 COG1453 Predicted oxidoreducta 100.0 3E-36 6.5E-41 279.1 16.9 205 79-292 1-214 (391)
18 KOG3023 Glutamate-cysteine lig 98.1 7.9E-06 1.7E-10 72.8 6.9 72 209-281 155-227 (285)
19 PF07021 MetW: Methionine bios 91.8 3.5 7.7E-05 36.2 11.6 151 115-287 5-172 (193)
20 PRK00208 thiG thiazole synthas 91.3 11 0.00024 34.3 15.6 112 166-280 66-181 (250)
21 cd03319 L-Ala-DL-Glu_epimerase 90.6 7.5 0.00016 36.5 13.6 155 109-286 134-291 (316)
22 cd04728 ThiG Thiazole synthase 88.1 21 0.00044 32.7 17.1 112 166-280 66-181 (248)
23 cd03315 MLE_like Muconate lact 87.5 20 0.00044 32.6 13.8 155 109-286 85-243 (265)
24 cd03174 DRE_TIM_metallolyase D 87.5 3.5 7.5E-05 37.4 8.7 106 172-281 15-135 (265)
25 PRK06740 histidinol-phosphatas 85.6 34 0.00074 32.6 15.2 97 181-278 157-288 (331)
26 PRK08609 hypothetical protein; 84.7 33 0.00072 35.3 14.9 150 113-278 351-522 (570)
27 PRK08392 hypothetical protein; 84.1 29 0.00063 30.6 14.8 150 112-278 15-178 (215)
28 TIGR01228 hutU urocanate hydra 83.8 2.6 5.7E-05 41.9 6.1 126 116-254 108-257 (545)
29 PRK05414 urocanate hydratase; 83.6 2.7 6E-05 42.0 6.2 126 116-254 117-266 (556)
30 cd03316 MR_like Mandelate race 80.8 53 0.0011 31.2 15.4 151 109-282 139-299 (357)
31 COG2987 HutU Urocanate hydrata 78.7 3.7 7.9E-05 40.5 5.1 58 186-251 204-261 (561)
32 TIGR00190 thiC thiamine biosyn 77.8 71 0.0015 31.3 13.4 147 108-291 74-229 (423)
33 PF01175 Urocanase: Urocanase; 76.5 5.2 0.00011 40.1 5.5 125 115-258 106-261 (546)
34 PRK05692 hydroxymethylglutaryl 76.3 25 0.00055 32.7 9.9 108 173-283 23-142 (287)
35 TIGR01928 menC_lowGC/arch o-su 76.1 71 0.0015 30.1 14.7 153 109-286 132-286 (324)
36 PRK14017 galactonate dehydrata 76.1 73 0.0016 30.8 13.5 154 109-282 124-287 (382)
37 cd03322 rpsA The starvation se 74.8 82 0.0018 30.2 13.8 146 109-282 126-273 (361)
38 cd06543 GH18_PF-ChiA-like PF-C 74.2 77 0.0017 29.7 13.3 183 93-287 71-266 (294)
39 PF05690 ThiG: Thiazole biosyn 74.0 69 0.0015 29.2 11.5 164 92-281 9-182 (247)
40 COG1140 NarY Nitrate reductase 73.8 1.6 3.4E-05 42.0 1.1 55 222-276 263-317 (513)
41 TIGR01182 eda Entner-Doudoroff 72.8 18 0.00038 32.1 7.5 88 174-279 18-106 (204)
42 PRK07945 hypothetical protein; 70.4 1E+02 0.0022 29.4 17.7 150 111-278 111-288 (335)
43 PRK14461 ribosomal RNA large s 68.2 61 0.0013 31.5 10.6 94 197-291 232-364 (371)
44 PRK06015 keto-hydroxyglutarate 67.6 22 0.00048 31.4 7.0 88 174-279 14-102 (201)
45 PRK13352 thiamine biosynthesis 67.5 1.3E+02 0.0029 29.6 13.8 148 108-292 74-233 (431)
46 cd04740 DHOD_1B_like Dihydroor 67.3 1.1E+02 0.0023 28.4 14.9 153 109-275 100-286 (296)
47 cd07944 DRE_TIM_HOA_like 4-hyd 66.9 56 0.0012 30.0 9.9 105 172-280 16-128 (266)
48 TIGR01060 eno phosphopyruvate 66.4 75 0.0016 31.4 11.2 127 174-319 263-405 (425)
49 cd00423 Pterin_binding Pterin 66.1 69 0.0015 29.2 10.3 104 173-283 21-129 (258)
50 PRK13796 GTPase YqeH; Provisio 66.0 1.2E+02 0.0026 29.3 12.3 124 108-242 54-180 (365)
51 cd00308 enolase_like Enolase-s 65.8 49 0.0011 29.4 9.1 87 194-286 120-208 (229)
52 cd07943 DRE_TIM_HOA 4-hydroxy- 65.7 63 0.0014 29.5 10.0 106 172-280 18-131 (263)
53 cd07939 DRE_TIM_NifV Streptomy 65.0 88 0.0019 28.4 10.8 99 172-278 16-127 (259)
54 PTZ00081 enolase; Provisional 64.9 73 0.0016 31.7 10.7 128 173-319 281-424 (439)
55 PRK00077 eno enolase; Provisio 64.3 90 0.0019 30.8 11.3 128 173-319 261-404 (425)
56 PRK13958 N-(5'-phosphoribosyl) 63.4 29 0.00063 30.7 7.0 67 186-256 17-84 (207)
57 cd07948 DRE_TIM_HCS Saccharomy 62.2 93 0.002 28.6 10.3 102 172-281 18-132 (262)
58 PF01081 Aldolase: KDPG and KH 61.4 24 0.00051 31.1 5.9 87 175-279 19-106 (196)
59 COG1748 LYS9 Saccharopine dehy 61.1 45 0.00098 32.6 8.3 81 111-205 79-159 (389)
60 cd03321 mandelate_racemase Man 60.9 1.6E+02 0.0034 28.2 12.5 149 110-281 142-295 (355)
61 COG0135 TrpF Phosphoribosylant 60.9 64 0.0014 28.7 8.6 83 187-280 19-104 (208)
62 PRK07328 histidinol-phosphatas 60.9 1.3E+02 0.0029 27.4 17.7 98 180-278 95-225 (269)
63 PRK13753 dihydropteroate synth 60.8 1.4E+02 0.0031 27.8 11.8 102 173-283 22-128 (279)
64 PRK06552 keto-hydroxyglutarate 60.6 32 0.00069 30.6 6.8 88 174-279 23-114 (213)
65 PRK01222 N-(5'-phosphoribosyl) 60.0 65 0.0014 28.5 8.6 67 186-256 19-86 (210)
66 PLN00191 enolase 59.3 97 0.0021 31.0 10.5 136 173-319 295-436 (457)
67 TIGR03822 AblA_like_2 lysine-2 59.2 1.6E+02 0.0035 27.8 14.6 123 108-243 119-252 (321)
68 PRK07114 keto-hydroxyglutarate 58.2 1.1E+02 0.0024 27.5 9.7 90 174-278 25-116 (222)
69 cd03318 MLE Muconate Lactonizi 57.7 28 0.0006 33.4 6.3 81 195-281 215-297 (365)
70 PRK05588 histidinol-phosphatas 57.6 1.5E+02 0.0032 26.8 14.6 158 111-281 16-216 (255)
71 PRK04452 acetyl-CoA decarbonyl 56.1 1.2E+02 0.0025 28.9 10.0 96 184-284 83-185 (319)
72 TIGR02026 BchE magnesium-proto 55.3 1.4E+02 0.003 30.1 11.1 65 209-275 322-392 (497)
73 PRK00730 rnpA ribonuclease P; 55.0 77 0.0017 26.3 7.6 62 157-222 47-110 (138)
74 TIGR01278 DPOR_BchB light-inde 54.7 1.6E+02 0.0035 29.8 11.5 111 174-284 96-243 (511)
75 PLN02746 hydroxymethylglutaryl 54.1 78 0.0017 30.5 8.6 102 178-281 69-182 (347)
76 PF00809 Pterin_bind: Pterin b 53.9 29 0.00064 30.6 5.4 91 186-283 28-125 (210)
77 PRK15072 bifunctional D-altron 53.8 85 0.0019 30.7 9.1 83 194-282 232-316 (404)
78 TIGR02534 mucon_cyclo muconate 53.7 34 0.00073 32.9 6.2 100 172-283 197-298 (368)
79 PRK08776 cystathionine gamma-s 53.2 2E+02 0.0043 28.1 11.6 88 195-287 100-188 (405)
80 TIGR01502 B_methylAsp_ase meth 53.1 77 0.0017 31.2 8.6 107 172-283 244-357 (408)
81 COG2022 ThiG Uncharacterized e 53.0 60 0.0013 29.5 7.0 112 167-281 74-189 (262)
82 PRK10605 N-ethylmaleimide redu 52.6 2.2E+02 0.0048 27.4 12.5 76 173-253 245-320 (362)
83 TIGR02660 nifV_homocitr homoci 51.6 1.7E+02 0.0037 28.2 10.6 99 172-278 19-130 (365)
84 PRK00164 moaA molybdenum cofac 51.5 2.1E+02 0.0046 26.8 16.5 154 107-277 48-226 (331)
85 cd06543 GH18_PF-ChiA-like PF-C 51.5 1.9E+02 0.0041 27.1 10.6 86 172-257 86-181 (294)
86 TIGR00676 fadh2 5,10-methylene 51.3 2E+02 0.0043 26.4 15.2 156 111-288 15-193 (272)
87 cd03313 enolase Enolase: Enola 51.1 2.1E+02 0.0046 28.0 11.4 128 173-319 261-404 (408)
88 TIGR03217 4OH_2_O_val_ald 4-hy 50.9 1.5E+02 0.0032 28.3 10.0 44 234-279 89-132 (333)
89 PF03102 NeuB: NeuB family; I 50.3 1.3E+02 0.0029 27.3 9.1 118 107-240 52-187 (241)
90 PRK08195 4-hyroxy-2-oxovalerat 49.8 1.4E+02 0.003 28.5 9.6 104 171-280 20-134 (337)
91 PRK13361 molybdenum cofactor b 49.8 2.3E+02 0.005 26.7 14.1 120 107-243 44-177 (329)
92 cd03327 MR_like_2 Mandelate ra 49.0 2.4E+02 0.0052 26.7 15.4 150 109-281 120-280 (341)
93 cd03323 D-glucarate_dehydratas 48.6 1E+02 0.0022 30.1 8.6 148 109-283 168-321 (395)
94 TIGR02080 O_succ_thio_ly O-suc 48.5 2.5E+02 0.0053 27.2 11.3 88 195-287 91-179 (382)
95 cd00739 DHPS DHPS subgroup of 48.4 2.2E+02 0.0047 26.1 12.7 102 173-281 21-127 (257)
96 cd02932 OYE_YqiM_FMN Old yello 48.2 2.5E+02 0.0053 26.6 11.8 41 213-254 279-320 (336)
97 PRK04390 rnpA ribonuclease P; 47.6 1.4E+02 0.003 23.9 7.9 65 156-222 44-110 (120)
98 TIGR03822 AblA_like_2 lysine-2 47.3 2.5E+02 0.0054 26.5 12.1 22 265-286 218-239 (321)
99 PF06174 DUF987: Protein of un 47.1 5.7 0.00012 28.0 -0.2 9 5-13 35-43 (66)
100 PRK07259 dihydroorotate dehydr 47.0 2.4E+02 0.0052 26.1 13.2 153 109-275 102-289 (301)
101 TIGR01496 DHPS dihydropteroate 46.6 2.3E+02 0.005 25.9 12.1 100 173-281 20-125 (257)
102 PLN02363 phosphoribosylanthran 46.5 70 0.0015 29.4 6.7 75 174-256 56-131 (256)
103 TIGR01290 nifB nitrogenase cof 46.3 2.2E+02 0.0048 28.3 10.8 111 172-286 59-199 (442)
104 PRK13803 bifunctional phosphor 46.3 1.4E+02 0.003 31.1 9.6 88 187-278 20-108 (610)
105 PRK03031 rnpA ribonuclease P; 46.0 1.3E+02 0.0029 24.0 7.7 65 156-222 47-114 (122)
106 COG3623 SgaU Putative L-xylulo 45.4 37 0.00081 30.9 4.6 61 86-147 65-136 (287)
107 cd01948 EAL EAL domain. This d 45.1 1.5E+02 0.0032 25.7 8.5 101 176-281 98-209 (240)
108 PF00682 HMGL-like: HMGL-like 44.9 2E+02 0.0043 25.5 9.4 98 173-277 11-124 (237)
109 PF13378 MR_MLE_C: Enolase C-t 44.7 27 0.00058 27.1 3.3 51 231-282 3-54 (111)
110 cd03317 NAAAR N-acylamino acid 44.1 93 0.002 29.6 7.6 149 111-286 139-291 (354)
111 cd00452 KDPG_aldolase KDPG and 44.0 2.1E+02 0.0045 24.6 15.7 110 109-253 14-123 (190)
112 cd03314 MAL Methylaspartate am 43.7 2E+02 0.0044 27.9 9.8 104 174-282 210-320 (369)
113 cd03325 D-galactonate_dehydrat 43.5 3E+02 0.0064 26.2 15.9 82 194-281 202-285 (352)
114 PRK00499 rnpA ribonuclease P; 43.3 1.6E+02 0.0035 23.2 7.7 64 156-222 38-104 (114)
115 PRK06361 hypothetical protein; 42.2 2.3E+02 0.005 24.6 14.3 154 112-283 11-170 (212)
116 PRK01313 rnpA ribonuclease P; 42.1 1.6E+02 0.0034 24.1 7.5 63 156-221 47-113 (129)
117 COG4464 CapC Capsular polysacc 41.9 1.7E+02 0.0038 26.3 8.1 43 105-147 14-61 (254)
118 PLN02540 methylenetetrahydrofo 41.0 4.3E+02 0.0093 27.3 17.1 151 111-276 15-197 (565)
119 TIGR03471 HpnJ hopanoid biosyn 41.0 3E+02 0.0065 27.3 10.9 65 209-275 322-392 (472)
120 TIGR00048 radical SAM enzyme, 40.7 3E+02 0.0066 26.4 10.5 96 197-292 219-346 (355)
121 COG0820 Predicted Fe-S-cluster 40.6 2.5E+02 0.0054 27.1 9.6 88 197-285 216-330 (349)
122 TIGR00735 hisF imidazoleglycer 40.2 2.8E+02 0.0061 25.0 14.2 89 183-277 161-253 (254)
123 PRK14457 ribosomal RNA large s 40.1 3.4E+02 0.0075 26.0 12.2 108 178-285 196-330 (345)
124 TIGR00677 fadh2_euk methylenet 40.0 3.1E+02 0.0067 25.4 15.2 150 111-277 16-190 (281)
125 PRK14462 ribosomal RNA large s 39.9 3.5E+02 0.0076 26.1 10.7 88 198-285 225-338 (356)
126 PRK09058 coproporphyrinogen II 39.7 3.9E+02 0.0085 26.5 11.5 28 172-200 226-253 (449)
127 PF00697 PRAI: N-(5'phosphorib 39.6 2.5E+02 0.0055 24.3 9.1 81 185-278 14-96 (197)
128 cd00740 MeTr MeTr subgroup of 39.5 3E+02 0.0065 25.1 11.6 103 173-282 23-127 (252)
129 TIGR00126 deoC deoxyribose-pho 39.5 2.5E+02 0.0054 24.9 9.0 71 108-193 129-205 (211)
130 TIGR02026 BchE magnesium-proto 39.2 4.1E+02 0.009 26.7 11.7 70 173-246 222-298 (497)
131 PRK08195 4-hyroxy-2-oxovalerat 39.1 3.5E+02 0.0076 25.8 16.9 24 108-131 22-45 (337)
132 COG0159 TrpA Tryptophan syntha 38.8 3.1E+02 0.0068 25.4 9.6 19 265-283 138-156 (265)
133 PRK11840 bifunctional sulfur c 38.7 3.6E+02 0.0078 25.8 14.7 84 167-253 141-224 (326)
134 TIGR01856 hisJ_fam histidinol 38.7 3E+02 0.0064 24.8 13.8 38 241-278 194-233 (253)
135 CHL00076 chlB photochlorophyll 38.5 4.4E+02 0.0095 26.7 13.2 111 174-284 96-248 (513)
136 PRK02910 light-independent pro 38.4 4.3E+02 0.0092 26.8 11.6 110 174-284 96-243 (519)
137 COG2102 Predicted ATPases of P 38.3 54 0.0012 29.5 4.5 89 209-317 75-168 (223)
138 PRK02901 O-succinylbenzoate sy 38.3 2.7E+02 0.0059 26.4 9.6 82 195-286 162-244 (327)
139 PRK06256 biotin synthase; Vali 38.2 2.8E+02 0.0061 26.0 9.8 118 108-243 91-223 (336)
140 PF14387 DUF4418: Domain of un 38.0 15 0.00033 29.8 0.9 25 3-27 31-56 (124)
141 cd04742 NPD_FabD 2-Nitropropan 37.7 1E+02 0.0022 30.5 6.7 65 217-282 32-103 (418)
142 PRK11613 folP dihydropteroate 37.3 3.1E+02 0.0067 25.6 9.6 100 174-281 36-140 (282)
143 COG2069 CdhD CO dehydrogenase/ 37.1 3.7E+02 0.008 25.5 9.9 94 184-284 158-261 (403)
144 PRK10558 alpha-dehydro-beta-de 37.0 90 0.002 28.6 5.9 68 216-284 10-79 (256)
145 cd07948 DRE_TIM_HCS Saccharomy 36.2 3.4E+02 0.0074 24.8 11.3 24 109-132 20-43 (262)
146 PRK07811 cystathionine gamma-s 36.2 3.5E+02 0.0075 26.1 10.2 103 180-288 87-190 (388)
147 PLN02775 Probable dihydrodipic 36.1 2.1E+02 0.0046 26.8 8.2 71 182-257 68-138 (286)
148 PLN02428 lipoic acid synthase 36.0 4.1E+02 0.0088 25.6 15.6 160 107-284 129-324 (349)
149 PRK08045 cystathionine gamma-s 36.0 3E+02 0.0066 26.6 9.8 76 212-287 104-180 (386)
150 PRK02399 hypothetical protein; 35.9 78 0.0017 31.1 5.5 60 178-247 200-273 (406)
151 PRK05283 deoxyribose-phosphate 35.8 2.7E+02 0.0059 25.6 8.8 77 109-195 144-227 (257)
152 TIGR01428 HAD_type_II 2-haloal 35.7 1.2E+02 0.0025 25.9 6.3 95 178-275 61-163 (198)
153 PRK08247 cystathionine gamma-s 35.6 2.5E+02 0.0055 26.7 9.1 64 225-288 116-180 (366)
154 TIGR01927 menC_gamma/gm+ o-suc 35.6 2.5E+02 0.0055 26.2 8.9 86 194-287 183-270 (307)
155 PRK09427 bifunctional indole-3 35.5 2.4E+02 0.0052 28.2 9.1 66 186-257 273-339 (454)
156 COG0422 ThiC Thiamine biosynth 35.5 4.4E+02 0.0095 25.9 14.3 147 108-292 75-231 (432)
157 PRK05628 coproporphyrinogen II 35.4 4.1E+02 0.0088 25.5 10.8 28 172-200 171-198 (375)
158 PRK09248 putative hydrolase; V 35.1 3.3E+02 0.0071 24.3 15.8 85 191-279 94-190 (246)
159 cd01965 Nitrogenase_MoFe_beta_ 34.9 4.5E+02 0.0096 25.8 11.4 106 132-248 61-185 (428)
160 PRK04820 rnpA ribonuclease P; 34.7 2.6E+02 0.0056 23.3 7.8 64 157-222 49-114 (145)
161 PRK08861 cystathionine gamma-s 34.6 4.4E+02 0.0095 25.6 11.8 91 194-289 92-183 (388)
162 COG1149 MinD superfamily P-loo 34.3 84 0.0018 29.3 5.2 80 194-285 164-250 (284)
163 TIGR02090 LEU1_arch isopropylm 34.2 3.2E+02 0.007 26.3 9.6 99 172-278 18-129 (363)
164 PRK14463 ribosomal RNA large s 34.0 4.3E+02 0.0094 25.3 11.0 98 197-294 211-340 (349)
165 PRK03459 rnpA ribonuclease P; 33.9 2.4E+02 0.0052 22.7 7.3 64 156-222 48-114 (122)
166 TIGR00381 cdhD CO dehydrogenas 33.9 4.6E+02 0.01 25.7 11.3 95 187-288 150-254 (389)
167 PRK05718 keto-hydroxyglutarate 33.9 1.8E+02 0.004 25.8 7.2 87 174-278 25-112 (212)
168 COG2355 Zn-dependent dipeptida 33.5 1.1E+02 0.0024 29.1 5.9 84 198-283 97-226 (313)
169 cd03324 rTSbeta_L-fuconate_deh 33.3 4.8E+02 0.01 25.6 15.5 150 109-281 196-352 (415)
170 cd00959 DeoC 2-deoxyribose-5-p 33.0 2.8E+02 0.006 24.1 8.2 69 108-191 128-202 (203)
171 PLN02444 HMP-P synthase 33.0 5.7E+02 0.012 26.4 12.9 145 108-292 234-388 (642)
172 PRK11858 aksA trans-homoaconit 32.8 3.7E+02 0.008 26.0 9.7 100 172-279 22-134 (378)
173 PF13407 Peripla_BP_4: Peripla 32.7 2E+02 0.0042 25.2 7.4 71 176-253 14-88 (257)
174 cd02930 DCR_FMN 2,4-dienoyl-Co 32.4 4.5E+02 0.0097 25.0 14.0 80 173-254 221-306 (353)
175 TIGR03247 glucar-dehydr glucar 32.2 2E+02 0.0043 28.7 7.8 85 196-282 252-337 (441)
176 PRK01492 rnpA ribonuclease P; 32.0 2.6E+02 0.0057 22.3 7.5 62 157-220 47-114 (118)
177 PRK07534 methionine synthase I 31.9 4.6E+02 0.01 25.0 15.8 171 104-282 38-240 (336)
178 TIGR01329 cysta_beta_ly_E cyst 31.6 3.9E+02 0.0085 25.7 9.7 54 233-286 119-173 (378)
179 TIGR02370 pyl_corrinoid methyl 31.5 3.5E+02 0.0075 23.5 8.9 150 108-275 9-164 (197)
180 PRK15108 biotin synthase; Prov 31.5 4.7E+02 0.01 25.0 13.2 110 173-286 76-196 (345)
181 PRK14464 ribosomal RNA large s 31.1 4.2E+02 0.009 25.5 9.6 87 209-295 225-333 (344)
182 PF05049 IIGP: Interferon-indu 30.9 1.9E+02 0.0041 28.2 7.2 89 122-217 109-214 (376)
183 PRK06294 coproporphyrinogen II 30.9 4.5E+02 0.0098 25.2 10.0 62 172-235 166-243 (370)
184 PRK14453 chloramphenicol/florf 30.7 4.9E+02 0.011 25.0 10.5 94 192-285 203-330 (347)
185 TIGR03239 GarL 2-dehydro-3-deo 30.6 1.3E+02 0.0029 27.4 5.9 66 218-284 5-72 (249)
186 PRK15440 L-rhamnonate dehydrat 30.6 1.6E+02 0.0034 28.8 6.8 81 194-280 234-318 (394)
187 PRK07535 methyltetrahydrofolat 30.6 4.3E+02 0.0092 24.2 10.8 99 174-281 23-123 (261)
188 cd02933 OYE_like_FMN Old yello 30.3 4.8E+02 0.01 24.8 12.3 16 116-131 157-172 (338)
189 PF14871 GHL6: Hypothetical gl 30.3 52 0.0011 27.0 2.9 24 261-284 44-67 (132)
190 cd01321 ADGF Adenosine deamina 29.7 5E+02 0.011 24.8 13.9 17 263-279 235-251 (345)
191 PF00682 HMGL-like: HMGL-like 29.6 3.9E+02 0.0085 23.5 15.2 121 108-243 11-144 (237)
192 PRK14465 ribosomal RNA large s 29.5 3.9E+02 0.0084 25.7 9.1 89 197-285 216-329 (342)
193 PRK14456 ribosomal RNA large s 29.3 3.8E+02 0.0083 26.0 9.1 78 208-285 260-353 (368)
194 PF01053 Cys_Met_Meta_PP: Cys/ 29.2 2.1E+02 0.0045 27.9 7.3 84 209-292 104-189 (386)
195 PRK14455 ribosomal RNA large s 29.1 3.7E+02 0.0079 25.9 9.0 89 197-285 223-337 (356)
196 PLN03228 methylthioalkylmalate 29.1 3.4E+02 0.0073 27.6 8.9 103 172-282 102-230 (503)
197 PRK08248 O-acetylhomoserine am 28.8 5.7E+02 0.012 25.1 11.5 75 211-286 115-191 (431)
198 PRK00396 rnpA ribonuclease P; 28.6 3.2E+02 0.007 22.2 7.3 63 157-221 47-111 (130)
199 cd07943 DRE_TIM_HOA 4-hydroxy- 28.5 4.5E+02 0.0097 23.8 16.6 24 108-131 19-42 (263)
200 COG2089 SpsE Sialic acid synth 28.4 5.4E+02 0.012 24.7 11.4 116 107-242 86-223 (347)
201 COG2200 Rtn c-di-GMP phosphodi 28.3 3E+02 0.0065 24.9 7.9 102 175-281 101-213 (256)
202 PF09989 DUF2229: CoA enzyme a 28.1 3.8E+02 0.0082 23.9 8.3 33 248-280 186-218 (221)
203 PRK07535 methyltetrahydrofolat 27.9 4.7E+02 0.01 23.9 10.8 108 115-234 80-200 (261)
204 cd02801 DUS_like_FMN Dihydrour 27.9 4.1E+02 0.0088 23.1 9.6 132 109-254 65-213 (231)
205 COG0626 MetC Cystathionine bet 27.7 3.9E+02 0.0084 26.3 8.8 85 209-293 112-198 (396)
206 PRK14459 ribosomal RNA large s 27.7 5.8E+02 0.013 24.8 11.6 90 196-285 241-359 (373)
207 PF05913 DUF871: Bacterial pro 27.6 21 0.00046 34.4 0.2 154 109-291 12-185 (357)
208 PRK10128 2-keto-3-deoxy-L-rham 27.1 2E+02 0.0043 26.6 6.5 67 216-283 9-77 (267)
209 cd04731 HisF The cyclase subun 27.0 4.5E+02 0.0097 23.3 14.9 162 90-273 71-243 (243)
210 PRK09613 thiH thiamine biosynt 26.9 6.6E+02 0.014 25.2 10.7 109 172-283 114-241 (469)
211 PF00072 Response_reg: Respons 26.9 2.4E+02 0.0051 20.8 6.1 66 185-255 35-102 (112)
212 TIGR01862 N2-ase-Ialpha nitrog 26.3 5.9E+02 0.013 25.1 10.1 109 131-249 96-221 (443)
213 PRK08072 nicotinate-nucleotide 26.2 3.1E+02 0.0066 25.5 7.6 40 213-254 175-215 (277)
214 PRK07329 hypothetical protein; 26.2 4.8E+02 0.01 23.4 12.0 101 180-281 83-215 (246)
215 cd00248 Mth938-like Mth938-lik 26.0 2.3E+02 0.0049 22.2 5.8 51 231-282 37-87 (109)
216 PRK02714 O-succinylbenzoate sy 26.0 5.5E+02 0.012 24.0 14.1 154 111-286 120-277 (320)
217 cd03328 MR_like_3 Mandelate ra 26.0 5.8E+02 0.013 24.3 15.1 150 109-281 138-293 (352)
218 COG1104 NifS Cysteine sulfinat 25.9 2.6E+02 0.0056 27.4 7.2 81 209-289 101-186 (386)
219 PF07745 Glyco_hydro_53: Glyco 25.2 2.5E+02 0.0053 26.9 6.9 25 230-254 108-132 (332)
220 cd00614 CGS_like CGS_like: Cys 25.2 5.9E+02 0.013 24.1 10.8 56 233-288 113-169 (369)
221 TIGR00188 rnpA ribonuclease P 25.1 3.2E+02 0.007 21.1 7.3 62 156-220 41-104 (105)
222 PF13380 CoA_binding_2: CoA bi 25.0 1.9E+02 0.0041 22.8 5.2 18 262-279 90-107 (116)
223 PRK10128 2-keto-3-deoxy-L-rham 24.7 3.2E+02 0.0069 25.2 7.3 67 190-258 166-243 (267)
224 PF06792 UPF0261: Uncharacteri 24.6 1.3E+02 0.0029 29.5 5.0 60 180-249 201-274 (403)
225 TIGR03821 AblA_like_1 lysine-2 24.5 6E+02 0.013 24.0 13.2 122 108-243 125-258 (321)
226 PRK08249 cystathionine gamma-s 24.4 6.6E+02 0.014 24.4 10.2 56 232-287 136-192 (398)
227 PF01890 CbiG_C: Cobalamin syn 24.3 1.4E+02 0.003 24.0 4.3 24 260-283 44-67 (121)
228 PRK09284 thiamine biosynthesis 24.2 8.1E+02 0.017 25.3 12.8 146 108-293 229-384 (607)
229 PRK12928 lipoyl synthase; Prov 24.0 5.9E+02 0.013 23.7 13.1 161 107-283 86-280 (290)
230 TIGR00035 asp_race aspartate r 23.7 4.4E+02 0.0096 23.3 8.0 64 174-238 15-89 (229)
231 PRK00507 deoxyribose-phosphate 23.7 4.5E+02 0.0098 23.4 7.9 73 108-192 133-208 (221)
232 cd01573 modD_like ModD; Quinol 23.7 2.4E+02 0.0053 26.0 6.4 40 213-254 171-210 (272)
233 cd03320 OSBS o-Succinylbenzoat 23.6 2.9E+02 0.0062 25.0 6.9 86 194-286 153-239 (263)
234 KOG0369 Pyruvate carboxylase [ 23.5 8.2E+02 0.018 26.1 10.4 144 111-286 43-196 (1176)
235 TIGR00126 deoC deoxyribose-pho 23.2 5.3E+02 0.011 22.8 9.3 135 108-257 15-157 (211)
236 PRK01732 rnpA ribonuclease P; 23.2 3.8E+02 0.0082 21.2 7.7 64 156-221 45-110 (114)
237 cd02069 methionine_synthase_B1 23.1 5.3E+02 0.011 22.8 9.6 23 108-130 12-34 (213)
238 TIGR02814 pfaD_fam PfaD family 23.0 3.9E+02 0.0085 26.7 8.0 64 217-281 37-107 (444)
239 COG2159 Predicted metal-depend 22.7 4.2E+02 0.0092 24.6 7.9 98 186-286 55-169 (293)
240 PRK06176 cystathionine gamma-s 22.7 6.6E+02 0.014 24.1 9.5 53 234-286 123-176 (380)
241 PRK12613 galactose-6-phosphate 22.7 4.5E+02 0.0098 21.8 7.2 93 173-281 9-104 (141)
242 PF07994 NAD_binding_5: Myo-in 22.7 2.5E+02 0.0054 26.4 6.3 94 176-279 132-230 (295)
243 smart00052 EAL Putative diguan 22.7 4.1E+02 0.009 22.8 7.6 101 176-281 99-210 (241)
244 PRK09413 IS2 repressor TnpA; R 22.6 1.2E+02 0.0027 24.1 3.7 45 107-151 12-56 (121)
245 TIGR03128 RuMP_HxlA 3-hexulose 22.6 4.9E+02 0.011 22.3 9.2 87 185-279 17-107 (206)
246 PRK10508 hypothetical protein; 22.6 1.3E+02 0.0028 28.7 4.4 42 173-220 286-327 (333)
247 PRK05718 keto-hydroxyglutarate 22.5 4.8E+02 0.01 23.1 7.8 36 109-144 25-60 (212)
248 cd03770 SR_TndX_transposase Se 22.4 1.5E+02 0.0032 24.2 4.3 44 179-222 54-97 (140)
249 PRK10200 putative racemase; Pr 22.4 5.2E+02 0.011 23.0 8.2 69 174-243 15-94 (230)
250 COG2949 SanA Uncharacterized m 22.3 2.8E+02 0.006 24.9 6.0 112 160-282 62-181 (235)
251 TIGR00221 nagA N-acetylglucosa 22.3 7.2E+02 0.016 24.1 14.0 131 109-247 75-214 (380)
252 PRK02083 imidazole glycerol ph 22.3 5.7E+02 0.012 22.9 14.2 86 186-277 162-251 (253)
253 TIGR03217 4OH_2_O_val_ald 4-hy 22.2 6.8E+02 0.015 23.8 16.7 24 108-131 21-44 (333)
254 PRK00915 2-isopropylmalate syn 22.2 5.2E+02 0.011 26.2 9.0 102 172-282 22-140 (513)
255 PRK07810 O-succinylhomoserine 22.1 5.3E+02 0.011 25.1 8.8 57 232-288 142-199 (403)
256 PF00875 DNA_photolyase: DNA p 22.1 2.5E+02 0.0055 23.2 5.8 69 180-281 56-124 (165)
257 TIGR02811 formate_TAT formate 22.1 87 0.0019 22.5 2.4 14 17-30 8-23 (66)
258 PF01118 Semialdhyde_dh: Semia 22.0 1.2E+02 0.0026 23.9 3.6 27 109-135 75-101 (121)
259 PF15221 LEP503: Lens epitheli 21.9 48 0.001 22.8 1.0 21 79-99 15-35 (61)
260 PLN02438 inositol-3-phosphate 21.9 4.6E+02 0.0099 26.7 8.1 49 176-224 207-258 (510)
261 TIGR03597 GTPase_YqeH ribosome 21.8 7.1E+02 0.015 23.8 11.2 137 92-241 28-173 (360)
262 PRK08574 cystathionine gamma-s 21.7 6.8E+02 0.015 24.1 9.4 86 195-288 93-181 (385)
263 COG0800 Eda 2-keto-3-deoxy-6-p 21.7 3.5E+02 0.0076 24.2 6.6 80 182-278 30-110 (211)
264 PRK07671 cystathionine beta-ly 21.7 7.2E+02 0.016 23.8 9.8 51 234-284 123-174 (377)
265 PF02581 TMP-TENI: Thiamine mo 21.6 5E+02 0.011 21.9 9.3 59 223-281 93-156 (180)
266 KOG1549 Cysteine desulfurase N 21.5 4.3E+02 0.0093 26.3 7.8 76 212-287 144-224 (428)
267 TIGR03700 mena_SCO4494 putativ 21.4 7.1E+02 0.015 23.7 9.9 110 173-286 79-213 (351)
268 cd03329 MR_like_4 Mandelate ra 21.3 7.2E+02 0.016 23.7 15.4 150 109-281 143-299 (368)
269 PF01964 ThiC: ThiC family; I 21.1 1.2E+02 0.0026 29.9 3.8 137 108-278 73-219 (420)
270 PF05368 NmrA: NmrA-like famil 21.1 2.6E+02 0.0057 24.3 6.0 86 192-287 21-107 (233)
271 PLN02509 cystathionine beta-ly 21.0 6.9E+02 0.015 25.0 9.5 57 233-289 205-262 (464)
272 cd01320 ADA Adenosine deaminas 20.8 6.7E+02 0.015 23.2 10.8 107 173-280 66-192 (325)
273 PF01527 HTH_Tnp_1: Transposas 20.6 28 0.00061 24.9 -0.4 42 108-149 7-48 (76)
274 cd02070 corrinoid_protein_B12- 20.6 5.6E+02 0.012 22.1 10.3 22 108-129 8-29 (201)
275 PLN02389 biotin synthase 20.5 7.9E+02 0.017 23.8 9.9 108 173-285 116-237 (379)
276 COG0821 gcpE 1-hydroxy-2-methy 20.5 7.8E+02 0.017 23.7 9.0 80 185-277 44-126 (361)
277 cd00956 Transaldolase_FSA Tran 20.4 6E+02 0.013 22.4 10.3 90 174-276 62-157 (211)
278 PRK07114 keto-hydroxyglutarate 20.2 6.3E+02 0.014 22.6 8.2 36 109-144 25-60 (222)
279 TIGR02666 moaA molybdenum cofa 20.2 7.1E+02 0.015 23.2 15.5 120 107-243 42-176 (334)
280 PRK09454 ugpQ cytoplasmic glyc 20.2 6.3E+02 0.014 22.5 8.4 61 222-282 139-217 (249)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.3e-51 Score=388.06 Aligned_cols=232 Identities=24% Similarity=0.375 Sum_probs=201.0
Q ss_pred ceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCC--ChHHHHHHHHhhhhhcCCCcc
Q 020566 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEF 156 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~ 156 (324)
|.++++|++|++||.||||||.+|+.+...+.+++.++|++|+|+||||||||++|| .+|++||+||++.++ |+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd--- 76 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD--- 76 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC---
Confidence 458899999999999999999998755556667888899999999999999999998 599999999987653 33
Q ss_pred eeEEEEecccCCCC--------CCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 020566 157 LDKVRGLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (324)
Q Consensus 157 ~~~v~i~tK~~~~~--------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i 228 (324)
+++|+||++..+ .+.++++|+++++.||+|||||||||||+||||++.+ .++++++|++|+++||||+|
T Consensus 77 --~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~i 153 (316)
T COG0667 77 --KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYI 153 (316)
T ss_pred --eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEE
Confidence 889999975432 3579999999999999999999999999999999887 88999999999999999999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcCCCCcCCCCCCCCCC--CCCC
Q 020566 229 ALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFA--GPPL 306 (324)
Q Consensus 229 GvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~~~~~~~~--~~~~ 306 (324)
|+||++.+++.++.+...+++++|.+||++++..+.+++++|+++||++++||||++|+|||||.++ ...... .++|
T Consensus 154 G~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~-~~~~r~~~~~~~ 232 (316)
T COG0667 154 GVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG-PEGSRASELPRF 232 (316)
T ss_pred EecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC-cchhhccccccc
Confidence 9999999999999876457999999999999888888999999999999999999999999999985 211222 2567
Q ss_pred CCccHHHHHHhh
Q 020566 307 NTPSLQKYKRVQ 318 (324)
Q Consensus 307 ~~~~~~k~~~l~ 318 (324)
+.+..++..+++
T Consensus 233 ~~~~~~~~~~~~ 244 (316)
T COG0667 233 QRELTERGLAIL 244 (316)
T ss_pred hhhhhHHHHHHH
Confidence 666666655543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-49 Score=370.52 Aligned_cols=217 Identities=29% Similarity=0.443 Sum_probs=194.0
Q ss_pred cCcCcceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCC--ChHHHHHHHHhhhhhc
Q 020566 74 TSDKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRE 151 (324)
Q Consensus 74 ~~~~~~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~ 151 (324)
.+...+.++++|++|++||++|||||.+...++..+++++++++++|+|+|+||||||++|| .+|+++|++|++.+..
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~ 86 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWR 86 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCc
Confidence 34556789999999999999999997554433457999999999999999999999999998 4999999999987655
Q ss_pred CCCcceeEEEEecccCCC-----CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 020566 152 RPPEFLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 226 (324)
Q Consensus 152 r~~~~~~~v~i~tK~~~~-----~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir 226 (324)
|+ +++|+||++.. +.+.++..+.+.++.||++||++||||||+||+|+.++ .++++++|.+++++|+||
T Consensus 87 R~-----~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~ 160 (336)
T KOG1575|consen 87 RD-----KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIR 160 (336)
T ss_pred CC-----cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceE
Confidence 54 88889986432 46778899999999999999999999999999999999 999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHcC-CCeEEEeecCCccCCCccH-HHHHHHHHcCceEEEccccccCcCCCCcCCCC
Q 020566 227 TVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQ-KMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 296 (324)
Q Consensus 227 ~iGvSn~~~~~l~~~~~~g-~~~~~~Q~~yn~l~~~~~~-~ll~~~~~~gI~via~spLa~G~Ltg~~~~~~ 296 (324)
+||+|++++++++++.... +||.++|++||+++|..++ ++++.|+++||++++||||++|+|||||....
T Consensus 161 yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e 232 (336)
T KOG1575|consen 161 YWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGE 232 (336)
T ss_pred EEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccc
Confidence 9999999999999998853 6799999999999998554 69999999999999999999999999998753
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=9.1e-47 Score=344.68 Aligned_cols=184 Identities=22% Similarity=0.324 Sum_probs=162.2
Q ss_pred ccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccC
Q 020566 88 SLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 167 (324)
Q Consensus 88 g~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~ 167 (324)
|.+||.||||||++++. +.+.++|.+|++.|+|+||||..||+ |+.+|++|++.+.. |.++||+||+|
T Consensus 11 g~~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Ygn-E~~VG~aI~~s~v~-----ReelFittKvw 78 (280)
T COG0656 11 GVEIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYGN-EEEVGEAIKESGVP-----REELFITTKVW 78 (280)
T ss_pred CCcccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhcC-HHHHHHHHHhcCCC-----HHHeEEEeecC
Confidence 36699999999999751 33899999999999999999999995 77789999984433 34899999999
Q ss_pred CCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-C
Q 020566 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G 245 (324)
Q Consensus 168 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g 245 (324)
+. ..+++.+.+++++||++||+||||||+||||.+. ...+.|+|++|++++++||||+||||||+.++++++++. +
T Consensus 79 ~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~ 156 (280)
T COG0656 79 PS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAK 156 (280)
T ss_pred Cc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcC
Confidence 87 6689999999999999999999999999999763 222679999999999999999999999999999999985 6
Q ss_pred CCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCc
Q 020566 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
+.|++||++|||..+. .+++++|+++||.++|||||++|.
T Consensus 157 ~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 157 VKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred CCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCccccc
Confidence 7899999999997654 459999999999999999999643
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=6.8e-46 Score=350.29 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=179.3
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCC--ChHHHHHHHHhhhhhcCCCccee
Q 020566 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (324)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~ 158 (324)
++++|+||++||.||||||.+.+ +..+.+++.++++.|+++|||+||||+.|| .+|++||+||++.+..| .
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R-----~ 73 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRR-----S 73 (317)
T ss_pred CcccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCc-----c
Confidence 36789999999999999997432 145788999999999999999999999997 58999999998532223 3
Q ss_pred EEEEecccCCC-----CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCC
Q 020566 159 KVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (324)
Q Consensus 159 ~v~i~tK~~~~-----~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~ 233 (324)
+++|+||++.. ..+++++.+++++++||+|||+||||+|++|||++..+ .+++|++|++|+++||||+||||||
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~ 152 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRW 152 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCC
Confidence 78999996321 13468999999999999999999999999999988766 8899999999999999999999999
Q ss_pred CHHHHHHHHH----cC-CCeEEEeecCCccCCCc-cHHHHHHHHHcCceEEEccccccCcCCCCcCCC
Q 020566 234 DTERLRIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDT 295 (324)
Q Consensus 234 ~~~~l~~~~~----~g-~~~~~~Q~~yn~l~~~~-~~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~ 295 (324)
+.++++++.. .+ ++|+++|++||++++.. +.+++++|+++||++++|+||++|+|||+|.+.
T Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~ 220 (317)
T TIGR01293 153 SSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG 220 (317)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC
Confidence 9999887653 22 57899999999998874 668999999999999999999999999999654
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.9e-45 Score=351.17 Aligned_cols=210 Identities=23% Similarity=0.331 Sum_probs=179.9
Q ss_pred cceEEecCCCccccCceeecccc-CCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC----hHHHHHHHHhhhhhcC
Q 020566 78 QSITVSNGNDSLEICRVLNGMWQ-TSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRVRRER 152 (324)
Q Consensus 78 ~~~~~~lG~tg~~vs~lglGt~~-~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~----sE~~lG~al~~~~r~r 152 (324)
+|.++++|+||++||.||||||+ +|. ..+.+++.++|+.|++.|||+||||+.||+ +|+.||++|++...
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~---~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~-- 86 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGH---VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFA-- 86 (346)
T ss_pred CcceeecCCCCcccccccccCccccCC---CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhccc--
Confidence 36689999999999999999997 331 235678899999999999999999999983 89999999975310
Q ss_pred CCcceeEEEEecccCC----C--CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 020566 153 PPEFLDKVRGLTKWVP----P--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 226 (324)
Q Consensus 153 ~~~~~~~v~i~tK~~~----~--~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir 226 (324)
..|.+++|+||++. . +...+++.+++++++||+|||+||||+|++|||++..+ ++++|++|++|+++||||
T Consensus 87 --~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr 163 (346)
T PRK09912 87 --AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKAL 163 (346)
T ss_pred --CCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCee
Confidence 11337899999642 1 12357999999999999999999999999999987766 899999999999999999
Q ss_pred EEEecCCCHHHHHHHHH----cCCCeEEEeecCCccCCCcc-HHHHHHHHHcCceEEEccccccCcCCCCcCCC
Q 020566 227 TVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDT 295 (324)
Q Consensus 227 ~iGvSn~~~~~l~~~~~----~g~~~~~~Q~~yn~l~~~~~-~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~ 295 (324)
+||||||++++++++.+ .+.++.++|++||++++..+ .+++++|+++||++++|+||++|+|+++|.++
T Consensus 164 ~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~ 237 (346)
T PRK09912 164 YVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG 237 (346)
T ss_pred EEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC
Confidence 99999999999886654 25688999999999998655 47999999999999999999999999998654
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1e-44 Score=346.15 Aligned_cols=208 Identities=22% Similarity=0.311 Sum_probs=179.1
Q ss_pred ceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCC---------ChHHHHHHHHhhhh
Q 020566 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVR 149 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG---------~sE~~lG~al~~~~ 149 (324)
|.++++|+||++||.||||||.+|+ ..+.+++.++|+.|++.||||||||+.|| .+|++||++|++.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC
Confidence 4578999999999999999999874 34678999999999999999999999995 48999999997532
Q ss_pred hcCCCcceeEEEEecccCCCC----------CCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC--------------
Q 020566 150 RERPPEFLDKVRGLTKWVPPP----------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-------------- 205 (324)
Q Consensus 150 r~r~~~~~~~v~i~tK~~~~~----------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-------------- 205 (324)
. |.+++|+||++... .+++++.+++++++||+|||+||||||++|||++.
T Consensus 78 -~-----R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 151 (346)
T PRK10625 78 -S-----REKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS 151 (346)
T ss_pred -C-----cceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccc
Confidence 1 23889999974211 14689999999999999999999999999999652
Q ss_pred --CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cCC-CeEEEeecCCccCCCccHHHHHHHHHcCceEE
Q 020566 206 --NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 206 --~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~----~g~-~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
...++++|++|++|+++||||+||+|||+.+++++++. .+. .+.++|++||++++..+.+++++|+++||+++
T Consensus 152 ~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~vi 231 (346)
T PRK10625 152 APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL 231 (346)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEE
Confidence 11378999999999999999999999999999887653 233 48899999999988777799999999999999
Q ss_pred EccccccCcCCCCcCCC
Q 020566 279 TYGTVMGGLLSEKFLDT 295 (324)
Q Consensus 279 a~spLa~G~Ltg~~~~~ 295 (324)
+|+||++|+|+|+|...
T Consensus 232 a~spL~~G~Ltg~~~~~ 248 (346)
T PRK10625 232 AYSCLAFGTLTGKYLNG 248 (346)
T ss_pred EeccccCeeccCCCCCC
Confidence 99999999999998654
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.1e-44 Score=341.49 Aligned_cols=206 Identities=22% Similarity=0.311 Sum_probs=177.1
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhcCCCccee
Q 020566 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (324)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (324)
+|++|+||++||.||||||++|+.|+..+.+++.++++.|++.|||+||||+.||. +|+.+|++|++.+..| .
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R-----~ 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPR-----E 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCc-----c
Confidence 46799999999999999999987777788899999999999999999999999976 8999999998743233 3
Q ss_pred EEEEecccCCC--CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCC--CHHHHHHHHHHHHHcCCccEEEecCCC
Q 020566 159 KVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFD 234 (324)
Q Consensus 159 ~v~i~tK~~~~--~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~--~~~e~~~aL~~l~~~G~Ir~iGvSn~~ 234 (324)
+++|+||+++. ..+++++.+++++++||++||+||||+|+||||+.... .++++|++|++++++||||+||+|||+
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 89999998642 23578999999999999999999999999999975321 257899999999999999999999999
Q ss_pred HHHHHHHHHc---C-CCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcCCCCc
Q 020566 235 TERLRIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 292 (324)
Q Consensus 235 ~~~l~~~~~~---g-~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~ 292 (324)
+++++.+.+. + +.+..+|+.||++++.. .+++++|+++||++++|+||++|+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 9988877652 1 34555788999876533 48999999999999999999999999975
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-43 Score=329.51 Aligned_cols=207 Identities=31% Similarity=0.581 Sum_probs=185.3
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhcCCCccee
Q 020566 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (324)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (324)
++++|+||++||.||||||.++..| .+.+++.++++.|++.|||+||||+.||. +|+.+|++|++.+ .| .
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R-----~ 72 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PR-----E 72 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-Cc-----C
Confidence 3678999999999999999987655 67899999999999999999999999987 9999999998754 23 2
Q ss_pred EEEEecccCCCC---CCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 020566 159 KVRGLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 235 (324)
Q Consensus 159 ~v~i~tK~~~~~---~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~ 235 (324)
+++|+||+++.. .+.+++.+++++++||++||+||||+|+||||+.......++|++|++++++|+||+||||||++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 789999987643 23689999999999999999999999999999876655889999999999999999999999999
Q ss_pred HHHHHHHHc-CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcCCCCcCCC
Q 020566 236 ERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDT 295 (324)
Q Consensus 236 ~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~ 295 (324)
+.+.++++. ..+|+++|++||++++..+.+++++|+++||++++|+||++|.|++++.+.
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~ 213 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPG 213 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCC
Confidence 999999876 358999999999999887778999999999999999999999999876543
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.9e-43 Score=323.28 Aligned_cols=193 Identities=20% Similarity=0.370 Sum_probs=169.5
Q ss_pred ceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCccee
Q 020566 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLD 158 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~ 158 (324)
+.++++| .+||.||||||+. +..++.++++.|++.||||||||..||+.++ +|++|++.-.+.. ..|.
T Consensus 6 ~~~Ln~G---~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~e-vG~aik~~i~~~~-v~Re 73 (300)
T KOG1577|consen 6 TVKLNNG---FKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKE-VGEAIKELLAEGG-VKRE 73 (300)
T ss_pred eEeccCC---CccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCChHH-HHHHHHHHhhhCC-cchh
Confidence 3455555 8999999999984 4588999999999999999999999999555 6999997643433 5567
Q ss_pred EEEEecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC---------------CCCHHHHHHHHHHHHHcC
Q 020566 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEG 223 (324)
Q Consensus 159 ~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---------------~~~~~e~~~aL~~l~~~G 223 (324)
++||+||+|++ ...++.++.++++||++||+||+|||++|||-.. ..+..++|++||+++++|
T Consensus 74 diFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~G 151 (300)
T KOG1577|consen 74 DIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEG 151 (300)
T ss_pred hheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcC
Confidence 99999999987 5689999999999999999999999999998543 123778999999999999
Q ss_pred CccEEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCc
Q 020566 224 KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 224 ~Ir~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
+||+||||||+..+++++++. .++|.+||+++|| ...+.+++++|+++||.+.|||||+++-
T Consensus 152 l~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP--~~~Q~~L~~fCk~~~I~v~AYSpLg~~~ 214 (300)
T KOG1577|consen 152 LVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHP--YLQQKKLVEFCKSKGIVVTAYSPLGSPG 214 (300)
T ss_pred CceEeeeecCCHHHHHHHHhcCCCCCccceeeccC--CcChHHHHHHHhhCCcEEEEecCCCCCC
Confidence 999999999999999999985 6789999999999 5677899999999999999999999753
No 10
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.8e-43 Score=327.78 Aligned_cols=191 Identities=21% Similarity=0.177 Sum_probs=166.4
Q ss_pred ccccCceeeccccCCCC-------CCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEE
Q 020566 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (324)
Q Consensus 88 g~~vs~lglGt~~~g~~-------~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v 160 (324)
+++||+||||||++|+. |+..+.+++.++++.|++.||||||||+.||.+|+++|++|++ .+ +.++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~---~~----~~~~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR---PV----PFRV 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc---CC----ceEe
Confidence 47899999999999853 5778999999999999999999999999999999999999963 11 1256
Q ss_pred EEecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 020566 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (324)
Q Consensus 161 ~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~ 239 (324)
+++||.. ..+++.+++++++||+|||+||||+|++|||++. .+..+++|++|++++++||||+||||||+++++.
T Consensus 75 ~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 75 TLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred ecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 7788742 3478999999999999999999999999999753 2323678999999999999999999999999988
Q ss_pred HHHHcCCCeEEEeecCCccCCCcc-HHHHHHHHHcCceEEEccccccCcCCC
Q 020566 240 IILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSE 290 (324)
Q Consensus 240 ~~~~~g~~~~~~Q~~yn~l~~~~~-~~ll~~~~~~gI~via~spLa~G~Ltg 290 (324)
++.+. .+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~ 201 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFL 201 (292)
T ss_pred HHHhc-CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccC
Confidence 87654 479999999999998654 469999999999999999999999976
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.5e-42 Score=316.87 Aligned_cols=183 Identities=17% Similarity=0.252 Sum_probs=160.1
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCC
Q 020566 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 169 (324)
Q Consensus 90 ~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~ 169 (324)
+||.||||||++++ +++.++++.|++.||||||||+.||+ |+.||++|++.+.. |.+++|+||+++.
T Consensus 2 ~vs~lglGt~~~~~-------~~~~~~i~~A~~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~-----R~~v~i~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLKD-------QVVIDSVKTALELGYRAIDTAQIYDN-EAAVGQAIAESGVP-----RDELFITTKIWID 68 (267)
T ss_pred CCCCEeeEccccCh-------HHHHHHHHHHHHcCCCEEEccchhCC-HHHHHHHHHHcCCC-----hhHeEEEEEeCCC
Confidence 69999999998753 68999999999999999999999995 89999999863322 2389999998643
Q ss_pred CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC-
Q 020566 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI- 246 (324)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~- 246 (324)
..+++.+++++++||+|||+||||+|++|||++.. ....++|++|++++++||||+||||||+.++++++++. +.
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 146 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCC
Confidence 56899999999999999999999999999997642 23788999999999999999999999999999998874 33
Q ss_pred CeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcCC
Q 020566 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLS 289 (324)
Q Consensus 247 ~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Lt 289 (324)
+++++|++||++++ +.+++++|+++||++++|+||++|.+.
T Consensus 147 ~~~~~Q~~~~~~~~--~~~ll~~~~~~gi~v~a~spl~~G~~~ 187 (267)
T PRK11172 147 NIATNQIELSPYLQ--NRKVVAFAKEHGIHVTSYMTLAYGKVL 187 (267)
T ss_pred CCeEEeeecCCCCC--cHHHHHHHHHCCCEEEEECCCCCCccc
Confidence 68999999999875 468999999999999999999999664
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.7e-42 Score=317.16 Aligned_cols=197 Identities=29% Similarity=0.516 Sum_probs=168.3
Q ss_pred ceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCC--CChHHHHHHHHhhhhhcCCCcceeEEEEeccc---C
Q 020566 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW---V 167 (324)
Q Consensus 93 ~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~---~ 167 (324)
+||||||++++. ..+.+++.++++.|++.|||+||||+.| |.+|+.||++|++.+. .+.+++|+||+ .
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~-----~r~~~~i~tK~~~~~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRV-----PRDDIFISTKVYGDG 73 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSS-----TGGGSEEEEEEESSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccc-----ccccccccccccccc
Confidence 589999999753 6789999999999999999999999999 7799999999998222 23378888888 1
Q ss_pred CCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC
Q 020566 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI 246 (324)
Q Consensus 168 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~ 246 (324)
......+++.+++++++||++||+||||+|++|||+.......++|++|++|+++|+||+||||||+++.++++.+. ..
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 12236899999999999999999999999999999887665899999999999999999999999999999999554 46
Q ss_pred CeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcCCCCcCCCC
Q 020566 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 296 (324)
Q Consensus 247 ~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~~ 296 (324)
+|+++|++||++++..+.+++++|+++||++++|+||++|+|++++.+..
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~ 203 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPP 203 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCC
Confidence 89999999999977788899999999999999999999999999988765
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.3e-40 Score=307.87 Aligned_cols=198 Identities=18% Similarity=0.277 Sum_probs=166.5
Q ss_pred CcceEEecCCCccccCceeeccccCCC--CCCC-CCHHHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhc
Q 020566 77 KQSITVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRE 151 (324)
Q Consensus 77 ~~~~~~~lG~tg~~vs~lglGt~~~g~--~~~~-~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~ 151 (324)
|...++.++ |++||.||||||++|+ .|+. .+.+++.++++.|++.|||+||||+.||+ +|++||++++..
T Consensus 5 ~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~--- 79 (290)
T PRK10376 5 MSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPY--- 79 (290)
T ss_pred ccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcC---
Confidence 444466665 7999999999999975 3553 46789999999999999999999999986 789999999631
Q ss_pred CCCcceeEEEEecccCCC-------CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCC----CCCCHHHHHHHHHHHH
Q 020566 152 RPPEFLDKVRGLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLK 220 (324)
Q Consensus 152 r~~~~~~~v~i~tK~~~~-------~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~----~~~~~~e~~~aL~~l~ 220 (324)
| .+++|+||++.. +...+++.+++++++||+|||+||||+|++||++. ....++++|++|++|+
T Consensus 80 R-----~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~ 154 (290)
T PRK10376 80 P-----DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQ 154 (290)
T ss_pred C-----CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 2 278899997431 23568999999999999999999999999988521 1123788999999999
Q ss_pred HcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccC
Q 020566 221 EEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 221 ~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G 286 (324)
++||||+||||||++++++++.+.. +++++|++||++++. ..+++++|+++||++++|+||+++
T Consensus 155 ~~Gkir~iGvSn~~~~~l~~~~~~~-~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 155 RQGLVRHIGLSNVTPTQVAEARKIA-EIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HCCceeEEEecCCCHHHHHHHHhhC-CeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCC
Confidence 9999999999999999999988763 689999999999865 357999999999999999999743
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.2e-40 Score=305.76 Aligned_cols=183 Identities=20% Similarity=0.355 Sum_probs=161.1
Q ss_pred CCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecc
Q 020566 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (324)
Q Consensus 86 ~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (324)
++|+.||.||||||+++ .+++.+++++|++.|+||||||+.|| +|+.+|++|++.+..| .+++|+||
T Consensus 10 ~~g~~v~~lglG~~~~~-------~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R-----~~~~i~tK 76 (275)
T PRK11565 10 QDGNVMPQLGLGVWQAS-------NEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVAR-----EELFITTK 76 (275)
T ss_pred CCCCccCCcceECccCC-------HHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCH-----HHEEEEEE
Confidence 56799999999999763 47899999999999999999999999 4888999998643222 37999999
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-c
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-N 244 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~ 244 (324)
+++. +++.+++++++||++||+||||+|++|||++......++|++|++++++|+||+||||||++++++++++ .
T Consensus 77 ~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 152 (275)
T PRK11565 77 LWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDET 152 (275)
T ss_pred ecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhC
Confidence 8642 6789999999999999999999999999987654578999999999999999999999999999999875 4
Q ss_pred CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCc
Q 020566 245 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 245 g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
+++|.++|++||++.+ +.+++++|+++||++++|+||++|.
T Consensus 153 ~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 153 GVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred CCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCC
Confidence 6779999999999765 4689999999999999999999773
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=280.62 Aligned_cols=204 Identities=22% Similarity=0.375 Sum_probs=178.3
Q ss_pred ceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhcCCCcc
Q 020566 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEF 156 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~ 156 (324)
|.+..+|..|+++|++.+|+|++.. |+ .+..+....+..+++.|||+||-|+.||. +|+++|.+|+-.+ .+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p-----~l 73 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAP-----GL 73 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcCh-----hh
Confidence 4577889999999999999999964 53 45578899999999999999999999986 8999999998654 56
Q ss_pred eeEEEEecccCC----------CCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 020566 157 LDKVRGLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 226 (324)
Q Consensus 157 ~~~v~i~tK~~~----------~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir 226 (324)
|+++.|.||.+- ...+++.++|..++|+||++|+|||+|+++||+||+-.+ .+|+.+++..|+++||||
T Consensus 74 RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr 152 (298)
T COG4989 74 REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVR 152 (298)
T ss_pred hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCee
Confidence 678999999652 134789999999999999999999999999999998776 899999999999999999
Q ss_pred EEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCCCc-cHHHHHHHHHcCceEEEccccccC-cCCC
Q 020566 227 TVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG-LLSE 290 (324)
Q Consensus 227 ~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~-~~~ll~~~~~~gI~via~spLa~G-~Ltg 290 (324)
++|||||++.+++-+.+. ..++.+||++.|+++... .++.+++|+++.|..++||||++| +|+|
T Consensus 153 ~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 153 HFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred eeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 999999999999988764 446899999999987643 558999999999999999999987 4443
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5.3e-37 Score=272.58 Aligned_cols=225 Identities=22% Similarity=0.312 Sum_probs=188.1
Q ss_pred cceEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhcCCCc
Q 020566 78 QSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPE 155 (324)
Q Consensus 78 ~~~~~~lG~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~ 155 (324)
.|.+|.+|+||++||+||||+..+++.++..+.++....+..|+..|||+|||++.||. +|+.+|.++++.||+
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~---- 96 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPRE---- 96 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChh----
Confidence 35699999999999999999999998888888888888888899999999999999986 899999999998877
Q ss_pred ceeEEEEecccCC------CCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC---CCCHHHHHHHHHHHHHcCCcc
Q 020566 156 FLDKVRGLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIK 226 (324)
Q Consensus 156 ~~~~v~i~tK~~~------~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---~~~~~e~~~aL~~l~~~G~Ir 226 (324)
..+|+||++. +..+++.+.+++++++||+||++||+|++++|..+.. +..+.|++.+|+++|++||+|
T Consensus 97 ---aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~R 173 (342)
T KOG1576|consen 97 ---AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIR 173 (342)
T ss_pred ---heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCcee
Confidence 7888999753 2258899999999999999999999999999987643 223689999999999999999
Q ss_pred EEEecCCCHHHHHHHHHcCC-CeEEEe--ecCCccCCCccHHHHHHHHHcCceEEEccccccCcCCCCcCCCCCCCCCCC
Q 020566 227 TVALTNFDTERLRIILENGI-PVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAG 303 (324)
Q Consensus 227 ~iGvSn~~~~~l~~~~~~g~-~~~~~Q--~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~~~~~~~~~~~~ 303 (324)
+||++.+..+.+.+..+.+. ..+++- .+|++.+. .--..+++.+.+|++|+.-++++.|+|+.+ +
T Consensus 174 fiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~-tLl~~~~~~~sk~vgVi~AsalsmgLLt~~-----------g 241 (342)
T KOG1576|consen 174 FIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDN-TLLRYLKRLKSKGVGVINASALSMGLLTNQ-----------G 241 (342)
T ss_pred EeeecccchHHHHHHHhcCCCceeeehhhhhhccccH-HHHHHHHHHHhcCceEEehhhHHHHHhhcC-----------C
Confidence 99999999999999998642 466655 56666431 122677888899999999999999999973 5
Q ss_pred CCCCCccHHHHHHhhccc
Q 020566 304 PPLNTPSLQKYKRVQRPS 321 (324)
Q Consensus 304 ~~~~~~~~~k~~~l~~~~ 321 (324)
|+-+++.-+++++....+
T Consensus 242 p~~wHPaS~Elk~~a~~a 259 (342)
T KOG1576|consen 242 PPPWHPASDELKEAAKAA 259 (342)
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 555666666666555544
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3e-36 Score=279.11 Aligned_cols=205 Identities=20% Similarity=0.213 Sum_probs=177.0
Q ss_pred ceEEecCCCccccCceeeccccCCCCC-CCCCHHHHHHHHHHHHHcCCCeeecCCCC--CChHHHHHHHHhhhhhcCCCc
Q 020566 79 SITVSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPE 155 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~~~g~~~-~~~~~~~~~~~l~~Al~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~ 155 (324)
|.+|++|+||.++|.+|||||++.-.| +..|.+.+.++|++|++.||||||||..| |.+|..||++|++..|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re---- 76 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE---- 76 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc----
Confidence 578999999999999999999998655 46788999999999999999999999999 99999999999875543
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCC-H--HHHHHHHHHHHHcCCccEEEecC
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG-Y--LDALNHLTDLKEEGKIKTVALTN 232 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~-~--~e~~~aL~~l~~~G~Ir~iGvSn 232 (324)
+++++||....+ --+++++++-++++|++||+||+|+|+||..+.+.-+ . ...++.+++++++|+||++|+|.
T Consensus 77 ---kv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 77 ---KVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred ---eEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 899999985322 3488999999999999999999999999998653211 1 12799999999999999999999
Q ss_pred CCH-HHHHHHHHcCCCeEEEeecCCccCCCccH--HHHHHHHHcCceEEEccccccCcCCCCc
Q 020566 233 FDT-ERLRIILENGIPVVSNQVQHSVVDMRPQQ--KMAELCQLTGVKLITYGTVMGGLLSEKF 292 (324)
Q Consensus 233 ~~~-~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~--~ll~~~~~~gI~via~spLa~G~Ltg~~ 292 (324)
|+. +.+.+++.. .+++++|++||.++...+. +.+++|.++|++|+.++|+.+|-|..+.
T Consensus 153 Hgs~e~~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v 214 (391)
T COG1453 153 HGSTEVFKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV 214 (391)
T ss_pred CCCHHHHHHHHhc-CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC
Confidence 986 567777766 4699999999999876653 8999999999999999999999887743
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.10 E-value=7.9e-06 Score=72.78 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
+.+.|+.||+++.+|+|..||||.|+..+++++... .+.|..+|++..-.+.-|. ++.++|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPp-dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPP-DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCH-HHHHHhhhcceeeeecC
Confidence 556999999999999999999999999999999985 7889999999887765554 89999999999999886
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.84 E-value=3.5 Score=36.17 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHh-----------HH
Q 020566 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES-----------ID 183 (324)
Q Consensus 115 ~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~-----------le 183 (324)
+++..-++-|-+..|-....|. |-+.|++ ++. +.... -+.+.+.+.++ ++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----LL~~L~~---~k~------v~g~G------vEid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----LLAYLKD---EKQ------VDGYG------VEIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----HHHHHHH---hcC------CeEEE------EecCHHHHHHHHHcCCCEEECCHH
Confidence 3555567788899998875442 3445543 211 11100 02344445444 45
Q ss_pred HHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-cCCCeEEEeecCCccCCCc
Q 020566 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP 262 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~g~~~~~~Q~~yn~l~~~~ 262 (324)
+.|....-+.+|.+.+..--. .+....+.|+|+.+-|+---|++.||.-+..+.-+- .|-.|..-+++|+..+...
T Consensus 66 ~gL~~f~d~sFD~VIlsqtLQ---~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTLQ---AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HhHhhCCCCCccEEehHhHHH---hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 566666666777776643211 123344557888888998889999999998876554 5666888888888755322
Q ss_pred -----cHHHHHHHHHcCceEEEccccccCc
Q 020566 263 -----QQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 263 -----~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
-.+..++|++.||.+.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 3589999999999999999998765
No 20
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.35 E-value=11 Score=34.35 Aligned_cols=112 Identities=11% Similarity=0.005 Sum_probs=80.3
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (324)
..++..+.+.+...+-.+-..+-++++.|-|=.+..+....++..+++++.++|+++|.+- +=+++-++...+++.+.|
T Consensus 66 lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G 144 (250)
T PRK00208 66 LPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG 144 (250)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC
Confidence 3445567788888888888889999999999888888777788999999999999999863 446777888888887765
Q ss_pred CCeEEEeecCCccCCC---ccHHHHHHHHH-cCceEEEc
Q 020566 246 IPVVSNQVQHSVVDMR---PQQKMAELCQL-TGVKLITY 280 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~---~~~~ll~~~~~-~gI~via~ 280 (324)
+++++.--+++-.. ...+.++..++ .++.|++-
T Consensus 145 --~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 145 --CAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred --CCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 44443322232111 12356666666 47887764
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.62 E-value=7.5 Score=36.50 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCC-hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHh
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~-sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (324)
+.++..+.++.+.+.|++.|+.-- |. .+..+ +-++..... +- ++.+.-+... .++.+... .+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~-~~v~~lr~~----~g-~~~l~vD~n~---~~~~~~A~-~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDI-ERIRAIREA----AP-DARLRVDANQ---GWTPEEAV-ELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHH-HHHHHHHHh----CC-CCeEEEeCCC---CcCHHHHH-HHHHHHH
Confidence 557777888888999999998743 32 12111 112222111 10 1223333321 34554432 2334445
Q ss_pred hcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHH
Q 020566 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQK 265 (324)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ 265 (324)
.+ ++.++..|-+. +-++.+.++++...|. +.|=+-++.+.++++++.+ ..+++|+..+.+-. ..-.+
T Consensus 202 ~~-----~l~~iEeP~~~-----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 202 EL-----GVELIEQPVPA-----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred hc-----CCCEEECCCCC-----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHHHH
Confidence 54 44445555332 2355677888887776 4456678899999988865 48888888654311 12248
Q ss_pred HHHHHHHcCceEEEccccccC
Q 020566 266 MAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 266 ll~~~~~~gI~via~spLa~G 286 (324)
+..+|+++||.++..+-+..|
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 999999999999987555443
No 22
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.13 E-value=21 Score=32.65 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=79.9
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (324)
..++..+.+.+...+-.+-..+-++++.|-|=.+..+..-.++..+++++.++|+++|.+- +=+++-++...+++.+.|
T Consensus 66 lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G 144 (248)
T cd04728 66 LPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG 144 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC
Confidence 3445567788888888888889999999999888887776778999999999999999863 446777888888887765
Q ss_pred CCeEEEeecCCccCCC---ccHHHHHHHHH-cCceEEEc
Q 020566 246 IPVVSNQVQHSVVDMR---PQQKMAELCQL-TGVKLITY 280 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~---~~~~ll~~~~~-~gI~via~ 280 (324)
+++++.--+++-.. ...++++..++ .++.|++-
T Consensus 145 --~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 145 --CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred --CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 44444322333211 12456666665 47787753
No 23
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.53 E-value=20 Score=32.61 Aligned_cols=155 Identities=10% Similarity=0.053 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHH--HHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYG--IFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG--~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
+.++..+.++.+.+.|++.|-.=-. ++.++-+- +++++.-.+ ++.+.-... ..++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg-~~~~~d~~~v~~vr~~~g~-------~~~l~vDan---~~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVG-RDPARDVAVVAALREAVGD-------DAELRVDAN---RGWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecC-CCHHHHHHHHHHHHHhcCC-------CCEEEEeCC---CCcCHHHHHHHH-HHH
Confidence 3466777888889999998875321 11122111 223321111 122222221 145655544433 344
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccH
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQ 264 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~ 264 (324)
+.++ +.+++.|-+. +-++.+.++++.-.+. +.|=+-++...+.++++.+ .++++|+..+..-. ..-.
T Consensus 153 ~~~~-----i~~iEeP~~~-----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~ 221 (265)
T cd03315 153 EDLG-----LDYVEQPLPA-----DDLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAKTGGLTKAQ 221 (265)
T ss_pred HhcC-----CCEEECCCCc-----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEecccccCHHHHH
Confidence 4444 4455666432 2356667787776665 4555678889999888765 47888888665322 1234
Q ss_pred HHHHHHHHcCceEEEccccccC
Q 020566 265 KMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 265 ~ll~~~~~~gI~via~spLa~G 286 (324)
++.+.|+++|+.++..+.+.+|
T Consensus 222 ~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 222 RVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHcCCcEEecCccchH
Confidence 8999999999999987665544
No 24
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.48 E-value=3.5 Score=37.40 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+-++ .|.++|+++|++-..-.+... +...+.++.++++++.+ .++...++....+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 445555555444 477899999998765433211 22455788889999988 6777677776677888888776 344
Q ss_pred EeecCCccC--------CCc------cHHHHHHHHHcCceEEEcc
Q 020566 251 NQVQHSVVD--------MRP------QQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 251 ~Q~~yn~l~--------~~~------~~~ll~~~~~~gI~via~s 281 (324)
+++.+..-+ +.. -.+.+++++++|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444443321 111 2267888999998876655
No 25
>PRK06740 histidinol-phosphatase; Validated
Probab=85.60 E-value=34 Score=32.61 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred hHHHHHhhcCCCccceEEeecCCC---CCCC-------------HHHHHHHHHHHHHcCCccEEEec------CCCH---
Q 020566 181 SIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALT------NFDT--- 235 (324)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~---~~~~-------------~~e~~~aL~~l~~~G~Ir~iGvS------n~~~--- 235 (324)
.++..|+....||+ +.-+|+.+. ..+. ...-.+.+.++.+.|++..||=- |+.+
T Consensus 157 ~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~ 235 (331)
T PRK06740 157 ELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDEN 235 (331)
T ss_pred HHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchh
Confidence 45556666777877 777897531 1111 11244677888899998888722 1111
Q ss_pred ---HHHHH----HHHcCCCeEEEee-cC--CccCCCccHHHHHHHHHcCceEE
Q 020566 236 ---ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 236 ---~~l~~----~~~~g~~~~~~Q~-~y--n~l~~~~~~~ll~~~~~~gI~vi 278 (324)
+.+++ +.+.|..+.+|-- .+ ..-+..+...+++.|++.|+.++
T Consensus 236 ~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~t 288 (331)
T PRK06740 236 EQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPIT 288 (331)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEE
Confidence 23333 3345777777764 12 22223456689999999999865
No 26
>PRK08609 hypothetical protein; Provisional
Probab=84.68 E-value=33 Score=35.30 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCCeeecCCCC-------CChHHHHHHH---HhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhH
Q 020566 113 AVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (324)
Q Consensus 113 ~~~~l~~Al~~Gin~fDTA~~Y-------G~sE~~lG~a---l~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (324)
..++++.|.+.|+.+|=.++++ |.+...+-.. ++...+... . .++..+.-+.-.+ +.. .+-.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~--i~Il~GiEv~i~~-~g~----~d~~ 422 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-E--IDILSGIEMDILP-DGS----LDYD 422 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-C--CeEEEEEEEeecC-Ccc----hhhc
Confidence 4559999999999999777775 2222222222 222222211 1 2333333221111 111 1222
Q ss_pred HHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC---------CC--HHHHHHH-HHcCCCeEE
Q 020566 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FD--TERLRII-LENGIPVVS 250 (324)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn---------~~--~~~l~~~-~~~g~~~~~ 250 (324)
+..|+. .||+ +.-+|++.. .+ .++.++.+.++.+.|.+.-||=-. +. .+.+.++ .+.|..+.+
T Consensus 423 ~~~L~~--~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEI 497 (570)
T PRK08609 423 DEVLAE--LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALEL 497 (570)
T ss_pred HHHHHh--hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEE
Confidence 224443 5666 777897532 22 567888899999999888776332 11 1233333 446654444
Q ss_pred EeecCCccCCCccHHHHHHHHHcCceEE
Q 020566 251 NQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 251 ~Q~~yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
| -+++.......++..|.+.|+.++
T Consensus 498 N---a~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 498 N---ANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred c---CCccccCccHHHHHHHHHcCCEEE
Confidence 4 444333455689999999999754
No 27
>PRK08392 hypothetical protein; Provisional
Probab=84.14 E-value=29 Score=30.64 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCCeeecCCCCC--ChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhc
Q 020566 112 DAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRM 189 (324)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rL 189 (324)
...+.++.|.+.|++.|=.+++.- ..+. +-..+++..+-+. ....++..+.-+.-.+ + . .+..++.++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~-~~~y~~~i~~l~~-~~~i~il~GiE~~~~~-~-~----~~~~~~~~~-- 84 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSK-FNAYINEIRQWGE-ESEIVVLAGIEANITP-N-G----VDITDDFAK-- 84 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhh-HHHHHHHHHHHhh-ccCceEEEeEEeeecC-C-c----chhHHHHHh--
Confidence 466899999999999986666542 1111 2222222111100 0112333333221111 0 1 122233344
Q ss_pred CCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-------CC-HHHH----HHHHHcCCCeEEEeecCCc
Q 020566 190 DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-------FD-TERL----RIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 190 g~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-------~~-~~~l----~~~~~~g~~~~~~Q~~yn~ 257 (324)
..||+ +.-+|++.. .....+-++.+.++.+.|.+.-+|=-. +. .+.+ +.+.+.|..+.+|-. +
T Consensus 85 ~~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~-~-- 159 (215)
T PRK08392 85 KLDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR-Y-- 159 (215)
T ss_pred hCCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC-C--
Confidence 34665 667784422 222556777888888999877776321 11 1233 333346776777742 2
Q ss_pred cCCCccHHHHHHHHHcCceEE
Q 020566 258 VDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 258 l~~~~~~~ll~~~~~~gI~vi 278 (324)
+.+..++++.|++.|+.++
T Consensus 160 --~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 160 --RVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred --CCCCHHHHHHHHHcCCEEE
Confidence 3456689999999998754
No 28
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=83.78 E-value=2.6 Score=41.93 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHHHHHHcCCCeee--cCCCC----------CChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHH----
Q 020566 116 AMLRYADAGLTTFD--MADHY----------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR---- 179 (324)
Q Consensus 116 ~l~~Al~~Gin~fD--TA~~Y----------G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~---- 179 (324)
-++..-+.|+.-+- ||-.| |.-|.++--+-+..+ . .+.-++++++-.+.-. +--|..+.
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~-~---~L~G~~~lTaGLGGMg-GAQPlA~~mag~ 182 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFG-G---SLKGKWVLTAGLGGMG-GAQPLAVTMNGG 182 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcC-C---CCceeEEEEeCCCccc-cccHHHHHHcCc
Confidence 45556667777552 54443 335665433333332 2 3555677776554211 00111110
Q ss_pred ------HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEE--E
Q 020566 180 ------ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--N 251 (324)
Q Consensus 180 ------~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~--~ 251 (324)
-.-.+.-+|+.+.|+|.+ ..+++|+++..++.+++|+...||+-..-.+.+.++++.++.|++ -
T Consensus 183 v~i~vEvd~~ri~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtD 254 (545)
T TIGR01228 183 VSIAVEVDESRIDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTD 254 (545)
T ss_pred eEEEEEECHHHHHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCC
Confidence 112344468889999987 234899999999999999999999999999999999998876554 4
Q ss_pred eec
Q 020566 252 QVQ 254 (324)
Q Consensus 252 Q~~ 254 (324)
|..
T Consensus 255 QTS 257 (545)
T TIGR01228 255 QTS 257 (545)
T ss_pred CCc
Confidence 555
No 29
>PRK05414 urocanate hydratase; Provisional
Probab=83.64 E-value=2.7 Score=41.96 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=80.6
Q ss_pred HHHHHHHcCCCeee--cCCCC----------CChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHH----
Q 020566 116 AMLRYADAGLTTFD--MADHY----------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR---- 179 (324)
Q Consensus 116 ~l~~Al~~Gin~fD--TA~~Y----------G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~---- 179 (324)
-++..-+.|+.-+- ||-.| |.-|.++--+-+... . ++.-++++++-++.-. +--|..+.
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g---~L~G~~~lTaGLGGMg-GAQPlA~~mag~ 191 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G---DLAGRLVLTAGLGGMG-GAQPLAATMAGA 191 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C---CCceeEEEEecCCccc-cccHHHHHhcCc
Confidence 45556667776552 55443 335765443333332 2 4556777777654211 00111100
Q ss_pred ------HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEE--E
Q 020566 180 ------ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--N 251 (324)
Q Consensus 180 ------~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~--~ 251 (324)
-.-.+.-+|+.+.|+|.+ ..+++|+++..++.+++|+...||+-..-.+.+.++++.++.|++ -
T Consensus 192 v~i~vEvd~~ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtD 263 (556)
T PRK05414 192 VCLAVEVDESRIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTD 263 (556)
T ss_pred eEEEEEECHHHHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCc
Confidence 112344468899999987 234899999999999999999999999999999999998876554 4
Q ss_pred eec
Q 020566 252 QVQ 254 (324)
Q Consensus 252 Q~~ 254 (324)
|..
T Consensus 264 QTS 266 (556)
T PRK05414 264 QTS 266 (556)
T ss_pred Ccc
Confidence 555
No 30
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=80.76 E-value=53 Score=31.23 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCC--------hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGP--------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~--------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (324)
+.++..+.++.+.+.|++.|-.--..+. ..+.+ +++++.-.+ ++.+.-... . .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~-------~~~l~vDaN-~--~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGP-------DVDLMVDAN-G--RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCC-------CCEEEEECC-C--CCCHHHHHH
Confidence 4577778888888999998865322221 11221 223221111 222222322 1 456555443
Q ss_pred hHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 020566 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (324)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~ 259 (324)
-++ .|+.+ ++.+++.|-+. +.++.+.++++.-.+. ..|=|.++++.+.++++.+ ..+++|+.....-
T Consensus 208 ~~~-~l~~~-----~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~G 275 (357)
T cd03316 208 LAR-ALEEY-----DLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVG 275 (357)
T ss_pred HHH-HhCcc-----CCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccC
Confidence 332 23333 45556666432 2456677788776665 4555678899999998875 4788888866532
Q ss_pred C-CccHHHHHHHHHcCceEEEccc
Q 020566 260 M-RPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 260 ~-~~~~~ll~~~~~~gI~via~sp 282 (324)
. ..-.++.+.|+++|+.++..+-
T Consensus 276 Gi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 276 GITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CHHHHHHHHHHHHHcCCeEeccCC
Confidence 1 1234899999999999987764
No 31
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=78.73 E-value=3.7 Score=40.46 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=50.3
Q ss_pred HhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEE
Q 020566 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (324)
-.||.+.|+|.. ...++|+++-.++..++|+-.+||+-..-.+.+.+++++++.|+++
T Consensus 204 ~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 368889999875 2348999999999999999999999999999999999988877765
No 32
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=77.83 E-value=71 Score=31.32 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCCee-ecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecc--------cCCCCCCCCHHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK--------WVPPPVKMTSSIV 178 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK--------~~~~~~~~~~~~i 178 (324)
.+.+.-.+=++.|++.|-..+ |-+. .|+-.++=-+.|+..+. -|.|- ......+.+.+.+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~s~v----------pvGTVPiYqa~~~~~~~~~~mt~d~~ 142 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDAVPV----------PVGTVPIYQAAEKVHGAVEDMDEDDM 142 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCC----------CccCccHHHHHHHhcCChhhCCHHHH
Confidence 455666677899999997644 5553 45544432333333221 12221 1112236788888
Q ss_pred HHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCcc
Q 020566 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (324)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l 258 (324)
.+.+++..+ |-+|.+-||.- -..+.++.++++|++ .|+-+-.-.-+..++.+. -.=||+
T Consensus 143 ~~~ie~qa~----dGVDfmTiH~G--------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~-------~~ENPl 201 (423)
T TIGR00190 143 FRAIEKQAK----DGVDFMTIHAG--------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHH-------HKENPL 201 (423)
T ss_pred HHHHHHHHH----hCCCEEEEccc--------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHc-------CCcCch
Confidence 888888776 45788999964 156667889999954 666655555555544321 122344
Q ss_pred CCCccHHHHHHHHHcCceEEEccccccCcCCCC
Q 020566 259 DMRPQQKMAELCQLTGVKLITYGTVMGGLLSEK 291 (324)
Q Consensus 259 ~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~ 291 (324)
+ ..-+.+++.|+++++.+- |+-|+=.|.
T Consensus 202 y-e~fD~lLeI~~~yDVtlS----LGDglRPG~ 229 (423)
T TIGR00190 202 Y-KNFDYILEIAKEYDVTLS----LGDGLRPGC 229 (423)
T ss_pred H-HHHHHHHHHHHHhCeeee----ccCCcCCCc
Confidence 2 223378888999888864 444444443
No 33
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=76.48 E-value=5.2 Score=40.08 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCeee--cCCCC---CC-------hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCC-----------
Q 020566 115 DAMLRYADAGLTTFD--MADHY---GP-------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV----------- 171 (324)
Q Consensus 115 ~~l~~Al~~Gin~fD--TA~~Y---G~-------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~----------- 171 (324)
+-++...+.|+.-+- ||-.| |. -|.+ ..+-++.... .+.-++++++-.+.-..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~-~~aark~~g~---~L~Gk~~lTaGLGGMgGAQplA~~m~g~ 181 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETF-LNAARKHFGG---DLAGKLFLTAGLGGMGGAQPLAATMAGG 181 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHH-HHHHHHHSTT---S-TT-EEEEE--STTCCHHHHHHHHTT-
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHH-HHHHHHhcCC---CCcceEEEEecccccccchHHHHHhcCc
Confidence 456667778887663 55444 33 4554 3333332222 45557788776542110
Q ss_pred -----CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 020566 172 -----KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (324)
Q Consensus 172 -----~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (324)
+.++ ++.-+|+.+.|+|.+. .+++|+++..++.+++|+...||+-..-.+.++++++.++
T Consensus 182 v~l~vEvd~-------~ri~kR~~~g~ld~~~--------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i 246 (546)
T PF01175_consen 182 VGLIVEVDP-------SRIEKRLEQGYLDEVT--------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGI 246 (546)
T ss_dssp EEEEEES-H-------HHHHHHHHTTSSSEEE--------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT-
T ss_pred eEEEEEECH-------HHHHHHHhCCCeeEEc--------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCC
Confidence 1222 3444688889999883 3489999999999999999999999988999999999876
Q ss_pred CeE--EEeecC-Ccc
Q 020566 247 PVV--SNQVQH-SVV 258 (324)
Q Consensus 247 ~~~--~~Q~~y-n~l 258 (324)
.|+ +-|... +|+
T Consensus 247 ~pDl~tDQTS~Hdp~ 261 (546)
T PF01175_consen 247 IPDLVTDQTSAHDPL 261 (546)
T ss_dssp --SEE---SSTT-TT
T ss_pred CCCcccCCCcccccc
Confidence 554 456663 444
No 34
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=76.30 E-value=25 Score=32.75 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q 252 (324)
++.+.. ..+-+.|.++|+++|++-..+.|.. .+...+.++.+..+.+...++...+. .+...++.+.+.|.+...+-
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~-~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKW-VPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCccc-ccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 344443 4455668999999999974444421 12233456666666655456666655 47888888888775533333
Q ss_pred ecCCcc------CCCc------cHHHHHHHHHcCceEEEcccc
Q 020566 253 VQHSVV------DMRP------QQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 253 ~~yn~l------~~~~------~~~ll~~~~~~gI~via~spL 283 (324)
+..|.. .+.. -.+.+++++++|+.+.++-..
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 333321 1111 126899999999988654433
No 35
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=76.10 E-value=71 Score=30.14 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhh
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (324)
+.++..+.+....+.|++.|=.-- -...+.-+=+++++.. + ++.+.-.. +. .++.+..+ . -+.|+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv-~~~~d~~~v~~vr~~~-~-------~~~l~vDa-N~--~~~~~~a~-~-~~~l~~ 197 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI-TPQIMHQLVKLRRLRF-P-------QIPLVIDA-NE--SYDLQDFP-R-LKELDR 197 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe-CCchhHHHHHHHHHhC-C-------CCcEEEEC-CC--CCCHHHHH-H-HHHHhh
Confidence 446677777888899999873211 0111211123333321 1 12222221 11 35665532 1 233443
Q ss_pred cCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHH
Q 020566 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKM 266 (324)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~l 266 (324)
.++.++..|-+ .+.++.+.+++++..+. +.|=|.++...+..+++.+ ..+++|+...-+-. ..-.++
T Consensus 198 -----~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 198 -----YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred -----CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHH
Confidence 35666666632 24567788888876665 6777889999999998875 37888888664321 112389
Q ss_pred HHHHHHcCceEEEccccccC
Q 020566 267 AELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 267 l~~~~~~gI~via~spLa~G 286 (324)
.+.|+++||.++..+.+.+|
T Consensus 267 ~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHcCCeEEEcceEccc
Confidence 99999999999987666555
No 36
>PRK14017 galactonate dehydratase; Provisional
Probab=76.09 E-value=73 Score=30.83 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCC-----CCCC---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMAD-----HYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~-----~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (324)
+.++..+.+..+.+.|++.|=.=- .++. -++- -+.++..+.. +-.++.+.--. + ..++.+...+
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d-~~~i~avr~~----~g~~~~l~vDa-N--~~w~~~~A~~ 195 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAA-VARVAAVREA----VGPEIGIGVDF-H--GRVHKPMAKV 195 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHH-HHHHHHHHHH----hCCCCeEEEEC-C--CCCCHHHHHH
Confidence 456677778888899999885521 1110 0111 1112221111 00012222222 1 1456554322
Q ss_pred hHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 020566 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (324)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~ 259 (324)
-++.|. -+++.++..|-+. +.++.+.+|.++..+. +.|=|-++...+..+++.+ .++++|+..+.+-
T Consensus 196 ----~~~~l~--~~~~~~iEeP~~~-----~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~G 263 (382)
T PRK14017 196 ----LAKELE--PYRPMFIEEPVLP-----ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAG 263 (382)
T ss_pred ----HHHhhc--ccCCCeEECCCCc-----CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccC
Confidence 222332 2456666766432 2356678888887766 6677889999999998876 3788888866431
Q ss_pred C-CccHHHHHHHHHcCceEEEccc
Q 020566 260 M-RPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 260 ~-~~~~~ll~~~~~~gI~via~sp 282 (324)
. ..-.++.+.|+++||.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 1 1234899999999999998764
No 37
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=74.76 E-value=82 Score=30.22 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhh
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (324)
+.++..+.+..+.+.|++.|=.=- .+.+. ++++.-.+ ++.+.-.. + ..++.+...+-+ +.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v~-avre~~G~-------~~~l~vDa-N--~~w~~~~A~~~~----~~ 185 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-----PKLFE-AVREKFGF-------EFHLLHDV-H--HRLTPNQAARFG----KD 185 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-----HHHHH-HHHhccCC-------CceEEEEC-C--CCCCHHHHHHHH----HH
Confidence 446666777888899999874311 22222 23321111 22222221 1 145665433322 23
Q ss_pred cCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-ccHHH
Q 020566 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKM 266 (324)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~-~~~~l 266 (324)
|. -++++++..|-+. +-++.+.+|++...+. +.|=|-++...+..+++.+ .++++|+.....-.- .-.++
T Consensus 186 l~--~~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 186 VE--PYRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred hh--hcCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHH
Confidence 32 3467777776432 2466778888888776 6777888999999998875 488888886643211 23389
Q ss_pred HHHHHHcCceEEEccc
Q 020566 267 AELCQLTGVKLITYGT 282 (324)
Q Consensus 267 l~~~~~~gI~via~sp 282 (324)
.+.|+++|+.++.++.
T Consensus 258 a~~A~~~gi~~~~h~~ 273 (361)
T cd03322 258 ADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHcCCeeeccCC
Confidence 9999999999987643
No 38
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.20 E-value=77 Score=29.67 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=88.9
Q ss_pred ceeeccccCCCCC-CCCCHHHHHHHHHHHH-HcCCCeeecCCCCCCh-----HHHHHHHHhhhhhcCCCcceeEEEEecc
Q 020566 93 RVLNGMWQTSGGW-GRIDRDDAVDAMLRYA-DAGLTTFDMADHYGPA-----EDLYGIFINRVRRERPPEFLDKVRGLTK 165 (324)
Q Consensus 93 ~lglGt~~~g~~~-~~~~~~~~~~~l~~Al-~~Gin~fDTA~~YG~s-----E~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (324)
.|.+|.|.-.... ...+.++..+.+...+ ..|++.+|--..|+.. -..+-++|+.+..+.. .+. +.++.-
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p-~l~--vs~Tlp 147 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP-DLK--ISFTLP 147 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC-CcE--EEEecC
Confidence 3457766532211 1234555555555555 4599999986666531 1345677777655543 222 222222
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCC--CccceEEeecCCCC-CCCH-HHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYS-NPGY-LDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~--dyiDl~~lH~p~~~-~~~~-~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (324)
..+. .++++.+ .+-+..+.-|+ |+|.+.-+-.-... ..++ ..+..+.+.++.+=+--+=+ ++..++-..
T Consensus 148 ~~p~--gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 148 VLPT--GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred CCCC--CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 2232 4454432 24444445554 45555444321110 1112 33555555554432221111 233322221
Q ss_pred HHcCCCeEEEeecCC--ccCCCccHHHHHHHHHcCceEEEccccccCc
Q 020566 242 LENGIPVVSNQVQHS--VVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 242 ~~~g~~~~~~Q~~yn--~l~~~~~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
.|+.|.+=+.... .+....-+.+.++++++||+.++|..+.+..
T Consensus 221 --ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 221 --IGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred --ccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 2343433332221 1222234589999999999999999997653
No 39
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=73.96 E-value=69 Score=29.17 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=90.3
Q ss_pred CceeeccccCCCCCCCCCHHHHHHHHHHHHH-cCCCeeecCCCC----CC-hHHHHHHHHhhhhhcCCCcceeEEEEecc
Q 020566 92 CRVLNGMWQTSGGWGRIDRDDAVDAMLRYAD-AGLTTFDMADHY----GP-AEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (324)
Q Consensus 92 s~lglGt~~~g~~~~~~~~~~~~~~l~~Al~-~Gin~fDTA~~Y----G~-sE~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (324)
|+|-+||..+.+ .+++..|++ .|-..+-.|--- +. .+.-+ +.-.+.. .+ +.
T Consensus 9 SRL~lGTgky~s----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~---~~~i~~~-------~~---~l 65 (247)
T PF05690_consen 9 SRLILGTGKYPS----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNI---LDYIDRS-------GY---TL 65 (247)
T ss_dssp -SEEEE-STSSS----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHC---CCCTTCC-------TS---EE
T ss_pred cceEEecCCCCC----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccH---HHHhccc-------CC---EE
Confidence 688999976643 456667764 576666554211 10 11111 2111112 11 11
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (324)
..++..+.+.+...+..+-..+-++++.|-|=.+..+..-.|+..|++++-++|+++|-+-. =-++-++-..+++.+.|
T Consensus 66 LPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d~G 144 (247)
T PF05690_consen 66 LPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEDAG 144 (247)
T ss_dssp EEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHHTT
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHCC
Confidence 22334477888888888999999999998888777666556778999999999999997533 33455677777777765
Q ss_pred CCeEEEeecCCccCCCc----cHHHHHHHHHcCceEEEcc
Q 020566 246 IPVVSNQVQHSVVDMRP----QQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~~----~~~ll~~~~~~gI~via~s 281 (324)
..+++.--+|+-... ...+...+++.+|+||.-.
T Consensus 145 --caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 145 --CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp ---SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred --CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 445555555542111 1245555667788888644
No 40
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=73.76 E-value=1.6 Score=42.02 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred cCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCce
Q 020566 222 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (324)
Q Consensus 222 ~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~ 276 (324)
-|+||++||--|+++++.++.+..-.-+..+.+..++-...+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999999875321122222222232223355788888888875
No 41
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=72.80 E-value=18 Score=32.14 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=57.0
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q 252 (324)
+++...+ +-+.|-+-|++.+.+=+ + .+ +.++.+++++++..=-.||.-+ .+.++++.+.+.|..|.
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~-----t~---~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-R-----TP---VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-C-----Cc---cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 3344433 44456677776666543 1 22 3555566666654334688765 67899999999887664
Q ss_pred ecCCccCCCccHHHHHHHHHcCceEEE
Q 020566 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 253 ~~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
.+| ..+.+++++|+++||.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 233 3356999999999998775
No 42
>PRK07945 hypothetical protein; Provisional
Probab=70.45 E-value=1e+02 Score=29.41 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCC-------CChHHHHHHHHhh---hhhcCCCcceeEEEEec--ccCCCCCCCCHHHH
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIFINR---VRRERPPEFLDKVRGLT--KWVPPPVKMTSSIV 178 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~Y-------G~sE~~lG~al~~---~~r~r~~~~~~~v~i~t--K~~~~~~~~~~~~i 178 (324)
....++++.|++.|+..+=.+++. +.+...+-+.++. .++... .+ ++..+- .+.+ +...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~-~I--~Il~GiE~d~~~---~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELA-PF--RILTGIEVDILD---DGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcC-Cc--eEEEEeEecccC---CCCcchh
Confidence 456789999999999988666553 1111112222222 222211 22 233222 2222 1122222
Q ss_pred HHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec---------------CCCHH-HHHHHH
Q 020566 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT---------------NFDTE-RLRIIL 242 (324)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS---------------n~~~~-~l~~~~ 242 (324)
.+ .|+. .||+ +.-+|+.... +..+..+.|.++.+.+.+..+|=- .+..+ .++.+.
T Consensus 185 ~~----~l~~--~D~v-IgSvH~~~~~--~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~ 255 (335)
T PRK07945 185 PE----LLDR--LDVV-VASVHSKLRM--DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACR 255 (335)
T ss_pred HH----HHHh--CCEE-EEEeecCCCC--CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHH
Confidence 22 2333 5666 6678986432 245667888888888988888832 12222 234444
Q ss_pred HcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEE
Q 020566 243 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 243 ~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
+.+..+.+|--.. ...+...+++.|++.|+.++
T Consensus 256 e~g~~lEINt~~~---r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 256 EHGTAVEINSRPE---RRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HhCCEEEEeCCCC---CCCChHHHHHHHHHcCCeEE
Confidence 5677677765332 23466789999999999864
No 43
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=68.16 E-value=61 Score=31.47 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred EEeecCCCC----------CCCHHHHHHHHHHHHHcCCccEEEe-------cCCCHHHHHHHHH--cCC------CeEEE
Q 020566 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILE--NGI------PVVSN 251 (324)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G~Ir~iGv-------Sn~~~~~l~~~~~--~g~------~~~~~ 251 (324)
+-||.|+.+ ...+++.++++.+..++.. |.|-+ -|-++++.+++.+ .+. +..+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 678988643 1238889999988865443 23332 2777888877776 355 67999
Q ss_pred eecCCccCCC----c----cHHHHHHHHHcCceEEEccccc------cCcCCCC
Q 020566 252 QVQHSVVDMR----P----QQKMAELCQLTGVKLITYGTVM------GGLLSEK 291 (324)
Q Consensus 252 Q~~yn~l~~~----~----~~~ll~~~~~~gI~via~spLa------~G~Ltg~ 291 (324)
-++||+.... + -..+.+.++++||.+......+ .|.|..+
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 9999996421 1 1267778889999999998775 3566543
No 44
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.62 E-value=22 Score=31.44 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=54.9
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q 252 (324)
+++...+-+ +.|-+-|+..+.+=+ +++ +.++.+++++++..=-.||.-+ .+.++++++++.|..|.
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~------~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITL------RTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--- 80 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC------CCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE---
Confidence 344444433 445566776665543 122 3455556666554334588755 67899999999887553
Q ss_pred ecCCccCCCccHHHHHHHHHcCceEEE
Q 020566 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 253 ~~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
.+| ..+.+++++|+++||.++.
T Consensus 81 --vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 --VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --ECC---CCCHHHHHHHHHcCCCEeC
Confidence 233 3456999999999998773
No 45
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=67.50 E-value=1.3e+02 Score=29.62 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHcCCCee-ecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecc--------c---CCCCCCCCH
Q 020566 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK--------W---VPPPVKMTS 175 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK--------~---~~~~~~~~~ 175 (324)
.+.+.-.+=++.|++.|-..+ |-+. .|+-.++--+.|+..+.+ |.|- . .....+.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~s~vp----------vGTVPiYqa~~~~~~k~~~~~~mt~ 142 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEASPVP----------VGTVPIYQAAVEAARKYGSVVDMTE 142 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCC----------CcChhHHHHHHHHHhcCCChhhCCH
Confidence 455666677899999998644 5553 355333323333332211 2221 0 112236788
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecC
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 255 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~y 255 (324)
+.+.+.+++..+ |-+|.+-+|.-- ..+.++.++++|++ .|+-+-.-.-+..++.+. ..=
T Consensus 143 d~~~~~ie~qa~----~GVDfmTiHcGi--------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n-------~~E 201 (431)
T PRK13352 143 DDLFDVIEKQAK----DGVDFMTIHCGV--------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLHN-------NKE 201 (431)
T ss_pred HHHHHHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHc-------CCc
Confidence 888888888776 458889999741 45667889998854 666655555555544321 122
Q ss_pred CccCCCccHHHHHHHHHcCceEEEccccccCcCCCCc
Q 020566 256 SVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 292 (324)
Q Consensus 256 n~l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~ 292 (324)
||++. .-+.+++.|+++++.+- |+-|+=.|..
T Consensus 202 NPlye-~fD~lLeI~~~yDVtlS----LGDglRPG~i 233 (431)
T PRK13352 202 NPLYE-HFDYLLEILKEYDVTLS----LGDGLRPGCI 233 (431)
T ss_pred CchHH-HHHHHHHHHHHhCeeee----ccCCcCCCcc
Confidence 44432 23489999999998874 4545444433
No 46
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.31 E-value=1.1e+02 Score=28.39 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeec----------CCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDM----------ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDT----------A~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i 178 (324)
+.++..++.+.+.+.|+..||. ...|+...+.+-+.++.....- ++-|.-|+.+. .+.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~------~~Pv~vKl~~~-----~~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT------DVPVIVKLTPN-----VTDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc------CCCEEEEeCCC-----chhH
Confidence 4577788888888899999986 2335555566666666653321 23345555442 1222
Q ss_pred HHhHHHHHhhcCCCccceEE------eecCC--C---------C-CCCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHH
Q 020566 179 RESIDVSRRRMDVPCLDMLQ------FHWWD--Y---------S-NPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLR 239 (324)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~------lH~p~--~---------~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~ 239 (324)
. .+-+.++..|.|.|++.- +|.-. + . .....-.++.+.++++.=.+.-||+... +++.+.
T Consensus 169 ~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 V-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred H-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2 333457788988887641 12100 0 0 0001225677778877667888998875 788999
Q ss_pred HHHHcCCCeEEEeecCCccC-C----CccHHHHHHHHHcCc
Q 020566 240 IILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (324)
Q Consensus 240 ~~~~~g~~~~~~Q~~yn~l~-~----~~~~~ll~~~~~~gI 275 (324)
++++.| .+.+|+-=.++. + ...+++.++.+++|.
T Consensus 248 ~~l~~G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 248 EFLMAG--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHcC--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 998877 466665433322 1 113467777777774
No 47
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.92 E-value=56 Score=30.03 Aligned_cols=105 Identities=8% Similarity=0.046 Sum_probs=59.1
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCC-----CHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHH
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 243 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~-----~~~e~~~aL~~l~~~G~Ir~iGvSn~~---~~~l~~~~~ 243 (324)
.++.+...+ +-+.|.++|+|+|++-+......... ...+.++.+.+..+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 456665555 44559999999999986544321100 01455655555543 346666666443 466666666
Q ss_pred cCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEc
Q 020566 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (324)
Q Consensus 244 ~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~ 280 (324)
.+++..-+....+- ...-.+.+++++++|+.+...
T Consensus 94 ~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEEEE
Confidence 65443223322222 112337888999999876643
No 48
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=66.41 E-value=75 Score=31.40 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=74.5
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC--CccEEEecC--CCHHHHHHHHHcCCCeE
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALTN--FDTERLRIILENGIPVV 249 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGvSn--~~~~~l~~~~~~g~~~~ 249 (324)
+++...+-+++.+++ .+++++..|-+. +-|+.+.++.+.- .+.-+|==+ .++..++.+++.+ ..+
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~-----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~-a~d 331 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE-----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMG-VAN 331 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc-----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhC-CCC
Confidence 444444444444433 467777777432 2456666776654 555544332 2588999988765 377
Q ss_pred EEeecCCccCCC-ccHHHHHHHHHcCceEE-EccccccC----------cCCCCcCCCCCCCCCCCCCCCCccHHHHHHh
Q 020566 250 SNQVQHSVVDMR-PQQKMAELCQLTGVKLI-TYGTVMGG----------LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRV 317 (324)
Q Consensus 250 ~~Q~~yn~l~~~-~~~~ll~~~~~~gI~vi-a~spLa~G----------~Ltg~~~~~~~~~~~~~~~~~~~~~~k~~~l 317 (324)
++|+..+-.-.- .-.++.+.|+.+|+.++ .......+ +-++.. ..+...+.+...||-+|
T Consensus 332 ~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~i--------k~g~~~~~er~~kyn~l 403 (425)
T TIGR01060 332 SILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQI--------KTGSLSRSERIAKYNQL 403 (425)
T ss_pred EEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCcc--------ccCCCchHHHHHHHHHH
Confidence 778877643211 22378999999999855 45533322 222211 12445667888888887
Q ss_pred hc
Q 020566 318 QR 319 (324)
Q Consensus 318 ~~ 319 (324)
++
T Consensus 404 l~ 405 (425)
T TIGR01060 404 LR 405 (425)
T ss_pred HH
Confidence 64
No 49
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.15 E-value=69 Score=29.21 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=67.4
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEE-eecCCCCCC----CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNP----GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~----~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (324)
.+.+.+.+..++.+ +-|.|+||+=. --+|+.... +.+.....++.+++.-.+ -|.+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 46677776666554 66899999963 334443211 133455666666655333 37888999999999999873
Q ss_pred eEEEeecCCccCCCccHHHHHHHHHcCceEEEcccc
Q 020566 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spL 283 (324)
+-+|-+. ... .+.++++.++++|..++.+-.-
T Consensus 98 ~iINdis--~~~--~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 98 DIINDVS--GGR--GDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred CEEEeCC--CCC--CChHHHHHHHHcCCCEEEECcC
Confidence 3344332 211 1258999999999999987643
No 50
>PRK13796 GTPase YqeH; Provisional
Probab=65.97 E-value=1.2e+02 Score=29.27 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcC---CCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHH
Q 020566 108 IDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~G---in~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (324)
.+.++..++++..-+.- +-.+|..+.-+.-...+.+... ++. .+.|.+|.--.+.....+.+.+-++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-----viLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-----EEEEEEchhhCCCccCHHHHHHHHHH
Confidence 45566666666665544 3456766644442222333321 211 56788986322223345666666676
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (324)
-.+.+|....|++.+-.-.. ..+.+.++.+.+..+.+.+--+|.+|.....+-..+
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g--~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKG--HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHhcCCCcCcEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 67777876567777754432 247888888888877778889999999987665543
No 51
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=65.85 E-value=49 Score=29.37 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=59.5
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-ccHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQ 271 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~-~~~~ll~~~~ 271 (324)
.++.++..|-+.. -++.+.++.+...+. +.+=|.++.+.+.++++.+ .++++|+..+..-.- .-.++.++|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5677777664332 355667788877666 4455667788887777765 378888876653211 1238899999
Q ss_pred HcCceEEEccccccC
Q 020566 272 LTGVKLITYGTVMGG 286 (324)
Q Consensus 272 ~~gI~via~spLa~G 286 (324)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998876544
No 52
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.74 E-value=63 Score=29.46 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=56.3
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCC----CCCHHHHHHHHHHHHHc-CCccEEEec---CCCHHHHHHHHH
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 243 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~----~~~~~e~~~aL~~l~~~-G~Ir~iGvS---n~~~~~l~~~~~ 243 (324)
.++.+...+ +-+.|.++|+++|++-+....... .+.....++.++.+++. +.++...++ ..+...++.+.+
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 345555444 444588899999999755321100 00012245556666443 346665554 334566777776
Q ss_pred cCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEc
Q 020566 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (324)
Q Consensus 244 ~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~ 280 (324)
.+++ .+.+-.+.-+...-.+.+++++++|+.+...
T Consensus 97 ~g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 6643 3333332211112337888888988766544
No 53
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.98 E-value=88 Score=28.43 Aligned_cols=99 Identities=9% Similarity=0.053 Sum_probs=61.3
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+ +-+.|.++|+++|++-+ |.. -+.-++.++++.+.+ .++..+.+..+.+.++.+.+.+++...
T Consensus 16 ~~~~~~k~~-i~~~L~~~Gv~~iE~g~---p~~----~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEKLA-IARALDEAGVDEIEVGI---PAM----GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEec---CCC----CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 445555544 44559999999999962 321 123356667777643 477777887888889888887755333
Q ss_pred EeecCCcc------CCCcc------HHHHHHHHHcCceEE
Q 020566 251 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 278 (324)
Q Consensus 251 ~Q~~yn~l------~~~~~------~~ll~~~~~~gI~vi 278 (324)
+-+..|.. +...+ .+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 33323321 11111 268889999998754
No 54
>PTZ00081 enolase; Provisional
Probab=64.86 E-value=73 Score=31.72 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC--CccEEEe--cCCCHHHHHHHHHcCCCe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGv--Sn~~~~~l~~~~~~g~~~ 248 (324)
.+++.+.+-+.+.++.++ +++|..|-+. +-|+.+.+|.++- .|.-+|= +..+++.+..+++.+ ..
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~-----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~-aa 349 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ-----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKK-AC 349 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc-----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhC-CC
Confidence 577777777777777664 5667766432 3455556666553 5655554 345689999998875 37
Q ss_pred EEEeecCCccCCC-ccHHHHHHHHHcCceEEE-ccc----------cccCcCCCCcCCCCCCCCCCCCCCCCccHHHHHH
Q 020566 249 VSNQVQHSVVDMR-PQQKMAELCQLTGVKLIT-YGT----------VMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKR 316 (324)
Q Consensus 249 ~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via-~sp----------La~G~Ltg~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (324)
+++|+..|-+-.- .-.++...|+++|+.++. ... |+-|+=++.. ..+.+-+.+...||-+
T Consensus 350 d~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAVa~~~~~i--------K~G~~~r~er~aKyN~ 421 (439)
T PTZ00081 350 NALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQI--------KTGAPCRSERLAKYNQ 421 (439)
T ss_pred CEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHHHcCCCce--------ecCCCcchHHHHHHHH
Confidence 7777777743211 123799999999999876 332 2222222222 2356677888898888
Q ss_pred hhc
Q 020566 317 VQR 319 (324)
Q Consensus 317 l~~ 319 (324)
|++
T Consensus 422 llr 424 (439)
T PTZ00081 422 LLR 424 (439)
T ss_pred HHH
Confidence 764
No 55
>PRK00077 eno enolase; Provisional
Probab=64.29 E-value=90 Score=30.84 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC--CccEEEec--CCCHHHHHHHHHcCCCe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALT--NFDTERLRIILENGIPV 248 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGvS--n~~~~~l~~~~~~g~~~ 248 (324)
++++...+.+.+.++. .++++|..|-+.. -|+.+.+|.++- +|.-+|== ..+++.++++++.+ ..
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~-----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~-a~ 329 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN-----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG-AA 329 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc-----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC-CC
Confidence 4666666666666555 4577787775332 355556666653 56554433 24689999998865 37
Q ss_pred EEEeecCCccCCC-ccHHHHHHHHHcCceEEE-ccccccC----------cCCCCcCCCCCCCCCCCCCCCCccHHHHHH
Q 020566 249 VSNQVQHSVVDMR-PQQKMAELCQLTGVKLIT-YGTVMGG----------LLSEKFLDTNLSIPFAGPPLNTPSLQKYKR 316 (324)
Q Consensus 249 ~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via-~spLa~G----------~Ltg~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (324)
+++|+..+-+-.- .-.++...|+.+|+.++. ++....+ .-++..+ .+.+-+.+...||-+
T Consensus 330 d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~~ik--------~G~~~~~er~~k~n~ 401 (425)
T PRK00077 330 NSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIK--------TGSLSRSERIAKYNQ 401 (425)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCcccc--------CCCCcchHHHHHHHH
Confidence 7778777653221 123899999999997654 5443322 1122111 244456778888877
Q ss_pred hhc
Q 020566 317 VQR 319 (324)
Q Consensus 317 l~~ 319 (324)
|++
T Consensus 402 ll~ 404 (425)
T PRK00077 402 LLR 404 (425)
T ss_pred HHH
Confidence 764
No 56
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=63.42 E-value=29 Score=30.70 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=43.4
Q ss_pred HhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCC
Q 020566 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn 256 (324)
+..+|.||+-+.+... .+.....+ ....+.+.. .+.++.+||. |-+++.+.++.+. ..++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 4569999999974332 22222233 333333322 3568899995 8888999988764 46899999864
No 57
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=62.16 E-value=93 Score=28.56 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=60.4
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+-+ +.|.++|++.|.+-. |.. ..+.++..+.+.+.++ .+-.+....+.+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~----~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIA-KALDAFGVDYIELTS---PAA----SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEEC---CCC----CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 34555554444 459999999888873 432 2334555555555454 44455667788889999888765333
Q ss_pred EeecCCcc------CCCcc------HHHHHHHHHcCceEEEcc
Q 020566 251 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLITYG 281 (324)
Q Consensus 251 ~Q~~yn~l------~~~~~------~~ll~~~~~~gI~via~s 281 (324)
+-+..|.. .+..+ .+.+++++++|+.+...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33322221 11121 256788999998765543
No 58
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.42 E-value=24 Score=31.14 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEee
Q 020566 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQV 253 (324)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q~ 253 (324)
.+... .+-+.|-+-|+..+.+=+ - .+...+.++.+.+-. -=-.||+-+ .+.++++.+.+.|..|.+
T Consensus 19 ~~~a~-~~~~al~~gGi~~iEiT~---~---t~~a~~~I~~l~~~~---p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 19 PEDAV-PIAEALIEGGIRAIEITL---R---TPNALEAIEALRKEF---PDLLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp GGGHH-HHHHHHHHTT--EEEEET---T---STTHHHHHHHHHHHH---TTSEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred HHHHH-HHHHHHHHCCCCEEEEec---C---CccHHHHHHHHHHHC---CCCeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 34443 334455566766555442 1 222444544444333 224588865 678999999998876643
Q ss_pred cCCccCCCccHHHHHHHHHcCceEEE
Q 020566 254 QHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 254 ~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
+| ..+.+++++|+++||.++.
T Consensus 86 --SP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --SP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --ES---S--HHHHHHHHHHTSEEEE
T ss_pred --CC---CCCHHHHHHHHHcCCcccC
Confidence 22 3455999999999999885
No 59
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=61.11 E-value=45 Score=32.61 Aligned_cols=81 Identities=7% Similarity=-0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD 190 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg 190 (324)
.....++++|++.|++++|||...-.- .-+....++. .+.+..-.+-.| +.+--.+...+++--. .
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~A----------git~v~~~G~dP-Gi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKA----------GITAVLGCGFDP-GITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHc----------CeEEEcccCcCc-chHHHHHHHHHHHhhc--c
Confidence 345689999999999999999865431 2222222221 111222111111 2222222222222222 5
Q ss_pred CCccceEEeecCCCC
Q 020566 191 VPCLDMLQFHWWDYS 205 (324)
Q Consensus 191 ~dyiDl~~lH~p~~~ 205 (324)
+++||+|..+.|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999988765
No 60
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.91 E-value=1.6e+02 Score=28.16 Aligned_cols=149 Identities=9% Similarity=0.009 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCCeeecCCCCCC---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 110 RDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 110 ~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
.++..+.+...++.|++.|=.=-.... ..+.+ +++++.-.+ ++.+.-.. + ..++.+...+-++ .|
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v-~air~~~g~-------~~~l~vDa-N--~~~~~~~A~~~~~-~l 209 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVV-RSIRQAVGD-------GVGLMVDY-N--QSLTVPEAIERGQ-AL 209 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHH-HHHHHhhCC-------CCEEEEeC-C--CCcCHHHHHHHHH-HH
Confidence 456666777778889886632111111 11222 233332111 22222222 1 2456665443333 23
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccH
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQ 264 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~ 264 (324)
+.+ ++.++..|-+. +-++.+.++++.--|. +.|=+.++...+..+++.+ .++++|+..+-.-. ..-.
T Consensus 210 ~~~-----~i~~iEeP~~~-----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~i~~~~~~~GGit~~~ 278 (355)
T cd03321 210 DQE-----GLTWIEEPTLQ-----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDLVMPDLMKIGGVTGWL 278 (355)
T ss_pred HcC-----CCCEEECCCCC-----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCeEecCHhhhCCHHHHH
Confidence 443 55566666432 2456677787775543 5666778999999998865 38888887665321 1123
Q ss_pred HHHHHHHHcCceEEEcc
Q 020566 265 KMAELCQLTGVKLITYG 281 (324)
Q Consensus 265 ~ll~~~~~~gI~via~s 281 (324)
++.+.|+.+|+.++.+.
T Consensus 279 ~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 279 RASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHcCCeecccc
Confidence 89999999999987654
No 61
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=60.87 E-value=64 Score=28.72 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=53.0
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEec-CCCHHHHHHHHHcCCCeEEEeecCCccCCCccH
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQ 264 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~ 264 (324)
..+|.||+-+.+--. ++... ..+...++.+.-. ++.+||. |.+.+.+.++++. ..++.+|++-.. +.
T Consensus 19 ~~~gad~iG~If~~~-SpR~V----s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 19 AKAGADYIGFIFVPK-SPRYV----SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHcCCCEEEEEEcCC-CCCcC----CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----CH
Confidence 468999988876542 22222 2233345555554 8899986 7788888888765 469999988652 34
Q ss_pred HHHHHHHHcC-ceEEEc
Q 020566 265 KMAELCQLTG-VKLITY 280 (324)
Q Consensus 265 ~ll~~~~~~g-I~via~ 280 (324)
+.++..++.. +.++-.
T Consensus 88 ~~~~~l~~~~~~~v~ka 104 (208)
T COG0135 88 EYIDQLKEELGVPVIKA 104 (208)
T ss_pred HHHHHHHhhcCCceEEE
Confidence 6666666654 555433
No 62
>PRK07328 histidinol-phosphatase; Provisional
Probab=60.85 E-value=1.3e+02 Score=27.37 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=56.5
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCC---C---------CCHHHHHH----HHHHHHHcCCccEEEecCC----C-----
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDALN----HLTDLKEEGKIKTVALTNF----D----- 234 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~---~---------~~~~e~~~----aL~~l~~~G~Ir~iGvSn~----~----- 234 (324)
+.+++.|++-..||+ +.-+|+.+.. . .+.++.++ .+.++.+.|.+..+|=-.. +
T Consensus 95 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~~ 173 (269)
T PRK07328 95 EFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPRE 173 (269)
T ss_pred HHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCch
Confidence 444556667667776 7778985321 0 11233333 4777888898887773321 1
Q ss_pred --H----HHHHHHHHcCCCeEEEeec--CCccCCCccHHHHHHHHHcCceEE
Q 020566 235 --T----ERLRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 235 --~----~~l~~~~~~g~~~~~~Q~~--yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
. +.++.+.+.|..+.+|--. +..-+..+..++++.|++.|+.++
T Consensus 174 ~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 174 DLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 1 1233344567667776532 222234456689999999998754
No 63
>PRK13753 dihydropteroate synthase; Provisional
Probab=60.84 E-value=1.4e+02 Score=27.75 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEe-ecCCCCCCC----HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~l-H~p~~~~~~----~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (324)
++.+.+.+..++.+ .-|.|.||+=-- .+|+..... +..+...++.+++.+. .|.|-+|.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 35566666666544 558888888542 345443222 2334567788887753 488999999999999998865
Q ss_pred eEEEeecCCccCCCccHHHHHHHHHcCceEEEcccc
Q 020566 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spL 283 (324)
+ +|-+ +-+ .+.++.+.+.+.+++++.+--.
T Consensus 99 i-INDV--sg~---~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 Y-LNDI--QGF---PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred E-EEeC--CCC---CchHHHHHHHHcCCCEEEEecC
Confidence 3 2222 222 2457888999999998887654
No 64
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.63 E-value=32 Score=30.65 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC---ccEEEecC-CCHHHHHHHHHcCCCeE
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 249 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~---Ir~iGvSn-~~~~~l~~~~~~g~~~~ 249 (324)
+.+.... +-+.|.+-|+..+.+=+= .+ ..++.+++++++-. =-.||+-+ .+.++++.+.+.|..|.
T Consensus 23 ~~~~a~~-~~~al~~~Gi~~iEit~~------~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALK-ISLAVIKGGIKAIEVTYT------NP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEECC------Cc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 3344443 444566677776666531 22 25555566665421 13577755 67899999999887664
Q ss_pred EEeecCCccCCCccHHHHHHHHHcCceEEE
Q 020566 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 250 ~~Q~~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
+ +| ....+++++|+++||.++.
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 4 33 3456899999999998874
No 65
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.01 E-value=65 Score=28.53 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=42.1
Q ss_pred HhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCC
Q 020566 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn 256 (324)
+..+|.|++-+.+... .+..... +....+.+.. .+.+..+||. |-+++.+.++.+. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~-S~R~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPK-SPRYVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCC-CCCcCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 3468999999874322 2222212 3333333222 3568999996 7788888888765 36899999754
No 66
>PLN00191 enolase
Probab=59.29 E-value=97 Score=31.03 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=81.5
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEe-c-CCCHHHHHHHHHcCCCeEE
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL-T-NFDTERLRIILENGIPVVS 250 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGv-S-n~~~~~l~~~~~~g~~~~~ 250 (324)
.+++...+-+...+++ .++.+|..|-+. +-|+.+.++.++.+|.-+|= + ..++..+.++++.+ ..++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 3555555555544433 457777777432 34666788888888877772 2 25688899888765 3677
Q ss_pred EeecCCccCCC-ccHHHHHHHHHcCceEEEcc-ccccCcC--CCCcCCCCCCCCCCCCCCCCccHHHHHHhhc
Q 020566 251 NQVQHSVVDMR-PQQKMAELCQLTGVKLITYG-TVMGGLL--SEKFLDTNLSIPFAGPPLNTPSLQKYKRVQR 319 (324)
Q Consensus 251 ~Q~~yn~l~~~-~~~~ll~~~~~~gI~via~s-pLa~G~L--tg~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 319 (324)
+++..|-+-.- .-.++.+.|+++|+.++.-. ....+.- ..-.-.-....-..+.+-+.+...||-+|++
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llr 436 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLR 436 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHH
Confidence 77776643221 22379999999999997643 3333321 1000000000012466778888999888775
No 67
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=59.20 E-value=1.6e+02 Score=27.79 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHc-CCCeeecCCCCCC----hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhH
Q 020566 108 IDRDDAVDAMLRYADA-GLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~-Gin~fDTA~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (324)
.+.++..+++++.-+. ||+-+--+- |. +...|-+.++....- ..+..+.+.|+... ..+..+.+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v----~~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPV----ADPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCcc----cChhhcCHHH
Confidence 3556777777766544 887552221 32 223345555443221 12224566776421 1233444455
Q ss_pred HHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccE----E--EecCCCHHHHHHHHH
Q 020566 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT----V--ALTNFDTERLRIILE 243 (324)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~----i--GvSn~~~~~l~~~~~ 243 (324)
-+.|++.|.. ..+.+|...+... .++++++++.+++.|..-. + |+ |.+.+.+.++.+
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 5667777742 3577787554433 5789999999999996221 1 33 577777666553
No 68
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.16 E-value=1.1e+02 Score=27.51 Aligned_cols=90 Identities=8% Similarity=0.090 Sum_probs=55.3
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHH-HHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEE
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTD-LKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 251 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~-l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~ 251 (324)
+++...+ +-+.|-+-|+..+.+=+ ..+.-.+.++.|.+ ..++.-=-.||+-+ .++++++.+++.|..|.+
T Consensus 25 ~~~~a~~-~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV- 96 (222)
T PRK07114 25 DVEVAKK-VIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV- 96 (222)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 3344443 34456677877666653 22334455555532 22332212588755 678999999998875532
Q ss_pred eecCCccCCCccHHHHHHHHHcCceEE
Q 020566 252 QVQHSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 252 Q~~yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
+| ..+.+++++|+++||.++
T Consensus 97 ----sP---~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 97 ----TP---LFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred ----CC---CCCHHHHHHHHHcCCCEe
Confidence 32 345699999999999877
No 69
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.73 E-value=28 Score=33.41 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=56.1
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHH
Q 020566 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 272 (324)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~ 272 (324)
++.++..|-+. +.++.+.+|.++..+. +.|=|-++...+.++++.+ .++++|+.....-. ..-.++...|++
T Consensus 215 ~~~~iEeP~~~-----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~ 288 (365)
T cd03318 215 GVELIEQPVPR-----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEA 288 (365)
T ss_pred CcceeeCCCCc-----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHH
Confidence 45566666422 2467778888877666 6677778899999998875 37778887554311 123388999999
Q ss_pred cCceEEEcc
Q 020566 273 TGVKLITYG 281 (324)
Q Consensus 273 ~gI~via~s 281 (324)
+|+.++..+
T Consensus 289 ~gi~~~~~~ 297 (365)
T cd03318 289 AGIALYGGT 297 (365)
T ss_pred cCCceeecC
Confidence 999998654
No 70
>PRK05588 histidinol-phosphatase; Provisional
Probab=57.61 E-value=1.5e+02 Score=26.80 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCC-----C---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhH
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYG-----P---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG-----~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (324)
....+.++.|.+.|+..+ .+++.- . ... +-+.++...+-+ . .++.++--.. +.++ ..+.+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~-~~~y~~~i~~~~--~--~~I~~GiE~~-----~~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFD-VDSYFNKYSKYR--N--NKLLLGIELG-----MEKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccC-HHHHHHHHHHHh--c--CCcceEEEec-----ccCC-CHHHH
Confidence 346789999999999988 766531 0 000 112222211111 1 1233222221 1112 24555
Q ss_pred HHHHhhcCCCccceEEeecCCCCC---------CCHHHH----HHHHHHHHH-cCCccEEEe---c----CC--------
Q 020566 183 DVSRRRMDVPCLDMLQFHWWDYSN---------PGYLDA----LNHLTDLKE-EGKIKTVAL---T----NF-------- 233 (324)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~---------~~~~e~----~~aL~~l~~-~G~Ir~iGv---S----n~-------- 233 (324)
++.|++...||+ +.-+|+.+... .+.++. ++.+.++++ .|++..+|= - .+
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 677777787777 78889853211 112333 356677776 465655551 1 00
Q ss_pred -CHHHH----HHHHHcCCCeEEEeecCCc-cCCCccHHHHHHHHHcCceEEEcc
Q 020566 234 -DTERL----RIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 234 -~~~~l----~~~~~~g~~~~~~Q~~yn~-l~~~~~~~ll~~~~~~gI~via~s 281 (324)
-...+ +.+.+.|..+.+|--.+.. ....+...+++.|++.|+.+++.+
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lg 216 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLG 216 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEE
Confidence 01222 3333456667766532211 112233467888888887754443
No 71
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=56.06 E-value=1.2e+02 Score=28.93 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHHhhcCCCccceEEeec-CCCCCCCHHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHHc--CCCeEEEeecCC
Q 020566 184 VSRRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHS 256 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~-p~~~~~~~~e~~~aL~~l~~~G~Ir~-iGvSn~---~~~~l~~~~~~--g~~~~~~Q~~yn 256 (324)
+.-+.+|.|+||+-+.-. |+..+...++....++...+.=.+-- |..|.. +++.+++.++. |-++-++-....
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e 162 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED 162 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH
Confidence 344588988888875322 32212224444444444433333333 666644 78888888773 334544443321
Q ss_pred ccCCCccHHHHHHHHHcCceEEEccccc
Q 020566 257 VVDMRPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 257 ~l~~~~~~~ll~~~~~~gI~via~spLa 284 (324)
.-+.+.+.|+++|..+++.+|..
T Consensus 163 -----n~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 163 -----NYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred -----HHHHHHHHHHHhCCeEEEEcHHH
Confidence 12379999999999999998653
No 72
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.32 E-value=1.4e+02 Score=30.10 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHc--CCCeEEEeecCCccCCCccHHHHHHHHHcCc
Q 020566 209 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 275 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~--g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI 275 (324)
.++..++++.+++.|.... +|+-+-+.+.+++.++. ..+++..+ ++++...+..++.+.+++.+.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcc
Confidence 6778889999999996433 56667777777765542 23444333 355556778888888887754
No 73
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=54.95 E-value=77 Score=26.33 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=45.9
Q ss_pred eeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
+..+.|+-|++. ...++.|++.+.++.+.+. ....|++++...... .++.+..+.|.++.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 556777777654 5678888888888887663 457899999998766 5577777777776654
No 74
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.71 E-value=1.6e+02 Score=29.79 Aligned_cols=111 Identities=20% Similarity=0.137 Sum_probs=57.7
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHH--------------HcCCccEEEecCC------
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK--------------EEGKIKTVALTNF------ 233 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~--------------~~G~Ir~iGvSn~------ 233 (324)
.++-|-+.++...++++.+.++++.++.|+.........-.+++.++ +.+.|--||.++.
T Consensus 96 ~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~ 175 (511)
T TIGR01278 96 TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRH 175 (511)
T ss_pred hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHH
Confidence 44556666666666676656788888888654432222222222222 2345778888763
Q ss_pred CHHHHHHHHHc-CCCeEEEee--------------cCCcc-CCCccHHHHHHH-HHcCceEEEccccc
Q 020566 234 DTERLRIILEN-GIPVVSNQV--------------QHSVV-DMRPQQKMAELC-QLTGVKLITYGTVM 284 (324)
Q Consensus 234 ~~~~l~~~~~~-g~~~~~~Q~--------------~yn~l-~~~~~~~ll~~~-~~~gI~via~spLa 284 (324)
+...++.+++. |+.+.++-. .+|+. ++......-++. ++.|++++...|++
T Consensus 176 D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 176 DLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 33455566553 544332211 11221 111112344444 34599988777775
No 75
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=54.08 E-value=78 Score=30.49 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=58.7
Q ss_pred HHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
-+-.+-+.|.++|+++|++-..-.|.. .|...+.-+.++.+++...++..++. .+...++.+++.|.....+-+..|.
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~-vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~g~~~v~i~~s~Sd 146 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKW-VPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAAGAKEVAVFASASE 146 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCccc-ccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHcCcCEEEEEEecCH
Confidence 445566669999999999874434321 22222233333444443345555664 5888999999887543333322222
Q ss_pred c------CCCcc------HHHHHHHHHcCceEEEcc
Q 020566 258 V------DMRPQ------QKMAELCQLTGVKLITYG 281 (324)
Q Consensus 258 l------~~~~~------~~ll~~~~~~gI~via~s 281 (324)
. +...+ .+++++++++|+.+.++-
T Consensus 147 ~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 147 SFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1 11221 268899999999886444
No 76
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=53.94 E-value=29 Score=30.64 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=58.3
Q ss_pred HhhcCCCccceEEee-cCCCCCCC----HHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCcc
Q 020566 186 RRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (324)
Q Consensus 186 L~rLg~dyiDl~~lH-~p~~~~~~----~~e~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l 258 (324)
+..-|.|+||+=--- +|...... ++.....++.+++ .+. -|-+-+++++.++++++.|.++..+...+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc-
Confidence 345699999996321 23222111 3334555555554 233 4677789999999999988766544444432
Q ss_pred CCCccHHHHHHHHHcCceEEEcccc
Q 020566 259 DMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 259 ~~~~~~~ll~~~~~~gI~via~spL 283 (324)
..++++.++++|..++++---
T Consensus 105 ----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ----STTHHHHHHHHTSEEEEESES
T ss_pred ----cchhhhhhhcCCCEEEEEecc
Confidence 458999999999999987654
No 77
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=53.75 E-value=85 Score=30.65 Aligned_cols=83 Identities=7% Similarity=0.014 Sum_probs=60.5
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~ 271 (324)
.++.++..|-+. +-++.+.+|++.-.+. +.|=|-++...++.+++.+ -++++|+...-.-. ..-.++.+.|+
T Consensus 232 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~ 305 (404)
T PRK15072 232 YRLFWLEDPTPA-----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAA 305 (404)
T ss_pred cCCcEEECCCCc-----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHH
Confidence 577777777432 2356678888887666 6777889999999998876 38888887664321 12338999999
Q ss_pred HcCceEEEccc
Q 020566 272 LTGVKLITYGT 282 (324)
Q Consensus 272 ~~gI~via~sp 282 (324)
.+|+.++.++.
T Consensus 306 ~~gi~~~~h~~ 316 (404)
T PRK15072 306 LYQVRTGSHGP 316 (404)
T ss_pred HcCCceeeccC
Confidence 99999998654
No 78
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=53.69 E-value=34 Score=32.93 Aligned_cols=100 Identities=7% Similarity=-0.024 Sum_probs=65.1
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+-+ +.|+. .++.++..|-+. +-++.+.++++...+. +.|=|-++...+.++++.+ ..++
T Consensus 197 ~~~~~~A~~~~-~~l~~-----~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~ 264 (368)
T TIGR02534 197 AWDERTALHYL-PQLAD-----AGVELIEQPTPA-----ENREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADV 264 (368)
T ss_pred CCCHHHHHHHH-HHHHh-----cChhheECCCCc-----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCE
Confidence 45665544322 33333 355666666432 2366677788877666 6787888999999988765 3778
Q ss_pred EeecCCccCC-CccHHHHHHHHHcCceEEEcccc
Q 020566 251 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 251 ~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spL 283 (324)
+|+...-.-. ..-.++...|+.+|+.++..+.+
T Consensus 265 ~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 265 FALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 8887664321 12237999999999999876543
No 79
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=53.20 E-value=2e+02 Score=28.10 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=56.9
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-ccHHHHHHHHHc
Q 020566 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 273 (324)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~-~~~~ll~~~~~~ 273 (324)
|-+.+..|. +..++..++.+.+.+.++.+-+...+.+.++++++...+..++..+-||.-.. .-+++.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 555554442 44555555665555667777776567788887765444556666666765332 234899999999
Q ss_pred CceEEEccccccCc
Q 020566 274 GVKLITYGTVMGGL 287 (324)
Q Consensus 274 gI~via~spLa~G~ 287 (324)
|+.++.=...+.|.
T Consensus 175 gi~vIvD~a~a~~~ 188 (405)
T PRK08776 175 GALTVVDNTFLSPA 188 (405)
T ss_pred CCEEEEECCCcccc
Confidence 99999777766553
No 80
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=53.13 E-value=77 Score=31.21 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=67.5
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcC
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENG 245 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~------G~Ir~iGvSn~~~~~l~~~~~~g 245 (324)
.++++...+-+.. |++.--+ +++ ++..|-+... -++.++.+.+|+++ ..--..+=|.++.+.+.++++.+
T Consensus 244 ~~~~~~ai~~l~~-l~~~~~~-~~~-~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~ 319 (408)
T TIGR01502 244 GVDIKAMADYIQT-LAEAAKP-FHL-RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK 319 (408)
T ss_pred CCCHHHHHHHHHH-HHHhCcc-CCe-EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC
Confidence 3466654443332 2221111 345 7777754322 23457777777766 33335667788999999998876
Q ss_pred CCeEEEeecCCccCCC-ccHHHHHHHHHcCceEEEcccc
Q 020566 246 IPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via~spL 283 (324)
-.+++|+..+-+-.- .-.++.++|+++||.++..+..
T Consensus 320 -a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 320 -AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred -CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 378888887643211 2348999999999999987665
No 81
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=52.96 E-value=60 Score=29.48 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=73.0
Q ss_pred CCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 020566 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (324)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (324)
.++..+.+.+......+-..+-+++|.|-|=.|-.++.-.|+..|++++-|.|+++|-+-.- -++-++-..+.+.+.|
T Consensus 74 PNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee~G- 151 (262)
T COG2022 74 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEEAG- 151 (262)
T ss_pred CCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHhcC-
Confidence 34455778888888888899999999999988887777777789999999999999975332 2344555556666554
Q ss_pred CeEEEeecCCccCCCc---cH-HHHHHHHHcCceEEEcc
Q 020566 247 PVVSNQVQHSVVDMRP---QQ-KMAELCQLTGVKLITYG 281 (324)
Q Consensus 247 ~~~~~Q~~yn~l~~~~---~~-~ll~~~~~~gI~via~s 281 (324)
..+++---+|+-... .. .+.-...+.++++|.-.
T Consensus 152 -caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDA 189 (262)
T COG2022 152 -CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDA 189 (262)
T ss_pred -ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeC
Confidence 333333333331100 11 23334445577777543
No 82
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=52.61 E-value=2.2e+02 Score=27.40 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q 252 (324)
.+.+..-..+-+-|+..|+|+|++-.-++.... . +. ....+++++.=.+--+++..++++..+++++.|. .+.+.
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~-~-~~--~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~-~D~V~ 319 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGE-P-YS--DAFREKVRARFHGVIIGAGAYTAEKAETLIGKGL-IDAVA 319 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCc-c-cc--HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC-CCEEE
Confidence 454443334555667778888887642221111 1 11 1112333333233345555678888888888763 44444
Q ss_pred e
Q 020566 253 V 253 (324)
Q Consensus 253 ~ 253 (324)
+
T Consensus 320 ~ 320 (362)
T PRK10605 320 F 320 (362)
T ss_pred E
Confidence 3
No 83
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.63 E-value=1.7e+02 Score=28.19 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+ +-+.|.++|+++|++- +|.. -+.-++.++++.+.+. .+..+++..+.+.++.+.+.|.+...
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~----~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAM----GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC----CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 345554444 4555999999999985 3432 1234666777777644 77778887888899988887754433
Q ss_pred EeecCCcc------CCCcc------HHHHHHHHHcCceEE
Q 020566 251 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 278 (324)
Q Consensus 251 ~Q~~yn~l------~~~~~------~~ll~~~~~~gI~vi 278 (324)
+-+..|.. ....+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33333321 11112 268889999998754
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=51.48 E-value=2.1e+02 Score=26.80 Aligned_cols=154 Identities=8% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCC---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHH
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (324)
..+.++..++++.+.+.|++.|.-.- |. ... +-+.++..... .-...+.++|-.. .+.+ .-
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~---~~~~~i~itTNG~---------ll~~-~~ 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAAL---PGIRDLALTTNGY---------LLAR-RA 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhc---CCCceEEEEcCch---------hHHH-HH
Confidence 45778999999999999998776542 32 111 23334332211 0012455665421 1112 22
Q ss_pred HHHhhcCCCccceEEeecCCCC-------CCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHc--CCCeEE
Q 020566 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 250 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (324)
..|...|++.|- +-||..+++ ...+++++++++.+++.|. |..+.+-+.+.+++.++.+. ..++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 345555665442 334444321 1237889999999999986 23444445666677665541 223444
Q ss_pred EeecCCccCCC---------ccHHHHHHHHHcCceE
Q 020566 251 NQVQHSVVDMR---------PQQKMAELCQLTGVKL 277 (324)
Q Consensus 251 ~Q~~yn~l~~~---------~~~~ll~~~~~~gI~v 277 (324)
.-++|.++... ...++++..+++|+.+
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTL 226 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcc
Confidence 45555554321 1236888888876544
No 85
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=51.47 E-value=1.9e+02 Score=27.08 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=54.2
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc--CCccEE-------EecCCCHHHHHHHH
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTV-------ALTNFDTERLRIIL 242 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir~i-------GvSn~~~~~l~~~~ 242 (324)
..+++.+.+++.+-+++-+.|.||+=.=+....+........++|.+|+++ ++.-.+ |+.......++.+.
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHHH
Confidence 458899999999999999999999965443221222245677778888876 332222 22223334566666
Q ss_pred HcCCCeEEEeec-CCc
Q 020566 243 ENGIPVVSNQVQ-HSV 257 (324)
Q Consensus 243 ~~g~~~~~~Q~~-yn~ 257 (324)
+.|+.++++.+. |.+
T Consensus 166 ~~Gv~~d~VNiMtmDy 181 (294)
T cd06543 166 ANGVDLDTVNIMTMDY 181 (294)
T ss_pred HcCCCcceeeeeeecC
Confidence 678776665554 443
No 86
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=51.32 E-value=2e+02 Score=26.44 Aligned_cols=156 Identities=11% Similarity=0.126 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCC--hHHH--HHHHHhh-hhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHH
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDL--YGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~--lG~al~~-~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (324)
+...+.++.--+.|..+|..++.-|. .+.. +.+.|++ .+.+ .-..++.. +.++..+...|...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~------~i~Hlt~r------~~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP------TVPHLTCI------GATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC------eeEEeeec------CCCHHHHHHHHHHH
Confidence 44555555556788999998886652 2222 2333432 1111 12223322 34677777777744
Q ss_pred HhhcCCCccceEEeecCCC------CCCCHHHHHHHHHHHHHcCCccEEEecCCCH---------HHHHHHH---HcCCC
Q 020566 186 RRRMDVPCLDMLQFHWWDY------SNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ERLRIIL---ENGIP 247 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~------~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~---------~~l~~~~---~~g~~ 247 (324)
..+|++ +++.|-...+ ....+..+.+-++.+++..---.||+..|.. ..++.+. +.|..
T Consensus 83 -~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 778865 3444432111 1111334555555555542235788876432 2333333 35777
Q ss_pred eEEEeecCCccCCCccHHHHHHHHHcCceEEEccccccCcC
Q 020566 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
+.+-|.-|+. ..-.++++.|++.||.+ |+--|++
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 8888988886 23347899999998764 4444443
No 87
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=51.14 E-value=2.1e+02 Score=28.04 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=76.2
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC--CccEEEe--cCCCHHHHHHHHHcCCCe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGv--Sn~~~~~l~~~~~~g~~~ 248 (324)
++++...+-+.+.++. .+++++..|-+.. -|+.+.+|.++- .+.-+|= +.+++..+.++++.+ ..
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~-----D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~-a~ 329 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDED-----DWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKK-AA 329 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCc-----CHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhC-CC
Confidence 4555555555544444 3577788775433 255556666663 4544332 235789999988875 37
Q ss_pred EEEeecCCccCCC-ccHHHHHHHHHcCceEEE-ccccccC----------cCCCCcCCCCCCCCCCCCCCCCccHHHHHH
Q 020566 249 VSNQVQHSVVDMR-PQQKMAELCQLTGVKLIT-YGTVMGG----------LLSEKFLDTNLSIPFAGPPLNTPSLQKYKR 316 (324)
Q Consensus 249 ~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via-~spLa~G----------~Ltg~~~~~~~~~~~~~~~~~~~~~~k~~~ 316 (324)
+++|+..+-+-.- .-.++...|+.+|+.++. +.....+ +=++.. ..+.+-+.+...||-+
T Consensus 330 d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~i--------k~G~~~r~er~~k~n~ 401 (408)
T cd03313 330 NALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQI--------KTGAPCRSERTAKYNQ 401 (408)
T ss_pred CEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCcc--------ccCCCcchHHHHHHHH
Confidence 7777776643211 123788999999999864 3322111 111111 2356667888999988
Q ss_pred hhc
Q 020566 317 VQR 319 (324)
Q Consensus 317 l~~ 319 (324)
|++
T Consensus 402 ll~ 404 (408)
T cd03313 402 LLR 404 (408)
T ss_pred HHH
Confidence 875
No 88
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.86 E-value=1.5e+02 Score=28.29 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=22.5
Q ss_pred CHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEE
Q 020566 234 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 234 ~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
+.+.++.+.+.|+.. +.+-.+.-+-..-.+.+++++++|..+..
T Consensus 89 ~~~dl~~a~~~gvd~--iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 89 TVHDLKAAYDAGART--VRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred CHHHHHHHHHCCCCE--EEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 456666666665432 33322221111223677777777766553
No 89
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.33 E-value=1.3e+02 Score=27.29 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCC-----------------C
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP-----------------P 169 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~-----------------~ 169 (324)
..+.++-.++.+++-+.||.||=|... ++-+ ++|.+.+-+ -++|.+--.. +
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd----~~s~-d~l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlS 119 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFD----EESV-DFLEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILS 119 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-S----HHHH-HHHHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCC----HHHH-HHHHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEE
Confidence 456788999999999999999977652 2221 223332222 3333331100 0
Q ss_pred CCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHH-HHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 020566 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYL-DALNHLTDLKEEGKIKTVALTNFDTERLRI 240 (324)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~-e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~ 240 (324)
.+..+.+.|.++++.-.++- .-|+.++|.........+ --+..|..|++.=- --||+|.|+......
T Consensus 120 TG~stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~ 187 (241)
T PF03102_consen 120 TGMSTLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAP 187 (241)
T ss_dssp -TT--HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHH
T ss_pred CCCCCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHH
Confidence 01335677777777653443 358999998643222122 24555566664333 568999998754333
No 90
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=49.84 E-value=1.4e+02 Score=28.54 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCCCHHHHHHhHHHHHhhcCCCccceEEeecC-------CCCCCCHHHHHHHHHHHHHc-CCccEEEecC---CCHHHHH
Q 020566 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKEE-GKIKTVALTN---FDTERLR 239 (324)
Q Consensus 171 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p-------~~~~~~~~e~~~aL~~l~~~-G~Ir~iGvSn---~~~~~l~ 239 (324)
+.++.+.+.+-++ .|.+.|+++|.+-..-.. .+.... .++.++.+.+. ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 3566666665554 488999999998632110 111111 34444444332 3355444332 2567787
Q ss_pred HHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEc
Q 020566 240 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (324)
Q Consensus 240 ~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~ 280 (324)
.+.+.|+...-+-...+- ...-.+.+++++++|..+...
T Consensus 96 ~a~~~gvd~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTE--ADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHcCCCEEEEEEecch--HHHHHHHHHHHHHCCCeEEEE
Confidence 777776543222222222 122347888889999877654
No 91
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=49.80 E-value=2.3e+02 Score=26.71 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCC---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHH
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (324)
..+.++...+++.+.+.|+..|.-.- |. ... +-+.++..... . . ...+.++|-. ..+. ..-
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~d-l~~li~~i~~~-~-~-l~~i~itTNG---------~ll~-~~~ 107 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRG-CDQLVARLGKL-P-G-LEELSLTTNG---------SRLA-RFA 107 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCcccc-HHHHHHHHHhC-C-C-CceEEEEeCh---------hHHH-HHH
Confidence 45778899999999999998775442 32 111 12333322111 0 1 1145555531 1122 234
Q ss_pred HHHhhcCCCccceEEeecCCCC-------CCCHHHHHHHHHHHHHcCC--c--cEEEecCCCHHHHHHHHH
Q 020566 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK--I--KTVALTNFDTERLRIILE 243 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~G~--I--r~iGvSn~~~~~l~~~~~ 243 (324)
+.|...|++.+-+ -|+..+++ ...++.+++.++.+++.|. | ..+.+...+.+++.++++
T Consensus 108 ~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 108 AELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred HHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 5566777776653 44554332 1237789999999999885 2 334445567777776654
No 92
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=49.00 E-value=2.4e+02 Score=26.72 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCC---------hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGP---------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~---------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~ 179 (324)
+.++..+.++.+++.|++.|=.--..|. ..+.+ +++++.-.+ ++.+.--. +. .++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~-------~~~l~vDa-n~--~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGY-------DVDLMLDC-YM--SWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCC-------CCcEEEEC-CC--CCCHHHHH
Confidence 4566677788889999998754221111 11111 222221111 12222211 11 35655433
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCcc
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l 258 (324)
+-+ +.|+. .|++++..|-+. +-++.+.+++++..|. +.|=|.++...+.++++.+ ..+++|+..+-.
T Consensus 189 ~~~-~~l~~-----~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~ 256 (341)
T cd03327 189 KMA-RALEK-----YELRWIEEPLIP-----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWV 256 (341)
T ss_pred HHH-HHhhh-----cCCccccCCCCc-----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCcccc
Confidence 322 23333 456666665432 2456678888887776 6677888999999998875 488888886643
Q ss_pred CC-CccHHHHHHHHHcCceEEEcc
Q 020566 259 DM-RPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 259 ~~-~~~~~ll~~~~~~gI~via~s 281 (324)
-. ..-.++.+.|+++|+.++.++
T Consensus 257 GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 257 GGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CCHHHHHHHHHHHHHcCCeecccc
Confidence 21 123489999999999998774
No 93
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.58 E-value=1e+02 Score=30.15 Aligned_cols=148 Identities=10% Similarity=0.042 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHH-cCCCeeecCCCCCC-hH--HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHH
Q 020566 109 DRDDAVDAMLRYAD-AGLTTFDMADHYGP-AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (324)
Q Consensus 109 ~~~~~~~~l~~Al~-~Gin~fDTA~~YG~-sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (324)
+.++..+.++.+++ .|++.|=.-..-.. .+ +.+ +++++.- + ++.+.-.. + ..++++...+-+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v-~avRea~-~-------~~~l~vDa-N--~~w~~~~A~~~~-- 233 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAV-KALAEAF-P-------GARLRLDP-N--GAWSLETAIRLA-- 233 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH-HHHHHhC-C-------CCcEEEeC-C--CCcCHHHHHHHH--
Confidence 45666666777775 69998754321111 11 112 2232211 1 12222221 1 145665544333
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-Cc
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RP 262 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~ 262 (324)
++|. - |+.++..|-+ -++.+.++++...+. +.|=|-++..++.++++.+ ..+++|......-. ..
T Consensus 234 --~~l~--~-~l~~iEeP~~-------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~ 300 (395)
T cd03323 234 --KELE--G-VLAYLEDPCG-------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRG 300 (395)
T ss_pred --HhcC--c-CCCEEECCCC-------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHH
Confidence 3443 2 6667776643 356678888887666 6677778888999998876 38888888664321 12
Q ss_pred cHHHHHHHHHcCceEEEcccc
Q 020566 263 QQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 263 ~~~ll~~~~~~gI~via~spL 283 (324)
-.++.+.|+++||.++.++..
T Consensus 301 ~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 301 SVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHHcCCeEEEecCc
Confidence 348999999999999988754
No 94
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=48.54 E-value=2.5e+02 Score=27.15 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=54.8
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHc
Q 020566 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLT 273 (324)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~ 273 (324)
|-+.+-.|. +......+..+...+.++..-+...+.+.++++++...+..++..+.||.-. ..-+++.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 555554443 3445555555555565555555556778888777544455566666666422 2234899999999
Q ss_pred CceEEEccccccCc
Q 020566 274 GVKLITYGTVMGGL 287 (324)
Q Consensus 274 gI~via~spLa~G~ 287 (324)
|+.++.=...+.|.
T Consensus 166 g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 166 GAVVVVDNTFLSPA 179 (382)
T ss_pred CCEEEEECCCcccc
Confidence 99998766665554
No 95
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=48.38 E-value=2.2e+02 Score=26.05 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEE-eecCCCCCCCHHH----HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLD----ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~e----~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (324)
++.+.+.+..++.+ +-|.|+||+=. --+|+......++ ....++.+++.-.+. |-+-+++++.++++++.|.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 45566666655554 56899999953 2234433222233 334456666653333 7888999999999999874
Q ss_pred eEEEeecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
.-+|-+. .... +.++++.++++|..++.+-
T Consensus 98 ~iINdis--g~~~--~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 DIINDVS--GGSD--DPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred CEEEeCC--CCCC--ChHHHHHHHHcCCCEEEEC
Confidence 3344333 2211 2589999999999999944
No 96
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=48.19 E-value=2.5e+02 Score=26.59 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCeEEEeec
Q 020566 213 LNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQ 254 (324)
Q Consensus 213 ~~aL~~l~~~G~Ir~iGvSn~-~~~~l~~~~~~g~~~~~~Q~~ 254 (324)
++.++++++.=.|--++.-+. +++.++++++.+ ..+.+++-
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g-~aD~V~~g 320 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESG-RADLVALG 320 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC-CCCeehhh
Confidence 355566777666777777664 778888888765 25555543
No 97
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=47.56 E-value=1.4e+02 Score=23.91 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=43.9
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
.+..+.|+-|.... ...+..+++.+.+..+... .+..|++++..+.....+..+..+.|.+|.+.
T Consensus 44 ~R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34566677775433 4577888888888876543 23579999999876666677777776666543
No 98
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=47.33 E-value=2.5e+02 Score=26.47 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHHcCceEEEccccccC
Q 020566 265 KMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 265 ~ll~~~~~~gI~via~spLa~G 286 (324)
+-++.+++.||.+...++|-.|
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCC
Confidence 3445555566666666655544
No 99
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=47.12 E-value=5.7 Score=28.01 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.1
Q ss_pred cccccCcch
Q 020566 5 HCHFTGRNF 13 (324)
Q Consensus 5 ~~~~~~~~~ 13 (324)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 499999988
No 100
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.00 E-value=2.4e+02 Score=26.12 Aligned_cols=153 Identities=13% Similarity=0.174 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcC-CCeeec-------C---CCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHH
Q 020566 109 DRDDAVDAMLRYADAG-LTTFDM-------A---DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~G-in~fDT-------A---~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (324)
+.++..+..+.+-+.| +..||- + ..|+...+.+-+.++..... + ++-|.-|..++ .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV----V--KVPVIVKLTPN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh----c--CCCEEEEcCCC-----chh
Confidence 4577778888888888 898875 2 22344455666666665332 1 23455565442 122
Q ss_pred HHHhHHHHHhhcCCCccceEE-eecC--CCCC--------------CC-HHHHHHHHHHHHHcCCccEEEecCC-CHHHH
Q 020566 178 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYSN--------------PG-YLDALNHLTDLKEEGKIKTVALTNF-DTERL 238 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~-lH~p--~~~~--------------~~-~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l 238 (324)
+. .+-+.|+..|.|.|++.- .+.. +... +. ..-.++.+.++++.=.+--||+... +.+.+
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 334457788988887631 1111 0000 00 1124666677777656888998875 78889
Q ss_pred HHHHHcCCCeEEEeecCCccC-C----CccHHHHHHHHHcCc
Q 020566 239 RIILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (324)
Q Consensus 239 ~~~~~~g~~~~~~Q~~yn~l~-~----~~~~~ll~~~~~~gI 275 (324)
.+++..| .+.+|+-=-++. + ...+++-.++.++|.
T Consensus 250 ~~~l~aG--Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG--ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC--CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9988876 466665433221 1 113367777777774
No 101
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=46.61 E-value=2.3e+02 Score=25.86 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEE-eecCCCCCCCHH----HHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHcCC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYL----DALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 246 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~----e~~~aL~~l~~~-G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (324)
.+++.+.+..++.+ .-|.++||+=. --+|+......+ .....++.+++. +. -+.+-+++++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677776666554 56899999931 123433211122 245555666655 43 37888999999999999874
Q ss_pred CeEEEeecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 247 ~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
+ -+|-+..- . ..++++.++++|..++.+-
T Consensus 97 ~-iINsis~~--~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 D-IINDVSGG--Q---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred C-EEEECCCC--C---CchhHHHHHHcCCcEEEEe
Confidence 3 34444322 1 4479999999999999954
No 102
>PLN02363 phosphoribosylanthranilate isomerase
Probab=46.53 E-value=70 Score=29.39 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=46.0
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEe
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q 252 (324)
+.+.++.+. ++|.|++-+.+... .+..... +..+.+.+......++.+||. |-+++.+.++.+. ..++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSISL-SVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcCCH-HHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 445555444 58999999974332 2222212 333334443333347789985 8888888888765 3689999
Q ss_pred ecCC
Q 020566 253 VQHS 256 (324)
Q Consensus 253 ~~yn 256 (324)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 103
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=46.31 E-value=2.2e+02 Score=28.27 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=66.9
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHHcCCCe
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 248 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~---~~~l~~~~~~g~~~ 248 (324)
.++++.+.+.+++..+.++ .++.+-|-.|.......+.+++.+..++++..=..+.+|+.. ++.++++.+.++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gv-- 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGV-- 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCC--
Confidence 4688888888888776652 345566656543333235578888888888211256777644 677888877653
Q ss_pred EEEeecCCccCCC-------------------cc--------HHHHHHHHHcCceEEEccccccC
Q 020566 249 VSNQVQHSVVDMR-------------------PQ--------QKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 249 ~~~Q~~yn~l~~~-------------------~~--------~~ll~~~~~~gI~via~spLa~G 286 (324)
+.+.+.++-++.. .. .+-++.+.+.|+.+....++--|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 3333333332210 00 13356678889988877776655
No 104
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=46.28 E-value=1.4e+02 Score=31.13 Aligned_cols=88 Identities=9% Similarity=-0.012 Sum_probs=51.8
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCCccCCCccHH
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 265 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ 265 (324)
..+|.|++=+.+... .+.....+.....+.+......++.|||- |-+++.+.++.+. ..++++|++-+.- ....+
T Consensus 20 ~~~gaD~iGfIf~~~-SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQLHG~e~--~~~~~ 95 (610)
T PRK13803 20 VDMLPDFIGFIFYEK-SPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQLHGAES--KAEPA 95 (610)
T ss_pred HHcCCCEEEEEecCC-CCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCCCC--cccHH
Confidence 458999999985443 22222233313333333333457889995 8888898888765 3689999986531 11134
Q ss_pred HHHHHHHcCceEE
Q 020566 266 MAELCQLTGVKLI 278 (324)
Q Consensus 266 ll~~~~~~gI~vi 278 (324)
.++..++.++.++
T Consensus 96 ~~~~l~~~~~~ii 108 (610)
T PRK13803 96 YCQRIYKKSIKKI 108 (610)
T ss_pred HHHHhhhcCCcEE
Confidence 4444544455544
No 105
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=46.01 E-value=1.3e+02 Score=24.03 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=47.0
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCC---CccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~---dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
.+..+.|+-|.... ...+..+++.+.+..+.+.. ...|++++-.+.....++.+..+.|..+.+.
T Consensus 47 ~R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34566677675433 45778888888888876642 3589999999877766688888888777665
No 106
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.43 E-value=37 Score=30.86 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCccccCceeeccccCCCCCC---CCCHHHHHHHHHHHH----HcCCCeeecCC--CC-C-ChHHHHHHHHhh
Q 020566 86 NDSLEICRVLNGMWQTSGGWG---RIDRDDAVDAMLRYA----DAGLTTFDMAD--HY-G-PAEDLYGIFINR 147 (324)
Q Consensus 86 ~tg~~vs~lglGt~~~g~~~~---~~~~~~~~~~l~~Al----~~Gin~fDTA~--~Y-G-~sE~~lG~al~~ 147 (324)
.+|+.+|.++|.+.+-.. +| +...+++.+++..|+ +.|||.|--|. +| - ..|+...+++++
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHH
Confidence 678999999999876432 22 233456666666655 78999998873 33 1 133344666654
No 107
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=45.12 E-value=1.5e+02 Score=25.74 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=60.6
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeEEEe
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQ 252 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~--~~l~~~~~~g~~~~~~Q 252 (324)
+.....+...++..+...-.++ +--++... .......+.+..+++.|- .+++.++.. ..+..+.+ .+|+++=
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~-iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iK 172 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLV-LEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLK 172 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEE-EEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEE
Confidence 4566778888888887653333 32222221 224457888999999998 466666543 23333332 3566666
Q ss_pred ecCCccCCCc--------cHHHHHHHHHcCceEEEcc
Q 020566 253 VQHSVVDMRP--------QQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 253 ~~yn~l~~~~--------~~~ll~~~~~~gI~via~s 281 (324)
+..+.+.... -+.++..|+..|+.+++-.
T Consensus 173 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 173 IDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 6654442211 1368888999999988754
No 108
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.95 E-value=2e+02 Score=25.47 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=56.3
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cCCCe
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 248 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~----~g~~~ 248 (324)
++.+... .+-+.|.++|+++|++- .|.... ...+.++.+.+.... .+-.+++......++...+ .+...
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASE-DDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSH-HHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCH-HHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 3444444 44556999999999998 332211 133445555555555 4555666667776666444 56554
Q ss_pred EEEeecCCccC------CC------ccHHHHHHHHHcCceE
Q 020566 249 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 277 (324)
Q Consensus 249 ~~~Q~~yn~l~------~~------~~~~ll~~~~~~gI~v 277 (324)
..+-...|... .. .-.+.+++++++|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44444455411 00 1237889999999998
No 109
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=44.72 E-value=27 Score=27.12 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=35.7
Q ss_pred cCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccc
Q 020566 231 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 231 Sn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~sp 282 (324)
|.++...++++++.+ .++++|+...-.-. ..-..+.++|+++|+.++..+.
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 457788888888865 37788877543211 1233799999999999999886
No 110
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.15 E-value=93 Score=29.58 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCh--HHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhh
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGPA--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (324)
++..+.+..+.+.|++.|=.=- +.. .+.+ +++++.- . ++.+.--. + ..++.+... + +++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~-g-------~~~l~lDa-N--~~~~~~~a~--~---~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERF-P-------DIPLMADA-N--SAYTLADIP--L---LKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHC-C-------CCeEEEEC-C--CCCCHHHHH--H---HHH
Confidence 6677788888899999873311 221 2222 2332211 0 12222221 1 145665542 2 333
Q ss_pred cCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHH
Q 020566 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKM 266 (324)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~l 266 (324)
| +..++.++..|-+ .+-++.+.+++++-.+. +.|=|-++.+.+..+++.+ ..+++|+....+-. ..-.++
T Consensus 200 l--~~~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i 271 (354)
T cd03317 200 L--DEYGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKI 271 (354)
T ss_pred h--hcCCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHH
Confidence 3 2246666666642 23466677777665433 6677889999999998875 37888887654321 123489
Q ss_pred HHHHHHcCceEEEccccccC
Q 020566 267 AELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 267 l~~~~~~gI~via~spLa~G 286 (324)
...|+.+||.++..+....|
T Consensus 272 ~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 272 HDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHcCCcEEecCcccch
Confidence 99999999999876554333
No 111
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=44.01 E-value=2.1e+02 Score=24.58 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhh
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (324)
+.++..++++.+++.|++.|.....-.+..+.+...-+..+ ++ .+...+ -.+.+.+..++ .
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-----~~--~iGag~-------v~~~~~~~~a~-----~ 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-----EA--LIGAGT-------VLTPEQADAAI-----A 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-----CC--EEEEEe-------CCCHHHHHHHH-----H
Confidence 57889999999999999999876654444444443322221 11 111222 12445555444 3
Q ss_pred cCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEee
Q 020566 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (324)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (324)
+|.|++ |.|..+ .+.. +..++.|.---+|++ +++++.++.+.| .+++++
T Consensus 75 ~Ga~~i-----~~p~~~----~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~G--ad~i~~ 123 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEVV---KAANRAGIPLLPGVA--TPTEIMQALELG--ADIVKL 123 (190)
T ss_pred cCCCEE-----EcCCCC----HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHCC--CCEEEE
Confidence 777655 666422 2333 334445665568998 577788887766 455554
No 112
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.74 E-value=2e+02 Score=27.86 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=65.7
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcCCC
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIP 247 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~------G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (324)
+++...+-+. .|+...-++ ++++..|-+... .++-++.+.++.++ +.=-..|=|.++.+.+.++++.+ -
T Consensus 210 ~~~~A~~~~~-~Le~~~~~~--~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a 284 (369)
T cd03314 210 DPDRAADYLA-TLEEAAAPF--PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-A 284 (369)
T ss_pred CHHHHHHHHH-HHHHhcCCC--cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-C
Confidence 5555444333 334331123 456777754321 22356777777776 33346677888999999998875 3
Q ss_pred eEEEeecCCccCC-CccHHHHHHHHHcCceEEEccc
Q 020566 248 VVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 248 ~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~sp 282 (324)
.+++|+..+-.-. ..-.++.+.|+.+||.++..+.
T Consensus 285 ~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 285 AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred CCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 7888888775321 1234899999999999998654
No 113
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.48 E-value=3e+02 Score=26.21 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=58.6
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~ 271 (324)
.++.++..|-+. +-++.+.+|+++.-+. +.|=|.++...+..+++.+ -++++|+....+-. ..-.++.+.|+
T Consensus 202 ~~i~~iEeP~~~-----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~ 275 (352)
T cd03325 202 YRLLFIEEPVLP-----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAE 275 (352)
T ss_pred cCCcEEECCCCc-----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 456666666432 2467778888876665 5667788999999988765 37888888654321 12348999999
Q ss_pred HcCceEEEcc
Q 020566 272 LTGVKLITYG 281 (324)
Q Consensus 272 ~~gI~via~s 281 (324)
++||.++..+
T Consensus 276 ~~gi~~~~h~ 285 (352)
T cd03325 276 AYDVALAPHC 285 (352)
T ss_pred HcCCcEeccC
Confidence 9999999776
No 114
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=43.29 E-value=1.6e+02 Score=23.17 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=45.9
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCC---CccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~---dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
.+..+.|+-|++. ...+..+++.+.+.+..+.. ...|++++-.+.....++.+..+.|..+.+.
T Consensus 38 ~R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4556667777654 46788888888888876642 3579999998877666677777777777654
No 115
>PRK06361 hypothetical protein; Provisional
Probab=42.22 E-value=2.3e+02 Score=24.59 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCeeecCCCCCC--hHHHH---HHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 112 DAVDAMLRYADAGLTTFDMADHYGP--AEDLY---GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~l---G~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
...++++.|.+.|+..|=-+++... ....+ -+.+++.... ...++..+.-... ..++.+ ..+.+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~----~~i~v~~GiE~~~----~~~~~~-~~~~~~~ 81 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELY----WDIEVIPGVELTH----VPPKLI-PKLAKKA 81 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhc----CCCEEEEEEEEcc----cCchhh-chHHHHH
Confidence 4677999999999998866666432 11111 1112211111 1123443333221 112222 3333555
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEeecCCccCCCccHH
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 265 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ 265 (324)
.+++ .|+..+|......+ .. ... -.++.+.|.+.-+|==. .....++.+.+.+..+.++- +.........
T Consensus 82 ~~~~---~~~~svH~~~~~~~-~~-~~~-~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~---~~~~~~~~~~ 152 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEP-VE-EGT-NLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA---RKGHSLTNGH 152 (212)
T ss_pred HHCC---CEEEEECCCCcchh-hh-hhh-HHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC---CCCcccchHH
Confidence 5665 45668995432222 11 111 14577888877666322 23445555656666565543 1112344558
Q ss_pred HHHHHHHcCceEEEcccc
Q 020566 266 MAELCQLTGVKLITYGTV 283 (324)
Q Consensus 266 ll~~~~~~gI~via~spL 283 (324)
+++.+++.|+.++.-|.-
T Consensus 153 ~l~~a~~~gi~vv~~SDa 170 (212)
T PRK06361 153 VARIAREAGAPLVINTDT 170 (212)
T ss_pred HHHHHHHhCCcEEEECCC
Confidence 999999999998766543
No 116
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=42.10 E-value=1.6e+02 Score=24.07 Aligned_cols=63 Identities=14% Similarity=0.009 Sum_probs=45.7
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCC----CccceEEeecCCCCCCCHHHHHHHHHHHHH
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~----dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~ 221 (324)
.+..+.|+-|++. ...+..|++-+.+++..+.. ...|++++-.+.....++.+..+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3456667777654 56788888888888877643 568999999987666667777777766654
No 117
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.93 E-value=1.7e+02 Score=26.34 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeecCCCC--C---ChHHHHHHHHhh
Q 020566 105 WGRIDRDDAVDAMLRYADAGLTTFDMADHY--G---PAEDLYGIFINR 147 (324)
Q Consensus 105 ~~~~~~~~~~~~l~~Al~~Gin~fDTA~~Y--G---~sE~~lG~al~~ 147 (324)
.|+.+.+++.++++.|.++|++-+=..++| | ++++.+-+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 356678999999999999999976544444 2 345555555544
No 118
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.01 E-value=4.3e+02 Score=27.33 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCC--hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhh
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (324)
+...+.++.-.+.|-.|||....=|- .+..+.-+.. ..+.. .+..-..++.. +.++..+...|+.. ..
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~-lq~~~--Gie~i~HLTCr------d~n~~~L~~~L~~a-~~ 84 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANR-MQNMI--CVETMMHLTCT------NMPVEKIDHALETI-KS 84 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHH-HHHhc--CCCeeEEeeec------CCCHHHHHHHHHHH-HH
Confidence 44455556666789999998776652 3433332211 11110 11112223322 44667777777665 78
Q ss_pred cCCCccceEEeecCCCCC--------CCHHHHHHHHHHHHHc-CCccEEEecCCCH------------------HHHHHH
Q 020566 189 MDVPCLDMLQFHWWDYSN--------PGYLDALNHLTDLKEE-GKIKTVALTNFDT------------------ERLRII 241 (324)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~--------~~~~e~~~aL~~l~~~-G~Ir~iGvSn~~~------------------~~l~~~ 241 (324)
+|+. .++.|-...+.. ..+..+.+-++.+++. |....|||+.|.. ..+..+
T Consensus 85 ~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~L 162 (565)
T PLN02540 85 NGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYL 162 (565)
T ss_pred CCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHH
Confidence 8876 455554322111 1133355555555554 5567899986532 233333
Q ss_pred H---HcCCCeEEEeecCCccCCCccHHHHHHHHHcCce
Q 020566 242 L---ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (324)
Q Consensus 242 ~---~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~ 276 (324)
. +.|..+.+-|+-|+. ..-.+.++.|++.||.
T Consensus 163 k~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 163 KEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCC
Confidence 3 357788888988885 2223788999999843
No 119
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.99 E-value=3e+02 Score=27.33 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHc--CCCeEEEeecCCccCCCccHHHHHHHHHcCc
Q 020566 209 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 275 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~--g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI 275 (324)
.++..++++.+++.|.--. +|+-+-+.+.+++.++. ...++.++ ++++...+..++.+.++++|+
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHCCC
Confidence 5677888888888886432 35666777777665542 22344333 455556677788888888775
No 120
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=40.75 E-value=3e+02 Score=26.44 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred EEeecCCCC----------CCCHHHHHHHHHHHHH-cCC---ccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 020566 197 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (324)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~-~G~---Ir~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~yn~l 258 (324)
+-||.++++ ...++++++++.++.+ .|+ |+++=+. |-+.+++.++.+ .+.++.++-++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668987642 1126788888887654 342 3344443 445577777655 355678888999986
Q ss_pred CC----CccH----HHHHHHHHcCceEEEccccc------cCcCCCCc
Q 020566 259 DM----RPQQ----KMAELCQLTGVKLITYGTVM------GGLLSEKF 292 (324)
Q Consensus 259 ~~----~~~~----~ll~~~~~~gI~via~spLa------~G~Ltg~~ 292 (324)
.. .+.. .+.++.+++|+.++.....+ .|.|..++
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~~ 346 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAKD 346 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhhh
Confidence 42 1221 45667788999999988775 35665443
No 121
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=40.59 E-value=2.5e+02 Score=27.09 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred EEeecCCCC----------CCCHHHHHHHHHHHHHcCCccEEEe-------cCCCHHHHHHHHH--cCCCeEEEeecCCc
Q 020566 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILE--NGIPVVSNQVQHSV 257 (324)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G~Ir~iGv-------Sn~~~~~l~~~~~--~g~~~~~~Q~~yn~ 257 (324)
+.||.|+.+ ...+++.+++.+...+... +.|-+ -|-+.++.+++.+ .+.+..+|-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 568988642 1226778888777776555 44443 2666777777776 46777999999999
Q ss_pred cCCCc--------cHHHHHHHHHcCceEEEcccccc
Q 020566 258 VDMRP--------QQKMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 258 l~~~~--------~~~ll~~~~~~gI~via~spLa~ 285 (324)
..... -....+...++||.+....+-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 85322 12566777788999998877643
No 122
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.19 E-value=2.8e+02 Score=25.02 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=47.9
Q ss_pred HHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEee---cCCcc
Q 020566 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQV---QHSVV 258 (324)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q~---~yn~l 258 (324)
-+-|+++|. |.+.+|..+.+-..-.--|+.+.++++.-.+.-|..-. .+++.+.++.+.+ ..+.+.+ -|+-
T Consensus 161 ~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g-~~dgv~~g~a~~~~- 235 (254)
T TIGR00735 161 AKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG-KADAALAASVFHYR- 235 (254)
T ss_pred HHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CcceeeEhHHHhCC-
Confidence 334456665 55555654332110001245556666665666665543 4678888888764 1222222 1221
Q ss_pred CCCccHHHHHHHHHcCceE
Q 020566 259 DMRPQQKMAELCQLTGVKL 277 (324)
Q Consensus 259 ~~~~~~~ll~~~~~~gI~v 277 (324)
...-.+++++|+++||.+
T Consensus 236 -~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 -EITIGEVKEYLAERGIPV 253 (254)
T ss_pred -CCCHHHHHHHHHHCCCcc
Confidence 122348899999999864
No 123
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.14 E-value=3.4e+02 Score=26.00 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHhHHHHHhhcC-CCccceEEeecCCCC----------CCCHHHHHHHHHH-HHHcCC---ccEEEec--CCCHHHHHH
Q 020566 178 VRESIDVSRRRMD-VPCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRI 240 (324)
Q Consensus 178 i~~~le~SL~rLg-~dyiDl~~lH~p~~~----------~~~~~e~~~aL~~-l~~~G~---Ir~iGvS--n~~~~~l~~ 240 (324)
+++-.+.-+++|+ .+....+-||.++++ ...+++.++++.+ +.+.|+ ++++=+. |.+.+.+++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4333333344443 344577889987643 1126777877766 445553 5555554 566677777
Q ss_pred HHH--cCCCeEEEeecCCccCC----CccH----HHHHHHHHcCceEEEcccccc
Q 020566 241 ILE--NGIPVVSNQVQHSVVDM----RPQQ----KMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 241 ~~~--~g~~~~~~Q~~yn~l~~----~~~~----~ll~~~~~~gI~via~spLa~ 285 (324)
+.+ .+.+..++-++||++.. .+.+ .+.+..+++||.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 665 35567888899998742 1222 456677888999998877653
No 124
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=40.02 E-value=3.1e+02 Score=25.42 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCC--hHHHH--HHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDLY--GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~l--G~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
+...+.++.-.+.+..|+..+..=|. .+..+ ..-|++ +. .+..-..++.. +.++..++..|...
T Consensus 16 ~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~---~~--g~~~i~Hltcr------~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 16 QNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN---VV--GVETCMHLTCT------NMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH---hc--CCCeeEEeccC------CCCHHHHHHHHHHH-
Confidence 44556666666788889988765532 23322 222321 10 11112223322 34556666665554
Q ss_pred hhcCCCccceEEeecCCC--------CCCCHHHHHHHHHHHHHc-CCccEEEecCCC--------HH-HHHHHH---HcC
Q 020566 187 RRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD--------TE-RLRIIL---ENG 245 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~--------~~~~~~e~~~aL~~l~~~-G~Ir~iGvSn~~--------~~-~l~~~~---~~g 245 (324)
..+|++ +++.|-...+ ....+..+.+-++.+++. |..-.||+..|. .+ .+..+. +.|
T Consensus 84 ~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777865 3444433211 111133355556666654 554689998773 11 233333 357
Q ss_pred CCeEEEeecCCccCCCccHHHHHHHHHcCceE
Q 020566 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 277 (324)
Q Consensus 246 ~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~v 277 (324)
..+.+-|+-|+. ..-.++++.|++.||.+
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 788888988885 22348899999997654
No 125
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.93 E-value=3.5e+02 Score=26.12 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=57.7
Q ss_pred EeecCCCC----------CCCHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCccC
Q 020566 198 QFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVD 259 (324)
Q Consensus 198 ~lH~p~~~----------~~~~~e~~~aL~~l~-~~G~---Ir~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~yn~l~ 259 (324)
-||.++++ ...++++++++.++. +.|+ |+++=+. |-+.+.++++.+ .+.+..++-++||+..
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 38987653 112577888887665 4454 5555554 556777777665 3556788999999864
Q ss_pred C----CccH----HHHHHHHHcCceEEEcccccc
Q 020566 260 M----RPQQ----KMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 260 ~----~~~~----~ll~~~~~~gI~via~spLa~ 285 (324)
. .+.. .+.+..+++||.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 2 1222 455667788999999887753
No 126
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.66 E-value=3.9e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEee
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH 200 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH 200 (324)
..+.+.+++.++..+ +|+.++|++|.+.
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~ 253 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALN 253 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccc
Confidence 457888888877765 4899999999775
No 127
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=39.57 E-value=2.5e+02 Score=24.31 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHhhcCCCccceEEeecCC-CCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCCccCCCc
Q 020566 185 SRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRP 262 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~-~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~ 262 (324)
.+..+|.||+=+.+ +|. +... ..+...++.+.-..+.+||. |-+.+.+.++.+. ..++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~v----~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-~~ld~vQLHG~e----- 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRYV----SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-LGLDVVQLHGDE----- 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-CTESEEEE-SGG-----
T ss_pred HHHHcCCCEEeeec--CCCCCCcc----CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-cCCCEEEECCCC-----
Confidence 45678999988863 343 2222 23444666666555589985 5677778877765 469999988663
Q ss_pred cHHHHHHHHHcCceEE
Q 020566 263 QQKMAELCQLTGVKLI 278 (324)
Q Consensus 263 ~~~ll~~~~~~gI~vi 278 (324)
..+..+..+ .++.++
T Consensus 82 ~~e~~~~l~-~~~~vi 96 (197)
T PF00697_consen 82 SPEYIKLLR-AGLPVI 96 (197)
T ss_dssp -HHHHHHHH-TTSEEE
T ss_pred CHHHHHHhh-cCceEE
Confidence 234444444 345544
No 128
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=39.53 E-value=3e+02 Score=25.09 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=62.8
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeEE
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 250 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (324)
.+++.+.+..++.++ -|.|+||+=. .|. .....++.-+.+..+.+.-. .-|-|-+++++.++++++. |. .-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 466777777777765 5999999864 233 12212332223222222212 2377778999999999986 63 444
Q ss_pred EeecCCccCCCccHHHHHHHHHcCceEEEccc
Q 020566 251 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 251 ~Q~~yn~l~~~~~~~ll~~~~~~gI~via~sp 282 (324)
|-+...-.+ ....++++.++++|..++.+..
T Consensus 97 NsIs~~~~~-e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 97 NSINLEDGE-ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EeCCCCCCc-cccHHHHHHHHHhCCCEEEecc
Confidence 544432110 1234788999999999988764
No 129
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.52 E-value=2.5e+02 Score=24.95 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCC---h-H--HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHh
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (324)
.++++...+.+.+.++|..|+=|+..|+. + | +.+.+.++ ++ ..++++.- -.+.+...+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~-----v~IKaaGG------irt~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT-----IGVKASGG------VRTAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC-----CeEEEeCC------CCCHHHHHHH
Confidence 35577789999999999999999988852 1 2 22333332 21 13444321 1277888888
Q ss_pred HHHHHhhcCCCc
Q 020566 182 IDVSRRRMDVPC 193 (324)
Q Consensus 182 le~SL~rLg~dy 193 (324)
++.--.|+|++.
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888889999874
No 130
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.22 E-value=4.1e+02 Score=26.66 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=40.1
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecC----C--CHHHHHHHHHcC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILENG 245 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn----~--~~~~l~~~~~~g 245 (324)
.+++.|.+.++...++.|+..+ .+...+.... ...+.+-++++++.| .-..++++. . +.+.++.+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 4778999999988888887654 3333222222 344556667777776 323344432 1 345555555555
Q ss_pred C
Q 020566 246 I 246 (324)
Q Consensus 246 ~ 246 (324)
.
T Consensus 298 ~ 298 (497)
T TIGR02026 298 L 298 (497)
T ss_pred C
Confidence 3
No 131
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.13 E-value=3.5e+02 Score=25.79 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA 131 (324)
++.++..++++...++|+..|+..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 466889999999999999999984
No 132
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.77 E-value=3.1e+02 Score=25.36 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=14.4
Q ss_pred HHHHHHHHcCceEEEcccc
Q 020566 265 KMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 265 ~ll~~~~~~gI~via~spL 283 (324)
++.+.|+++||..|-.-+-
T Consensus 138 ~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 138 ELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHcCCcEEEEeCC
Confidence 6888888888888765443
No 133
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=38.73 E-value=3.6e+02 Score=25.78 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=63.8
Q ss_pred CCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 020566 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (324)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (324)
.++..+.+.+...+-.+-..+-.+++.|-|=.+.......++..+++++.++|+++|..-. =+++-++...+++.+.|
T Consensus 141 pNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g- 218 (326)
T PRK11840 141 PNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG- 218 (326)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC-
Confidence 3445578888888888888888899988887777665566678999999999999999753 35666788877777765
Q ss_pred CeEEEee
Q 020566 247 PVVSNQV 253 (324)
Q Consensus 247 ~~~~~Q~ 253 (324)
+.+++.
T Consensus 219 -~~avmP 224 (326)
T PRK11840 219 -AVAVMP 224 (326)
T ss_pred -CEEEee
Confidence 344443
No 134
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=38.67 E-value=3e+02 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=23.4
Q ss_pred HHHcCCCeEEEeecC--CccCCCccHHHHHHHHHcCceEE
Q 020566 241 ILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 241 ~~~~g~~~~~~Q~~y--n~l~~~~~~~ll~~~~~~gI~vi 278 (324)
+.+.|..+.+|--.+ ..-+..+..++++.|++.|+.++
T Consensus 194 ~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~it 233 (253)
T TIGR01856 194 VASQGKALEFNTSGLRKPLEEAYPSKELLNLAKELGIPLV 233 (253)
T ss_pred HHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 334566666665422 22223456689999999998754
No 135
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.48 E-value=4.4e+02 Score=26.74 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=56.7
Q ss_pred CHHHHHHhHHHHHhhcCC-CccceEEeecCCCCCCCHHHHHHHHHHHH------------------HcCCccEEEecC--
Q 020566 174 TSSIVRESIDVSRRRMDV-PCLDMLQFHWWDYSNPGYLDALNHLTDLK------------------EEGKIKTVALTN-- 232 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~-dyiDl~~lH~p~~~~~~~~e~~~aL~~l~------------------~~G~Ir~iGvSn-- 232 (324)
.++-|-+.++...++++. .-++++.+|.|..........-.+++.++ ..++|--||.++
T Consensus 96 ~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~ 175 (513)
T CHL00076 96 TSSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLG 175 (513)
T ss_pred chhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCC
Confidence 334455555555544431 23689999998665332222222233332 235688888774
Q ss_pred ----CCHHHHHHHHHc-CCCeEEEee--------------cCCccC-CCccHHHHHHHH-HcCceEEEccccc
Q 020566 233 ----FDTERLRIILEN-GIPVVSNQV--------------QHSVVD-MRPQQKMAELCQ-LTGVKLITYGTVM 284 (324)
Q Consensus 233 ----~~~~~l~~~~~~-g~~~~~~Q~--------------~yn~l~-~~~~~~ll~~~~-~~gI~via~spLa 284 (324)
.+...++.+++. |+.+.++-. ..|+.- +.....+.++.+ +.|++++...|++
T Consensus 176 f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 176 FHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred CCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 244556666653 543332211 122211 122234556664 5699988878875
No 136
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=38.37 E-value=4.3e+02 Score=26.83 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=54.5
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCC---HHHHHHHHHH-HH-----------HcCCccEEEecCC-----
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTD-LK-----------EEGKIKTVALTNF----- 233 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~---~~e~~~aL~~-l~-----------~~G~Ir~iGvSn~----- 233 (324)
..+-|-+.++...++++.+ ++++.++.|+..... .+.+++.+-+ +. +.++|--||.++.
T Consensus 96 ~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~ 174 (519)
T PRK02910 96 TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHR 174 (519)
T ss_pred HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCCh
Confidence 4455556666666666653 678888887654332 2223333222 11 1245777887542
Q ss_pred -CHHHHHHHHHc-CCCeEEEee--------------cCCcc-CCCccHHHHHHHH-HcCceEEEccccc
Q 020566 234 -DTERLRIILEN-GIPVVSNQV--------------QHSVV-DMRPQQKMAELCQ-LTGVKLITYGTVM 284 (324)
Q Consensus 234 -~~~~l~~~~~~-g~~~~~~Q~--------------~yn~l-~~~~~~~ll~~~~-~~gI~via~spLa 284 (324)
+...++.+++. |+.+.++-. .+|+. ++.....+-++.+ +.|++++...|++
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 23455555553 543332211 12221 1111223444443 5688888777764
No 137
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.27 E-value=54 Score=29.45 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEe----cCCCHHHHHHHHHc-CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEcccc
Q 020566 209 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGv----Sn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spL 283 (324)
.++..++|..++ +..|.. |.+....++.+.+. |. ..|.|+....+.+++...-+.|..++.-+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 666667777776 444443 44555666666653 54 3466776666778999999999888888887
Q ss_pred ccCcCCCCcCCCCCCCCCCCCCCCCccHHHHHHh
Q 020566 284 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRV 317 (324)
Q Consensus 284 a~G~Ltg~~~~~~~~~~~~~~~~~~~~~~k~~~l 317 (324)
+.|+-.. --+.+++.+.+++++.+
T Consensus 145 a~gL~~~----------~lGr~i~~~~~e~l~~l 168 (223)
T COG2102 145 AEGLDES----------WLGRRIDREFLEELKSL 168 (223)
T ss_pred ccCCChH----------HhCCccCHHHHHHHHHH
Confidence 7776431 12567777788887777
No 138
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=38.26 E-value=2.7e+02 Score=26.41 Aligned_cols=82 Identities=6% Similarity=0.038 Sum_probs=55.4
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHc
Q 020566 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT 273 (324)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~ 273 (324)
++.++..|-. .++.|.+++++-.|. +.|=|-++...+.++++.+ ..+++|+..+.+- --.++++.|+++
T Consensus 162 ~l~~iEqP~~-------~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~-a~dvi~ik~~~~G--Git~~lkiA~~~ 231 (327)
T PRK02901 162 PLEYVEQPCA-------TVEELAELRRRVGVPIAADESIRRAEDPLRVARAG-AADVAVLKVAPLG--GVRAALDIAEQI 231 (327)
T ss_pred CceEEecCCC-------CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCcchhC--CHHHHHHHHHHc
Confidence 5556655532 145666776664444 4555667788888887764 4888888877642 234788899999
Q ss_pred CceEEEccccccC
Q 020566 274 GVKLITYGTVMGG 286 (324)
Q Consensus 274 gI~via~spLa~G 286 (324)
||.++..|.+.++
T Consensus 232 gi~v~v~s~~es~ 244 (327)
T PRK02901 232 GLPVVVSSALDTS 244 (327)
T ss_pred CCcEEEeCCcccH
Confidence 9999987766544
No 139
>PRK06256 biotin synthase; Validated
Probab=38.25 E-value=2.8e+02 Score=26.02 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCee-ecCCCCCChH---HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAE---DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~f-DTA~~YG~sE---~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (324)
.+.++..+.++.+.+.|++.| -.+..++... +.+-+.++...+. . .+.+.+-.+ ..+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-----~i~~~~~~g----~l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-----DLEICACLG----LLTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-----CCcEEecCC----cCCHHHH-----
Confidence 577899999999999998633 2333333321 1344555544322 1 122222111 2233333
Q ss_pred HHHhhcCCCccceEEeec-------CCCCCCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHH
Q 020566 184 VSRRRMDVPCLDMLQFHW-------WDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILE 243 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~-------p~~~~~~~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~ 243 (324)
+-|++.|++.+-+- +.. ..+ ...+++.+++++.+++.|.--. +|+ +.+.+.+.+.+.
T Consensus 156 ~~LkeaG~~~v~~~-lEts~~~~~~i~~-~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 156 ERLKEAGVDRYNHN-LETSRSYFPNVVT-THTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred HHHHHhCCCEEecC-CccCHHHHhhcCC-CCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 34777787654331 111 111 1236788999999999996322 344 556665555443
No 140
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=38.05 E-value=15 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=15.6
Q ss_pred cccccccCcchhhhhhh-hhhhhHHH
Q 020566 3 AMHCHFTGRNFISKSLS-TFLPLLSI 27 (324)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 27 (324)
.|.|||||+-.+-=++- .++.++.+
T Consensus 31 ~M~Ch~tg~a~~~ig~vi~~~~li~~ 56 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAVIAVLSLIML 56 (124)
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999977544443 33344333
No 141
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.69 E-value=1e+02 Score=30.50 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=47.2
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHH---c----CCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccc
Q 020566 217 TDLKEEGKIKTVALTNFDTERLRIILE---N----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~---~----g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~sp 282 (324)
..+-+.|-...+|..+.+++++++.++ . +-||-+|-+ .++-+...+.++++.+.++||.++..+-
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 456678999999999999999887664 1 336777765 3442333355799999999999887653
No 142
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=37.32 E-value=3.1e+02 Score=25.58 Aligned_cols=100 Identities=9% Similarity=0.051 Sum_probs=61.9
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEe-ecCCCCCCC----HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~l-H~p~~~~~~----~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~ 248 (324)
+.+.+.+..++.+ .-|.|-||+=-- -+|+....+ ++.+...++.++++-.+ -|.|-++.++.++++++.|..+
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4555555554443 457888887522 235433221 22355566777654222 4888899999999999988543
Q ss_pred EEEeecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 249 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 249 ~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
+|-+. . + .+.++++.+++.|..++.+-
T Consensus 114 -INDI~-g-~---~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 -INDIR-S-L---SEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred -EEECC-C-C---CCHHHHHHHHHcCCCEEEEc
Confidence 33331 2 2 14477888999999998874
No 143
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.13 E-value=3.7e+02 Score=25.50 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=62.5
Q ss_pred HHHhhcCCCccceEEeecCCCC----CCCHHHHHHHHHHHHHcCCcc-EEEecCC---CHHHHHHHHHc--CCCeEEEee
Q 020566 184 VSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEEGKIK-TVALTNF---DTERLRIILEN--GIPVVSNQV 253 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~----~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~---~~~~l~~~~~~--g~~~~~~Q~ 253 (324)
+..++.|. |++-||-.+.+ +....|+.+.|+++.+.=+|- .||-|.. +++.++++.+. |-.+-.-..
T Consensus 158 k~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 34456774 77888864322 223788999999998888776 4788875 45677777663 433333333
Q ss_pred cCCccCCCccHHHHHHHHHcCceEEEccccc
Q 020566 254 QHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 254 ~yn~l~~~~~~~ll~~~~~~gI~via~spLa 284 (324)
+.++ .-..+.+++.++|=.|.+|+++.
T Consensus 235 nldl----Dy~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NLDL----DYERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccc----CHHHHHHHHHhcCceEEEeeccC
Confidence 3332 12378999999999999999875
No 144
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.05 E-value=90 Score=28.58 Aligned_cols=68 Identities=4% Similarity=-0.067 Sum_probs=49.1
Q ss_pred HHHHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccc
Q 020566 216 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 216 L~~l~~~G~Ir~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa 284 (324)
|.+-.++|+. .+| ++.-++...+.+...|..+.++=.|+.+++...-..++..|+..|+..+..-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4445555774 444 3444555555565678899999999999876666689999999999999887653
No 145
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.17 E-value=3.4e+02 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCC
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMAD 132 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~ 132 (324)
+.++..++++.-.+.|+..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 458889999999999999999853
No 146
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=36.16 E-value=3.5e+02 Score=26.11 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=56.0
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~ 259 (324)
.++...+..| ++.=|-+++..|. +...+..+..+.+.-.++..-+...+.+.+++++....+..++..+.|+.-
T Consensus 87 ~Ai~~~l~al-l~~Gd~Vl~~~~~-----y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg 160 (388)
T PRK07811 87 AATDCLLRAV-LRPGDHIVIPNDA-----YGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLL 160 (388)
T ss_pred HHHHHHHHHH-hCCCCEEEEcCCC-----chHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcc
Confidence 3344444333 2333555554442 333444444332221233333333567777777654455666666777642
Q ss_pred C-CccHHHHHHHHHcCceEEEccccccCcC
Q 020566 260 M-RPQQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 260 ~-~~~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
. ..-+++.+.|+++|+.++.=...+.|.+
T Consensus 161 ~~~dl~~I~~la~~~gi~lIvD~a~a~~~~ 190 (388)
T PRK07811 161 SITDIAALAELAHDAGAKVVVDNTFASPYL 190 (388)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 2 2334899999999999997776665543
No 147
>PLN02775 Probable dihydrodipicolinate reductase
Probab=36.08 E-value=2.1e+02 Score=26.76 Aligned_cols=71 Identities=10% Similarity=-0.069 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
++..|..+.-+|.|++++..-. .+.+.+.++.+.+.|+---+|.+.|+.++++++.+...-+.++-.+||+
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~-----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTL-----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCC-----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 4555655555678877776532 3457777888888998888999999998888776541124444444444
No 148
>PLN02428 lipoic acid synthase
Probab=36.00 E-value=4.1e+02 Score=25.64 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCC----CC--CChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHH
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMAD----HY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~----~Y--G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (324)
..+.++..++.+.+.+.|++++=-.. .| +..+. +.+.++....... .+...+ .+ +. ...+ +
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P-~i~Ie~--L~---pd-f~~d-----~ 195 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKP-EILVEA--LV---PD-FRGD-----L 195 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCC-CcEEEE--eC---cc-ccCC-----H
Confidence 34566777888888889998763221 12 22333 4555655443211 222222 11 11 0112 2
Q ss_pred hHHHHHhhcCCCccceEEeecCCC----------CCCCHHHHHHHHHHHHHc--CCcc----EEEecCCCHHHHHHHHHc
Q 020566 181 SIDVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIK----TVALTNFDTERLRIILEN 244 (324)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~----------~~~~~~e~~~aL~~l~~~--G~Ir----~iGvSn~~~~~l~~~~~~ 244 (324)
.+-+.|..-| +|.|. |+++. .....++.++.++.+++. |..- -+|+ .-+.+++.+.++.
T Consensus 196 elL~~L~eAG---~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~ 270 (349)
T PLN02428 196 GAVETVATSG---LDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMED 270 (349)
T ss_pred HHHHHHHHcC---CCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHH
Confidence 2223333444 55533 66653 122478899999999998 7653 2566 4566666665541
Q ss_pred --CCCeEEEee-cC-Cc------cCC--Ccc--HHHHHHHHHcCceEEEccccc
Q 020566 245 --GIPVVSNQV-QH-SV------VDM--RPQ--QKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 245 --g~~~~~~Q~-~y-n~------l~~--~~~--~~ll~~~~~~gI~via~spLa 284 (324)
...++++.+ +| .| +++ .++ +.+-+++.+.|...++-+||-
T Consensus 271 Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 271 LRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred HHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 222333322 12 11 011 122 267788889999999999985
No 149
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=35.95 E-value=3e+02 Score=26.57 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccccCc
Q 020566 212 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 212 ~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
....+..+...+-+...-+...+.+.++++++...+..++..+.||.-. .+.+++.+.|+++|+.++.=...+.|.
T Consensus 104 ~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~ 180 (386)
T PRK08045 104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPA 180 (386)
T ss_pred HHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 3333344444343333223345566666655433445555555555311 223477888888888777666555443
No 150
>PRK02399 hypothetical protein; Provisional
Probab=35.94 E-value=78 Score=31.10 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=43.0
Q ss_pred HHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHH
Q 020566 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILE 243 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~ 243 (324)
....+.+-|+..| .|++.+|.-.. -=++||+|.++|.+..+ |+-+..++++..+.+
T Consensus 200 ~v~~~~~~Le~~G---yEvlVFHATG~-------GGraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~ 269 (406)
T PRK02399 200 CVQAAREELEARG---YEVLVFHATGT-------GGRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAAR 269 (406)
T ss_pred HHHHHHHHHHhCC---CeEEEEcCCCC-------chHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHH
Confidence 3344455555555 69999997542 23578999999998764 555677889999988
Q ss_pred cCCC
Q 020566 244 NGIP 247 (324)
Q Consensus 244 ~g~~ 247 (324)
.|+|
T Consensus 270 ~gIP 273 (406)
T PRK02399 270 TGIP 273 (406)
T ss_pred cCCC
Confidence 8875
No 151
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=35.82 E-value=2.7e+02 Score=25.59 Aligned_cols=77 Identities=10% Similarity=-0.000 Sum_probs=48.8
Q ss_pred CHH-HHHHHHHHHHHcCCCeeecCCCCCC---h-H--HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHh
Q 020566 109 DRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (324)
Q Consensus 109 ~~~-~~~~~l~~Al~~Gin~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (324)
+++ +...+.+.+.++|..|+=|+..|+. . | +++-+.+++..... +..++.+.- -.+.+...+-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~----~vgIKAsGG------Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAK----TVGFKPAGG------VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCC----CeeEEccCC------CCCHHHHHHH
Confidence 445 4788999999999999999999853 2 2 22333332211000 112222221 3477888888
Q ss_pred HHHHHhhcCCCccc
Q 020566 182 IDVSRRRMDVPCLD 195 (324)
Q Consensus 182 le~SL~rLg~dyiD 195 (324)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 99999999998765
No 152
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.74 E-value=1.2e+02 Score=25.85 Aligned_cols=95 Identities=22% Similarity=0.281 Sum_probs=49.8
Q ss_pred HHHhHHHHHhhcCCCc----cceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC--CeEE
Q 020566 178 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 250 (324)
Q Consensus 178 i~~~le~SL~rLg~dy----iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~--~~~~ 250 (324)
.++.++..++++|.+. ++.+.-.+.. -.+ ..++.+.|++|++.| ++-.-+||.+...+...++. |+ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLR-LPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 3456666777777652 1111111111 111 445777889999888 55566788888877776653 43 2443
Q ss_pred EeecCCccCCCccHH-HHHHHHHcCc
Q 020566 251 NQVQHSVVDMRPQQK-MAELCQLTGV 275 (324)
Q Consensus 251 ~Q~~yn~l~~~~~~~-ll~~~~~~gI 275 (324)
+-..-..-...+..+ ....|++.|+
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~ 163 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGV 163 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCC
Confidence 322222212344444 4444555554
No 153
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=35.61 E-value=2.5e+02 Score=26.74 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=37.7
Q ss_pred ccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccccCcC
Q 020566 225 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 225 Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
++..-+-..+.+.+++++....+..++..+.||.-. ..-+++.+.|+++|+.++.=...+.+.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 344444444666666665443445555566676422 1233788888888888887666654444
No 154
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=35.59 E-value=2.5e+02 Score=26.21 Aligned_cols=86 Identities=6% Similarity=0.006 Sum_probs=59.2
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~ 271 (324)
.++.++..|-+. . +.+.++.++-.+. +.|=|-++.+.+..+++.+ ..+++|+.....-. ..-.++.+.|+
T Consensus 183 ~~i~~iEqP~~~---~----~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~ 254 (307)
T TIGR01927 183 GRIAFLEEPLPD---A----DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAH 254 (307)
T ss_pred CCceEEeCCCCC---H----HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHH
Confidence 577777777422 1 5566676664433 5666778888999988765 37778887664321 12348999999
Q ss_pred HcCceEEEccccccCc
Q 020566 272 LTGVKLITYGTVMGGL 287 (324)
Q Consensus 272 ~~gI~via~spLa~G~ 287 (324)
.+||.++..+.+.+|+
T Consensus 255 ~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 255 RLGLQAVFSSVFESSI 270 (307)
T ss_pred HcCCCEEEECccchHH
Confidence 9999999877666654
No 155
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=35.53 E-value=2.4e+02 Score=28.21 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=41.4
Q ss_pred HhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
...+|.|++-+.+... .+.....+. ...+.+... ++.+||- |-+++.+.++.+. ..++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~-SpR~V~~~~-a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEK-SPRYVSLEQ-AQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCC-CCCCCCHHH-HHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCCC
Confidence 4567899988864322 222222333 332332222 8899996 8888888887765 468999998753
No 156
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=35.52 E-value=4.4e+02 Score=25.86 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCC-eeecCCCCCChHHHHHHHHh-hhhhcCCCcceeEEEEecc--------cCCCCCCCCHHH
Q 020566 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFIN-RVRRERPPEFLDKVRGLTK--------WVPPPVKMTSSI 177 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin-~fDTA~~YG~sE~~lG~al~-~~~r~r~~~~~~~v~i~tK--------~~~~~~~~~~~~ 177 (324)
.+-++-.+-+..|.+.|.. ..|-+. .|+-+++ -+++- .. ++-|.|- ......+++.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~ei-R~~ii~~s----------~vPvGTVPIYqA~~~~~~~~~~~t~d~ 142 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEI-REWIIRNS----------PVPVGTVPIYQALEEVNGKVEDLTEDD 142 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHH-HHHHHhcC----------CCCcCCchHHHHHHHHhcchhhCCHHH
Confidence 3556667788899999965 456664 3664443 44442 21 2223331 111123678888
Q ss_pred HHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
+.+.+++..+ +-+|.+-||.- -.++.++.+++.|++ .|+.+-.-.-+..++-.. ..=||
T Consensus 143 ~~~~v~~qa~----~GVdfmTIHaG--------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~-------~~ENp 201 (432)
T COG0422 143 FFDTVEKQAE----QGVDFMTIHAG--------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHN-------HKENP 201 (432)
T ss_pred HHHHHHHHHH----hCCcEEEeehh--------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHc-------CCcCc
Confidence 8888888776 45788899952 256778899999986 565544444444433211 11234
Q ss_pred cCCCccHHHHHHHHHcCceEEEccccccCcCCCCc
Q 020566 258 VDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 292 (324)
Q Consensus 258 l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~ 292 (324)
++ ..-+++++.|+++++.+- |+-|+=.|..
T Consensus 202 ly-~~fd~lleI~k~yDvtlS----LGDglRPG~i 231 (432)
T COG0422 202 LY-EHFDELLEIFKEYDVTLS----LGDGLRPGCI 231 (432)
T ss_pred hh-hhHHHHHHHHHHhCeeee----ccCCCCCCcc
Confidence 32 223378888888888763 4444444433
No 157
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.36 E-value=4.1e+02 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=21.3
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEee
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH 200 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH 200 (324)
+.+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 457788888777554 5899999888776
No 158
>PRK09248 putative hydrolase; Validated
Probab=35.12 E-value=3.3e+02 Score=24.32 Aligned_cols=85 Identities=15% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-----CCHHH-HHHHHHcCCCeEEEeecCCcc------
Q 020566 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTER-LRIILENGIPVVSNQVQHSVV------ 258 (324)
Q Consensus 191 ~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-----~~~~~-l~~~~~~g~~~~~~Q~~yn~l------ 258 (324)
.||+ ++.+|+.........+-.+.+.++.+.|.+--+|=-. ..... ++.+.+.|..+ |++.+.+
T Consensus 94 ~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~~l---EvN~~~l~~~~~g 169 (246)
T PRK09248 94 LDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNVAL---EINNSSFGHSRKG 169 (246)
T ss_pred CCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCCEE---EEECCCCccCCCC
Confidence 3555 5567865322112333445555555888876555221 12233 44555556534 4433322
Q ss_pred CCCccHHHHHHHHHcCceEEE
Q 020566 259 DMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 259 ~~~~~~~ll~~~~~~gI~via 279 (324)
...+...+++.+.++|+.++.
T Consensus 170 ~~~~~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 170 SEDNCRAIAALCKKAGVWVAL 190 (246)
T ss_pred CcChHHHHHHHHHHcCCeEEE
Confidence 112455799999999987554
No 159
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.87 E-value=4.5e+02 Score=25.75 Aligned_cols=106 Identities=16% Similarity=0.257 Sum_probs=48.4
Q ss_pred CCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCCC-----ccceEEeecCCCCC
Q 020566 132 DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP-----CLDMLQFHWWDYSN 206 (324)
Q Consensus 132 ~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~d-----yiDl~~lH~p~~~~ 206 (324)
-+||. |+.|-++|++..+...++ -++|.|-.. ++-+-+.++...++++.+ .+.++.+|.|+...
T Consensus 61 ~V~Gg-~~~L~~~i~~~~~~~~p~---~I~v~~tC~-------~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 61 AVFGG-EDNLIEALKNLLSRYKPD---VIGVLTTCL-------TETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred eeECc-HHHHHHHHHHHHHhcCCC---EEEEECCcc-------hhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 34564 444567776653322111 234444221 223333344444444321 34566677765543
Q ss_pred C---CHHHHHHHHHHH-------HHcCCccEEEecCC---CHHHHHHHHHc-CCCe
Q 020566 207 P---GYLDALNHLTDL-------KEEGKIKTVALTNF---DTERLRIILEN-GIPV 248 (324)
Q Consensus 207 ~---~~~e~~~aL~~l-------~~~G~Ir~iGvSn~---~~~~l~~~~~~-g~~~ 248 (324)
. +.+.++++|-+. ++.++|--||-++. +.+.+.++++. |+++
T Consensus 130 ~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 130 SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 2 123344443322 13345666765554 34566666653 5443
No 160
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=34.73 E-value=2.6e+02 Score=23.32 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=44.1
Q ss_pred eeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
+..+.|+-|++.. ...+..+++-+.+..+.+. +...|++++-.+.....++.+..+.|..+.+.
T Consensus 49 RlG~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4456667676432 4577788887777776542 33459999988876666678888888777765
No 161
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=34.65 E-value=4.4e+02 Score=25.59 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=54.8
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 272 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~ 272 (324)
=|.+++-.|. +......+..+...+-++-.-+...+.+.+++++..+.+..++..+-||.-. ....++.+.|++
T Consensus 92 Gd~Il~~~~~-----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~ 166 (388)
T PRK08861 92 DDLIVAPHDC-----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA 166 (388)
T ss_pred CCEEEEcCCc-----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 3556554432 3344444444444444555545555677777776544556666666666422 234589999999
Q ss_pred cCceEEEccccccCcCC
Q 020566 273 TGVKLITYGTVMGGLLS 289 (324)
Q Consensus 273 ~gI~via~spLa~G~Lt 289 (324)
+|+.++.=...+.|.+.
T Consensus 167 ~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 167 VGALVAVDNTFLTPVLQ 183 (388)
T ss_pred cCCEEEEECCccccccC
Confidence 99999977777666543
No 162
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=34.30 E-value=84 Score=29.25 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=51.5
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC------CCHHHHHHHHHc-CCCeEEEeecCCccCCCccHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKM 266 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn------~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~~~l 266 (324)
.|+..+..|-..-- .++ ..++...+ +|=|+. |+..++.++.++ ++++.++-+.||+.+ . ++
T Consensus 164 ~~~~IIDsaaG~gC---pVi---~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~---s-~i 231 (284)
T COG1149 164 ADLLIIDSAAGTGC---PVI---ASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD---S-EI 231 (284)
T ss_pred cceeEEecCCCCCC---hHH---HhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc---h-HH
Confidence 78888877632211 122 22333333 344443 344555565554 889999999997643 2 79
Q ss_pred HHHHHHcCceEEEcccccc
Q 020566 267 AELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 267 l~~~~~~gI~via~spLa~ 285 (324)
.++|++.|+.+++--|+..
T Consensus 232 e~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 232 EEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred HHHHHHcCCCeeEECCcch
Confidence 9999999999999999854
No 163
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=34.19 E-value=3.2e+02 Score=26.26 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+...+ +-+.|.++|+++|++- +|.. .++-++.+..+.+.+. .+-.+.+....+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~----~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVE-IARKLDELGVDVIEAG---FPIA----SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC----ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 345554444 4455999999999975 3321 1234666677766555 55556677778889988888755433
Q ss_pred EeecCCccC------CCc------cHHHHHHHHHcCceEE
Q 020566 251 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 278 (324)
Q Consensus 251 ~Q~~yn~l~------~~~------~~~ll~~~~~~gI~vi 278 (324)
+-+..|..+ ... -.+.+++++++|..+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 333333321 111 1268889999998754
No 164
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.97 E-value=4.3e+02 Score=25.33 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=64.1
Q ss_pred EEeecCCCC----------CCCHHHHHHHHHHHHHcC--C--ccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 020566 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (324)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G--~--Ir~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~yn~l 258 (324)
+-||.++++ ...+++.++++.+..+.+ + ++++=+. |-+.+.++++.+ .+.+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568877542 112577888877776654 2 3344444 566677777765 245667888999987
Q ss_pred CCC----cc----HHHHHHHHHcCceEEEccccc------cCcCCCCcCC
Q 020566 259 DMR----PQ----QKMAELCQLTGVKLITYGTVM------GGLLSEKFLD 294 (324)
Q Consensus 259 ~~~----~~----~~ll~~~~~~gI~via~spLa------~G~Ltg~~~~ 294 (324)
... +. ..+.+..+++||.+....+.+ .|.|..+...
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~ 340 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKLDK 340 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCcccccccC
Confidence 421 21 256777889999999998775 4777765544
No 165
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=33.93 E-value=2.4e+02 Score=22.68 Aligned_cols=64 Identities=2% Similarity=-0.254 Sum_probs=44.7
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCCC---ccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~d---yiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
.+..+.|+-|++. ..-+..+++-+.+..+.+..+ -.|++++-.+.....++.+..+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 3556667777654 456778888888887776543 479999988876665677777777766553
No 166
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=33.92 E-value=4.6e+02 Score=25.67 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=60.1
Q ss_pred hhcCCCccceEEeecCCC----CCCCHHHHHHHHHHHHHc-CCccEEEec---CCCHHHHHHHHHc--CCCeEEEeecCC
Q 020566 187 RRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILEN--GIPVVSNQVQHS 256 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~----~~~~~~e~~~aL~~l~~~-G~Ir~iGvS---n~~~~~l~~~~~~--g~~~~~~Q~~yn 256 (324)
+.+| +|++.||.-+. .+...++..++.++..+. +.---|+-| ..+++.++++++. |-++-++-....
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e 226 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLD 226 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCch
Confidence 5565 57888876432 222345666666666443 333345545 5688889988874 434554443322
Q ss_pred ccCCCccHHHHHHHHHcCceEEEccccccCcC
Q 020566 257 VVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 257 ~l~~~~~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
. .-+++.+.|+++|..+++++|..-|.+
T Consensus 227 ~----Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 227 L----DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred h----hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 1 223899999999999999999887644
No 167
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.86 E-value=1.8e+02 Score=25.78 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=49.2
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q 252 (324)
+++...+-+ +.|..-|++.|.+= +- .+ +.++.+++++++.-=..||.-+ -+.++++.+.+.|..|.+
T Consensus 25 ~~~~a~~i~-~al~~~Gi~~iEit---l~---~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-- 92 (212)
T PRK05718 25 KLEDAVPLA-KALVAGGLPVLEVT---LR---TP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-- 92 (212)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEe---cC---Cc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--
Confidence 344444433 34555566655554 21 12 3455556665543324577654 456788888888765543
Q ss_pred ecCCccCCCccHHHHHHHHHcCceEE
Q 020566 253 VQHSVVDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 253 ~~yn~l~~~~~~~ll~~~~~~gI~vi 278 (324)
+| ....+++++|++++|.++
T Consensus 93 ---sP---~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 93 ---SP---GLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred ---CC---CCCHHHHHHHHHcCCCEe
Confidence 22 223478888888888777
No 168
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=33.49 E-value=1.1e+02 Score=29.06 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred EeecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------------EecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 198 QFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------------ALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 198 ~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------------GvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
.+...+...+ +++-+..|+.+.+.| +|++ |+|++..+.++++.+.|+.+|+-.+...-
T Consensus 97 ~~l~~ega~~-~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt 174 (313)
T COG2355 97 AVLHMEGAEP-LGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDKT 174 (313)
T ss_pred EEEeccCccc-ccccHHHHHHHHHhC-ceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCcc
Q ss_pred cC------------------------CCccHHHHHHHHHcC--ceEEEcccc
Q 020566 258 VD------------------------MRPQQKMAELCQLTG--VKLITYGTV 283 (324)
Q Consensus 258 l~------------------------~~~~~~ll~~~~~~g--I~via~spL 283 (324)
+. |+-.++.++...++| |++..+..+
T Consensus 175 ~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~f 226 (313)
T COG2355 175 FWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAF 226 (313)
T ss_pred HHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhh
No 169
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.27 E-value=4.8e+02 Score=25.64 Aligned_cols=150 Identities=7% Similarity=-0.021 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChH--HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
+.++..+.++.+++.|++.|=.--.-...+ +.+ +++++.-.+ ++.+.--. + ..++.+...+-++ .|
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~-------~~~L~vDa-N--~~w~~~~A~~~~~-~L 263 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGP-------DNKLMIDA-N--QRWDVPEAIEWVK-QL 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCC-------CCeEEEEC-C--CCCCHHHHHHHHH-Hh
Confidence 456666777888899999875421111111 111 233321111 22222222 1 1456665444332 22
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC----CccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-C
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-R 261 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G----~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~ 261 (324)
+. .++.++..|-+. +-++.+.++++.. .--+.|=|.++...+.++++.+ ..+++|+...-.-. .
T Consensus 264 ~~-----~~l~~iEEP~~~-----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~~GGit 332 (415)
T cd03324 264 AE-----FKPWWIEEPTSP-----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCRLGGVN 332 (415)
T ss_pred hc-----cCCCEEECCCCC-----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccccCCHH
Confidence 33 456677766432 2355566676654 3335566778899999998875 48888888664321 1
Q ss_pred ccHHHHHHHHHcCceEEEcc
Q 020566 262 PQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 262 ~~~~ll~~~~~~gI~via~s 281 (324)
.-.++.+.|+.+|+.+..++
T Consensus 333 ~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 333 ENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHHcCCeEEEcC
Confidence 23489999999999998874
No 170
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.01 E-value=2.8e+02 Score=24.13 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCC------hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHh
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (324)
.+.++...+.+.|.++|..|+=|+..|.. .-+.+.+.++ .+ ..++++. . -.+.+++.+-
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~-----v~ik~aG----G--ikt~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR-----VGVKAAG----G--IRTLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC-----ceEEEeC----C--CCCHHHHHHH
Confidence 35678889999999999999999987752 1233444443 21 1344432 1 1166777777
Q ss_pred HHHHHhhcCC
Q 020566 182 IDVSRRRMDV 191 (324)
Q Consensus 182 le~SL~rLg~ 191 (324)
++.-..|+|+
T Consensus 193 ~~~g~~riG~ 202 (203)
T cd00959 193 IEAGATRIGT 202 (203)
T ss_pred HHhChhhccC
Confidence 7777777776
No 171
>PLN02444 HMP-P synthase
Probab=32.96 E-value=5.7e+02 Score=26.45 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHcCCCe-eecCCCCCChHHHHHHHH-hhhhhcCCCcceeEEEEec--------ccCCCCCCCCHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTT-FDMADHYGPAEDLYGIFI-NRVRRERPPEFLDKVRGLT--------KWVPPPVKMTSSI 177 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~-fDTA~~YG~sE~~lG~al-~~~~r~r~~~~~~~v~i~t--------K~~~~~~~~~~~~ 177 (324)
.+.++-.+-+..|++.|-.. .|-+. .|+-.+ +-+++ +..+ +-|.| |......+.+.+.
T Consensus 234 s~ie~EveK~~~A~~~GADTvMDLST-Ggdi~~-iR~~Il~~sp----------vPVGTVPIYqA~~~~~~~~~~lt~d~ 301 (642)
T PLN02444 234 SSIEEEVYKLQWATMWGADTVMDLST-GRHIHE-TREWILRNSP----------VPVGTVPIYQALEKVDGIAENLTWEV 301 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHH-HHHHHHHcCC----------CCccCccHHHHHHHhcCChhhCCHHH
Confidence 45566677789999999764 46553 345333 24444 2222 22232 1111223678888
Q ss_pred HHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
+.+.+++..+ +-+|.+-||.-- .++.++.++ + |..|+-+-.-.-+..++... -.=|+
T Consensus 302 ~~d~ieeQae----qGVDfmTIH~Gv--------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~-------~kENP 358 (642)
T PLN02444 302 FRETLIEQAE----QGVDYFTIHAGV--------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAY-------HKENF 358 (642)
T ss_pred HHHHHHHHHH----hCCCEEEEChhh--------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHc-------CCcCc
Confidence 8888888776 457888999641 344445454 3 66777655555544443321 11233
Q ss_pred cCCCccHHHHHHHHHcCceEEEccccccCcCCCCc
Q 020566 258 VDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 292 (324)
Q Consensus 258 l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~ 292 (324)
++ ..-+++++.|++++|.+- |+-|+=.|..
T Consensus 359 lY-e~FD~ileI~k~YDVtlS----LGDGLRPG~i 388 (642)
T PLN02444 359 AY-EHWDDILDICNQYDIALS----IGDGLRPGSI 388 (642)
T ss_pred hH-HHHHHHHHHHHHhCeeee----ccCCcCCCcc
Confidence 32 223378888888888763 4555544443
No 172
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=32.79 E-value=3.7e+02 Score=26.03 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (324)
.++.+... .+-+.|.++|+++|++- +|... ++-++.++.+.+.|+ .+.++.+-.....++.+.+.|.+...
T Consensus 22 ~~s~e~k~-~ia~~L~~~GV~~IE~G---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEKL-AIARMLDEIGVDQIEAG---FPAVS----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHHH-HHHHHHHHhCCCEEEEe---CCCcC----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 45555444 44556999999999975 34321 223555666666664 44455554557788888887755433
Q ss_pred EeecCCccC------CCc------cHHHHHHHHHcCceEEE
Q 020566 251 NQVQHSVVD------MRP------QQKMAELCQLTGVKLIT 279 (324)
Q Consensus 251 ~Q~~yn~l~------~~~------~~~ll~~~~~~gI~via 279 (324)
+-+..|..+ ... -.+.+++++++|+.+..
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 333333321 111 12578899999987654
No 173
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.66 E-value=2e+02 Score=25.23 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=48.2
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCH----HHHHHHHHcCCCeEEE
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 251 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~----~~l~~~~~~g~~~~~~ 251 (324)
..+.+.+++.++.+|.+. +++ .+... +..+..+.++++.++| +..|=++..++ +.++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~-d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQN-DPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTT-THHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCC-CHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 568888999999998743 332 11222 2577888899999888 88888876554 5666766677765554
Q ss_pred ee
Q 020566 252 QV 253 (324)
Q Consensus 252 Q~ 253 (324)
-.
T Consensus 87 d~ 88 (257)
T PF13407_consen 87 DS 88 (257)
T ss_dssp SS
T ss_pred ec
Confidence 33
No 174
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.39 E-value=4.5e+02 Score=25.04 Aligned_cols=80 Identities=14% Similarity=-0.033 Sum_probs=43.9
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceE-Eeec-CCCCC---CCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCC
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDML-QFHW-WDYSN---PGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGI 246 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~-~lH~-p~~~~---~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~ 246 (324)
.+.+... .+-+-|+.+|+|||++- ..|. +.+.. .......+...++++.=.+.-+++-+ ++++.++++++.+
T Consensus 221 ~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g- 298 (353)
T cd02930 221 STWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADG- 298 (353)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCC-
Confidence 4555443 34455788899888872 2232 21110 00111233456667766666666644 5788888888765
Q ss_pred CeEEEeec
Q 020566 247 PVVSNQVQ 254 (324)
Q Consensus 247 ~~~~~Q~~ 254 (324)
..+.+++-
T Consensus 299 ~~D~V~~g 306 (353)
T cd02930 299 DADMVSMA 306 (353)
T ss_pred CCChhHhh
Confidence 25555543
No 175
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=32.17 E-value=2e+02 Score=28.65 Aligned_cols=85 Identities=8% Similarity=0.032 Sum_probs=55.1
Q ss_pred eEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcC
Q 020566 196 MLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTG 274 (324)
Q Consensus 196 l~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~g 274 (324)
+.++..|-+... ..+.++.|.++++...|. +.|=+.++...+..+++.+ -.++.|......--..-.++.+.|+.+|
T Consensus 252 ~~~iEePv~~~d-~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~-avdi~~~d~~~gGIt~~~kIa~lA~a~G 329 (441)
T TIGR03247 252 LAYAEDPCGAEQ-GYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQ-AVDIPLADPHFWTMQGSVRVAQMCHDWG 329 (441)
T ss_pred hceEeCCCCccc-ccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhC-CCCEEeccCCcchHHHHHHHHHHHHHcC
Confidence 445666643221 112367778887776655 4566778889999988865 3677777753210112348999999999
Q ss_pred ceEEEccc
Q 020566 275 VKLITYGT 282 (324)
Q Consensus 275 I~via~sp 282 (324)
|.+..++.
T Consensus 330 i~v~~h~~ 337 (441)
T TIGR03247 330 LTWGSHSN 337 (441)
T ss_pred CEEEEeCC
Confidence 99988753
No 176
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=32.01 E-value=2.6e+02 Score=22.28 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=44.6
Q ss_pred eeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCC----C--ccceEEeecCCCCCCCHHHHHHHHHHHH
Q 020566 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----P--CLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (324)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~----d--yiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (324)
+..+.|+.|.... ...+..+++.+.++.+.... . ..|++++-.+.....++.+..+.|+.+.
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 4567777785433 45788899999988887754 2 5799999988766666777666666553
No 177
>PRK07534 methionine synthase I; Validated
Probab=31.89 E-value=4.6e+02 Score=25.01 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=91.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--------hH----HHHHHHHhhhhhcCCCcceeEEEEecccCCCC-
Q 020566 104 GWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--------AE----DLYGIFINRVRRERPPEFLDKVRGLTKWVPPP- 170 (324)
Q Consensus 104 ~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--------sE----~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~- 170 (324)
.|+-..++...++=+.++++|-+.+=|.....+ .| ++.-.+++-...-+. ....+++|..-++|..
T Consensus 38 lwsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~-~~~~~~~VaGsIGP~g~ 116 (336)
T PRK07534 38 LWNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVAD-KAGRKVIVAGSVGPTGE 116 (336)
T ss_pred HhcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-hcCCccEEEEecCCCcc
Confidence 444334566667777888999999986654222 11 111222211110000 1111345555555432
Q ss_pred -----CCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC---------CCHH
Q 020566 171 -----VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTE 236 (324)
Q Consensus 171 -----~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn---------~~~~ 236 (324)
...+.+.+.+.....++.|--.-+|++++.-. +.+.|+..+++-+++.|+=-.+.++- .+.+
T Consensus 117 ~l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~ 192 (336)
T PRK07534 117 IMEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI----SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPA 192 (336)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHH
Confidence 12466778888888888885456999998753 23667766677777667655555553 2223
Q ss_pred HHHHHHH-cCCCeEEEeecCCccCCCcc---HHHHHHHHHc-CceEEEccc
Q 020566 237 RLRIILE-NGIPVVSNQVQHSVVDMRPQ---QKMAELCQLT-GVKLITYGT 282 (324)
Q Consensus 237 ~l~~~~~-~g~~~~~~Q~~yn~l~~~~~---~~ll~~~~~~-gI~via~sp 282 (324)
.+.++++ .+..++++-+++.. .++ ..+++..... ++.+++|--
T Consensus 193 ~~~~~~~~~~~~~~avGvNC~~---gp~~~~~~l~~~~~~~~~~pl~vyPN 240 (336)
T PRK07534 193 DLADLVEKLGEPPLAFGANCGV---GASDLLRTVLGFTAQGPERPIIAKGN 240 (336)
T ss_pred HHHHHHHhcCCCceEEEecCCC---CHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 3333333 23346777777763 122 2334444333 566666654
No 178
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.58 E-value=3.9e+02 Score=25.65 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHcCCCeEEEeecCCccCCC-ccHHHHHHHHHcCceEEEccccccC
Q 020566 233 FDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 233 ~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via~spLa~G 286 (324)
.+++.++++++...+..++....|+.-.- +-+++.+.|+++|+.++.=...+.|
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 35566665554333455555555553221 2346777788888777765555444
No 179
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=31.54 E-value=3.5e+02 Score=23.49 Aligned_cols=150 Identities=12% Similarity=0.034 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHh
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (324)
.+.+++.+.++.+++.|++..|.- ++.+..+++..++-.. ..++++.-- ....+.+++.+..-..
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~------~~~l~p~m~~iG~~w~---~gei~va~~------~~a~~~~~~~l~~l~~ 73 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI------EKGLMAGMGVVGKLFE---DGELFLPHV------MMSADAMLAGIKVLTP 73 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHHHHHHHHc---CCCccHHHH------HHHHHHHHHHHHHHHH
Confidence 367899999999999998766543 2233444433221100 001111100 1122334444443333
Q ss_pred hcCCC----ccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc
Q 020566 188 RMDVP----CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP 262 (324)
Q Consensus 188 rLg~d----yiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~ 262 (324)
.+..+ .---+++-.+..+..++ ...-.-.-+...|. |.++|.. -+++.+.+.++. ..|+++.+.++......
T Consensus 74 ~~~~~~~~~~~~~vv~~t~~gd~H~l-G~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~ 150 (197)
T TIGR02370 74 EMEKAVETEVLGKVVCGVAEGDVHDI-GKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKK-EKPLMLTGSALMTTTMY 150 (197)
T ss_pred HhhccccCCCCCeEEEEeCCCchhHH-HHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHH-cCCCEEEEccccccCHH
Confidence 33311 11122333332222211 22222234556674 6677754 345555554443 24666666665432222
Q ss_pred -cHHHHHHHHHcCc
Q 020566 263 -QQKMAELCQLTGV 275 (324)
Q Consensus 263 -~~~ll~~~~~~gI 275 (324)
-.++++.+++.|.
T Consensus 151 ~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 151 GQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHcCC
Confidence 2367778887754
No 180
>PRK15108 biotin synthase; Provisional
Probab=31.46 E-value=4.7e+02 Score=24.96 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCCeEE
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVVS 250 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn--~~~~~l~~~~~~g~~~~~ 250 (324)
.+++.|.+.+.. ..++|+..+ .....+.++....++...+.++.+++.|. .+.+|+ .+.+.++++.+.|+.-..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 567777776654 456788777 33333323322225556666677776664 233444 667788888777643111
Q ss_pred Eeec-----CCccC--CCccH--HHHHHHHHcCceEEEccccccC
Q 020566 251 NQVQ-----HSVVD--MRPQQ--KMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 251 ~Q~~-----yn~l~--~~~~~--~ll~~~~~~gI~via~spLa~G 286 (324)
+-++ |.-+. ...++ +.++.+++.|+.+-+-..++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1111 11111 11122 6777788888766544444433
No 181
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.13 E-value=4.2e+02 Score=25.50 Aligned_cols=87 Identities=20% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEe--cCCCHHHHHHHHH--cCCCeEEEeecCCccCCC----c-c---HHHHHHHHH
Q 020566 209 YLDALNHLTDLKEE-GK---IKTVAL--TNFDTERLRIILE--NGIPVVSNQVQHSVVDMR----P-Q---QKMAELCQL 272 (324)
Q Consensus 209 ~~e~~~aL~~l~~~-G~---Ir~iGv--Sn~~~~~l~~~~~--~g~~~~~~Q~~yn~l~~~----~-~---~~ll~~~~~ 272 (324)
+++.++++.++.+. |+ +-++=+ -|-+++.++++.+ .+.++.++-++||+.... + + ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 77888888777554 32 122222 3778888888776 366788999999986421 1 2 257777889
Q ss_pred cCceEEEccccc------cCcCCCCcCCC
Q 020566 273 TGVKLITYGTVM------GGLLSEKFLDT 295 (324)
Q Consensus 273 ~gI~via~spLa------~G~Ltg~~~~~ 295 (324)
+||.+......+ .|.|..++...
T Consensus 305 ~gi~~tiR~~~G~di~aACGqL~~~~~~~ 333 (344)
T PRK14464 305 RGVLTKVRNSAGQDVDGGCGQLRARAAKA 333 (344)
T ss_pred CCceEEEECCCCCchhhcCcchhhhhccc
Confidence 999999988875 47777665543
No 182
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=30.93 E-value=1.9e+02 Score=28.23 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=50.8
Q ss_pred HcCCCeee-----cCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCC--------CCCCCCH----HHHHHhHHH
Q 020566 122 DAGLTTFD-----MADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP--------PPVKMTS----SIVRESIDV 184 (324)
Q Consensus 122 ~~Gin~fD-----TA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~--------~~~~~~~----~~i~~~le~ 184 (324)
+.+..-|| ++.-+...+..|.+.+++.+++ -.+|-||... .+..++. +.|++.+.+
T Consensus 109 ~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~-------fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTENDVQLAKEIQRMGKK-------FYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HTTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-E-------EEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HccccccCEEEEEeCCCCchhhHHHHHHHHHcCCc-------EEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 44555555 3444455677788888876544 5677888531 2234444 467888899
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHH
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT 217 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~ 217 (324)
.|++-|+..-.+|++-+.+....++....++|+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHH
Confidence 999999999999999888776655555554444
No 183
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.90 E-value=4.5e+02 Score=25.22 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=38.3
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeec-CCC-----------CCCCHH---HHH-HHHHHHHHcCCccEEEecCCCH
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYL---DAL-NHLTDLKEEGKIKTVALTNFDT 235 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~-----------~~~~~~---e~~-~aL~~l~~~G~Ir~iGvSn~~~ 235 (324)
..+.+.+++.++..+ .|+.++|.+|.+.- |.. ..++.+ +.+ .+.+.|.+.|. ..+++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 458888888888766 48999999998752 220 011111 122 24455666776 4577888764
No 184
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=30.72 E-value=4.9e+02 Score=24.97 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=59.2
Q ss_pred CccceE-EeecCCCC----------CCCHHHHHHHHHHHHH-cCC---ccEEEec--CCCHHHHHHHHHc--CC-----C
Q 020566 192 PCLDML-QFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GI-----P 247 (324)
Q Consensus 192 dyiDl~-~lH~p~~~----------~~~~~e~~~aL~~l~~-~G~---Ir~iGvS--n~~~~~l~~~~~~--g~-----~ 247 (324)
.++||. -||.++++ ...+++.++++.+..+ .|. |+++=+. |.+.+.++++.+. +. .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 457875 47776432 1236777777776665 343 3444443 5666677766651 22 4
Q ss_pred eEEEeecCCccCCC------cc----HHHHHHHHHcCceEEEcccccc
Q 020566 248 VVSNQVQHSVVDMR------PQ----QKMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~------~~----~~ll~~~~~~gI~via~spLa~ 285 (324)
..++-++||++... +. ..+.+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 67889999987422 11 2677788899999998887753
No 185
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=30.62 E-value=1.3e+02 Score=27.37 Aligned_cols=66 Identities=5% Similarity=-0.163 Sum_probs=46.5
Q ss_pred HHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccccc
Q 020566 218 DLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 218 ~l~~~G~Ir~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spLa 284 (324)
+-.++|+. .+| ++.-++...+.+...|..+.++=.|+.+++...-..++..++..|+..+..-|-.
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 33444664 344 3444555555555678889999999999876655688889999999988877653
No 186
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=30.57 E-value=1.6e+02 Score=28.84 Aligned_cols=81 Identities=16% Similarity=0.052 Sum_probs=55.9
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCc--c-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI--K-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAEL 269 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I--r-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~ 269 (324)
+|+.++..|-+ .+-++.+.+|++.-.+ . .-|-+.++...++.+++.+ ..+++|+...-.-. ..-.++.+.
T Consensus 234 ~~l~wiEEPl~-----~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~-a~Divq~d~~~~GGit~~~kia~l 307 (394)
T PRK15440 234 YGLKWIEECLP-----PDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG-CIDIIQPDVGWCGGLTELVKIAAL 307 (394)
T ss_pred cCCcceeCCCC-----cccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC-CCCEEeCCccccCCHHHHHHHHHH
Confidence 35556665532 2346667778877542 2 3477888999999998875 48888988764321 123389999
Q ss_pred HHHcCceEEEc
Q 020566 270 CQLTGVKLITY 280 (324)
Q Consensus 270 ~~~~gI~via~ 280 (324)
|+.+|+.++.+
T Consensus 308 A~a~gi~~~pH 318 (394)
T PRK15440 308 AKARGQLVVPH 318 (394)
T ss_pred HHHcCCeeccc
Confidence 99999999876
No 187
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=30.57 E-value=4.3e+02 Score=24.21 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=60.8
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeEEE
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 251 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--g~~~~~~ 251 (324)
+.+.+.+..++.. +-|.|+||+=.= +.+.. ..+.....++.+++.-.+ -|-+-+++++.++++++. |. +-+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~e-E~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEE-EPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchh-HHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 4555555555543 678999998742 11111 134455555556544222 377888999999999886 63 4455
Q ss_pred eecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 252 QVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 252 Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
-+...- ...+++++.++++|+.++..-
T Consensus 97 sIs~~~---~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 97 SVSAEG---EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred eCCCCC---ccCHHHHHHHHHhCCCEEEEe
Confidence 444321 123478899999999888754
No 188
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.29 E-value=4.8e+02 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCeeecC
Q 020566 116 AMLRYADAGLTTFDMA 131 (324)
Q Consensus 116 ~l~~Al~~Gin~fDTA 131 (324)
..+.|.++|+..++--
T Consensus 157 aA~~a~~aGfDgVeih 172 (338)
T cd02933 157 AARNAIEAGFDGVEIH 172 (338)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 3345567899988863
No 189
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.28 E-value=52 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred CccHHHHHHHHHcCceEEEccccc
Q 020566 261 RPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 261 ~~~~~ll~~~~~~gI~via~spLa 284 (324)
..-.++++.|+++||.+++|-.+.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 334589999999999999998885
No 190
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=29.74 E-value=5e+02 Score=24.77 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=13.9
Q ss_pred cHHHHHHHHHcCceEEE
Q 020566 263 QQKMAELCQLTGVKLIT 279 (324)
Q Consensus 263 ~~~ll~~~~~~gI~via 279 (324)
+.++++++++++|.+-.
T Consensus 235 dp~ll~~l~~~~I~lEv 251 (345)
T cd01321 235 HPLLMDLVKKKNIAIEV 251 (345)
T ss_pred CHHHHHHHHHcCCeEEE
Confidence 35899999999998753
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.64 E-value=3.9e+02 Score=23.50 Aligned_cols=121 Identities=9% Similarity=0.106 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC-CCCCC-hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA-~~YG~-sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (324)
.+.++..++++.-.+.||..|+.. +..+. ..+.+.+..+..+.. .+.... ....+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~-------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-------RLQALC-------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-------EEEEEE-------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-------ccceee-------eehHHHHHHHHHhh
Confidence 567889999999999999999999 43333 223344433332221 121111 12455666666533
Q ss_pred HhhcCCCccceEEeecC----CCCCCC----HHHHHHHHHHHHHcCCccEEEec---CCCHHHHHHHHH
Q 020566 186 RRRMDVPCLDMLQFHWW----DYSNPG----YLDALNHLTDLKEEGKIKTVALT---NFDTERLRIILE 243 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p----~~~~~~----~~e~~~aL~~l~~~G~Ir~iGvS---n~~~~~l~~~~~ 243 (324)
...|.+.+.++.-=++ ..-... ++...+.++.+++.|....+++- .++++.+.++.+
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 4678777776642111 000000 33455566666778877777763 455555555443
No 192
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.47 E-value=3.9e+02 Score=25.69 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=57.0
Q ss_pred EEeecCCCC----------CCCHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 020566 197 LQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (324)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~-G~---Ir~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~yn~l 258 (324)
+-||.|+.+ ...++++++++.++.++ |+ ++++=+- |-+.+.++++.+ .+.+..++-++||+-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 577887643 12378899999988754 32 2244443 555666666554 244567888888874
Q ss_pred CC---Ccc----HHHHHHHHHcCceEEEcccccc
Q 020566 259 DM---RPQ----QKMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 259 ~~---~~~----~~ll~~~~~~gI~via~spLa~ 285 (324)
.. .+. ..+.+..+++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 21 111 2567778889999999887754
No 193
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.29 E-value=3.8e+02 Score=25.97 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHH-HHcC---CccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCccCCCc--------cHHHHHHHH
Q 020566 208 GYLDALNHLTDL-KEEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMRP--------QQKMAELCQ 271 (324)
Q Consensus 208 ~~~e~~~aL~~l-~~~G---~Ir~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~yn~l~~~~--------~~~ll~~~~ 271 (324)
.++++++++.+. .+.| +|+++=+. |.+.+.+.++.+ .+.+..++-++||++.... -..+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 378888888764 4555 24444444 556656666655 2445778888999875321 236778888
Q ss_pred HcCceEEEcccccc
Q 020566 272 LTGVKLITYGTVMG 285 (324)
Q Consensus 272 ~~gI~via~spLa~ 285 (324)
++|+.+......+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 99999999888754
No 194
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=29.17 E-value=2.1e+02 Score=27.93 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCcc-HHHHHHHHHcC-ceEEEccccccC
Q 020566 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 286 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~-~~ll~~~~~~g-I~via~spLa~G 286 (324)
+..+.+-++++....-|...=+-..+.+.++++++...+..+++.+-||.-.-.+ ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 5567777776655555555444555678888877665567778888888644333 37999999998 999999888888
Q ss_pred cCCCCc
Q 020566 287 LLSEKF 292 (324)
Q Consensus 287 ~Ltg~~ 292 (324)
.+....
T Consensus 184 ~~~~pL 189 (386)
T PF01053_consen 184 YNQNPL 189 (386)
T ss_dssp TTC-GG
T ss_pred eeeccC
Confidence 666543
No 195
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.13 E-value=3.7e+02 Score=25.89 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=59.0
Q ss_pred EEeecCCCCC----------CCHHHHHHHHHHHHHcCC----ccEEEe--cCCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 020566 197 LQFHWWDYSN----------PGYLDALNHLTDLKEEGK----IKTVAL--TNFDTERLRIILE--NGIPVVSNQVQHSVV 258 (324)
Q Consensus 197 ~~lH~p~~~~----------~~~~e~~~aL~~l~~~G~----Ir~iGv--Sn~~~~~l~~~~~--~g~~~~~~Q~~yn~l 258 (324)
+-||.++++. ..+++++++++++.+++. ++++=+ -|-+.+.++++.+ .+.+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 5678776431 126889999998877542 334433 4556677777665 245577888899987
Q ss_pred CCC----c-cH---HHHHHHHHcCceEEEcccccc
Q 020566 259 DMR----P-QQ---KMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 259 ~~~----~-~~---~ll~~~~~~gI~via~spLa~ 285 (324)
... + .+ .+.+.++++|+.+......+.
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 521 1 22 566778999999998887653
No 196
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=29.06 E-value=3.4e+02 Score=27.61 Aligned_cols=103 Identities=10% Similarity=0.078 Sum_probs=54.6
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC----------CccEEEecCCCHHHHHHH
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----------KIKTVALTNFDTERLRII 241 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G----------~Ir~iGvSn~~~~~l~~~ 241 (324)
.++.+.- ..+-+.|.++|+|+|++-+ |... .+.+++++.+.+.+ ..+-.+++....+.++.+
T Consensus 102 ~fs~eeK-i~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQK-LEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 3455544 3455569999999888854 4322 22333444444332 133446677777777777
Q ss_pred HHc----CCCeEEEeecCCccC------CCcc------HHHHHHHHHcCceEEEccc
Q 020566 242 LEN----GIPVVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 242 ~~~----g~~~~~~Q~~yn~l~------~~~~------~~ll~~~~~~gI~via~sp 282 (324)
.+. +.+-..+-+.-|.++ ...+ .+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 664 222111222222211 1111 3688899999976555554
No 197
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.83 E-value=5.7e+02 Score=25.15 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHHH-HHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccccC
Q 020566 211 DALNHLTDL-KEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 211 e~~~aL~~l-~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa~G 286 (324)
.++..+... ...| ++-+-+...+++.++++++...+..++....|+.-. ..-+++.++|+++|+.++.=..++.+
T Consensus 115 ~t~~~~~~~~~~~G-v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 115 GTYNLFAHTLPKLG-ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred hHHHHHHHHHHhCC-EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 344444433 3334 344444445677787776544455555555555322 22357889999999988866655533
No 198
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.64 E-value=3.2e+02 Score=22.24 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=41.7
Q ss_pred eeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHHH
Q 020566 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (324)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~ 221 (324)
+..+.|+.|.... ...+..|++.+.++.+... ..-.|++++-.+.....+..+..+.|..+.+
T Consensus 47 RiG~~VsKK~~g~--AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 47 RLGLVIGKKSVKL--AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWK 111 (130)
T ss_pred cEEEEEecccCcc--HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 4456666663222 4567778887777776543 3468999999887665667777777666654
No 199
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.48 E-value=4.5e+02 Score=23.80 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA 131 (324)
.+.++..++++.-.+.|+..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456888899999999999999987
No 200
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.37 E-value=5.4e+02 Score=24.70 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhc---------------------CCCcceeEEEEecc
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTK 165 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~---------------------r~~~~~~~v~i~tK 165 (324)
..+.+...++.++|-+.|+-+|-|-..+...+. |.+...+ .+ .+.++|-
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~ayKIaS~E~~~~plik~iA~~~k-----PiIlSTG 155 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPPAYKIASGEINDLPLIKYIAKKGK-----PIILSTG 155 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCCeEEecCccccChHHHHHHHhcCC-----CEEEEcc
Confidence 456677888999999999999877654432221 1211111 10 1222322
Q ss_pred cCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHH-HHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 020566 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (324)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e-~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (324)
-.+-+.+.++++...++ |.. |+.+||.........++ -+.+|..|.+.= ---||+|.|+..-+..+.
T Consensus 156 ------ma~~~ei~~av~~~r~~-g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 156 ------MATIEEIEEAVAILREN-GNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred ------cccHHHHHHHHHHHHhc-CCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 23457777777654444 433 99999986433222333 345555555443 446999999987555443
No 201
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=28.29 E-value=3e+02 Score=24.92 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=60.5
Q ss_pred HHHHHHhHHHHHhhcCCCccceEEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeEEE
Q 020566 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSN 251 (324)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~--~~l~~~~~~g~~~~~~ 251 (324)
...+...+.+-+++.+++.- -+.+.-.+... .+.+.+...+.+|++.|- .|.+..|.. .-+..+.+ .+|+.+
T Consensus 101 ~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~--l~~d~i 175 (256)
T COG2200 101 SPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR--LPPDIL 175 (256)
T ss_pred CchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh--CCCCeE
Confidence 35566677788888876643 22222222111 124467788999999992 455555543 22333332 466766
Q ss_pred eecCCccCCC--------ccHHHHHHHHHcCceEEEcc
Q 020566 252 QVQHSVVDMR--------PQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 252 Q~~yn~l~~~--------~~~~ll~~~~~~gI~via~s 281 (324)
-+.-+.+..- .-+.++..|++.|+.+++-.
T Consensus 176 KID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 176 KIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred EECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 6655444211 12378999999999999754
No 202
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=28.10 E-value=3.8e+02 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=26.2
Q ss_pred eEEEeecCCccCCCccHHHHHHHHHcCceEEEc
Q 020566 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (324)
Q Consensus 248 ~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~ 280 (324)
+.+.==+||+.|.....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 444455688888777789999999999999864
No 203
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.89 E-value=4.7e+02 Score=23.90 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=55.3
Q ss_pred HHHHHHHHc--CCCeeecCCCCC-ChHHHHHHHHhhhhhcCCCcceeEEEEeccc-CCCCCCCCHHHHHHhHHHH---Hh
Q 020566 115 DAMLRYADA--GLTTFDMADHYG-PAEDLYGIFINRVRRERPPEFLDKVRGLTKW-VPPPVKMTSSIVRESIDVS---RR 187 (324)
Q Consensus 115 ~~l~~Al~~--Gin~fDTA~~YG-~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~-~~~~~~~~~~~i~~~le~S---L~ 187 (324)
+++++|++. |...|.....-. ..+++ -..+++++. .+.+.+-- ...| .+.+...+.+++. +.
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~~~~~~~-~~l~~~~g~--------~vv~m~~~~~g~P--~t~~~~~~~l~~~v~~a~ 148 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEGEKLEVV-LPLVKKYNA--------PVVALTMDDTGIP--KDAEDRLAVAKELVEKAD 148 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCccCHHH-HHHHHHhCC--------CEEEEecCCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 467777777 877776554211 12443 445554322 22222210 0111 1333333433333 34
Q ss_pred hcCCCccceE----EeecCCCCCCCHHHHHHHHHHHHHc--CCccEEEecCCC
Q 020566 188 RMDVPCLDML----QFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFD 234 (324)
Q Consensus 188 rLg~dyiDl~----~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir~iGvSn~~ 234 (324)
+.|++.=|++ +.-. ........++++.++.+++. |.=-.+|+||-+
T Consensus 149 ~~GI~~~~IilDPgi~~~-~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 149 EYGIPPEDIYIDPLVLPL-SAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HcCCCHhHEEEeCCCCcc-cCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 6677633443 2211 11111245678899999988 888899999854
No 204
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=27.88 E-value=4.1e+02 Score=23.13 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeecC----------CCCCC----hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCC
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA----------~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~ 174 (324)
+.++..+..+.+.++|+..||-- ..||. ..+.+-+.++..... . . +.+.-|.... .+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~-~----~~v~vk~r~~---~~ 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-V-P----IPVTVKIRLG---WD 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-c-C----CCEEEEEeec---cC
Confidence 45777788888889999999742 34653 234445555554322 1 1 1122232111 11
Q ss_pred H-HHHHHhHHHHHhhcCCCccceEEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCeEEE
Q 020566 175 S-SIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSN 251 (324)
Q Consensus 175 ~-~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~~~~~~g~~~~~~ 251 (324)
. +...+ +-+.|+..|+| .+.+|...... ......|+.+.++++.-.+.-++.-+. +.+.+.++++.+ ..+.+
T Consensus 136 ~~~~~~~-~~~~l~~~Gvd---~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V 210 (231)
T cd02801 136 DEEETLE-LAKALEDAGAS---ALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT-GVDGV 210 (231)
T ss_pred CchHHHH-HHHHHHHhCCC---EEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc-CCCEE
Confidence 1 12222 23345566764 45556542110 101124566667777666666665554 567777776652 24444
Q ss_pred eec
Q 020566 252 QVQ 254 (324)
Q Consensus 252 Q~~ 254 (324)
++-
T Consensus 211 ~ig 213 (231)
T cd02801 211 MIG 213 (231)
T ss_pred EEc
Confidence 444
No 205
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.73 E-value=3.9e+02 Score=26.29 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCCCcc-HHHHHHHHHcCceEEEccccccC
Q 020566 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~~~-~~ll~~~~~~gI~via~spLa~G 286 (324)
+..+..-++++.++.-|....+-.-+.+.+.+.+.. ..+..++..+=||+..-.+ ..+.+.|+++|+-++.=..++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 445666667776666666666666566555555543 4567788888888765443 37889999999999988888888
Q ss_pred cCCCCcC
Q 020566 287 LLSEKFL 293 (324)
Q Consensus 287 ~Ltg~~~ 293 (324)
.+.....
T Consensus 192 ~~q~PL~ 198 (396)
T COG0626 192 VLQRPLE 198 (396)
T ss_pred cccChhh
Confidence 7766443
No 206
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.70 E-value=5.8e+02 Score=24.83 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=60.8
Q ss_pred eEEeecCCCC----------CCCHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHH--cCC---CeEEEeec
Q 020566 196 MLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQ 254 (324)
Q Consensus 196 l~~lH~p~~~----------~~~~~e~~~aL~~l~-~~G~---Ir~iGvS--n~~~~~l~~~~~--~g~---~~~~~Q~~ 254 (324)
.+-||.++++ ...++++++++.++. +.|+ |.++=+. |-+.+.++++.+ .+. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678988653 123788999988887 4464 4555555 555666665554 234 57899999
Q ss_pred CCccCC----Cc----cHHHHHHHHHcCceEEEcccccc
Q 020566 255 HSVVDM----RP----QQKMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 255 yn~l~~----~~----~~~ll~~~~~~gI~via~spLa~ 285 (324)
||++.. .+ -..+.+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 999642 11 12678888999999999888754
No 207
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=27.59 E-value=21 Score=34.44 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCC--hH---HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGP--AE---DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE---~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (324)
+.++..+.++.|.+.|++.+=|+-+... .+ ..+.+.++..... ...+.--+.|.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~-------~~~v~~Disp~-------------- 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL-------GMEVIADISPK-------------- 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHC-------T-EEEEEE-CC--------------
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC-------CCEEEEECCHH--------------
Confidence 5788899999999999999988876632 11 1123333332222 12222222221
Q ss_pred HHHhhcCCCccceEEeec-------CCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCC
Q 020566 184 VSRRRMDVPCLDMLQFHW-------WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS 256 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~-------p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn 256 (324)
+|+.||.++-|+-.++. .|.... . +.+.+|-++|.--.+=.|+.+.+.+.++.+.+..+.-+..-+|
T Consensus 71 -~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~-~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HN 144 (357)
T PF05913_consen 71 -VLKKLGISYDDLSFFKELGIDGLRLDYGFS-G----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHN 144 (357)
T ss_dssp -HHHTTT-BTTBTHHHHHHT-SEEEESSS-S-C----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE--
T ss_pred -HHHHcCCCHHHHHHHHHcCCCEEEECCCCC-H----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEec
Confidence 23334433323222221 222211 1 2234454557766777788888899998876643332222233
Q ss_pred ccCCCcc--------HHHHHHHHHcCceEEEccccccCcCCCC
Q 020566 257 VVDMRPQ--------QKMAELCQLTGVKLITYGTVMGGLLSEK 291 (324)
Q Consensus 257 ~l~~~~~--------~~ll~~~~~~gI~via~spLa~G~Ltg~ 291 (324)
. ++.++ .+.=++.++.||.+.|+-|-. +..-|.
T Consensus 145 f-YPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~-~~~rGP 185 (357)
T PF05913_consen 145 F-YPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGD-ENKRGP 185 (357)
T ss_dssp --B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--S-SS-BTT
T ss_pred c-cCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCC-CcccCC
Confidence 2 22332 245567789999999998865 334443
No 208
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=27.09 E-value=2e+02 Score=26.58 Aligned_cols=67 Identities=7% Similarity=0.047 Sum_probs=47.1
Q ss_pred HHHHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEcccc
Q 020566 216 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 216 L~~l~~~G~Ir~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~spL 283 (324)
|.+..++|+. .+| +..-++...+.+...|+.+.++=.|+++++...-..++..++..|+..+..-|-
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 3444555765 344 344455555555567888999999999987665667899999999988877653
No 209
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.97 E-value=4.5e+02 Score=23.32 Aligned_cols=162 Identities=11% Similarity=-0.010 Sum_probs=74.7
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeE--------EE
Q 020566 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDK--------VR 161 (324)
Q Consensus 90 ~vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~--------v~ 161 (324)
.+|.++-|..+ +.+++.+ .++.|...+..+...-..-..+.++.+.++.++. .+-.+ ..
T Consensus 71 ~~pv~~~GGI~--------s~~d~~~----~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i-~~~ld~k~~~~~~~~ 137 (243)
T cd04731 71 FIPLTVGGGIR--------SLEDARR----LLRAGADKVSINSAAVENPELIREIAKRFGSQCV-VVSIDAKRRGDGGYE 137 (243)
T ss_pred CCCEEEeCCCC--------CHHHHHH----HHHcCCceEEECchhhhChHHHHHHHHHcCCCCE-EEEEEeeecCCCceE
Confidence 46666555432 2344444 4446888777665443233445666665533321 11111 22
Q ss_pred EecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHH
Q 020566 162 GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRI 240 (324)
Q Consensus 162 i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~ 240 (324)
+.++.|......+.. .+-+.++.+|.| .+.+|..+.......--|+.+.++++.-.+.-|..-. .+++.+.+
T Consensus 138 v~~~~~~~~~~~~~~----~~~~~l~~~G~d---~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~ 210 (243)
T cd04731 138 VYTHGGRKPTGLDAV----EWAKEVEELGAG---EILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVE 210 (243)
T ss_pred EEEcCCceecCCCHH----HHHHHHHHCCCC---EEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 344434321112221 222444566655 4555554321110001355556666665566665544 46778888
Q ss_pred HHHc-CCCeEEEeecCCccCC-CccHHHHHHHHHc
Q 020566 241 ILEN-GIPVVSNQVQHSVVDM-RPQQKMAELCQLT 273 (324)
Q Consensus 241 ~~~~-g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~ 273 (324)
+++. |. +.+.+---+.+. ..-.+++++|+++
T Consensus 211 ~l~~~g~--dgv~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 211 AFEEGGA--DAALAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred HHHhCCC--CEEEEeHHHHcCCCCHHHHHHHHhhC
Confidence 7775 43 333332111111 1233677777764
No 210
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=26.88 E-value=6.6e+02 Score=25.25 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHH----cCCccEEEec--CCCHHHHHHHHHcC
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 245 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~----~G~Ir~iGvS--n~~~~~l~~~~~~g 245 (324)
.++.+.|.+.++. +++.|...+-|.. .-++....++-..+.++.+++ .|.++.|+|+ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lvs--Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVA--GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEe--CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 3578888888875 5778877765542 222122236666666666665 5777777664 56778899998888
Q ss_pred CC-eEEEeecCCc-----cCC-----Ccc--HHHHHHHHHcCceEEEcccc
Q 020566 246 IP-VVSNQVQHSV-----VDM-----RPQ--QKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 246 ~~-~~~~Q~~yn~-----l~~-----~~~--~~ll~~~~~~gI~via~spL 283 (324)
+. ..++|--||. ++. ..+ -+.++.+++.||.-+....|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 63 5556655542 111 112 27888999999875544444
No 211
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.87 E-value=2.4e+02 Score=20.82 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCC-CHHHHHHHHHcCCCeEEEeecC
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNF-DTERLRIILENGIPVVSNQVQH 255 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~-~~~~l~~~~~~g~~~~~~Q~~y 255 (324)
.++.++....|++++-...+... ..+.++++++.+ .++-|-+|+. +.....++.+.|. .+++.-++
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~----~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~-~~~l~kp~ 102 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGD----GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGA-DDYLSKPF 102 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSB----HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTE-SEEEESSS
T ss_pred HHHHhcccCceEEEEEeeecccc----ccccccccccccccccEEEecCCCCHHHHHHHHHCCC-CEEEECCC
Confidence 33344444599999976544433 455566777766 7888888864 4566777777663 33433333
No 212
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=26.32 E-value=5.9e+02 Score=25.14 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcCCCc-cceEEeecCCCCCC--
Q 020566 131 ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPC-LDMLQFHWWDYSNP-- 207 (324)
Q Consensus 131 A~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dy-iDl~~lH~p~~~~~-- 207 (324)
.-+||..| -|-++|++......+ ..-++|.+-. ..+-+-+.++...+++..++ +.++.+|.|+....
T Consensus 96 d~V~Gg~~-~L~~aI~~~~~~~~p--~~~I~V~~tC-------~~~liGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~ 165 (443)
T TIGR01862 96 DIVFGGEK-KLKKLIHEAFTEFPL--IKAISVYATC-------PTGLIGDDIEAVAKEVSKEIGKDVVAVNCPGFAGVSQ 165 (443)
T ss_pred ceeeCcHH-HHHHHHHHHHHhCCc--cceEEEECCC-------hHHHhccCHHHHHHHHHHhcCCCEEEEecCCccCCcc
Confidence 34567644 468888775443221 0134444432 22333333333333332111 68899998875532
Q ss_pred --CHHHHHHH-HHHHH--------HcCCccEEEecCC--CHHHHHHHHHc-CCCeE
Q 020566 208 --GYLDALNH-LTDLK--------EEGKIKTVALTNF--DTERLRIILEN-GIPVV 249 (324)
Q Consensus 208 --~~~e~~~a-L~~l~--------~~G~Ir~iGvSn~--~~~~l~~~~~~-g~~~~ 249 (324)
++..+.++ +++++ +.++|--||-.++ +.+.+.++++. |+++.
T Consensus 166 ~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 166 SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 23334443 33443 2466878885554 33466666653 65443
No 213
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.24 E-value=3.1e+02 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHHHHHHHc-CCccEEEecCCCHHHHHHHHHcCCCeEEEeec
Q 020566 213 LNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (324)
Q Consensus 213 ~~aL~~l~~~-G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (324)
-+++++.++. |.-+.||+|.++.+++.++.+.| +|++++.
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~g--aDyI~lD 215 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETETEEQVREAVAAG--ADIIMFD 215 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC--CCEEEEC
Confidence 3344555543 32345899998888888887654 5666663
No 214
>PRK07329 hypothetical protein; Provisional
Probab=26.18 E-value=4.8e+02 Score=23.39 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCC--------CCCHHHHH----HHHHHHHHcC-CccEEEecC----------CC--
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDAL----NHLTDLKEEG-KIKTVALTN----------FD-- 234 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~--------~~~~~e~~----~aL~~l~~~G-~Ir~iGvSn----------~~-- 234 (324)
..+++-|.+...||+ +.-+|+.+.. ..+.++.+ +.+.++++.+ .+..+|==. .+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445555666778888 7888985321 11234444 6778888876 666555111 11
Q ss_pred --HHH----HHHHHHcCCCeEEEeecCC-ccCCCccHHHHHHHHHcCceEEEcc
Q 020566 235 --TER----LRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 235 --~~~----l~~~~~~g~~~~~~Q~~yn-~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
... ++.+.+.+..+.+|--.+. ......-..+++.|++.|+..+..+
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~g 215 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIG 215 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEec
Confidence 112 2233345666776654321 1111112467889999987644444
No 215
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.03 E-value=2.3e+02 Score=22.20 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccc
Q 020566 231 TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 231 Sn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~sp 282 (324)
+.-+++.+..+.... +|+++-+-----.+....++.++++++||++..+..
T Consensus 37 ~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 334555555555433 344333221111123445788888888888877654
No 216
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=26.01 E-value=5.5e+02 Score=24.05 Aligned_cols=154 Identities=7% Similarity=0.028 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCC-hH--HHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHh
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGP-AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~-sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (324)
++..+.++...+.|++.|=.--.-.. .+ +.+ +++++.-.+ ++.+.--. + ..++.+...+-+ +.|+
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v-~air~~~g~-------~~~l~vDa-N--~~w~~~~A~~~~-~~l~ 187 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIF-EQLLERLPA-------GAKLRLDA-N--GGLSLEEAKRWL-QLCD 187 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHH-HHHHHhcCC-------CCEEEEEC-C--CCCCHHHHHHHH-HHHh
Confidence 44556667778899997743210011 11 222 233321111 12222221 1 145666544432 3334
Q ss_pred hcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCccHHH
Q 020566 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKM 266 (324)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~~~~l 266 (324)
.| ...++.++..|-+.. .++.+.++.+.-.+ -+.|=|-++...+..+++.+ ..+++|+.....- --.++
T Consensus 188 ~l--~~~~i~~iEqP~~~~-----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~-a~d~v~ik~~k~G--Gi~~~ 257 (320)
T PRK02714 188 RR--LSGKIEFIEQPLPPD-----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG-WRGIFVIKPAIAG--SPSRL 257 (320)
T ss_pred hc--cCCCccEEECCCCcc-----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC-CCCEEEEcchhcC--CHHHH
Confidence 43 235777888775322 35666777765543 36677888999999988875 3777888776532 23478
Q ss_pred HHHHHHcCceEEEccccccC
Q 020566 267 AELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 267 l~~~~~~gI~via~spLa~G 286 (324)
++.|+.+||.++..+.+.+|
T Consensus 258 ~~~a~~~gi~~~~~~~~es~ 277 (320)
T PRK02714 258 RQFCQQHPLDAVFSSVFETA 277 (320)
T ss_pred HHHHHHhCCCEEEEechhhH
Confidence 89999999999987665555
No 217
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.95 E-value=5.8e+02 Score=24.26 Aligned_cols=150 Identities=14% Similarity=0.038 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCh--HHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (324)
+.++..+-+..+++.|++.|=.--.-... .+.+ +++++.-.+ ++.+.--. +. .++.+...+-+ +.|
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~d~~~v-~~vRe~~G~-------~~~l~vDa-N~--~~~~~~A~~~~-~~l 205 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGRDPRRDPDRV-AAARRAIGP-------DAELFVDA-NG--AYSRKQALALA-RAF 205 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCHHHHHHHH-HHHHHHcCC-------CCeEEEEC-CC--CCCHHHHHHHH-HHH
Confidence 45666677777888999987432110111 1222 233321111 12222221 11 34655433332 233
Q ss_pred hhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc--CCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-Cc
Q 020566 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RP 262 (324)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~ 262 (324)
+. +++.++..|-+ .+-++.+.+++++ -.|. +.|=|.++...+.++++.+ -.+++|+...-.-. ..
T Consensus 206 ~~-----~~~~~~EeP~~-----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~-a~div~~d~~~~GGit~ 274 (352)
T cd03328 206 AD-----EGVTWFEEPVS-----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH-AVDVLQADVTRCGGVTG 274 (352)
T ss_pred HH-----hCcchhhCCCC-----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC-CCCEEecCccccCCHHH
Confidence 33 35555555532 2346777888887 3332 5677888999999999876 38888988764321 12
Q ss_pred cHHHHHHHHHcCceEEEcc
Q 020566 263 QQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 263 ~~~ll~~~~~~gI~via~s 281 (324)
-.++.+.|+.+|+.++.+.
T Consensus 275 ~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 275 FLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHHcCCeeccCc
Confidence 3489999999999999875
No 218
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=25.93 E-value=2.6e+02 Score=27.38 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcC-CccEEEecCC---CHHHHHHHHHcCCCeEEEeecCCcc-CCCccHHHHHHHHHcCceEEEcccc
Q 020566 209 YLDALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVV-DMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 209 ~~e~~~aL~~l~~~G-~Ir~iGvSn~---~~~~l~~~~~~g~~~~~~Q~~yn~l-~~~~~~~ll~~~~~~gI~via~spL 283 (324)
...+++.+..|..+| .|.++.|-+. ++++++++++......++|.--|-. .-.+-.++-+.|+++||.+..=...
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhh
Confidence 455777777776667 5777777654 4567777765443333333322221 0134457888888888777766666
Q ss_pred ccCcCC
Q 020566 284 MGGLLS 289 (324)
Q Consensus 284 a~G~Lt 289 (324)
+-|.+.
T Consensus 181 a~Gkip 186 (386)
T COG1104 181 AVGKIP 186 (386)
T ss_pred hcCcee
Confidence 555443
No 219
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=25.22 E-value=2.5e+02 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=19.2
Q ss_pred ecCCCHHHHHHHHHcCCCeEEEeec
Q 020566 230 LTNFDTERLRIILENGIPVVSNQVQ 254 (324)
Q Consensus 230 vSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (324)
|.+|+.+.+.++.+.|+.|+.+|+-
T Consensus 108 v~~yT~~vl~~l~~~G~~pd~VQVG 132 (332)
T PF07745_consen 108 VYDYTKDVLQALKAAGVTPDMVQVG 132 (332)
T ss_dssp HHHHHHHHHHHHHHTT--ESEEEES
T ss_pred HHHHHHHHHHHHHHCCCCccEEEeC
Confidence 6678888888888889999999974
No 220
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=25.18 E-value=5.9e+02 Score=24.13 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccccCcC
Q 020566 233 FDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 233 ~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
.+.+.++++++...+..++....|+.-. .+-+++.+.|+++|+.++.=...+.|.+
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 3567777776544456666666776422 2344899999999999998887776655
No 221
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=25.10 E-value=3.2e+02 Score=21.06 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=42.4
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHH
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (324)
.+..+.|+-|++. ...+..+++.+.+...... ....|++++-.+.....+..+..+.|++|.
T Consensus 41 ~RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 3456667777543 4577777777777776543 336899999888776666777777777653
No 222
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.97 E-value=1.9e+02 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHcCceEEE
Q 020566 262 PQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 262 ~~~~ll~~~~~~gI~via 279 (324)
.+++++++|+++|+.++.
T Consensus 90 ~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIG 107 (116)
T ss_dssp --HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHcCCEEEe
Confidence 355889999999998874
No 223
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=24.75 E-value=3.2e+02 Score=25.23 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCccceEEeecCC-------CCCCCHHHHHHHHHH----HHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCcc
Q 020566 190 DVPCLDMLQFHWWD-------YSNPGYLDALNHLTD----LKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (324)
Q Consensus 190 g~dyiDl~~lH~p~-------~~~~~~~e~~~aL~~----l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l 258 (324)
.++.||.+++---| +...+..+..+++++ .++.|| .+|+...+++...++++.|..+.+......++
T Consensus 166 ~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 166 DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 45788888775311 111113344444444 567888 46877778899999999998888887777665
No 224
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=24.56 E-value=1.3e+02 Score=29.50 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=42.2
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHHcC
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENG 245 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~~g 245 (324)
..+.+-|+.. -.|++.+|.-.. -=++||+|+++|.+..+ |+....+++++.+.+.|
T Consensus 201 ~~~~~~Le~~---G~Ev~VFHAtG~-------GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~G 270 (403)
T PF06792_consen 201 DAIRERLEEE---GYEVLVFHATGT-------GGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAG 270 (403)
T ss_pred HHHHHHHHhc---CCeEEEEcCCCC-------chHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcC
Confidence 3344444444 468999997542 33578999999998865 56667889999998888
Q ss_pred CCeE
Q 020566 246 IPVV 249 (324)
Q Consensus 246 ~~~~ 249 (324)
+|-.
T Consensus 271 IP~V 274 (403)
T PF06792_consen 271 IPQV 274 (403)
T ss_pred CCEE
Confidence 7533
No 225
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=24.52 E-value=6e+02 Score=23.95 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHH-cCCCeeecCCCCCC----hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhH
Q 020566 108 IDRDDAVDAMLRYAD-AGLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~-~Gin~fDTA~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (324)
...++..+++++.-+ .|++.+--+- |. .+..|-+.+.....- .....+.|.|+.. ...++.|.+.+
T Consensus 125 ~~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i---~~~~~iri~tr~~----~~~p~rit~el 195 (321)
T TIGR03821 125 PNKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQI---PHLKRLRIHTRLP----VVIPDRITSGL 195 (321)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhC---CCCcEEEEecCcc----eeeHHHhhHHH
Confidence 344566666665543 4787664443 42 333345555433221 1223566777643 22445666667
Q ss_pred HHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHH
Q 020566 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE 243 (324)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-------n~~~~~l~~~~~ 243 (324)
-+.|++.|.+++ ..+|-..+... .+++.++++.|++.|.. +++. |.+.+.+.++.+
T Consensus 196 ~~~L~~~~~~~~--~~~h~dh~~Ei-~d~~~~ai~~L~~~Gi~--v~~qtvllkgiNDn~~~l~~L~~ 258 (321)
T TIGR03821 196 CDLLANSRLQTV--LVVHINHANEI-DAEVADALAKLRNAGIT--LLNQSVLLRGVNDNADTLAALSE 258 (321)
T ss_pred HHHHHhcCCcEE--EEeeCCChHhC-cHHHHHHHHHHHHcCCE--EEecceeeCCCCCCHHHHHHHHH
Confidence 677777765432 24575433322 46788899999999963 2322 346666666554
No 226
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=24.41 E-value=6.6e+02 Score=24.35 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHcCCCeEEEeecCCccCCCc-cHHHHHHHHHcCceEEEccccccCc
Q 020566 232 NFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 287 (324)
Q Consensus 232 n~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~-~~~ll~~~~~~gI~via~spLa~G~ 287 (324)
..+++.++++++...+..++..+.|+.-... -+.+.+.|+++|+.++.=...+.+.
T Consensus 136 ~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 136 TGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence 3467777777654445666666677643222 3478899999999888766665443
No 227
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=24.27 E-value=1.4e+02 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.0
Q ss_pred CCccHHHHHHHHHcCceEEEcccc
Q 020566 260 MRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 260 ~~~~~~ll~~~~~~gI~via~spL 283 (324)
...+..+++++++.|+.++.|++=
T Consensus 44 K~~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 44 KADEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp SS--HHHHHHHHHCTSEEEEE-HH
T ss_pred cCCCHHHHHHHHHhCCCeEEECHH
Confidence 344668999999999999999764
No 228
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=24.18 E-value=8.1e+02 Score=25.32 Aligned_cols=146 Identities=13% Similarity=0.066 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHcCCCee-ecCCCCCChHHHHHHHH-hhhhhcCCCcceeEEEEec--------ccCCCCCCCCHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFI-NRVRRERPPEFLDKVRGLT--------KWVPPPVKMTSSI 177 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~f-DTA~~YG~sE~~lG~al-~~~~r~r~~~~~~~v~i~t--------K~~~~~~~~~~~~ 177 (324)
.+.++-.+-+..|++.|-..+ |-+. .|+-.+ +-+|+ +..+ +-|.| |......+++.+.
T Consensus 229 s~ieeEveK~~~A~~~GADtvMDLST-Ggdi~~-~R~~Il~~sp----------vPvGTVPiYqA~~~~~~~~~~lt~e~ 296 (607)
T PRK09284 229 SSIEEEVEKMVWATRWGADTVMDLST-GKNIHE-TREWILRNSP----------VPIGTVPIYQALEKVNGVAEDLTWEI 296 (607)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC-CCCHHH-HHHHHHHcCC----------CCccCccHHHHHHHhcCChhhCCHHH
Confidence 355666677889999998644 6554 344333 24444 3222 22232 2212223678888
Q ss_pred HHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 020566 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (324)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~ 257 (324)
+.+.+++..+ +-+|.+-||.-- .++.++.++ + |..|+-+-.-.-+..++... -.=|+
T Consensus 297 ~~d~ieeQAe----qGVDf~TIHaGv--------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h-------~kENp 353 (607)
T PRK09284 297 FRDTLIEQAE----QGVDYFTIHAGV--------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH-------HKENF 353 (607)
T ss_pred HHHHHHHHHH----hCCCEEEEChhh--------HHHHHHHHh--C--cccCcccCCHHHHHHHHHHc-------CCcCc
Confidence 8888888776 357888999641 334444444 3 66777666655555544321 11233
Q ss_pred cCCCccHHHHHHHHHcCceEEEccccccCcCCCCcC
Q 020566 258 VDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFL 293 (324)
Q Consensus 258 l~~~~~~~ll~~~~~~gI~via~spLa~G~Ltg~~~ 293 (324)
++ ..-+++++.|++++|.+- |+-|+=.|...
T Consensus 354 lY-e~FD~ileI~k~YDVtlS----LGDGLRPG~ia 384 (607)
T PRK09284 354 LY-THFEEICEIMAAYDVSFS----LGDGLRPGSIA 384 (607)
T ss_pred HH-HHHHHHHHHHHHhCeeee----ccCCcCCCccc
Confidence 32 223378888888887763 45555444443
No 229
>PRK12928 lipoyl synthase; Provisional
Probab=24.01 E-value=5.9e+02 Score=23.68 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCC-----ChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHh
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYG-----PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG-----~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (324)
..+.++..+.++.+.+.|++++--..... ..-..+-+.++....... .+++.+....-...
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p-~~~I~~ltp~~~~~------------- 151 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNP-GTGIEVLTPDFWGG------------- 151 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCC-CCEEEEeccccccC-------------
Q ss_pred HHHHHhhcCCCccceEEe---------ecCCCCCCCHHHHHHHHHHHHHcC---CccE---EEecCCCHHHHHHHHH--c
Q 020566 182 IDVSRRRMDVPCLDMLQF---------HWWDYSNPGYLDALNHLTDLKEEG---KIKT---VALTNFDTERLRIILE--N 244 (324)
Q Consensus 182 le~SL~rLg~dyiDl~~l---------H~p~~~~~~~~e~~~aL~~l~~~G---~Ir~---iGvSn~~~~~l~~~~~--~ 244 (324)
.++.|+.|.-...|++.. ....+... .++.++.++.+++.| .++. +|+ +=+.+++.+.++ .
T Consensus 152 ~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t-~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lr 229 (290)
T PRK12928 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGAD-YQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLR 229 (290)
T ss_pred CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCC-HHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHH
Q ss_pred CCCeEEEee-cCCc-----------cCCCccHHHHHHHHHcCceEEEcccc
Q 020566 245 GIPVVSNQV-QHSV-----------VDMRPQQKMAELCQLTGVKLITYGTV 283 (324)
Q Consensus 245 g~~~~~~Q~-~yn~-----------l~~~~~~~ll~~~~~~gI~via~spL 283 (324)
...++.+.+ +|.. .....-+.+.+.+.+.|...++-+||
T Consensus 230 el~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 230 AVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred hcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 230
>TIGR00035 asp_race aspartate racemase.
Probab=23.74 E-value=4.4e+02 Score=23.25 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=41.8
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCC----------CCC-HHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~----------~~~-~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l 238 (324)
+-+.+++-++..=.+.+.++++++.+++|+.. .+. .....+.++.|.+. .+..|-++.++...+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHH
Confidence 34556666666667788899999999987531 111 23355555666554 478999988877653
No 231
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.72 E-value=4.5e+02 Score=23.44 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCC---ChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYG---PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG---~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (324)
.++++..++.+.+.+.|..|+=|+..|+ .+.+.+....+.. ..+ ..++.+.- -.+.++..+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~-----~~IKasGG------Irt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPR-----VGVKASGG------IRTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCC-----ceEEeeCC------cCCHHHHHHHHHc
Confidence 4567788888899999999999988873 2333333332222 121 12333221 2255666666666
Q ss_pred HHhhcCCC
Q 020566 185 SRRRMDVP 192 (324)
Q Consensus 185 SL~rLg~d 192 (324)
--.|+|+.
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 55666664
No 232
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.70 E-value=2.4e+02 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeec
Q 020566 213 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (324)
Q Consensus 213 ~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (324)
-++++++++...-+.|||+.++.+++.++.+.| .+++++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~g--aD~I~ld 210 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAG--ADILQLD 210 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC--CCEEEEC
Confidence 344555554432246888888888888877655 4555553
No 233
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.64 E-value=2.9e+02 Score=25.03 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=55.7
Q ss_pred cceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHH
Q 020566 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 272 (324)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~ 272 (324)
.++.++..|-+ .+-++.+.++. .+.=-+.|=|-++...+.++++.+ ..+++|+.....-. ..-..+.+.|+.
T Consensus 153 ~~i~~iEqP~~-----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~-~~d~v~~k~~~~GGit~~~~i~~~a~~ 225 (263)
T cd03320 153 GRIEYIEQPLP-----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAG-ALGALVLKPALLGGPRALLELAEEARA 225 (263)
T ss_pred cCCceEECCCC-----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcC-CCCEEEECchhcCCHHHHHHHHHHHHH
Confidence 45666666643 23455666666 333336666777778888888765 37888888664321 123489999999
Q ss_pred cCceEEEccccccC
Q 020566 273 TGVKLITYGTVMGG 286 (324)
Q Consensus 273 ~gI~via~spLa~G 286 (324)
+|+.++..+-+.++
T Consensus 226 ~gi~~~~~~~~es~ 239 (263)
T cd03320 226 RGIPAVVSSALESS 239 (263)
T ss_pred cCCCEEEEcchhhH
Confidence 99999886544444
No 234
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=23.53 E-value=8.2e+02 Score=26.15 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC
Q 020566 111 DDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD 190 (324)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg 190 (324)
|-+..+++.+-+.|++.+ ..|....+. . +.+.+.+ +-++..|..+. -...-.+++..+--+
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYseqD~~-s--MHRqKAD-------EaY~iGk~l~P------V~AYL~ideii~iak 103 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSEQDRL-S--MHRQKAD-------EAYLIGKGLPP------VGAYLAIDEIISIAK 103 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEeccchh-h--hhhhccc-------cceecccCCCc------hhhhhhHHHHHHHHH
Confidence 678899999999999866 466543321 1 2211111 34445553321 111112222222222
Q ss_pred CCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH----------HHHcCCCeEEEeecCCccCC
Q 020566 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI----------ILENGIPVVSNQVQHSVVDM 260 (324)
Q Consensus 191 ~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~----------~~~~g~~~~~~Q~~yn~l~~ 260 (324)
-..+|.+ | |.+.. +.|--+.-+...+.| |+.||=| ++.++. +++.|+|. ++-.+.--
T Consensus 104 ~~~vdav--H-PGYGF--LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVpv----VPGTpgPi 170 (1176)
T KOG0369|consen 104 KHNVDAV--H-PGYGF--LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVPV----VPGTPGPI 170 (1176)
T ss_pred HcCCCee--c-CCccc--cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCCc----cCCCCCCc
Confidence 2334543 4 32221 122222223444455 6899976 444432 22345432 11111111
Q ss_pred CccHHHHHHHHHcCceEEEccccccC
Q 020566 261 RPQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 261 ~~~~~ll~~~~~~gI~via~spLa~G 286 (324)
..-++-+++|++.|.++|--..+++|
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccCC
Confidence 12348999999999999999998876
No 235
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=23.24 E-value=5.3e+02 Score=22.85 Aligned_cols=135 Identities=12% Similarity=0.007 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHHHHh
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (324)
.+.++..++.+.|.+.|+.-+-..+.|= ....+.|++ . .+.++|-.+-.....+.+.-...+++. -
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v---~~a~~~l~~---~-------~v~v~tVigFP~G~~~~~~K~~E~~~A-v 80 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYV---PLAKELLKG---T-------EVRICTVVGFPLGASTTDVKLYETKEA-I 80 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHH---HHHHHHcCC---C-------CCeEEEEeCCCCCCCcHHHHHHHHHHH-H
Confidence 4678999999999999887776555432 222333431 1 344444432211122333333444444 4
Q ss_pred hcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc--CC-ccEE-EecCCCHHHHHHHHHc--CCCeEEEeec--CCc
Q 020566 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GK-IKTV-ALTNFDTERLRIILEN--GIPVVSNQVQ--HSV 257 (324)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~-Ir~i-GvSn~~~~~l~~~~~~--g~~~~~~Q~~--yn~ 257 (324)
++|.|-||+++--..-.+ .+.....+.+.+.++. |+ ++-| -.+-.+.+++..+.+. ....+++... |.+
T Consensus 81 ~~GAdEiDvv~n~g~l~~-g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 81 KYGADEVDMVINIGALKD-GNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred HcCCCEEEeecchHhhhC-CcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 579999999865432111 2256677777777764 43 2222 1122344454444331 1235555655 654
No 236
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=23.24 E-value=3.8e+02 Score=21.18 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=42.5
Q ss_pred ceeEEEEecccCCCCCCCCHHHHHHhHHHHHhhcC--CCccceEEeecCCCCCCCHHHHHHHHHHHHH
Q 020566 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (324)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~ 221 (324)
.+..+.|+-|.... ...+..+++-+.+..+.+. ....|++++-.+.....+..+..+.|..+.+
T Consensus 45 ~R~G~~VsKK~~g~--AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 45 PRLGLTVAKKNVKR--AHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWR 110 (114)
T ss_pred cEEEEEEEcccCcc--hhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 34456666663322 4567777777777776543 2457999998887666667788877777654
No 237
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.06 E-value=5.3e+02 Score=22.77 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeec
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDM 130 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDT 130 (324)
.|.+++.++++.+++.|+.-.|+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 36789999999999998765543
No 238
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=23.02 E-value=3.9e+02 Score=26.70 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHH-----c-CCC-eEEEeecCCccCCCccHHHHHHHHHcCceEEEcc
Q 020566 217 TDLKEEGKIKTVALTNFDTERLRIILE-----N-GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~-----~-g~~-~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~s 281 (324)
..+-+.|-...+|....+++++++.++ . +.+ |-+|-+ .++-+...+.++++.|.+++|.++..+
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 456678999999999999999887664 1 224 777665 333223335579999999999988765
No 239
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.73 E-value=4.2e+02 Score=24.62 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred HhhcCCCccceEEeecCCCCCCCHHHH-----HHHHHHHHHcCCccEEEecCCCHH----HHHHHHHc--CCCeEEEeec
Q 020566 186 RRRMDVPCLDMLQFHWWDYSNPGYLDA-----LNHLTDLKEEGKIKTVALTNFDTE----RLRIILEN--GIPVVSNQVQ 254 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~-----~~aL~~l~~~G~Ir~iGvSn~~~~----~l~~~~~~--g~~~~~~Q~~ 254 (324)
++-++-.++|+..+..+..... ..+. -+.+.++..+--=|++|+.+.++. ..+++.+. ...+.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~-~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI-IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL- 132 (293)
T ss_pred HhhhcccccceEEeeccccccc-hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe-
Confidence 7778888999998884111111 2222 246778888888899999988765 23333322 112333333
Q ss_pred CCccCC----Ccc--HHHHHHHHHcCceEEEccccccC
Q 020566 255 HSVVDM----RPQ--QKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 255 yn~l~~----~~~--~~ll~~~~~~gI~via~spLa~G 286 (324)
++... +.+ ..+.+.|.++|+.++-+.....+
T Consensus 133 -~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 -HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred -cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 22211 111 36999999999999986655433
No 240
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=22.69 E-value=6.6e+02 Score=24.14 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=25.8
Q ss_pred CHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccccC
Q 020566 234 DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 234 ~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa~G 286 (324)
+.+.++++++...+..+++.+-|+.-. .+-+++.+.|+++|+.++.=...+.+
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 344444444322333344444444211 12336777777777777655555443
No 241
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=22.68 E-value=4.5e+02 Score=21.84 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHc-CCCeEE
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~~-g~~~~~ 250 (324)
..--.+++.|.+-|+..|.+.+|+= ++ ..++.+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-..
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G----~~--~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA~ 82 (141)
T PRK12613 9 AHGNALKELIKSFLQEEGYDIIDVT----DI--NSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAAE 82 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcC----CC--CCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEE
Confidence 3456789999999999999888874 22 12477788888899999997 7899998887666666553 443333
Q ss_pred EeecCCccCCCccHHHHHHHH-HcCceEEEcc
Q 020566 251 NQVQHSVVDMRPQQKMAELCQ-LTGVKLITYG 281 (324)
Q Consensus 251 ~Q~~yn~l~~~~~~~ll~~~~-~~gI~via~s 281 (324)
+.-+ .....++ .+|..+++.+
T Consensus 83 ~~d~----------~~A~~ar~hNnaNVl~lG 104 (141)
T PRK12613 83 VSDE----------RSAYMTRGHNNARMITMG 104 (141)
T ss_pred ECCH----------HHHHHHHHHcCCcEEEEC
Confidence 2222 3334454 4467777654
No 242
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=22.67 E-value=2.5e+02 Score=26.39 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=51.9
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCC---CCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHH--HHHHcCCCeEE
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDY---SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR--IILENGIPVVS 250 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~---~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~--~~~~~g~~~~~ 250 (324)
+.+++.+.+-+++.|+|.+=++..-.-++ ..+....++++|++..+++.-. -++..+- .+++.|.+| +
T Consensus 132 e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f-v 204 (295)
T PF07994_consen 132 EQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF-V 204 (295)
T ss_dssp HHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE-E
T ss_pred HHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe-E
Confidence 57788999999999998555554433222 1112335788888888876642 1233332 333455433 2
Q ss_pred EeecCCccCCCccHHHHHHHHHcCceEEE
Q 020566 251 NQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 251 ~Q~~yn~l~~~~~~~ll~~~~~~gI~via 279 (324)
|-.+-+. .....+.+.++++|+.+..
T Consensus 205 N~tP~~~---a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 205 NGTPSNI---ADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp E-SSSTT---TTSHHHHHHHHHHTEEEEE
T ss_pred eccCccc---cCCHHHHHHHHHcCCCeec
Confidence 3222222 2234788888888888774
No 243
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.67 E-value=4.1e+02 Score=22.80 Aligned_cols=101 Identities=22% Similarity=0.241 Sum_probs=57.3
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeEEEe
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQ 252 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~--~~l~~~~~~g~~~~~~Q 252 (324)
......+...+++.+..- +-+.+--.+.. ........+.++.|++.|- .+.+.+|+. ..+..+.. .+|+.+-
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iK 173 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLK 173 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEE
Confidence 345566777777777653 23333322211 1123445588999999996 356666543 23333322 3566666
Q ss_pred ecCCccCCC--------ccHHHHHHHHHcCceEEEcc
Q 020566 253 VQHSVVDMR--------PQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 253 ~~yn~l~~~--------~~~~ll~~~~~~gI~via~s 281 (324)
+..+++... .-+.++..|+..|+.+++-.
T Consensus 174 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 174 IDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred ECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 665444221 12367888999999988643
No 244
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.64 E-value=1.2e+02 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhhhc
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE 151 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~ 151 (324)
..+.+.-.+++...++.|.+.-+.|..||-++..|..|++.+...
T Consensus 12 ~ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~~ 56 (121)
T PRK09413 12 RRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEG 56 (121)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 346677788999999999999999999999999999999886543
No 245
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.62 E-value=4.9e+02 Score=22.26 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=48.0
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc--CCccEEEecCCCH--HHHHHHHHcCCCeEEEeecCCccCC
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDM 260 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir~iGvSn~~~--~~l~~~~~~g~~~~~~Q~~yn~l~~ 260 (324)
-.+.| -+.+|++=+-++-. .....+.++++++. +..-.+++--.++ .+++++.+.|..+.++..+-..
T Consensus 17 ~~~~l-~~~v~~iev~~~l~----~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~--- 88 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGTPLI----KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADD--- 88 (206)
T ss_pred HHHHc-ccCeeEEEeCCHHH----HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCH---
Confidence 33455 35677766532210 23346667777776 3322233322233 3677777777655554443221
Q ss_pred CccHHHHHHHHHcCceEEE
Q 020566 261 RPQQKMAELCQLTGVKLIT 279 (324)
Q Consensus 261 ~~~~~ll~~~~~~gI~via 279 (324)
..-.+++++|+++|+.++.
T Consensus 89 ~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 1124799999999998875
No 246
>PRK10508 hypothetical protein; Provisional
Probab=22.59 E-value=1.3e+02 Score=28.72 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=28.2
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHH
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (324)
.+++.|.+.|++-.+++|+|.+ +++.+.. +.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~~---~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQIF---DHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCCC---CHHHHHHHHHHHH
Confidence 4889999999999999998877 3333321 2555555555443
No 247
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.48 E-value=4.8e+02 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~a 144 (324)
+.+++.++.+..++.|++.|.-....-...+.+.+.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l 60 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLI 60 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHH
Confidence 679999999999999999999875444455555443
No 248
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.39 E-value=1.5e+02 Score=24.17 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=28.2
Q ss_pred HHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHc
Q 020566 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (324)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (324)
+..+.+.|+.+....+|+++++..+.-.....+....++.+.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 44556666666666788888877765444455666666666665
No 249
>PRK10200 putative racemase; Provisional
Probab=22.39 E-value=5.2e+02 Score=23.03 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=47.2
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCC----------CCC-HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~----------~~~-~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (324)
+-+..++-++..-.+.+.++.|.+.+|.++.. .++ .....+.++.|.+.| +..|-+...++....+.+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 44566666677777888899999999987421 111 344666677777777 799999888876654444
Q ss_pred H
Q 020566 243 E 243 (324)
Q Consensus 243 ~ 243 (324)
+
T Consensus 94 ~ 94 (230)
T PRK10200 94 E 94 (230)
T ss_pred H
Confidence 4
No 250
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=22.32 E-value=2.8e+02 Score=24.89 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=66.5
Q ss_pred EEEecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCc------cEEEecCC
Q 020566 160 VRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI------KTVALTNF 233 (324)
Q Consensus 160 v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I------r~iGvSn~ 233 (324)
|..++|...+ +.--.....-++..-+--+...|+-+++-..+.... ..|.+.-.++|.+.|-- .+-|+++.
T Consensus 62 VLGtsky~~~--g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s-YnEp~tM~kdL~~~GVp~~~i~lDyAGFrTL 138 (235)
T COG2949 62 VLGTSKYLAK--GPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS-YNEPRTMRKDLIAAGVPAKNIFLDYAGFRTL 138 (235)
T ss_pred EEeccccccC--CCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCccc-ccchHHHHHHHHHcCCCHHHeeecccCccHH
Confidence 3445565443 111234455566666666667788888876655443 66777667888888853 35566543
Q ss_pred CHHHHHHHHH-cC-CCeEEEeecCCccCCCccHHHHHHHHHcCceEEEccc
Q 020566 234 DTERLRIILE-NG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 234 ~~~~l~~~~~-~g-~~~~~~Q~~yn~l~~~~~~~ll~~~~~~gI~via~sp 282 (324)
+-+..+.+ .| ..+.++--+||. | .-+=.|+.+||..+++..
T Consensus 139 --DSvvRA~kVF~~~~ftIItQ~FHc-----e-RAlfiA~~~gIdAic~~a 181 (235)
T COG2949 139 --DSVVRARKVFGTNDFTIITQRFHC-----E-RALFIARQMGIDAICFAA 181 (235)
T ss_pred --HHHHHHHHHcCcCcEEEEeccccc-----H-HHHHHHHHhCCceEEecC
Confidence 33333333 23 247777667764 2 456689999999887653
No 251
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=22.31 E-value=7.2e+02 Score=24.06 Aligned_cols=131 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCC-eeecCCCCCChHHHHHHHHhhhhhcC---CCcceeEEEEecccC-CC-CCCCCHHHHHHhH
Q 020566 109 DRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRRER---PPEFLDKVRGLTKWV-PP-PVKMTSSIVRESI 182 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin-~fDTA~~YG~sE~~lG~al~~~~r~r---~~~~~~~v~i~tK~~-~~-~~~~~~~~i~~~l 182 (324)
+.+....+.+.+...|++ +++|.-. ...+ .+-++++...... ......-+.+-.-+. +. .....++.++.-=
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~-~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~ 152 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLIT-QPDE-NIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPD 152 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccC-CCHH-HHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcC
Confidence 557777788888899997 6677642 1223 2345554432211 000111111111111 10 1133445544322
Q ss_pred HHHHhhcC---CCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 020566 183 DVSRRRMD---VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (324)
Q Consensus 183 e~SL~rLg---~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (324)
.+-+++|- -+.+-++-| -|+.+ ...+..+.++++|.+-++|=||-+.+++.++.+.|..
T Consensus 153 ~~~~~~~~~~~~~~i~~vTl---APE~~---~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 153 VELFKKFLCEAGGVITKVTL---APEED---QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred HHHHHHHHHhcCCCEEEEEE---CCCCC---ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 12222221 122333332 23333 3566778999999999999999999999999887643
No 252
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.28 E-value=5.7e+02 Score=22.88 Aligned_cols=86 Identities=9% Similarity=0.090 Sum_probs=45.9
Q ss_pred HhhcCCCccceEEeecCCCC--CCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHc-CCCeEEEeecCCccCCC
Q 020566 186 RRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILEN-GIPVVSNQVQHSVVDMR 261 (324)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~--~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~~ 261 (324)
+..+|. |-+.+|..+.. ...+ -|+.+.++.+.-.+.-|.--. .+.+.+.++.+. |..-.++---++-- ..
T Consensus 162 ~~~~g~---~~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~-~~ 235 (253)
T PRK02083 162 VEELGA---GEILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG-EI 235 (253)
T ss_pred HHHcCC---CEEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC-CC
Confidence 345565 55566654321 1112 255666676655566555443 467788887764 54222221112211 22
Q ss_pred ccHHHHHHHHHcCceE
Q 020566 262 PQQKMAELCQLTGVKL 277 (324)
Q Consensus 262 ~~~~ll~~~~~~gI~v 277 (324)
.-.+++++|++.||.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 236 TIGELKAYLAEQGIPV 251 (253)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 3348899999998864
No 253
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.24 E-value=6.8e+02 Score=23.77 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA 131 (324)
++.++..++++..-++|+..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 466888899999889999999983
No 254
>PRK00915 2-isopropylmalate synthase; Validated
Probab=22.23 E-value=5.2e+02 Score=26.19 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=56.0
Q ss_pred CCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHH----cCC
Q 020566 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILE----NGI 246 (324)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~----~g~ 246 (324)
.++.+.-.+ +-+.|.++|+|+|++= +|.... .-++.+.++.+.++ ++..+++......++.+.+ .+.
T Consensus 22 ~~s~e~K~~-ia~~L~~~Gv~~IE~G---~p~~s~----~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 22 SLTVEEKLQ-IAKQLERLGVDVIEAG---FPASSP----GDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEc---CCCCCh----HHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 345555444 4445999999988884 342211 12444555554444 6666666555666776663 343
Q ss_pred CeEEEeecCCccC------CCcc------HHHHHHHHHcCceEEEccc
Q 020566 247 PVVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 247 ~~~~~Q~~yn~l~------~~~~------~~ll~~~~~~gI~via~sp 282 (324)
+-..+-+.-|.++ ...+ .+.+++|+++|..+. |++
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~ 140 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSA 140 (513)
T ss_pred CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEe
Confidence 3333333333322 1111 268889999998763 443
No 255
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=22.13 E-value=5.3e+02 Score=25.06 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHcCCCeEEEeecCCccCCCc-cHHHHHHHHHcCceEEEccccccCcC
Q 020566 232 NFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLL 288 (324)
Q Consensus 232 n~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~-~~~ll~~~~~~gI~via~spLa~G~L 288 (324)
..+.+.++++++...+..++....|+.-... -+++.+.|+++|+.++.=...+.|.+
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3466777776654445666666777753322 34788889999998886555554443
No 256
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=22.08 E-value=2.5e+02 Score=23.21 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=33.8
Q ss_pred HhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 020566 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (324)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~ 259 (324)
.+|.++|+.+| ++|++++.. ..+.+ .++.++=.|..|-+. -+|.+-.
T Consensus 56 ~~L~~~L~~~g---~~L~v~~g~------~~~~l---~~l~~~~~~~~V~~~---------------------~~~~~~~ 102 (165)
T PF00875_consen 56 ADLQESLRKLG---IPLLVLRGD------PEEVL---PELAKEYGATAVYFN---------------------EEYTPYE 102 (165)
T ss_dssp HHHHHHHHHTT---S-EEEEESS------HHHHH---HHHHHHHTESEEEEE------------------------SHHH
T ss_pred HHHHHHHHhcC---cceEEEecc------hHHHH---HHHHHhcCcCeeEec---------------------cccCHHH
Confidence 44566677776 568887764 23333 333332224444432 2233322
Q ss_pred CCccHHHHHHHHHcCceEEEcc
Q 020566 260 MRPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 260 ~~~~~~ll~~~~~~gI~via~s 281 (324)
+..+..+.+.|.++||.+..+.
T Consensus 103 ~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 103 RRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHHHHhcceEEEEEC
Confidence 2334466677777777776554
No 257
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=22.06 E-value=87 Score=22.48 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.1
Q ss_pred hhh--hhhhhHHHHHH
Q 020566 17 SLS--TFLPLLSIVQT 30 (324)
Q Consensus 17 ~~~--~~~~~~~~~~~ 30 (324)
++| .||+.|++.+.
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 445 89999888554
No 258
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=22.02 E-value=1.2e+02 Score=23.87 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCC
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG 135 (324)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 447788999999999999999999984
No 259
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=21.94 E-value=48 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=17.7
Q ss_pred ceEEecCCCccccCceeeccc
Q 020566 79 SITVSNGNDSLEICRVLNGMW 99 (324)
Q Consensus 79 ~~~~~lG~tg~~vs~lglGt~ 99 (324)
+..+.++.+|+.||.+-+|++
T Consensus 15 s~~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 15 SLGRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred cccccccccccCCceeeecch
Confidence 357789999999999999883
No 260
>PLN02438 inositol-3-phosphate synthase
Probab=21.92 E-value=4.6e+02 Score=26.66 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHHhHHHHHhhcCCCccceEEeecCCCCC---CCHHHHHHHHHHHHHcCC
Q 020566 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSN---PGYLDALNHLTDLKEEGK 224 (324)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~---~~~~e~~~aL~~l~~~G~ 224 (324)
+.|++.+++--++-|+|.+=++..-+-++.. ++..++++.|++..+++.
T Consensus 207 e~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 207 DQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 6777888888888899987666665543321 134468888888888775
No 261
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=21.79 E-value=7.1e+02 Score=23.80 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=77.8
Q ss_pred CceeeccccCCCCCC-----CCCHHHHHHHHHHHHHc---CCCeeecCCCCCC-hHHHHHHHHhhhhhcCCCcceeEEEE
Q 020566 92 CRVLNGMWQTSGGWG-----RIDRDDAVDAMLRYADA---GLTTFDMADHYGP-AEDLYGIFINRVRRERPPEFLDKVRG 162 (324)
Q Consensus 92 s~lglGt~~~g~~~~-----~~~~~~~~~~l~~Al~~---Gin~fDTA~~YG~-sE~~lG~al~~~~r~r~~~~~~~v~i 162 (324)
..+|-=|.++-. ++ ..+.++-.+++....+. =+-.+|..+..+. .++ +-+.+. +.. -+.|
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~-l~~~~~----~~p-----iilV 96 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPE-LKRFVG----GNP-----VLLV 96 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHH-HHHHhC----CCC-----EEEE
Confidence 345555555432 22 23455566655555432 1235576554443 122 222221 211 4678
Q ss_pred ecccCCCCCCCCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 020566 163 LTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (324)
Q Consensus 163 ~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (324)
.+|.--.+...+.+.+.+-+.+-++.+|....|++.+-.-. ...+++.++.+.++.+.+.|-.+|.+|..-..+-..
T Consensus 97 ~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~--g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 97 GNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK--GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred EEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC--CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 89864222234556676666666777876545666654332 224788888888887666788999999998765443
No 262
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=21.74 E-value=6.8e+02 Score=24.11 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=49.9
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCC-CccHHHHHHHH
Q 020566 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (324)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~yn~l~~-~~~~~ll~~~~ 271 (324)
|-+++..+. +......++.+...| .+..+. .+.+.++++++. ..+..++....||.-. .+-+++.+.|+
T Consensus 93 D~Vlv~~~~-----y~~~~~~~~~~~~~g~~v~~~~---~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~ 164 (385)
T PRK08574 93 DRVVLPMEA-----YGTTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAK 164 (385)
T ss_pred CEEEEcCCC-----chhHHHHHHHhhccCcEEEEEC---CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 555554442 223334444443444 233332 356777777654 4556666666776422 22348999999
Q ss_pred HcCceEEEccccccCcC
Q 020566 272 LTGVKLITYGTVMGGLL 288 (324)
Q Consensus 272 ~~gI~via~spLa~G~L 288 (324)
++|+.++.=...+.|..
T Consensus 165 ~~gi~livD~t~a~~~~ 181 (385)
T PRK08574 165 ELGAILVVDNTFATPLL 181 (385)
T ss_pred HcCCEEEEECCCCcccc
Confidence 99999997777665543
No 263
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.70 E-value=3.5e+02 Score=24.16 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=51.9
Q ss_pred HHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEeecCCccCC
Q 020566 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDM 260 (324)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q~~yn~l~~ 260 (324)
+-+.|-+=|++-|.+=+ ..+.-.++++.+.+.+. =--||.-+ .++++++++.+.|-.|. .+|
T Consensus 30 ~a~Ali~gGi~~IEITl------~sp~a~e~I~~l~~~~p---~~lIGAGTVL~~~q~~~a~~aGa~fi-----VsP--- 92 (211)
T COG0800 30 LAKALIEGGIPAIEITL------RTPAALEAIRALAKEFP---EALIGAGTVLNPEQARQAIAAGAQFI-----VSP--- 92 (211)
T ss_pred HHHHHHHcCCCeEEEec------CCCCHHHHHHHHHHhCc---ccEEccccccCHHHHHHHHHcCCCEE-----ECC---
Confidence 34455555766555432 23335667766666665 12467654 68999999999886443 343
Q ss_pred CccHHHHHHHHHcCceEE
Q 020566 261 RPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 261 ~~~~~ll~~~~~~gI~vi 278 (324)
..+.++++.|.++||.++
T Consensus 93 ~~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 93 GLNPEVAKAANRYGIPYI 110 (211)
T ss_pred CCCHHHHHHHHhCCCccc
Confidence 446699999999999876
No 264
>PRK07671 cystathionine beta-lyase; Provisional
Probab=21.66 E-value=7.2e+02 Score=23.81 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=24.5
Q ss_pred CHHHHHHHHHcCCCeEEEeecCCccCC-CccHHHHHHHHHcCceEEEccccc
Q 020566 234 DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVM 284 (324)
Q Consensus 234 ~~~~l~~~~~~g~~~~~~Q~~yn~l~~-~~~~~ll~~~~~~gI~via~spLa 284 (324)
+.+.++++++...+..++..+.|+.-. ..-+++.+.|+++|+.++.=...+
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 444454444333334444445554311 122356666666666666544443
No 265
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.63 E-value=5e+02 Score=21.93 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=38.2
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-----CccHHHHHHHHHcCceEEEcc
Q 020566 223 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-----RPQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 223 G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~-----~~~~~ll~~~~~~gI~via~s 281 (324)
+.=+.||+|.|+.++++++.+.+..+.+.---|.--.. ...+.+.++++...+++++..
T Consensus 93 ~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 93 GPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp TTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEES
T ss_pred ccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEc
Confidence 33457999999999999988776544443322221111 112367788888899998864
No 266
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=21.48 E-value=4.3e+02 Score=26.26 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCC-ccEEEecCC---CHHHHHHHHHcCCCeEEEe-ecCCccCCCccHHHHHHHHHcCceEEEccccccC
Q 020566 212 ALNHLTDLKEEGK-IKTVALTNF---DTERLRIILENGIPVVSNQ-VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 212 ~~~aL~~l~~~G~-Ir~iGvSn~---~~~~l~~~~~~g~~~~~~Q-~~yn~l~~~~~~~ll~~~~~~gI~via~spLa~G 286 (324)
+.+..+.++++|. |+++.|.+- +.+.++++++.......+. +...+.-..+-+++...|++.||.+..=..-+=|
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG 223 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG 223 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcC
Confidence 4455567788885 678888753 3455666665443332222 2222222356678999999999988766555545
Q ss_pred c
Q 020566 287 L 287 (324)
Q Consensus 287 ~ 287 (324)
.
T Consensus 224 ~ 224 (428)
T KOG1549|consen 224 K 224 (428)
T ss_pred C
Confidence 3
No 267
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.42 E-value=7.1e+02 Score=23.66 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=56.1
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEEec-----------CC-CHHHHH
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT-----------NF-DTERLR 239 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvS-----------n~-~~~~l~ 239 (324)
.+++.|.+.++. ....|...+.+..-+.|+ . ..+...+.++.++++. .+.-..++ .. +.+.++
T Consensus 79 l~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~--~-~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~ 154 (351)
T TIGR03700 79 MSLEEIVARVKE-AYAPGATEVHIVGGLHPN--L-PFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLD 154 (351)
T ss_pred CCHHHHHHHHHH-HHHCCCcEEEEecCCCCC--C-CHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHH
Confidence 567777776664 355777777776544443 2 2555666666676664 23322211 11 234456
Q ss_pred HHHHcCCC-eE--EEee-------cCCccCCCccH--HHHHHHHHcCceEEEccccccC
Q 020566 240 IILENGIP-VV--SNQV-------QHSVVDMRPQQ--KMAELCQLTGVKLITYGTVMGG 286 (324)
Q Consensus 240 ~~~~~g~~-~~--~~Q~-------~yn~l~~~~~~--~ll~~~~~~gI~via~spLa~G 286 (324)
++.+.|.. +- ..+. .+++-....++ +.++.+++.||.+-+.--++-|
T Consensus 155 ~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 155 ELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred HHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 66655531 00 0111 01111111223 6778888888877666655544
No 268
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.28 E-value=7.2e+02 Score=23.68 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCh--HHHH--HHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA--EDLY--GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~l--G~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (324)
+.++..+.+..+.+.|++.|=.- .++.. ++-+ =+++++.-.+ ++.+.--. + ..++.+...+- -+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~-------~~~l~vDa-n--~~~~~~~A~~~-~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGP-------DMRLMHDG-A--HWYSRADALRL-GR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCC-------CCeEEEEC-C--CCcCHHHHHHH-HH
Confidence 55777788888899999988652 22211 1111 1223221111 12222111 1 13455543322 22
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCCC-HHHHHHHHHcCCCeEEEeecCCccCC-C
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFD-TERLRIILENGIPVVSNQVQHSVVDM-R 261 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~-~~~l~~~~~~g~~~~~~Q~~yn~l~~-~ 261 (324)
.|+.+ ++.++..|-+. +-++.+.+++++-.+. ..|=+-++ ...++++++.+ ..+++|+..+..-. .
T Consensus 211 ~l~~~-----~l~~iEeP~~~-----~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-a~d~v~~d~~~~GGit 279 (368)
T cd03329 211 ALEEL-----GFFWYEDPLRE-----ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-ATDFLRADVNLVGGIT 279 (368)
T ss_pred Hhhhc-----CCCeEeCCCCc-----hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-CCCEEecCccccCCHH
Confidence 33444 45555555321 2346677888876555 23445567 88889888875 48888888765322 2
Q ss_pred ccHHHHHHHHHcCceEEEcc
Q 020566 262 PQQKMAELCQLTGVKLITYG 281 (324)
Q Consensus 262 ~~~~ll~~~~~~gI~via~s 281 (324)
.-.++.+.|+++||.++..+
T Consensus 280 ~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 280 GAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHHcCCEEEEEC
Confidence 23489999999999998754
No 269
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.11 E-value=1.2e+02 Score=29.86 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCCee-ecCCCCCChHHHHHHHHhhhhhcCCCcceeEEEEecc--------cCCCCCCCCHHHH
Q 020566 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK--------WVPPPVKMTSSIV 178 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK--------~~~~~~~~~~~~i 178 (324)
.+.+.-.+-++.|.+.|-..+ |-+. -|+-.++--..|+..+ +-|.|- ......+.+.+.+
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLSt-ggdl~~iR~~il~~~~----------vpvGTVPiYqa~~~~~~~~~~~t~d~~ 141 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLST-GGDLDEIRRAILENSP----------VPVGTVPIYQAAIRKGGSIVDMTEDDF 141 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHHHT-S----------S-EEE-HHHHHHHHTTT-GGG--HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCC-CCCHHHHHHHHHHhCC----------CccccchHHHHHHHhCCChhhCCHHHH
Confidence 355666778889999998754 6554 2554443233333322 222321 1122236788999
Q ss_pred HHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-cCCCeEEEeecCCc
Q 020566 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSV 257 (324)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~g~~~~~~Q~~yn~ 257 (324)
.+.+++..+. -+|.+-+|.-- ..+.++.++++|++- |+-+-.-.-+..++. ++ .=||
T Consensus 142 ~~~ie~qa~~----GVDfmtiH~gi--------t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~n~--------~ENP 199 (420)
T PF01964_consen 142 FDVIEKQAKD----GVDFMTIHCGI--------TRETLERLKKSGRIM--GIVSRGGSILAAWMLHNG--------KENP 199 (420)
T ss_dssp HHHHHHHHHH----T--EEEE-TT----------GGGGGGGT--TSSS------HHHHHHHHHHHHHT--------S--H
T ss_pred HHHHHHHHHc----CCCEEEEccch--------hHHHHHHHhhhcccc--CccccchHHHHHHHHhcC--------CcCc
Confidence 9988888774 47889999742 344567788888764 443333333333332 21 1123
Q ss_pred cCCCccHHHHHHHHHcCceEE
Q 020566 258 VDMRPQQKMAELCQLTGVKLI 278 (324)
Q Consensus 258 l~~~~~~~ll~~~~~~gI~vi 278 (324)
++. .-+++++.|+++++.+-
T Consensus 200 ly~-~fD~lLeI~k~yDVtLS 219 (420)
T PF01964_consen 200 LYE-HFDRLLEIAKEYDVTLS 219 (420)
T ss_dssp HHH-THHHHHHHHTTTT-EEE
T ss_pred HHH-hHHHHHHHHHHhCeeEe
Confidence 221 22367777777777664
No 270
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=21.07 E-value=2.6e+02 Score=24.30 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=48.0
Q ss_pred CccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCC-ccCCCccHHHHHHH
Q 020566 192 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 270 (324)
Q Consensus 192 dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn-~l~~~~~~~ll~~~ 270 (324)
.-..+..+.++. ..+. .+++.+.|-. .+-+.-.+.+.+.++++ |....++-+... .-.......++++|
T Consensus 21 ~~~~V~~l~R~~-----~~~~---~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP-----SSDR---AQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS-----HHHH---HHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-----chhh---hhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 335666666653 1112 3556666663 45555556777777775 333333333322 11112244799999
Q ss_pred HHcCceEEEccccccCc
Q 020566 271 QLTGVKLITYGTVMGGL 287 (324)
Q Consensus 271 ~~~gI~via~spLa~G~ 287 (324)
++.||..+.+|.++...
T Consensus 91 ~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGADY 107 (233)
T ss_dssp HHHT-SEEEESEESSGT
T ss_pred hccccceEEEEEecccc
Confidence 99999999998886543
No 271
>PLN02509 cystathionine beta-lyase
Probab=21.01 E-value=6.9e+02 Score=24.97 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHcCCCeEEEeecCCccCCC-ccHHHHHHHHHcCceEEEccccccCcCC
Q 020566 233 FDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLLS 289 (324)
Q Consensus 233 ~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~-~~~~ll~~~~~~gI~via~spLa~G~Lt 289 (324)
.+.+.+++++....+..++....|+.-.. .-+++.+.|+++|+.++.=..++.|.+.
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~ 262 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLS 262 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 45677776664444566667777774322 2347899999999999988887777653
No 272
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.84 E-value=6.7e+02 Score=23.17 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCHHHHHHhHHHHHhhc---CCCccceE------EeecCCCCCCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHH
Q 020566 173 MTSSIVRESIDVSRRRM---DVPCLDML------QFHWWDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLR 239 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rL---g~dyiDl~------~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~ 239 (324)
.+++.++......++++ |+-|+|+. .-+..+.+.. .+...+++++.+++--|+. .+..+.+++.++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~-~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~ 144 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEV-VEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQ 144 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHH-HHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHH
Q ss_pred HHHH-----cCCCeEEEeecCCccCCCccH--HHHHHHHHcCceEEEc
Q 020566 240 IILE-----NGIPVVSNQVQHSVVDMRPQQ--KMAELCQLTGVKLITY 280 (324)
Q Consensus 240 ~~~~-----~g~~~~~~Q~~yn~l~~~~~~--~ll~~~~~~gI~via~ 280 (324)
+.++ ....+.-+-+..+......+. .+++.|+++|+.+..+
T Consensus 145 ~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 145 ETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEe
No 273
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.57 E-value=28 Score=24.85 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHHHhhhh
Q 020566 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVR 149 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~ 149 (324)
.+.+.-.++|..++..|.+.-+.|..||-+...|..|++...
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 467888899999999999999999999999999999998864
No 274
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.55 E-value=5.6e+02 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeee
Q 020566 108 IDRDDAVDAMLRYADAGLTTFD 129 (324)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fD 129 (324)
.|.+++.+.+..+++.|+...|
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 3678899999999999976544
No 275
>PLN02389 biotin synthase
Probab=20.50 E-value=7.9e+02 Score=23.85 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=62.4
Q ss_pred CCHHHHHHhHHHHHhhcCCCccceEE-eecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCCeE
Q 020566 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVV 249 (324)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn--~~~~~l~~~~~~g~~~~ 249 (324)
.+++.|.+.++.. ...|...+-+.- .+........++...+.+..+++.|. .+.+|+ .+.++++++.+.|+.
T Consensus 116 Ls~EeIl~~a~~~-~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~i~~s~G~l~~E~l~~LkeAGld-- 190 (379)
T PLN02389 116 MSKDDVLEAAKRA-KEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--EVCCTLGMLEKEQAAQLKEAGLT-- 190 (379)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--EEEECCCCCCHHHHHHHHHcCCC--
Confidence 6788888887764 456887754431 01111111126677788888876663 344444 567888888887743
Q ss_pred EEeecCC-------ccC--CCccH--HHHHHHHHcCceEEEcccccc
Q 020566 250 SNQVQHS-------VVD--MRPQQ--KMAELCQLTGVKLITYGTVMG 285 (324)
Q Consensus 250 ~~Q~~yn-------~l~--~~~~~--~ll~~~~~~gI~via~spLa~ 285 (324)
.++..+. -+. ...++ +.++.+++.||.+-+..-++-
T Consensus 191 ~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 191 AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 2222222 111 11222 788999999998766555443
No 276
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=20.46 E-value=7.8e+02 Score=23.75 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc--
Q 020566 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-- 262 (324)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~yn~l~~~~-- 262 (324)
.|++.|.| ++=+--| ..+..+++.+.+++=.|=-|+=-.|+...+.+..+.|. --+..||-+...
T Consensus 44 ~L~~aG~d---IVRvtv~------~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~----~k~RINPGNig~~~ 110 (361)
T COG0821 44 ALERAGCD---IVRVTVP------DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGV----DKVRINPGNIGFKD 110 (361)
T ss_pred HHHHcCCC---EEEEecC------CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCc----ceEEECCcccCcHH
Confidence 46777864 5444433 34677889999999999888888888776666666652 234455554333
Q ss_pred -cHHHHHHHHHcCceE
Q 020566 263 -QQKMAELCQLTGVKL 277 (324)
Q Consensus 263 -~~~ll~~~~~~gI~v 277 (324)
-.++++.|+++|+++
T Consensus 111 ~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 111 RVREVVEAAKDKGIPI 126 (361)
T ss_pred HHHHHHHHHHHcCCCE
Confidence 238999999999987
No 277
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=20.39 E-value=6e+02 Score=22.38 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=58.2
Q ss_pred CHHHHHHhHHHHHhhcCCCccceEEeecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEee
Q 020566 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (324)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (324)
+.+.+.+..+...+..+ ..++--|- ..+.++++.+|+++| |+--.-.-|+..|...+.+.|..+ +..
T Consensus 62 ~~e~~i~~a~~l~~~~~-----~~~iKIP~-----T~~gl~ai~~L~~~g-i~v~~T~V~s~~Qa~~Aa~AGA~y--vsP 128 (211)
T cd00956 62 DAEGMVAEARKLASLGG-----NVVVKIPV-----TEDGLKAIKKLSEEG-IKTNVTAIFSAAQALLAAKAGATY--VSP 128 (211)
T ss_pred CHHHHHHHHHHHHHhCC-----CEEEEEcC-----cHhHHHHHHHHHHcC-CceeeEEecCHHHHHHHHHcCCCE--EEE
Confidence 66777777776555444 24444442 336888999999998 443333458999999998887433 555
Q ss_pred cCCccCCCc------cHHHHHHHHHcCce
Q 020566 254 QHSVVDMRP------QQKMAELCQLTGVK 276 (324)
Q Consensus 254 ~yn~l~~~~------~~~ll~~~~~~gI~ 276 (324)
.++-++... -.++.+.++++|+.
T Consensus 129 ~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 129 FVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred ecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 555433211 12788889888854
No 278
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.22 E-value=6.3e+02 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCChHHHHHHH
Q 020566 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (324)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~a 144 (324)
+.+++.++.+..++.|++.+.-...=.++.+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHH
Confidence 679999999999999999998776444455555443
No 279
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.21 E-value=7.1e+02 Score=23.22 Aligned_cols=120 Identities=10% Similarity=0.143 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeecCCCCCC---hHHHHHHHHhhhhhcCCCcceeEEEEecccCCCCCCCCHHHHHHhHH
Q 020566 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (324)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (324)
..+.++..++++.+.+.|+..|.-.- |. ... +-+.++...... .+ ..+.++|-.. .+. ..-
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~-l~~li~~i~~~~--gi-~~v~itTNG~---------ll~-~~~ 105 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKD-LVELVARLAALP--GI-EDIALTTNGL---------LLA-RHA 105 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCC-HHHHHHHHHhcC--CC-CeEEEEeCch---------hHH-HHH
Confidence 35678899999999999998776442 32 111 122333221110 11 1456666311 111 133
Q ss_pred HHHhhcCCCccceEEeecCCCC--------CCCHHHHHHHHHHHHHcCCc--c--EEEecCCCHHHHHHHHH
Q 020566 184 VSRRRMDVPCLDMLQFHWWDYS--------NPGYLDALNHLTDLKEEGKI--K--TVALTNFDTERLRIILE 243 (324)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~--------~~~~~e~~~aL~~l~~~G~I--r--~iGvSn~~~~~l~~~~~ 243 (324)
+.|.+.|++.|- +-++..+++ ...++++++.++.+++.|.- + .+-+.+.+.+++.++.+
T Consensus 106 ~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 106 KDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred HHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 456666766543 223443321 12478899999999999853 2 23344567777766654
No 280
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.17 E-value=6.3e+02 Score=22.55 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=36.1
Q ss_pred cCCccEEEecCCCHHHHHHHHHc--CCCeEEEe-------------e---cCCccCCCccHHHHHHHHHcCceEEEccc
Q 020566 222 EGKIKTVALTNFDTERLRIILEN--GIPVVSNQ-------------V---QHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (324)
Q Consensus 222 ~G~Ir~iGvSn~~~~~l~~~~~~--g~~~~~~Q-------------~---~yn~l~~~~~~~ll~~~~~~gI~via~sp 282 (324)
.+..+.+=+++|+++.+..+.+. .++....- . .+++-+.....++++.++++|+.+.+|..
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 34445677888888887777652 11111100 0 01111122345899999999999999974
Done!