Query 020567
Match_columns 324
No_of_seqs 85 out of 87
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 51.7 14 0.00047 26.9 3.5 25 13-37 3-27 (60)
2 1mdy_A Protein (MYOD BHLH doma 49.3 46 0.0016 24.8 6.1 32 7-38 7-38 (68)
3 3kgw_A Alanine-glyoxylate amin 48.9 30 0.001 29.4 5.7 26 40-65 325-350 (393)
4 1rz4_A Eukaryotic translation 48.1 9 0.00031 34.0 2.4 23 49-71 167-189 (226)
5 3bni_A Putative TETR-family tr 46.9 20 0.00069 28.8 4.2 47 14-71 36-82 (229)
6 3qqa_A CMER; alpha-helical, he 43.3 54 0.0018 25.2 5.9 48 14-72 12-59 (216)
7 2d5w_A Peptide ABC transporter 41.7 32 0.0011 32.8 5.3 22 50-71 375-396 (603)
8 3uwc_A Nucleotide-sugar aminot 40.6 52 0.0018 28.0 5.9 49 17-66 248-312 (374)
9 3ix7_A Uncharacterized protein 40.3 56 0.0019 27.1 5.9 46 16-63 52-101 (134)
10 4b0z_A RPN12, 26S proteasome r 39.3 28 0.00097 30.3 4.2 50 17-70 171-225 (229)
11 3kkc_A TETR family transcripti 39.2 49 0.0017 24.8 5.0 48 14-72 5-52 (177)
12 1hlo_A Protein (transcription 38.6 60 0.002 24.1 5.3 46 10-55 10-55 (80)
13 3frk_A QDTB; aminotransferase, 38.0 40 0.0014 29.0 4.9 46 17-64 247-307 (373)
14 3him_A Probable transcriptiona 37.4 33 0.0011 26.1 3.8 46 16-72 11-56 (211)
15 3lvu_A ABC transporter, peripl 37.1 34 0.0011 28.6 4.1 18 50-67 102-119 (258)
16 2kxh_B Peptide of FAR upstream 36.2 13 0.00045 25.0 1.2 11 20-30 14-24 (31)
17 3nnk_A Ureidoglycine-glyoxylat 36.1 57 0.0019 28.0 5.5 24 42-65 329-352 (411)
18 3u5v_A Protein MAX, transcript 36.1 19 0.00066 27.3 2.3 27 11-37 4-30 (76)
19 3isl_A Purine catabolism prote 35.6 62 0.0021 27.8 5.7 25 41-65 328-352 (416)
20 1nkp_B MAX protein, MYC proto- 34.9 77 0.0026 23.5 5.4 43 13-55 3-45 (83)
21 2huf_A Alanine glyoxylate amin 33.1 79 0.0027 27.0 5.9 21 45-65 325-345 (393)
22 2zb9_A Putative transcriptiona 32.2 35 0.0012 26.6 3.2 44 18-72 20-63 (214)
23 2o1b_A Aminotransferase, class 31.0 70 0.0024 28.2 5.4 25 41-65 342-366 (404)
24 3f1b_A TETR-like transcription 30.8 49 0.0017 25.1 3.8 45 17-72 10-54 (203)
25 2qwt_A Transcriptional regulat 30.3 75 0.0026 24.7 4.9 43 17-71 9-51 (196)
26 3lwj_A Putative TETR-family tr 29.2 56 0.0019 24.9 3.9 45 16-71 7-51 (202)
27 3lhq_A Acrab operon repressor 27.9 81 0.0028 24.0 4.6 46 15-71 8-53 (220)
28 3dcf_A Transcriptional regulat 26.7 54 0.0018 25.1 3.4 45 16-71 26-70 (218)
29 3mvp_A TETR/ACRR transcription 26.6 75 0.0026 24.3 4.2 45 16-71 21-65 (217)
30 3nrg_A TETR family transcripti 26.6 76 0.0026 24.4 4.3 44 18-72 10-53 (217)
31 3nyt_A Aminotransferase WBPE; 26.4 1.2E+02 0.0042 26.1 6.0 25 18-43 247-271 (367)
32 2qko_A Possible transcriptiona 26.4 72 0.0025 24.9 4.2 43 19-72 26-68 (215)
33 1pb6_A Hypothetical transcript 25.9 80 0.0027 24.1 4.3 45 17-72 14-58 (212)
34 3dpj_A Transcription regulator 25.7 62 0.0021 24.6 3.6 45 16-71 3-47 (194)
35 3ry3_A Putative solute-binding 24.7 73 0.0025 30.1 4.6 49 23-71 297-355 (528)
36 3ez1_A Aminotransferase MOCR f 23.5 1.6E+02 0.0055 25.7 6.3 24 49-72 357-380 (423)
37 3ffr_A Phosphoserine aminotran 23.5 1E+02 0.0035 25.7 4.8 48 17-65 265-327 (362)
38 1ng7_A Poliovirus 3A-N, genome 22.6 29 0.00098 26.1 1.1 12 53-64 35-46 (60)
39 3hbx_A GAD 1, glutamate decarb 22.6 96 0.0033 29.0 4.9 49 14-63 338-402 (502)
40 3mhs_B Protein SUS1; multi-pro 21.9 33 0.0011 27.2 1.4 33 25-62 7-39 (96)
41 4gl8_A Oligopeptide ABC transp 21.8 40 0.0014 31.3 2.2 39 23-61 315-363 (529)
42 3qbm_A TETR transcriptional re 21.7 1.4E+02 0.0047 22.5 4.8 45 17-72 3-47 (199)
43 3pam_A Transmembrane protein; 21.6 52 0.0018 27.4 2.6 18 50-67 103-120 (259)
44 2z61_A Probable aspartate amin 21.3 1.7E+02 0.0058 25.0 5.8 19 47-65 316-334 (370)
45 3nra_A Aspartate aminotransfer 21.0 1.6E+02 0.0056 25.2 5.7 24 46-70 349-372 (407)
46 3bru_A Regulatory protein, TET 20.9 67 0.0023 24.8 3.0 43 19-72 28-70 (222)
47 3dr4_A Putative perosamine syn 20.7 1.6E+02 0.0054 25.5 5.5 24 17-41 268-291 (391)
48 3aqt_A Bacterial regulatory pr 20.6 1E+02 0.0034 25.0 4.1 48 14-72 39-86 (245)
49 2x5d_A Probable aminotransfera 20.6 1.7E+02 0.006 25.5 5.9 23 47-70 343-365 (412)
50 3qkx_A Uncharacterized HTH-typ 20.5 1.3E+02 0.0043 22.4 4.3 44 18-72 5-48 (188)
51 1zu0_A Chitin oligosaccharide 20.4 1.1E+02 0.0037 28.8 4.8 24 50-73 324-348 (529)
52 3f0h_A Aminotransferase; RER07 20.4 1.4E+02 0.0049 25.2 5.1 46 19-65 279-337 (376)
53 3dew_A Transcriptional regulat 20.2 69 0.0024 24.1 2.8 44 17-71 4-47 (206)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=51.69 E-value=14 Score=26.92 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhc
Q 020567 13 RENNKRRERRRRAIAAKIFAGLRMY 37 (324)
Q Consensus 13 rEnnk~RERrRRaiaakI~~Glr~~ 37 (324)
|.....|||+|+.---.-|..||.+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~ 27 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKV 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566689999999999999999985
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=49.31 E-value=46 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCChHHHhhhHHHHHHHHHHHHHHHHhhhhcC
Q 020567 7 LPTWKERENNKRRERRRRAIAAKIFAGLRMYG 38 (324)
Q Consensus 7 ~ptw~ErEnnk~RERrRRaiaakI~~Glr~~g 38 (324)
-.+..-|.....|||+|+.---.-|..||.+=
T Consensus 7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~i 38 (68)
T 1mdy_A 7 TTNADRRKAATMRERRRLSKVNEAFETLKRST 38 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677788999999999999999999873
No 3
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=48.91 E-value=30 Score=29.36 Aligned_cols=26 Identities=4% Similarity=0.147 Sum_probs=19.9
Q ss_pred CCCCCcCChHHHHHHHHHhcCceECC
Q 020567 40 YKLPKHCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 40 y~lp~~~d~nevl~al~~eagw~ve~ 65 (324)
+.+|+..|..+|.+.|.+++|..|.+
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 325 VTVPAGYNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp EECCTTBCHHHHHHHHHHHHCEECBC
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 34455667789999998888988875
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=48.15 E-value=9 Score=34.02 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCceECCCCcccc
Q 020567 49 NEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 49 nevl~al~~eagw~ve~dgttyr 71 (324)
++-++..|.+.||.||.||..|=
T Consensus 167 ~~el~~fi~~~GW~vd~~g~I~~ 189 (226)
T 1rz4_A 167 DSQLKVWMSKYGWSADESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHTCEECC--CEEC
T ss_pred HHHHHHHHHHCCCEECCCccEEe
Confidence 36678888889999999998754
No 5
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=46.91 E-value=20 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 14 ENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 14 Ennk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
-..++++.+|++|...-..=+..+|--++- ++.+|++||.- -||.|+
T Consensus 36 ~~~~r~~~~r~~Il~aA~~l~~~~G~~~~t--------v~~IA~~AGvs---~~t~Y~ 82 (229)
T 3bni_A 36 PVQRRSAERLTRILDACADLLDEVGYDALS--------TRAVALRADVP---IGSVYR 82 (229)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHHTCC---HHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHhcChhhcc--------HHHHHHHHCCC---chhHHH
Confidence 344556677777877777767777633332 44456666642 456666
No 6
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=43.27 E-value=54 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 14 ENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 14 Ennk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
.+.+|.|++|++|...-..=+..+|--.+ . ++.+|++||. --||.|+.
T Consensus 12 ~~~~r~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agv---s~~tlY~~ 59 (216)
T 3qqa_A 12 TPSQKVLARQEKIKAVALELFLTKGYQET----S----LSDIIKLSGG---SYSNIYDG 59 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTT---SCCSSSCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHcChhhC----C----HHHHHHHhCC---CHHHHHHh
Confidence 34566677777776666666666664332 2 5667888886 46888884
No 7
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=41.71 E-value=32 Score=32.83 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCceECCCCcccc
Q 020567 50 EVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 50 evl~al~~eagw~ve~dgttyr 71 (324)
|--|+|++||||..+.||..+.
T Consensus 375 ~kAk~LL~eAG~~~~~dG~~~~ 396 (603)
T 2d5w_A 375 KKAEALLAEMGWRKGPDGILQR 396 (603)
T ss_dssp HHHHHHHHHTTCEECTTSCEEE
T ss_pred HHHHHHHHHcCCcCCCCCeEee
Confidence 6678999999999777776554
No 8
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=40.56 E-value=52 Score=28.03 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC-CCCCCc--------------C-ChHHHHHHHHHhcCceECCC
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGN-YKLPKH--------------C-DNNEVLKALCNEAGWTVEPD 66 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gn-y~lp~~--------------~-d~nevl~al~~eagw~ve~d 66 (324)
+++.+||++++..+..+|+..++ +.+|.. . |..+|.++| .++|..|-.-
T Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gi~v~~~ 312 (374)
T 3uwc_A 248 ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYL-KDNGIEVKIH 312 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHH-HHTTBCCBCS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHH-HHCCCccccC
Confidence 44556777888999999999887 666521 1 334555554 5668877543
No 9
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=40.33 E-value=56 Score=27.08 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCC----CCCCcCChHHHHHHHHHhcCceE
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNY----KLPKHCDNNEVLKALCNEAGWTV 63 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny----~lp~~~d~nevl~al~~eagw~v 63 (324)
+.+|.|-||++ +|...||..+++ .++...+..+.|.+||.+.|-++
T Consensus 52 ~~~r~rGr~gL--~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~l 101 (134)
T 3ix7_A 52 PLRRAKGRRGL--ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAAL 101 (134)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHH--HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEE
Confidence 56788888887 477888764432 45667788999999999987554
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=39.27 E-value=28 Score=30.26 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCC-----CcCChHHHHHHHHHhcCceECCCCccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLP-----KHCDNNEVLKALCNEAGWTVEPDGTTY 70 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp-----~~~d~nevl~al~~eagw~ve~dgtty 70 (324)
...+|=|..|+.-|-. +|-.+.|. =.-|+.|=+...|.+.||.++ ||..|
T Consensus 171 ~l~~~vR~~~l~~i~k---aY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~ 225 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEK---VYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHH---HCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHH---HcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEe
Confidence 3456777778777753 34322222 245666667889999999997 88766
No 11
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=39.21 E-value=49 Score=24.76 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 14 ENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 14 Ennk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
...++++++|++|......=+..+|--+ .. ++.+|++||.- -||.|+.
T Consensus 5 ~~~~r~~~tr~~Il~aa~~l~~~~G~~~----~t----v~~Ia~~agvs---~~t~Y~~ 52 (177)
T 3kkc_A 5 VKDRQIQKTKVAIYNAFISLLQENDYSK----IT----VQDVIGLANVG---RSTFYSH 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCTTT----CC----HHHHHHHHCCC---HHHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCChhH----hh----HHHHHHHhCCc---HhhHHHH
Confidence 3456677777777766666666655222 22 45667888864 4777774
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.57 E-value=60 Score=24.10 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=31.0
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHH
Q 020567 10 WKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKAL 55 (324)
Q Consensus 10 w~ErEnnk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al 55 (324)
..-|.+-..+||+||.--..-|.-||.+=-.......+--++|+.-
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~A 55 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKA 55 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHH
Confidence 3457778889999999888888999886322111345556666543
No 13
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=38.01 E-value=40 Score=29.02 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCc--------------C-ChHHHHHHHHHhcCceEC
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKH--------------C-DNNEVLKALCNEAGWTVE 64 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~--------------~-d~nevl~al~~eagw~ve 64 (324)
+++.+||++++.++..+|+..+ +.+|.. . |..+|.++| ++.|..|-
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 307 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYL-NNNGIGTL 307 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHH-HHTTBCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHH-HHCCCCcc
Confidence 4456677889999999999887 666531 1 334555555 45587764
No 14
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=37.40 E-value=33 Score=26.11 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
.++++++|++|...-..=+..+|--+ .. ++.+|++||. --||.|+.
T Consensus 11 ~~~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~~ 56 (211)
T 3him_A 11 ELGTSKAAARIRAAAIEVFAAKGYGA----TT----TREIAASLDM---SPGAVYPH 56 (211)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCSTT----CC----HHHHHHHTTC---CTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc----CC----HHHHHHHhCC---CcChhhhc
Confidence 34455666666655555556665322 22 5566888886 56888885
No 15
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=37.11 E-value=34 Score=28.58 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCceECCCC
Q 020567 50 EVLKALCNEAGWTVEPDG 67 (324)
Q Consensus 50 evl~al~~eagw~ve~dg 67 (324)
|--|+|.+||||....||
T Consensus 102 ~kAk~LL~eaG~~~~~~g 119 (258)
T 3lvu_A 102 RRAAQFLEQAGFRIEQGQ 119 (258)
T ss_dssp HHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCEeCCCc
Confidence 667889999999976555
No 16
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=36.19 E-value=13 Score=24.98 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 020567 20 ERRRRAIAAKI 30 (324)
Q Consensus 20 ERrRRaiaakI 30 (324)
-+|-|+|||||
T Consensus 14 ~~RaRQIaAKi 24 (31)
T 2kxh_B 14 LQRARQIAAKI 24 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35778999998
No 17
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=36.07 E-value=57 Score=28.02 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCcCChHHHHHHHHHhcCceECC
Q 020567 42 LPKHCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 42 lp~~~d~nevl~al~~eagw~ve~ 65 (324)
+|+..|..+|.+.|.++.|..|-+
T Consensus 329 ~~~~~~~~~l~~~l~~~~gi~v~~ 352 (411)
T 3nnk_A 329 IPQGINGDQARKLMLEDFGIEIGT 352 (411)
T ss_dssp CCTTCCHHHHHHHHHHHHSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcCeEEeC
Confidence 455567788999998888998864
No 18
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=36.07 E-value=19 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhc
Q 020567 11 KERENNKRRERRRRAIAAKIFAGLRMY 37 (324)
Q Consensus 11 ~ErEnnk~RERrRRaiaakI~~Glr~~ 37 (324)
.-|++...|||+||.=.-.-|..||..
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~ 30 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRM 30 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHH
Confidence 457778889999998777788888874
No 19
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=35.56 E-value=62 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCCCcCChHHHHHHHHHhcCceECC
Q 020567 41 KLPKHCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 41 ~lp~~~d~nevl~al~~eagw~ve~ 65 (324)
.+|+..|..+|.+.|.+++|..|.+
T Consensus 328 ~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 328 EIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred eCCCCCCHHHHHHHHHHhCCEEEec
Confidence 4455567789999998888988873
No 20
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.89 E-value=77 Score=23.52 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=28.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHH
Q 020567 13 RENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKAL 55 (324)
Q Consensus 13 rEnnk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al 55 (324)
|++-..+||+||.--..-|.-||..=-.-.....+-.++|+.-
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~A 45 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKA 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Confidence 7778889999998888888888875211111345666666543
No 21
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=33.09 E-value=79 Score=27.01 Aligned_cols=21 Identities=5% Similarity=-0.201 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHhcCceECC
Q 020567 45 HCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 45 ~~d~nevl~al~~eagw~ve~ 65 (324)
..|..++.+.|.++.|..|-+
T Consensus 325 ~~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 325 GVDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp TCCHHHHHHHHHHHHCEECBC
T ss_pred CCCHHHHHHHHHHhCCEEEec
Confidence 345568888888888988864
No 22
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=32.15 E-value=35 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 18 RRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 18 ~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
+++++|++|...-..=+..+|--.+ . ++.+|++||.- -||.|+.
T Consensus 20 r~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agvs---~~t~Y~~ 63 (214)
T 2zb9_A 20 PAEEVRAEVLHAVGELLLTEGTAQL----T----FERVARVSGVS---KTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGC----C----HHHHHHHHCCC---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccC----C----HHHHHHHHCCC---HHHHHHH
Confidence 4566677776655555566653222 1 45567777754 3677774
No 23
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=31.01 E-value=70 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred CCCCcCChHHHHHHHHHhcCceECC
Q 020567 41 KLPKHCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 41 ~lp~~~d~nevl~al~~eagw~ve~ 65 (324)
.+|...|..++.+.|++++|..|.+
T Consensus 342 ~~~~~~~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 342 ETPPGYDSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEE
T ss_pred eCCCCCCHHHHHHHHHHHCCEEEeC
Confidence 4555456678888988889988854
No 24
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.82 E-value=49 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++++.+|++|...-..=+..+|--++- ++.+|++||. .-||.|+.
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~~ 54 (203)
T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETS--------MDAIAAKAEI---SKPMLYLY 54 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHTTS---CHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCccccc--------HHHHHHHhCC---chHHHHHH
Confidence 445666777777666777777743332 5566778886 45777774
No 25
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=30.29 E-value=75 Score=24.68 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
++.+++|++|...-..=+..+| |++- ++.+|++||.- -||.|+
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G-~~~t--------~~~IA~~agvs---~~tlY~ 51 (196)
T 2qwt_A 9 ADAARNRARVLEVAYDTFAAEG-LGVP--------MDEIARRAGVG---AGTVYR 51 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-TTSC--------HHHHHHHTTSC---HHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhcC-CCCC--------HHHHHHHhCCC---HHHHHH
Confidence 3445666777666666667778 5543 33445555542 345555
No 26
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=29.18 E-value=56 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
.++++++|++|...-..=+..+| |. ... ++.+|++||. .-||.|+
T Consensus 7 ~~~~~~~r~~Il~aa~~l~~~~G-~~---~~t----~~~Ia~~agv---s~~t~Y~ 51 (202)
T 3lwj_A 7 EKQNKERRQKILTCSLDLFIEKG-YY---NTS----IRDIIALSEV---GTGTFYN 51 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHC-TT---TCC----HHHHHHHHCS---CHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcC-cc---cCC----HHHHHHHhCC---CchhHHH
Confidence 34566777777666555566666 32 222 4556778886 3466666
No 27
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=27.86 E-value=81 Score=23.96 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 15 NNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 15 nnk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
..++++++|++|......=+..+|--++- ++.+|++||. .-||.|+
T Consensus 8 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~ 53 (220)
T 3lhq_A 8 TKQQALETRQHILDVALRLFSQQGVSATS--------LAEIANAAGV---TRGAIYW 53 (220)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHCSTTCC--------HHHHHHHHTC---CHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcccCC--------HHHHHHHhCC---Cceeehh
Confidence 34456667777766666666666633322 4445666664 3456665
No 28
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.70 E-value=54 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
.++++++|++|......=+..+|--.+ . ++.+|++||. --||.|+
T Consensus 26 ~~~~~~~r~~Il~aa~~l~~~~G~~~~----t----v~~Ia~~agv---s~~t~Y~ 70 (218)
T 3dcf_A 26 GRTGNDRRTQIIKVATELFREKGYYAT----S----LDDIADRIGF---TKPAIYY 70 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTC---CHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHcCcccC----c----HHHHHHHhCC---CHHHHHH
Confidence 344556677776666666666663222 2 4556777775 3466666
No 29
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=26.62 E-value=75 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
.++++++|++|...-..=+..+|--. .. ++.+|++||. .-|+.|+
T Consensus 21 ~~~~~~~r~~Il~aA~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~ 65 (217)
T 3mvp_A 21 QERSIEKRNKILQVAKDLFSDKTYFN----VT----TNEIAKKADV---SVGTLYA 65 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCGGG----CC----HHHHHHHHTS---CHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHcCccc----cC----HHHHHHHhCC---ChhHHHH
Confidence 34566777777666666666666222 22 4556777775 3466666
No 30
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=26.56 E-value=76 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 18 RRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 18 ~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++|.+|++|...-..=+..+|--++ . ++.+|++||. .-||.|+.
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agv---s~~tlY~~ 53 (217)
T 3nrg_A 10 LPEEKRSRLIDVLLDEFAQNDYDSV----S----INRITERAGI---AKGSFYQY 53 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCGGGC----C----HHHHHHHHTC---CTTGGGGT
T ss_pred ChHHHHHHHHHHHHHHHHhcCcccC----C----HHHHHHHhCC---cHHHHHHH
Confidence 4566777776666666666663222 2 5667889996 46888884
No 31
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=26.38 E-value=1.2e+02 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC
Q 020567 18 RRERRRRAIAAKIFAGLRMYGNYKLP 43 (324)
Q Consensus 18 ~RERrRRaiaakI~~Glr~~gny~lp 43 (324)
.+.+||++++.++..+|+..| +.++
T Consensus 247 ~~~~~~~~~~~~~~~~L~~~~-~~~~ 271 (367)
T 3nyt_A 247 EEIALRQKVAAEYDLSLKQVG-IGTP 271 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHHHHHhccCC-eecc
Confidence 445667788888889998875 5554
No 32
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.37 E-value=72 Score=24.90 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 19 RERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 19 RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++++|++|...-..=+..+| |. ... ++.+|++||. .-||.|+.
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G-~~---~~t----v~~IA~~agv---s~~t~Y~~ 68 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREG-AR---GLT----FRAVDVEANV---PKGTASNY 68 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTC-TT---TCC----HHHHHHHSSS---TTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhC-hh---hcc----HHHHHHHcCC---CcchHHHh
Confidence 34456666555555555555 32 222 5566888886 56888884
No 33
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.90 E-value=80 Score=24.13 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++++++|++|-..-..=+..+|--++ . ++.+|++||. --||.|+.
T Consensus 14 ~~~~~~r~~Il~aa~~l~~~~G~~~~----s----~~~Ia~~agv---s~~t~Y~~ 58 (212)
T 1pb6_A 14 RAVSAKKKAILSAALDTFSQFGFHGT----R----LEQIAELAGV---SKTNLLYY 58 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTTC----C----HHHHHHHTTS---CHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCcchh----h----HHHHHHHHCC---ChhHHHHh
Confidence 44566667776665555666663222 1 4555777775 34666663
No 34
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=25.73 E-value=62 Score=24.56 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 16 NKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 16 nk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
+.+++++|++|...-..=+..+|--.+ . ++.+|++||.- -|+.|+
T Consensus 3 ~~~~~~~r~~Il~aA~~l~~~~G~~~~----t----~~~IA~~Agvs---~~tly~ 47 (194)
T 3dpj_A 3 AMVQAQTRDQIVAAADELFYRQGFAQT----S----FVDISAAVGIS---RGNFYY 47 (194)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHCTTTC----C----HHHHHHHHTCC---HHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHcCcccC----C----HHHHHHHHCCC---hHHHHH
Confidence 456777788887666666667663332 2 44556777753 366666
No 35
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=24.75 E-value=73 Score=30.07 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCC----------CcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 23 RRAIAAKIFAGLRMYGNYKLP----------KHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 23 RRaiaakI~~Glr~~gny~lp----------~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
|.+|+..||.|.-.-.+-.+| ..--+-|--|+|.+||||....||-..+
T Consensus 297 r~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~kAk~LL~eAG~~~~~dG~~~~ 355 (528)
T 3ry3_A 297 RQLLADQIMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGTREK 355 (528)
T ss_dssp HHHHHHHHSTTCEEECSSTTTTSTTSCTTCCCCCSCHHHHHHHHHHTTCEECTTSSEEE
T ss_pred HHHHHHHHhcCccccccCCCCCCCCCCCCcCcCCCCHHHHHHHHHHcCCccCCCCEEcc
Confidence 666777888775432221122 1111236678899999998887876543
No 36
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=23.48 E-value=1.6e+02 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCceECCCCccccc
Q 020567 49 NEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 49 nevl~al~~eagw~ve~dgttyr~ 72 (324)
.+.+..+|+++|..|-+.|..|-.
T Consensus 357 ~~~~~~~l~~~gv~v~~~g~~~~~ 380 (423)
T 3ez1_A 357 ADRVVKLAEAAGVSLTPAGATYPA 380 (423)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSST
T ss_pred HHHHHHHHHHCCcEEecCcccccC
Confidence 345566778999999887777753
No 37
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=23.46 E-value=1e+02 Score=25.70 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCC-------------cC--ChHHHHHHHHHhcCceECC
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPK-------------HC--DNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~-------------~~--d~nevl~al~~eagw~ve~ 65 (324)
+++.++.++.+.+++.+|+++.++++.. .. |..++.++|.++ |..|-+
T Consensus 265 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~ 327 (362)
T 3ffr_A 265 DGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPF-DMAVGA 327 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGG-TEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHC-CeEEec
Confidence 3444555667777788887773333221 00 566787777766 988864
No 38
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=22.64 E-value=29 Score=26.14 Aligned_cols=12 Identities=33% Similarity=1.113 Sum_probs=10.2
Q ss_pred HHHHHhcCceEC
Q 020567 53 KALCNEAGWTVE 64 (324)
Q Consensus 53 ~al~~eagw~ve 64 (324)
+..|++.||+|-
T Consensus 35 ~~YC~~kGwIiP 46 (60)
T 1ng7_A 35 RDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHCCceec
Confidence 467999999994
No 39
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=22.63 E-value=96 Score=28.96 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCc----------------CChHHHHHHHHHhcCceE
Q 020567 14 ENNKRRERRRRAIAAKIFAGLRMYGNYKLPKH----------------CDNNEVLKALCNEAGWTV 63 (324)
Q Consensus 14 Ennk~RERrRRaiaakI~~Glr~~gny~lp~~----------------~d~nevl~al~~eagw~v 63 (324)
|.-+.+-++..+.+.++..+|+++|++.+-.. .+..+|.++ +.+.||+|
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~-L~~~Gi~v 402 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDM-LRRYGWIV 402 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHH-HHTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHH-HHhCCcEE
Confidence 33345556667788899999999987654211 111255544 46789988
No 40
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.88 E-value=33 Score=27.17 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCce
Q 020567 25 AIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWT 62 (324)
Q Consensus 25 aiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ 62 (324)
.|-++|-.-|..-|+|. ..+++|+....|-||.
T Consensus 7 ~lk~~I~~~LveSGe~e-----rL~~lL~~rL~EcGW~ 39 (96)
T 3mhs_B 7 QLKSQIQQYLVESGNYE-----LISNELKARLLQEGWV 39 (96)
T ss_dssp HHHHHHHHHHHHTTHHH-----HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHCCcHH-----HHHHHHHHHHHHCCcH
Confidence 47888999999999986 6889999999999996
No 41
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=21.80 E-value=40 Score=31.33 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcC----------ChHHHHHHHHHhcCc
Q 020567 23 RRAIAAKIFAGLRMYGNYKLPKHC----------DNNEVLKALCNEAGW 61 (324)
Q Consensus 23 RRaiaakI~~Glr~~gny~lp~~~----------d~nevl~al~~eagw 61 (324)
|.+|+..||.|.-.-.+.-+|... -+-|--|+|.+||||
T Consensus 315 r~~i~~~~~~g~~~pa~~~~p~~~~~~~~~~~~~~d~~kAk~LL~eAG~ 363 (529)
T 4gl8_A 315 RKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGY 363 (529)
T ss_dssp HHHHHHHTTCSCCEECSCSSCCBTTBCCCCCCCSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCceeCccCCCCCCCccccccccccCHHHHHHHHHHhhh
Confidence 344556667765544444444221 123667899999999
No 42
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=21.74 E-value=1.4e+02 Score=22.46 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++++.+|++|...-..=+..+|--.+ . ++.+|++||. .-||.|+.
T Consensus 3 ~~~~~~r~~Il~aa~~l~~~~G~~~~----t----~~~IA~~agv---s~~t~Y~~ 47 (199)
T 3qbm_A 3 RKGQETRERVVAQAAALFNVSGYAGT----A----ISDIMAATGL---EKGGIYRH 47 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTC----C----HHHHHHHHTC---CHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHhCcCcC----C----HHHHHHHhCC---CccHHHHh
Confidence 45677777777766666777763322 2 4555667776 34666663
No 43
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=21.60 E-value=52 Score=27.44 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCceECCCC
Q 020567 50 EVLKALCNEAGWTVEPDG 67 (324)
Q Consensus 50 evl~al~~eagw~ve~dg 67 (324)
|--|+|.+||||....||
T Consensus 103 ~kAk~LL~eaG~~~~~~g 120 (259)
T 3pam_A 103 QKAWKLLQEAGFTKKNNR 120 (259)
T ss_dssp HHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCccCCCc
Confidence 677899999999876554
No 44
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=21.29 E-value=1.7e+02 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHhcCceECC
Q 020567 47 DNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 47 d~nevl~al~~eagw~ve~ 65 (324)
|..++.+.|.+++|..|.+
T Consensus 316 ~~~~~~~~l~~~~gi~v~~ 334 (370)
T 2z61_A 316 DGREFAYKLLKEKFVALTP 334 (370)
T ss_dssp CHHHHHHHHHHHHCEECEE
T ss_pred CHHHHHHHHHHhCCEEEeC
Confidence 6678888888889988864
No 45
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=21.04 E-value=1.6e+02 Score=25.16 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHhcCceECCCCccc
Q 020567 46 CDNNEVLKALCNEAGWTVEPDGTTY 70 (324)
Q Consensus 46 ~d~nevl~al~~eagw~ve~dgtty 70 (324)
.+..++.+.|.+++|..|.+ |..|
T Consensus 349 ~~~~~~~~~l~~~~gi~v~~-g~~~ 372 (407)
T 3nra_A 349 VAPAEFVKILRLQAGVVVTP-GTEF 372 (407)
T ss_dssp SCHHHHHHHHHHHHCEECEE-GGGT
T ss_pred CCHHHHHHHHHHhCCEEEeC-chhh
Confidence 35568888888899988865 4443
No 46
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.95 E-value=67 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 19 RERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 19 RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
++++|++|...-..=+..+|--. .. ++.+|++||.- -||.|+.
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~----~t----~~~IA~~aGvs---~~t~Y~~ 70 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSS----VG----VDEILKAARVP---KGSFYHY 70 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTT----CC----HHHHHHHHTCC---HHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCc----Cc----HHHHHHHhCCC---cchhhhh
Confidence 45556667655555556665322 22 44556677753 3666663
No 47
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=20.71 E-value=1.6e+02 Score=25.47 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCC
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYK 41 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~ 41 (324)
++..+|+++++.++..+|+.. ++.
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~-g~~ 291 (391)
T 3dr4_A 268 DEHLAARERVVGWYEQKLARL-GNR 291 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhcC-Ccc
Confidence 345566777888888888876 444
No 48
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=20.63 E-value=1e+02 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 14 ENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 14 Ennk~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
...++++.+|++|......=+..+|--.+ . ++.+|++||.- -||.|+.
T Consensus 39 ~~~~~~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~aGvs---~~t~Y~~ 86 (245)
T 3aqt_A 39 RRAQKREQTRARLITSARTLMAERGVDNV----G----IAEITEGANIG---TGTFYNY 86 (245)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHCGGGC----C----HHHHHHHTTSC---GGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccC----c----HHHHHHHhCCC---hHHHHHH
Confidence 34566677777776666655666652221 1 55667788854 4777774
No 49
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=20.58 E-value=1.7e+02 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHhcCceECCCCccc
Q 020567 47 DNNEVLKALCNEAGWTVEPDGTTY 70 (324)
Q Consensus 47 d~nevl~al~~eagw~ve~dgtty 70 (324)
|..++.+.|++++|..|-+ |..|
T Consensus 343 ~~~~~~~~l~~~~gi~v~~-g~~f 365 (412)
T 2x5d_A 343 GSLEFAKKLLQDAKVSVSP-GIGF 365 (412)
T ss_dssp CHHHHHHHHHHHHCEECEE-GGGG
T ss_pred CHHHHHHHHHHHCCEEEeC-chhh
Confidence 5678888888889988853 4333
No 50
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=20.51 E-value=1.3e+02 Score=22.42 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCccccc
Q 020567 18 RRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 72 (324)
Q Consensus 18 ~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr~ 72 (324)
+++++|++|...-..=+..+|--++ . ++.+|++||. .-||.|+.
T Consensus 5 ~~~~~r~~Il~aa~~l~~~~G~~~~----t----i~~Ia~~agv---s~~t~Y~~ 48 (188)
T 3qkx_A 5 AKTDLAEQIFSATDRLMAREGLNQL----S----MLKLAKEANV---AAGTIYLY 48 (188)
T ss_dssp THHHHHHHHHHHHHHHHHHSCSTTC----C----HHHHHHHHTC---CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhcCcccC----C----HHHHHHHhCC---CcchHHHH
Confidence 4566777777666666666663332 2 5566788886 35777874
No 51
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=20.42 E-value=1.1e+02 Score=28.77 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCce-ECCCCcccccC
Q 020567 50 EVLKALCNEAGWT-VEPDGTTYRKG 73 (324)
Q Consensus 50 evl~al~~eagw~-ve~dgttyr~g 73 (324)
|--|+|.+||||. .+.||..+.+.
T Consensus 324 ~kAk~LL~eAG~~~~~~dG~~~~~~ 348 (529)
T 1zu0_A 324 EGSKKLLAKAGFKDVNGDGFVETPS 348 (529)
T ss_dssp HHHHHHHHHTTCBCCSSSSSCBCTT
T ss_pred HHHHHHHHHcCCeEECCCceEECCC
Confidence 4457899999997 67777555543
No 52
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=20.40 E-value=1.4e+02 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCC-------------CCcCChHHHHHHHHHhcCceECC
Q 020567 19 RERRRRAIAAKIFAGLRMYGNYKL-------------PKHCDNNEVLKALCNEAGWTVEP 65 (324)
Q Consensus 19 RERrRRaiaakI~~Glr~~gny~l-------------p~~~d~nevl~al~~eagw~ve~ 65 (324)
+.++.++.+.++...|+++| +.+ +...|..+|.+.|.+++|..|.+
T Consensus 279 ~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~ 337 (376)
T 3f0h_A 279 EVARIASQAADFRAKIKDLP-FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICP 337 (376)
T ss_dssp HHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEE
T ss_pred HHHHHHHHHHHHHHHHHHcC-CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEec
Confidence 34445566777777787765 221 22345678888888777988854
No 53
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.19 E-value=69 Score=24.09 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcCChHHHHHHHHHhcCceECCCCcccc
Q 020567 17 KRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYR 71 (324)
Q Consensus 17 k~RERrRRaiaakI~~Glr~~gny~lp~~~d~nevl~al~~eagw~ve~dgttyr 71 (324)
..|+.+|++|...-..=+..+|--+ .. ++.+|++||.- -||.|+
T Consensus 4 ~~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agvs---~~t~Y~ 47 (206)
T 3dew_A 4 MTRADCRSRLMEVATELFAQKGFYG----VS----IRELAQAAGAS---ISMISY 47 (206)
T ss_dssp ----CHHHHHHHHHHHHHHHHCGGG----CC----HHHHHHHHTCC---HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCccc----Cc----HHHHHHHhCCC---HHHHHH
Confidence 3455566666655555556665212 12 45556777753 466666
Done!