Query 020569
Match_columns 324
No_of_seqs 273 out of 1770
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.9E-20 4.1E-25 176.9 8.4 83 210-321 203-286 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 3.5E-16 7.6E-21 106.0 2.3 44 266-309 1-44 (44)
3 COG5540 RING-finger-containing 99.4 1.3E-13 2.8E-18 126.4 4.1 51 264-314 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.4 3.3E-13 7.2E-18 101.4 3.9 45 265-309 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.3 1.3E-12 2.9E-17 122.7 7.0 57 258-314 280-346 (491)
6 PHA02929 N1R/p28-like protein; 99.3 1E-12 2.3E-17 119.4 5.5 50 264-313 173-227 (238)
7 PLN03208 E3 ubiquitin-protein 99.0 1.9E-10 4.1E-15 100.9 5.0 52 261-315 14-81 (193)
8 cd00162 RING RING-finger (Real 99.0 1.7E-10 3.7E-15 76.9 3.5 44 267-312 1-45 (45)
9 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.7E-10 5.7E-15 79.2 3.1 47 264-313 1-48 (50)
10 KOG0317 Predicted E3 ubiquitin 99.0 4E-10 8.7E-15 103.4 4.4 56 258-316 232-287 (293)
11 PF12861 zf-Apc11: Anaphase-pr 99.0 4.7E-10 1E-14 85.6 3.6 51 264-314 20-83 (85)
12 KOG0802 E3 ubiquitin ligase [P 98.9 3E-10 6.4E-15 115.8 2.5 58 260-317 286-345 (543)
13 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.1E-10 1.3E-14 73.3 3.0 39 268-308 1-39 (39)
14 KOG0823 Predicted E3 ubiquitin 98.8 2.8E-09 6E-14 95.3 4.9 50 262-314 44-96 (230)
15 PF14634 zf-RING_5: zinc-RING 98.8 5.2E-09 1.1E-13 70.7 3.0 44 267-310 1-44 (44)
16 PHA02926 zinc finger-like prot 98.7 4.9E-09 1.1E-13 93.1 3.1 50 264-313 169-230 (242)
17 smart00184 RING Ring finger. E 98.7 7.7E-09 1.7E-13 66.4 3.3 38 268-308 1-39 (39)
18 PF00097 zf-C3HC4: Zinc finger 98.7 6.2E-09 1.3E-13 69.0 2.2 39 268-308 1-41 (41)
19 KOG0828 Predicted E3 ubiquitin 98.7 2.1E-08 4.5E-13 97.7 5.9 50 265-314 571-635 (636)
20 KOG0320 Predicted E3 ubiquitin 98.7 1.2E-08 2.6E-13 87.7 2.5 51 264-315 130-180 (187)
21 smart00744 RINGv The RING-vari 98.6 2.9E-08 6.2E-13 68.7 3.1 42 267-309 1-49 (49)
22 smart00504 Ubox Modified RING 98.6 5.1E-08 1.1E-12 70.5 4.1 47 266-315 2-48 (63)
23 COG5194 APC11 Component of SCF 98.6 3.8E-08 8.3E-13 73.5 3.4 50 266-315 21-83 (88)
24 KOG1734 Predicted RING-contain 98.6 1.3E-08 2.8E-13 92.5 0.9 53 263-315 222-283 (328)
25 PF15227 zf-C3HC4_4: zinc fing 98.6 3.5E-08 7.5E-13 66.1 2.6 38 268-308 1-42 (42)
26 KOG2930 SCF ubiquitin ligase, 98.5 6.8E-08 1.5E-12 75.6 1.7 50 264-313 45-108 (114)
27 KOG1493 Anaphase-promoting com 98.4 4.5E-08 9.9E-13 72.4 0.4 49 265-313 20-81 (84)
28 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.7E-12 92.2 3.3 49 264-315 25-73 (397)
29 KOG0804 Cytoplasmic Zn-finger 98.2 6E-07 1.3E-11 87.0 2.7 52 260-313 170-222 (493)
30 PF13445 zf-RING_UBOX: RING-ty 98.2 1E-06 2.2E-11 59.2 2.7 38 268-306 1-43 (43)
31 COG5574 PEX10 RING-finger-cont 98.1 1.7E-06 3.8E-11 78.8 3.5 52 263-317 213-266 (271)
32 TIGR00570 cdk7 CDK-activating 98.0 4.3E-06 9.3E-11 78.7 3.5 53 264-316 2-57 (309)
33 PF11793 FANCL_C: FANCL C-term 98.0 1.7E-06 3.6E-11 64.4 0.5 49 266-314 3-67 (70)
34 COG5219 Uncharacterized conser 98.0 1.8E-06 3.9E-11 89.9 0.6 51 263-313 1467-1523(1525)
35 KOG0827 Predicted E3 ubiquitin 97.9 3.7E-06 8E-11 80.2 1.8 45 265-309 4-52 (465)
36 PF04564 U-box: U-box domain; 97.9 7.2E-06 1.6E-10 61.4 2.2 48 265-315 4-52 (73)
37 KOG4265 Predicted E3 ubiquitin 97.8 1.8E-05 3.9E-10 75.2 4.1 50 263-315 288-338 (349)
38 KOG4445 Uncharacterized conser 97.8 6.2E-06 1.3E-10 76.3 0.7 51 266-316 116-189 (368)
39 KOG2177 Predicted E3 ubiquitin 97.8 8.9E-06 1.9E-10 74.8 1.4 45 263-310 11-55 (386)
40 KOG0287 Postreplication repair 97.7 1.1E-05 2.4E-10 75.8 1.4 48 266-316 24-71 (442)
41 KOG2164 Predicted E3 ubiquitin 97.7 1.8E-05 3.8E-10 78.3 2.8 48 265-315 186-238 (513)
42 KOG0825 PHD Zn-finger protein 97.7 8.6E-06 1.9E-10 83.5 -0.5 50 265-314 123-172 (1134)
43 KOG1039 Predicted E3 ubiquitin 97.6 2.6E-05 5.5E-10 74.9 1.9 51 263-313 159-221 (344)
44 COG5432 RAD18 RING-finger-cont 97.5 4.7E-05 1E-09 70.3 2.3 46 266-314 26-71 (391)
45 KOG1645 RING-finger-containing 97.5 7E-05 1.5E-09 72.1 3.1 47 265-311 4-54 (463)
46 KOG1941 Acetylcholine receptor 97.1 0.00014 3.1E-09 69.6 0.9 48 265-312 365-415 (518)
47 KOG0824 Predicted E3 ubiquitin 97.1 0.00022 4.9E-09 66.3 2.1 49 264-315 6-55 (324)
48 KOG0311 Predicted E3 ubiquitin 97.1 7.6E-05 1.6E-09 70.7 -1.1 52 264-318 42-95 (381)
49 PF05883 Baculo_RING: Baculovi 97.0 0.0003 6.4E-09 58.4 1.8 38 265-302 26-69 (134)
50 PF12906 RINGv: RING-variant d 96.9 0.00057 1.2E-08 46.7 2.1 40 268-308 1-47 (47)
51 PF14835 zf-RING_6: zf-RING of 96.9 0.00024 5.2E-09 51.4 0.2 49 266-318 8-56 (65)
52 PHA02862 5L protein; Provision 96.9 0.0006 1.3E-08 57.0 2.5 45 266-314 3-54 (156)
53 KOG4172 Predicted E3 ubiquitin 96.9 0.0002 4.2E-09 49.9 -0.4 45 266-313 8-54 (62)
54 KOG4159 Predicted E3 ubiquitin 96.7 0.00098 2.1E-08 65.3 2.3 52 263-317 82-133 (398)
55 KOG1785 Tyrosine kinase negati 96.6 0.00091 2E-08 64.4 1.4 46 266-314 370-417 (563)
56 KOG0297 TNF receptor-associate 96.5 0.0012 2.6E-08 65.0 2.1 54 262-317 18-71 (391)
57 PF11789 zf-Nse: Zinc-finger o 96.5 0.0014 3.1E-08 46.7 1.6 41 265-307 11-53 (57)
58 KOG1428 Inhibitor of type V ad 96.4 0.0022 4.8E-08 70.0 3.1 53 262-314 3483-3545(3738)
59 KOG3970 Predicted E3 ubiquitin 96.4 0.003 6.5E-08 56.6 3.3 54 264-318 49-110 (299)
60 KOG0801 Predicted E3 ubiquitin 96.3 0.0012 2.6E-08 56.2 0.5 37 257-293 169-205 (205)
61 PHA02825 LAP/PHD finger-like p 96.3 0.003 6.6E-08 53.8 2.8 50 262-315 5-61 (162)
62 KOG1814 Predicted E3 ubiquitin 95.7 0.0056 1.2E-07 59.4 2.0 47 265-311 184-238 (445)
63 KOG1002 Nucleotide excision re 95.5 0.0056 1.2E-07 61.0 1.2 54 264-320 535-593 (791)
64 PF10367 Vps39_2: Vacuolar sor 95.4 0.007 1.5E-07 47.9 1.3 33 263-296 76-108 (109)
65 KOG0978 E3 ubiquitin ligase in 95.3 0.0051 1.1E-07 63.9 0.4 49 266-317 644-693 (698)
66 PHA03096 p28-like protein; Pro 95.0 0.012 2.6E-07 55.4 1.7 36 266-301 179-219 (284)
67 PF14570 zf-RING_4: RING/Ubox 95.0 0.012 2.7E-07 40.3 1.3 44 268-312 1-47 (48)
68 KOG1952 Transcription factor N 94.9 0.011 2.4E-07 61.9 1.4 54 260-313 186-247 (950)
69 COG5152 Uncharacterized conser 94.8 0.01 2.2E-07 52.3 0.8 43 266-311 197-239 (259)
70 KOG0827 Predicted E3 ubiquitin 94.6 0.0023 5E-08 61.5 -4.2 51 266-316 197-248 (465)
71 KOG2660 Locus-specific chromos 94.5 0.012 2.5E-07 55.8 0.2 50 264-315 14-63 (331)
72 KOG1813 Predicted E3 ubiquitin 94.3 0.015 3.3E-07 54.2 0.6 46 266-314 242-287 (313)
73 KOG1609 Protein involved in mR 94.2 0.036 7.8E-07 52.3 2.9 51 265-315 78-136 (323)
74 KOG1571 Predicted E3 ubiquitin 93.6 0.052 1.1E-06 52.1 2.9 45 264-314 304-348 (355)
75 KOG2879 Predicted E3 ubiquitin 93.6 0.1 2.2E-06 48.3 4.6 50 262-313 236-287 (298)
76 KOG3039 Uncharacterized conser 93.6 0.069 1.5E-06 48.7 3.4 53 264-316 220-273 (303)
77 COG5222 Uncharacterized conser 92.8 0.052 1.1E-06 50.7 1.4 46 266-314 275-323 (427)
78 KOG4692 Predicted E3 ubiquitin 92.8 0.065 1.4E-06 51.2 2.1 48 263-313 420-467 (489)
79 KOG3268 Predicted E3 ubiquitin 92.2 0.091 2E-06 45.7 2.1 51 266-316 166-231 (234)
80 PF07800 DUF1644: Protein of u 92.1 0.15 3.3E-06 43.6 3.3 37 264-300 1-47 (162)
81 KOG1940 Zn-finger protein [Gen 92.0 0.084 1.8E-06 49.3 1.7 45 266-310 159-204 (276)
82 PF03854 zf-P11: P-11 zinc fin 91.9 0.062 1.4E-06 36.5 0.6 33 283-315 15-48 (50)
83 KOG0826 Predicted E3 ubiquitin 91.7 0.31 6.8E-06 46.3 5.3 50 260-312 295-345 (357)
84 KOG4185 Predicted E3 ubiquitin 91.1 0.12 2.6E-06 48.7 1.9 47 266-312 4-54 (296)
85 COG5183 SSM4 Protein involved 90.3 0.23 5E-06 52.2 3.2 54 262-316 9-69 (1175)
86 KOG2932 E3 ubiquitin ligase in 90.1 0.1 2.2E-06 49.1 0.4 44 267-314 92-135 (389)
87 KOG0802 E3 ubiquitin ligase [P 89.8 0.17 3.7E-06 52.0 1.8 51 260-317 474-524 (543)
88 PF11023 DUF2614: Protein of u 89.8 2.8 6.1E-05 33.8 8.3 26 297-322 80-105 (114)
89 KOG4275 Predicted E3 ubiquitin 89.6 0.079 1.7E-06 49.5 -0.8 43 265-314 300-343 (350)
90 PF14447 Prok-RING_4: Prokaryo 89.5 0.21 4.5E-06 35.2 1.4 46 266-316 8-53 (55)
91 PF08746 zf-RING-like: RING-li 89.4 0.15 3.3E-06 34.0 0.7 41 268-308 1-43 (43)
92 KOG2034 Vacuolar sorting prote 88.0 0.25 5.3E-06 52.6 1.5 36 263-299 815-850 (911)
93 KOG1100 Predicted E3 ubiquitin 87.4 0.38 8.2E-06 43.3 2.2 39 268-313 161-200 (207)
94 KOG3161 Predicted E3 ubiquitin 87.2 0.17 3.7E-06 51.9 -0.2 44 266-312 12-56 (861)
95 COG5236 Uncharacterized conser 87.1 0.94 2E-05 43.4 4.6 47 262-311 58-106 (493)
96 KOG2114 Vacuolar assembly/sort 86.7 0.34 7.4E-06 51.3 1.7 42 266-312 841-882 (933)
97 PF04641 Rtf2: Rtf2 RING-finge 85.4 1.1 2.4E-05 41.6 4.2 52 263-315 111-163 (260)
98 PF10272 Tmpp129: Putative tra 85.4 1.7 3.7E-05 42.3 5.6 29 286-314 311-352 (358)
99 KOG1001 Helicase-like transcri 84.9 0.41 8.8E-06 50.4 1.2 46 266-315 455-502 (674)
100 PF14446 Prok-RING_1: Prokaryo 84.5 1.2 2.6E-05 31.3 3.0 43 265-311 5-50 (54)
101 KOG4362 Transcriptional regula 83.6 0.29 6.3E-06 51.0 -0.5 49 266-317 22-73 (684)
102 KOG0309 Conserved WD40 repeat- 83.5 0.64 1.4E-05 48.7 1.9 24 284-307 1046-1069(1081)
103 KOG0298 DEAD box-containing he 83.4 0.38 8.2E-06 53.1 0.2 47 265-313 1153-1199(1394)
104 PRK02935 hypothetical protein; 82.0 12 0.00025 30.0 7.9 26 297-322 81-106 (110)
105 COG5175 MOT2 Transcriptional r 81.9 1 2.2E-05 43.1 2.4 52 263-314 12-65 (480)
106 KOG3005 GIY-YIG type nuclease 79.2 1.3 2.9E-05 41.0 2.2 48 265-312 182-242 (276)
107 KOG3002 Zn finger protein [Gen 78.8 1.3 2.8E-05 42.1 2.1 44 264-314 47-92 (299)
108 KOG3053 Uncharacterized conser 76.8 1.1 2.4E-05 41.3 0.9 51 264-314 19-83 (293)
109 KOG1829 Uncharacterized conser 75.2 1 2.2E-05 46.4 0.3 42 265-309 511-557 (580)
110 KOG0825 PHD Zn-finger protein 73.7 2.3 5E-05 45.0 2.4 50 264-313 95-154 (1134)
111 KOG3899 Uncharacterized conser 71.1 2.3 5E-05 40.0 1.5 29 286-314 325-366 (381)
112 COG5220 TFB3 Cdk activating ki 69.8 1.8 3.8E-05 39.6 0.5 51 264-314 9-65 (314)
113 KOG4367 Predicted Zn-finger pr 68.5 2.5 5.5E-05 41.8 1.3 35 264-301 3-37 (699)
114 KOG2817 Predicted E3 ubiquitin 67.8 4.6 9.9E-05 39.5 2.9 45 266-310 335-382 (394)
115 KOG0269 WD40 repeat-containing 63.7 5.4 0.00012 42.1 2.6 41 265-307 779-820 (839)
116 KOG2066 Vacuolar assembly/sort 63.4 3.2 6.9E-05 44.0 1.0 43 265-308 784-830 (846)
117 PF13901 DUF4206: Domain of un 63.3 4.7 0.0001 36.1 1.9 39 266-310 153-197 (202)
118 PF05290 Baculo_IE-1: Baculovi 62.9 6.3 0.00014 32.9 2.4 50 266-318 81-137 (140)
119 PF02891 zf-MIZ: MIZ/SP-RING z 61.9 3 6.6E-05 28.7 0.3 42 267-311 4-50 (50)
120 KOG1815 Predicted E3 ubiquitin 58.1 5.7 0.00012 39.8 1.7 37 263-301 68-104 (444)
121 smart00249 PHD PHD zinc finger 57.5 6.5 0.00014 25.2 1.4 30 268-297 2-31 (47)
122 KOG1812 Predicted E3 ubiquitin 55.5 4.4 9.4E-05 39.9 0.4 37 265-301 146-183 (384)
123 smart00132 LIM Zinc-binding do 50.5 17 0.00037 22.3 2.5 36 268-312 2-37 (39)
124 COG5524 Bacteriorhodopsin [Gen 46.6 63 0.0014 30.5 6.4 102 18-152 104-213 (285)
125 KOG3800 Predicted E3 ubiquitin 46.2 17 0.00038 34.2 2.7 45 274-318 10-56 (300)
126 PF14169 YdjO: Cold-inducible 46.0 10 0.00022 27.2 0.9 15 302-316 39-53 (59)
127 PF05715 zf-piccolo: Piccolo Z 45.9 13 0.00029 26.5 1.5 17 302-318 2-18 (61)
128 PF04423 Rad50_zn_hook: Rad50 44.1 7.4 0.00016 26.9 -0.0 14 302-315 20-33 (54)
129 PF01102 Glycophorin_A: Glycop 43.8 37 0.0008 28.0 4.0 8 170-177 66-73 (122)
130 PF07975 C1_4: TFIIH C1-like d 43.1 20 0.00044 24.9 2.0 41 268-309 2-50 (51)
131 COG3671 Predicted membrane pro 42.9 60 0.0013 26.6 5.0 46 165-210 69-114 (125)
132 PF06667 PspB: Phage shock pro 42.4 64 0.0014 24.2 4.8 15 211-225 33-47 (75)
133 PHA02898 virion envelope prote 41.8 67 0.0015 24.9 4.8 39 47-85 30-70 (92)
134 PF00628 PHD: PHD-finger; Int 41.4 12 0.00026 25.1 0.7 43 268-310 2-50 (51)
135 PRK11827 hypothetical protein; 41.3 10 0.00022 27.2 0.3 20 296-315 2-21 (60)
136 KOG3842 Adaptor protein Pellin 41.2 33 0.00071 32.9 3.7 51 264-314 340-415 (429)
137 KOG4718 Non-SMC (structural ma 40.3 16 0.00034 33.0 1.4 42 265-308 181-222 (235)
138 KOG2041 WD40 repeat protein [G 39.9 70 0.0015 34.2 6.1 48 262-313 1128-1185(1189)
139 KOG2068 MOT2 transcription fac 39.4 26 0.00055 33.7 2.8 52 266-318 250-303 (327)
140 PF13717 zinc_ribbon_4: zinc-r 37.3 16 0.00035 23.2 0.7 26 266-291 3-36 (36)
141 PF07649 C1_3: C1-like domain; 36.8 25 0.00054 21.1 1.5 29 267-295 2-30 (30)
142 KOG1812 Predicted E3 ubiquitin 36.7 16 0.00035 36.0 1.0 46 265-310 306-353 (384)
143 PRK05978 hypothetical protein; 36.5 20 0.00044 30.5 1.4 27 286-317 39-67 (148)
144 KOG4739 Uncharacterized protei 35.2 21 0.00046 32.7 1.5 38 267-305 5-43 (233)
145 PF05478 Prominin: Prominin; 34.7 43 0.00092 36.3 3.9 28 166-197 90-117 (806)
146 PRK10633 hypothetical protein; 32.5 1.7E+02 0.0036 22.3 5.7 19 131-149 13-31 (80)
147 PF10571 UPF0547: Uncharacteri 32.3 22 0.00048 21.0 0.7 21 268-290 3-24 (26)
148 TIGR00622 ssl1 transcription f 32.0 54 0.0012 26.6 3.1 45 266-310 56-111 (112)
149 KOG3113 Uncharacterized conser 31.0 1.2E+02 0.0027 28.2 5.6 50 265-316 111-161 (293)
150 KOG1729 FYVE finger containing 30.7 9.7 0.00021 36.0 -1.5 38 266-303 215-252 (288)
151 PF03119 DNA_ligase_ZBD: NAD-d 29.8 21 0.00045 21.4 0.3 14 304-317 1-14 (28)
152 cd00350 rubredoxin_like Rubred 29.4 39 0.00085 20.9 1.5 10 301-310 16-25 (33)
153 PF02985 HEAT: HEAT repeat; I 29.2 32 0.00069 20.6 1.1 17 2-18 10-26 (31)
154 PF15431 TMEM190: Transmembran 29.1 52 0.0011 26.6 2.5 31 52-82 48-81 (134)
155 PF06844 DUF1244: Protein of u 27.7 36 0.00078 24.9 1.3 12 289-300 11-22 (68)
156 PRK13727 conjugal transfer pil 27.7 33 0.00072 25.6 1.1 22 24-49 32-53 (80)
157 COG5109 Uncharacterized conser 27.6 48 0.001 31.8 2.4 43 266-308 337-382 (396)
158 KOG2927 Membrane component of 27.3 1.5E+02 0.0032 29.0 5.7 29 58-87 186-214 (372)
159 TIGR02741 TraQ type-F conjugat 27.1 32 0.0007 25.6 1.0 22 24-49 32-53 (80)
160 PF00412 LIM: LIM domain; Int 26.6 59 0.0013 22.0 2.3 40 268-316 1-40 (58)
161 PF13832 zf-HC5HC2H_2: PHD-zin 25.8 64 0.0014 25.3 2.6 31 265-297 55-87 (110)
162 KOG3799 Rab3 effector RIM1 and 24.0 22 0.00048 29.8 -0.4 50 262-311 62-116 (169)
163 TIGR01294 P_lamban phospholamb 23.8 1.2E+02 0.0026 20.4 3.1 7 183-189 41-47 (52)
164 PF06677 Auto_anti-p27: Sjogre 23.4 56 0.0012 21.5 1.5 19 296-314 11-29 (41)
165 KOG4451 Uncharacterized conser 23.0 66 0.0014 29.4 2.4 22 301-322 262-283 (286)
166 PF04272 Phospholamban: Phosph 22.8 1.3E+02 0.0029 20.2 3.2 6 183-188 41-46 (52)
167 PF07191 zinc-ribbons_6: zinc- 22.2 9.1 0.0002 28.4 -2.7 40 266-313 2-41 (70)
168 PHA02680 ORF090 IMV phosphoryl 21.8 3.9E+02 0.0084 20.7 5.9 59 25-86 11-72 (91)
169 PF06814 Lung_7-TM_R: Lung sev 21.8 6.5E+02 0.014 23.3 10.0 61 27-87 45-106 (295)
170 smart00531 TFIIE Transcription 21.4 66 0.0014 27.0 2.0 19 302-320 123-141 (147)
171 PF14311 DUF4379: Domain of un 20.9 57 0.0012 22.5 1.3 22 286-308 34-55 (55)
172 COG2835 Uncharacterized conser 20.9 45 0.00098 23.9 0.7 15 303-317 9-23 (60)
173 PLN02189 cellulose synthase 20.8 97 0.0021 34.5 3.5 50 264-313 33-87 (1040)
174 KOG1245 Chromatin remodeling c 20.8 34 0.00074 39.4 0.1 51 262-312 1105-1159(1404)
175 PF10856 DUF2678: Protein of u 20.3 1.2E+02 0.0026 24.8 3.1 36 49-84 49-84 (118)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-20 Score=176.85 Aligned_cols=83 Identities=35% Similarity=0.747 Sum_probs=70.3
Q ss_pred hhcCCCHHHHhhcccceeeeccccccCCCCCCCCCCCcccccCCCCCCcccCCCCCcccccccccccCCCeeEEeCCCCc
Q 020569 210 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 289 (324)
Q Consensus 210 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~C~ICL~~y~~~~~lr~LpC~H~ 289 (324)
+.+++.++.++++|..+|+...+++. ...|+|||++|++||++|.|||+|.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~-----------------------------~~~CaIClEdY~~GdklRiLPC~H~ 253 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDA-----------------------------TDTCAICLEDYEKGDKLRILPCSHK 253 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCC-----------------------------CceEEEeecccccCCeeeEecCCCc
Confidence 45688999999999999987654321 1589999999999999999999999
Q ss_pred cchhhHHHHHhcCCC-CccccccccCCCCcccc
Q 020569 290 FHCACVDKWLYINAT-CPLCKYNILKSSSNQDR 321 (324)
Q Consensus 290 FH~~CId~WL~~~~t-CPlCR~~I~~~~~~~~~ 321 (324)
||..|||+||..+.+ ||+||+++.+....+..
T Consensus 254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~ 286 (348)
T KOG4628|consen 254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPV 286 (348)
T ss_pred hhhccchhhHhhcCccCCCCCCcCCCCCCCCCc
Confidence 999999999988755 99999999887665443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.60 E-value=3.5e-16 Score=105.98 Aligned_cols=44 Identities=48% Similarity=1.260 Sum_probs=40.9
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 309 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 309 (324)
++|+||+++|.+++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=126.44 Aligned_cols=51 Identities=45% Similarity=1.058 Sum_probs=47.5
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHh-cCCCCccccccccC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 314 (324)
.+-+|+|||++|-.+|.++.|||+|.||..|+++|+. .+..||+||.+|++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3479999999999999999999999999999999998 78999999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.38 E-value=3.3e-13 Score=101.38 Aligned_cols=45 Identities=44% Similarity=1.068 Sum_probs=36.8
Q ss_pred CcccccccccccC----------CCeeEEeCCCCccchhhHHHHHhcCCCCcccc
Q 020569 265 DAECCICLSAYDD----------GVELRELPCGHHFHCACVDKWLYINATCPLCK 309 (324)
Q Consensus 265 ~~~C~ICL~~y~~----------~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 309 (324)
++.|+||+++|.+ +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4569999999942 23456678999999999999999999999997
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-12 Score=122.67 Aligned_cols=57 Identities=35% Similarity=0.908 Sum_probs=47.6
Q ss_pred cccCCCCCccccccccc-ccCCC---------eeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 258 EHVLSNEDAECCICLSA-YDDGV---------ELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 258 e~~~~~e~~~C~ICL~~-y~~~~---------~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
++++..+|..|.||+++ |+.+. .-+.|||+|.||..|++.|++++++||+||.++.-
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 44556778899999999 55442 34789999999999999999999999999999543
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=1e-12 Score=119.39 Aligned_cols=50 Identities=34% Similarity=0.798 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCe----eEEe-CCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 264 EDAECCICLSAYDDGVE----LREL-PCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~----lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
.+.+|+||++.+.+++. +..+ +|+|.||.+||++|++.+.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34789999999876542 2344 69999999999999999999999999875
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=1.9e-10 Score=100.89 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=42.9
Q ss_pred CCCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc----------------CCCCccccccccCC
Q 020569 261 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----------------NATCPLCKYNILKS 315 (324)
Q Consensus 261 ~~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~ 315 (324)
...++.+|+||++.+++. ..++|+|.||..||.+|+.. ...||+||.++...
T Consensus 14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 344568999999998776 66899999999999999852 35799999998653
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.04 E-value=1.7e-10 Score=76.90 Aligned_cols=44 Identities=50% Similarity=1.112 Sum_probs=37.2
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhHHHHHhc-CCCCccccccc
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI 312 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I 312 (324)
+|+||++.+ .+....++|+|.||..|+++|++. +..||.||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 344555669999999999999997 78899999764
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.99 E-value=2.7e-10 Score=79.16 Aligned_cols=47 Identities=40% Similarity=0.875 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCc-cchhhHHHHHhcCCCCcccccccc
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
|+..|.||++...+ ...+||+|. |+.+|+++|++.+..||+||++|.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999998654 578899999 999999999999999999999885
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4e-10 Score=103.37 Aligned_cols=56 Identities=29% Similarity=0.733 Sum_probs=48.4
Q ss_pred cccCCCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 258 EHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 258 e~~~~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
+......+..|.+||+.-++. ..+||+|.|+..||..|...++.||+||....+++
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 334455668999999998777 68999999999999999999999999999887764
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.96 E-value=4.7e-10 Score=85.62 Aligned_cols=51 Identities=35% Similarity=0.769 Sum_probs=40.1
Q ss_pred CCccccccccccc--------CCC--eeEEeCCCCccchhhHHHHHhc---CCCCccccccccC
Q 020569 264 EDAECCICLSAYD--------DGV--ELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~--------~~~--~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~~ 314 (324)
+|+.|.||...|+ .+| .+..-.|+|.||..||.+|+.. +.+||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3678999999987 233 3333459999999999999985 5889999997654
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3e-10 Score=115.84 Aligned_cols=58 Identities=34% Similarity=0.781 Sum_probs=49.9
Q ss_pred cCCCCCcccccccccccCCCe--eEEeCCCCccchhhHHHHHhcCCCCccccccccCCCC
Q 020569 260 VLSNEDAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 317 (324)
Q Consensus 260 ~~~~e~~~C~ICL~~y~~~~~--lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 317 (324)
.....+..|.||++++..+++ .+.|||+|.||..|+.+|+++.++||.||..+..+..
T Consensus 286 ~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 286 GLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 355668899999999998765 7889999999999999999999999999996554433
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=6.1e-10 Score=73.28 Aligned_cols=39 Identities=44% Similarity=1.056 Sum_probs=34.0
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 308 (324)
|+||++.+.+ .+..++|+|.|+.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999887 55789999999999999999999999998
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.8e-09 Score=95.26 Aligned_cols=50 Identities=32% Similarity=0.714 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc---CCCCccccccccC
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILK 314 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~~ 314 (324)
....-+|.|||+.=+|. .++.|+|.|+..||.+||+. +..||+||..|..
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 44567999999997776 67889999999999999986 4669999998864
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=5.2e-09 Score=70.73 Aligned_cols=44 Identities=32% Similarity=0.773 Sum_probs=39.8
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccc
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
.|.||.++|.++...+.|+|+|.|+.+|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977778899999999999999999877789999985
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.75 E-value=4.9e-09 Score=93.13 Aligned_cols=50 Identities=26% Similarity=0.701 Sum_probs=37.8
Q ss_pred CCcccccccccccCC-----CeeEEe-CCCCccchhhHHHHHhcC------CCCcccccccc
Q 020569 264 EDAECCICLSAYDDG-----VELREL-PCGHHFHCACVDKWLYIN------ATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y~~~-----~~lr~L-pC~H~FH~~CId~WL~~~------~tCPlCR~~I~ 313 (324)
++.+|+|||+..-+. ..-..| +|+|.||..||++|.+.+ .+||+||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999886432 122345 499999999999999753 45999998764
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=7.7e-09 Score=66.38 Aligned_cols=38 Identities=50% Similarity=1.113 Sum_probs=33.1
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHh-cCCCCccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlC 308 (324)
|+||++. ......+||+|.||..|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899888 34568899999999999999998 67789987
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=6.2e-09 Score=69.01 Aligned_cols=39 Identities=51% Similarity=1.187 Sum_probs=34.8
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHh--cCCCCccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY--INATCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~--~~~tCPlC 308 (324)
|+||++.+.+.. +.++|+|.|+.+|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988874 6789999999999999999 56779998
No 19
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.1e-08 Score=97.71 Aligned_cols=50 Identities=28% Similarity=0.774 Sum_probs=40.3
Q ss_pred CcccccccccccCC---C-----------eeEEeCCCCccchhhHHHHHh-cCCCCccccccccC
Q 020569 265 DAECCICLSAYDDG---V-----------ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 314 (324)
Q Consensus 265 ~~~C~ICL~~y~~~---~-----------~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 314 (324)
..+|+||+.+.+-. . ....+||+|.||..|+..|+. .+-.||+||++++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 36899999987511 1 134579999999999999999 67799999999864
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.2e-08 Score=87.69 Aligned_cols=51 Identities=29% Similarity=0.661 Sum_probs=44.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
+-..|+|||+.|.+... .-+.|+|+|+++||+.-++....||+|++.|.++
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34789999999988754 3478999999999999999999999999987664
No 21
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.61 E-value=2.9e-08 Score=68.70 Aligned_cols=42 Identities=33% Similarity=0.786 Sum_probs=33.8
Q ss_pred ccccccccccCCCeeEEeCCC-----CccchhhHHHHHhc--CCCCcccc
Q 020569 267 ECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCK 309 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CId~WL~~--~~tCPlCR 309 (324)
.|-||++ .++++....+||+ |++|.+|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4445555689986 99999999999965 45899995
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=5.1e-08 Score=70.48 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=41.8
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
-.|+||.+.+++. ..+||+|.|...||.+|++.+.+||+|+.++...
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 3699999999986 5789999999999999999999999999988543
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.59 E-value=3.8e-08 Score=73.46 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=38.5
Q ss_pred cccccccccc-----------cCCCeeEEe--CCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 266 AECCICLSAY-----------DDGVELREL--PCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 266 ~~C~ICL~~y-----------~~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
+.|+||...| ..+++.... -|+|.||..||.+||..+..||++|+.-.-.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 4677766554 355555443 3999999999999999999999999876544
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-08 Score=92.45 Aligned_cols=53 Identities=32% Similarity=0.694 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCC-------eeEEeCCCCccchhhHHHHHh--cCCCCccccccccCC
Q 020569 263 NEDAECCICLSAYDDGV-------ELRELPCGHHFHCACVDKWLY--INATCPLCKYNILKS 315 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~-------~lr~LpC~H~FH~~CId~WL~--~~~tCPlCR~~I~~~ 315 (324)
.+|..|+||=..+...+ +...|.|||.||..||+.|-- ++++||.||..+.-+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45689999998887555 678899999999999999985 689999999877544
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.58 E-value=3.5e-08 Score=66.06 Aligned_cols=38 Identities=39% Similarity=0.989 Sum_probs=30.3
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhcC----CCCccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlC 308 (324)
|+||++-|++. ..|+|+|.|...||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 789999999999999999754 369988
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.8e-08 Score=75.59 Aligned_cols=50 Identities=28% Similarity=0.647 Sum_probs=37.6
Q ss_pred CCcccccccccc------------cCCCeeEEe--CCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 264 EDAECCICLSAY------------DDGVELREL--PCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y------------~~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
.-+.|+||..-+ ...++..+- -|+|.||-.||.+||+.++.||||.++-.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 346899997543 133444443 39999999999999999999999987543
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.5e-08 Score=72.44 Aligned_cols=49 Identities=35% Similarity=0.826 Sum_probs=37.2
Q ss_pred Cccccccccccc--------CCCeeE-Ee-CCCCccchhhHHHHHhc---CCCCcccccccc
Q 020569 265 DAECCICLSAYD--------DGVELR-EL-PCGHHFHCACVDKWLYI---NATCPLCKYNIL 313 (324)
Q Consensus 265 ~~~C~ICL~~y~--------~~~~lr-~L-pC~H~FH~~CId~WL~~---~~tCPlCR~~I~ 313 (324)
+.+|.||..+|+ .+|..- ++ .|.|.||..||.+|+.. ++.||+||+.-.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999999997 333322 22 39999999999999964 467999998654
No 28
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1.3e-07 Score=92.25 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=43.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
....|.||++.|.+. ..+||+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 457999999999776 4689999999999999999888999999988654
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.22 E-value=6e-07 Score=86.97 Aligned_cols=52 Identities=33% Similarity=0.885 Sum_probs=43.1
Q ss_pred cCCCCCcccccccccccCCC-eeEEeCCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 260 VLSNEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 260 ~~~~e~~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
....|-.+|++||+.+.+.. .++...|+|.||..|+.+|- ..+||+||+-..
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 44456789999999998764 45666799999999999996 789999998655
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.20 E-value=1e-06 Score=59.20 Aligned_cols=38 Identities=34% Similarity=0.728 Sum_probs=22.8
Q ss_pred cccccccccCCC-eeEEeCCCCccchhhHHHHHhcC----CCCc
Q 020569 268 CCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYIN----ATCP 306 (324)
Q Consensus 268 C~ICL~~y~~~~-~lr~LpC~H~FH~~CId~WL~~~----~tCP 306 (324)
|+||.+ |.+++ .-+.|||+|.|..+||+++++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 45789999999999999999854 3476
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.7e-06 Score=78.78 Aligned_cols=52 Identities=29% Similarity=0.690 Sum_probs=44.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHH-HHhcCCC-CccccccccCCCC
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WLYINAT-CPLCKYNILKSSS 317 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~~ 317 (324)
..|..|.||++..++. ..+||+|+|+..||-. |-+++.. ||+||+.+..+..
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4578999999997766 6889999999999999 9988866 9999998776543
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=4.3e-06 Score=78.68 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCccccccccc-ccCCC-eeEEeCCCCccchhhHHHHH-hcCCCCccccccccCCC
Q 020569 264 EDAECCICLSA-YDDGV-ELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSS 316 (324)
Q Consensus 264 e~~~C~ICL~~-y~~~~-~lr~LpC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~ 316 (324)
++..|++|..+ |-+.+ .+..-+|+|.|+..||+..+ .....||.|+.++.+++
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 34689999986 44444 23333799999999999965 44578999999888765
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.99 E-value=1.7e-06 Score=64.44 Aligned_cols=49 Identities=35% Similarity=0.817 Sum_probs=24.5
Q ss_pred cccccccccccCCCeeEEe-----CCCCccchhhHHHHHhc---C--------CCCccccccccC
Q 020569 266 AECCICLSAYDDGVELREL-----PCGHHFHCACVDKWLYI---N--------ATCPLCKYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~L-----pC~H~FH~~CId~WL~~---~--------~tCPlCR~~I~~ 314 (324)
.+|.||.+...+++++-.+ .|++.||..|+.+||.. + .+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5799999987644433222 37899999999999963 1 249999998864
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.98 E-value=1.8e-06 Score=89.89 Aligned_cols=51 Identities=33% Similarity=0.781 Sum_probs=37.9
Q ss_pred CCCcccccccccccCCC---eeEEeC-CCCccchhhHHHHHhc--CCCCcccccccc
Q 020569 263 NEDAECCICLSAYDDGV---ELRELP-CGHHFHCACVDKWLYI--NATCPLCKYNIL 313 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~---~lr~Lp-C~H~FH~~CId~WL~~--~~tCPlCR~~I~ 313 (324)
.+-.+|+||.+-..--| +-...| |.|-||..|+.+|++. +.+||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44579999987765222 112223 8899999999999985 578999998775
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.7e-06 Score=80.22 Aligned_cols=45 Identities=40% Similarity=0.987 Sum_probs=36.6
Q ss_pred CcccccccccccCCCeeEEeC-CCCccchhhHHHHHhc---CCCCcccc
Q 020569 265 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI---NATCPLCK 309 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~---~~tCPlCR 309 (324)
.+.|.||.+-+....++.-+. |+|.||..|+..|+.. +.+||.||
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 378999955555555666666 9999999999999985 46899999
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.87 E-value=7.2e-06 Score=61.43 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=38.8
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhc-CCCCccccccccCC
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 315 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 315 (324)
.-.|+|+.+-+.|. ..+|++|.|-..||.+|++. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 45799999999998 68899999999999999998 89999999988764
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.8e-05 Score=75.17 Aligned_cols=50 Identities=34% Similarity=0.749 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cchhhHHHHHhcCCCCccccccccCC
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
++..+|.|||++-.|- ..|||.|. .+.+|-+.-.-..+.||+||++|..-
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 4578999999996665 79999997 89999999666788999999998654
No 38
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.79 E-value=6.2e-06 Score=76.31 Aligned_cols=51 Identities=29% Similarity=0.787 Sum_probs=43.4
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHh-----------------------cCCCCccccccccCCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------------------INATCPLCKYNILKSS 316 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~ 316 (324)
-+|.|||--|.+++....++|.|+||..|+.+.|. ..+.||+||..|....
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 57999999999999999999999999999987661 1356999999887543
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.9e-06 Score=74.76 Aligned_cols=45 Identities=36% Similarity=0.827 Sum_probs=40.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccc
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
.+...|+||++.|.+. +.+||+|.|+..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999999 88999999999999999986678999993
No 40
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.73 E-value=1.1e-05 Score=75.83 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=43.7
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
..|.||.+=|... ..+||+|.|+.-||.+.|..+..||.|+..+.+..
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 5899999998887 78899999999999999999999999999887654
No 41
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-05 Score=78.31 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=39.0
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhcC-----CCCccccccccCC
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKS 315 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~~ 315 (324)
+..|+|||+...-. ..+-|+|.|+..||-..+... ..||+|+..|..+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 78999999986555 344499999999999988654 5699999988763
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.66 E-value=8.6e-06 Score=83.53 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=45.1
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
...|++||..+.++...-.-+|.|.||..||+.|-+.-++||+||....+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 35899999999999888888899999999999999999999999986643
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.6e-05 Score=74.85 Aligned_cols=51 Identities=29% Similarity=0.836 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCC----eeEEeC-CCCccchhhHHHHHh--c-----CCCCcccccccc
Q 020569 263 NEDAECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWLY--I-----NATCPLCKYNIL 313 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CId~WL~--~-----~~tCPlCR~~I~ 313 (324)
..+.+|.||++...+.. ....|| |+|.|+..||++|-. . +..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45689999999876554 134456 999999999999993 3 567999998654
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.52 E-value=4.7e-05 Score=70.29 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=41.2
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
..|-||-+-+... ..++|+|.|+.-||..-|..+..||+||.+-.+
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5799998888777 678899999999999999999999999987644
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=7e-05 Score=72.11 Aligned_cols=47 Identities=38% Similarity=0.940 Sum_probs=36.8
Q ss_pred CcccccccccccCCCe--eEEeCCCCccchhhHHHHHhc--CCCCcccccc
Q 020569 265 DAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYI--NATCPLCKYN 311 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~--lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~ 311 (324)
..+|+|||++|+-.-+ +..+.|+|.|-.+||++||-+ ...||.|+..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3679999999985433 444559999999999999953 3569999764
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.13 E-value=0.00014 Score=69.63 Aligned_cols=48 Identities=31% Similarity=0.664 Sum_probs=40.1
Q ss_pred CcccccccccccCC-CeeEEeCCCCccchhhHHHHHhcC--CCCccccccc
Q 020569 265 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNI 312 (324)
Q Consensus 265 ~~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CId~WL~~~--~tCPlCR~~I 312 (324)
+.-|..|=+.|... +.+-.|||.|+||..|+.+-|.+| .+||-||+-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45799999888644 468889999999999999999887 5699999533
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00022 Score=66.29 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc-CCCCccccccccCC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 315 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 315 (324)
.+++|+||+..-.-. ..|+|+|.|+-.||+.=.+. +.+||+||++|.+.
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 357899999886555 67899999999999987765 56799999999764
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=7.6e-05 Score=70.73 Aligned_cols=52 Identities=31% Similarity=0.537 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCeeEEeC-CCCccchhhHHHHHh-cCCCCccccccccCCCCc
Q 020569 264 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLCKYNILKSSSN 318 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~~~ 318 (324)
.+..|.|||+-++.. +.++ |.|-|+.+||.+=++ .+.+||.||+.+..+-+.
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence 457899999988776 5666 999999999999997 479999999998776543
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.04 E-value=0.0003 Score=58.43 Aligned_cols=38 Identities=24% Similarity=0.530 Sum_probs=32.5
Q ss_pred CcccccccccccCCCeeEEeCCC------CccchhhHHHHHhcC
Q 020569 265 DAECCICLSAYDDGVELRELPCG------HHFHCACVDKWLYIN 302 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~------H~FH~~CId~WL~~~ 302 (324)
..+|+||++...+++.+..++|+ |.||.+|+++|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 36899999999997788888887 999999999994433
No 50
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.92 E-value=0.00057 Score=46.73 Aligned_cols=40 Identities=30% Similarity=0.838 Sum_probs=28.5
Q ss_pred cccccccccCCCeeEEeCCC-----CccchhhHHHHHh--cCCCCccc
Q 020569 268 CCICLSAYDDGVELRELPCG-----HHFHCACVDKWLY--INATCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~-----H~FH~~CId~WL~--~~~tCPlC 308 (324)
|-||+++-++++ .-..||+ ..-|.+|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999977766 3457866 4899999999997 45779988
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.92 E-value=0.00024 Score=51.41 Aligned_cols=49 Identities=20% Similarity=0.585 Sum_probs=23.8
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCCCc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 318 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 318 (324)
-.|.+|-+-+++. +....|.|.|+..||..-+ ...||+|+.+--.++-.
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHHHH
Confidence 4699998887766 3445699999999998844 45699999987665543
No 52
>PHA02862 5L protein; Provisional
Probab=96.90 E-value=0.0006 Score=57.03 Aligned_cols=45 Identities=29% Similarity=0.677 Sum_probs=35.4
Q ss_pred cccccccccccCCCeeEEeCCC-----CccchhhHHHHHhc--CCCCccccccccC
Q 020569 266 AECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCKYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~~ 314 (324)
+.|=||.++-+++ .-||. ..-|.+|+.+|++. +.+||+||.+...
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 6799999985433 35765 68999999999974 5779999987754
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0002 Score=49.95 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=32.7
Q ss_pred cccccccccccCCCeeEEeCCCCc-cchhhHHHHHh-cCCCCcccccccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHH-FHCACVDKWLY-INATCPLCKYNIL 313 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CId~WL~-~~~tCPlCR~~I~ 313 (324)
++|.||.+.=.|. ....|+|. .+-+|-.+-++ .+..||+||.+|.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 7899998764433 23459997 66677555444 7899999999875
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00098 Score=65.33 Aligned_cols=52 Identities=33% Similarity=0.809 Sum_probs=44.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCCC
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 317 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 317 (324)
..+-+|+||...+.+. ..+||+|.|+..||++=+..+..||+||..+.+-..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~ 133 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVELPA 133 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccchH
Confidence 4567999999988887 577999999999999988888999999999886433
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.57 E-value=0.00091 Score=64.42 Aligned_cols=46 Identities=30% Similarity=0.805 Sum_probs=38.5
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhc--CCCCccccccccC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 314 (324)
.-|-||-+. +..++.=||+|..+..|+..|-.. .++||.||..|..
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 369999654 556788899999999999999854 5899999998864
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.55 E-value=0.0012 Score=65.00 Aligned_cols=54 Identities=30% Similarity=0.704 Sum_probs=45.1
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCCC
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 317 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 317 (324)
..++..|+||.....+.-.. +.|+|.|+..|+.+|+..+..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 35568899999999988422 5799999999999999999999999887765443
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.48 E-value=0.0014 Score=46.68 Aligned_cols=41 Identities=24% Similarity=0.677 Sum_probs=28.8
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhc--CCCCcc
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPL 307 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPl 307 (324)
...|+|.+..|++. ++-..|+|.|-++.|.+|++. +..||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 36899999998865 666789999999999999944 466998
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.39 E-value=0.0022 Score=69.98 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcC----------CCCccccccccC
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----------ATCPLCKYNILK 314 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~ 314 (324)
...|+.|-||..+--......+|.|+|.||..|...-|++. -.||+|+.+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45678999999988888888999999999999999877643 359999998754
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.003 Score=56.62 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=44.2
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc--------CCCCccccccccCCCCc
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN 318 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~~ 318 (324)
-+..|..|--.++.+|.+| |-|-|.||.+|+++|--. .-.||-|..+|....+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 3467999999999998876 559999999999999853 23599999999876553
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0012 Score=56.23 Aligned_cols=37 Identities=35% Similarity=0.781 Sum_probs=32.5
Q ss_pred CcccCCCCCcccccccccccCCCeeEEeCCCCccchh
Q 020569 257 NEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCA 293 (324)
Q Consensus 257 ~e~~~~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~ 293 (324)
++.++..+.-+|.|||++++.++.+..|||-.+||+.
T Consensus 169 NdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 169 NDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred ccchhcccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 4556777778999999999999999999999999973
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.30 E-value=0.003 Score=53.83 Aligned_cols=50 Identities=30% Similarity=0.650 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCCCeeEEeCCC--C---ccchhhHHHHHhc--CCCCccccccccCC
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNILKS 315 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~~~ 315 (324)
+..+..|=||.++.. +. .-||. . .-|.+|+++|+.. +.+||+|+++....
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345678999998843 22 25755 4 6799999999975 56799998876543
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0056 Score=59.38 Aligned_cols=47 Identities=30% Similarity=0.681 Sum_probs=39.4
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhcC--------CCCcccccc
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKYN 311 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~--------~tCPlCR~~ 311 (324)
--.|+||.++....+-...|||.|+|++.|....+.+. -.||-++.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 36899999998887889999999999999999999642 348877654
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.48 E-value=0.0056 Score=61.04 Aligned_cols=54 Identities=28% Similarity=0.639 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHh-----cCCCCccccccccCCCCccc
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----INATCPLCKYNILKSSSNQD 320 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~~~~~ 320 (324)
+..+|.+|-+.-+|. .+..|.|.|+.-||.+... .|-+||.|...+....+..+
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~a 593 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPA 593 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchh
Confidence 457899998885554 6788999999999988874 36889999888876655443
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.41 E-value=0.007 Score=47.94 Aligned_cols=33 Identities=27% Similarity=0.804 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHH
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVD 296 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId 296 (324)
.++..|++|-..+.+ ......||+|.||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 345679999999988 567788999999999975
No 65
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0051 Score=63.87 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=39.6
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhc-CCCCccccccccCCCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSS 317 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~ 317 (324)
-.|+.|-...+|- ..+.|+|.|+..||.+-+.. ...||.|..+...++-
T Consensus 644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 5899998766554 34559999999999999974 6789999998876653
No 66
>PHA03096 p28-like protein; Provisional
Probab=94.99 E-value=0.012 Score=55.42 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=28.9
Q ss_pred cccccccccccCCC----eeEEeC-CCCccchhhHHHHHhc
Q 020569 266 AECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWLYI 301 (324)
Q Consensus 266 ~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CId~WL~~ 301 (324)
.+|.||++...+.. .-..|+ |+|.|+..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 68999998866432 344688 9999999999999964
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.98 E-value=0.012 Score=40.25 Aligned_cols=44 Identities=25% Similarity=0.566 Sum_probs=20.6
Q ss_pred cccccccccCCCeeEEeC--CCCccchhhHHHHHh-cCCCCccccccc
Q 020569 268 CCICLSAYDDGVELRELP--CGHHFHCACVDKWLY-INATCPLCKYNI 312 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~Lp--C~H~FH~~CId~WL~-~~~tCPlCR~~I 312 (324)
|++|.+++. ......+| |++.....|...=++ .+..||-||.+.
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccc-cCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999983 33334566 668888888777665 478899999874
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.90 E-value=0.011 Score=61.91 Aligned_cols=54 Identities=31% Similarity=0.629 Sum_probs=40.2
Q ss_pred cCCCCCcccccccccccCCCeeEEeC-CCCccchhhHHHHHhcC-------CCCcccccccc
Q 020569 260 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN-------ATCPLCKYNIL 313 (324)
Q Consensus 260 ~~~~e~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~~-------~tCPlCR~~I~ 313 (324)
.++.+..+|.||.+.+.-.+.+=--. |-|+||..||.+|-+.. =.||-|++...
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34455679999999988776553333 77999999999999642 24999985443
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.83 E-value=0.01 Score=52.30 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=38.5
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYN 311 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~ 311 (324)
-.|.||-.+|+.+ ..+.|+|+|+..|.-+=++...+|-+|-+.
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 4799999999988 677899999999999988899999999664
No 70
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.0023 Score=61.51 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=46.4
Q ss_pred cccccccccccCC-CeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 266 AECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 266 ~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
..|+||-..|+.. +.+..+-|+|.+|.+|+.+||.....||-|++.+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 5799999999988 88899999999999999999999999999999887653
No 71
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.45 E-value=0.012 Score=55.77 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
...+|.+|-.=+-|... ..-|-|.|++.||-+-|..+.+||.|.-.|.+.
T Consensus 14 ~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34689999777777642 245999999999999999999999998877654
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.015 Score=54.17 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=40.9
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
..|-||-..|.++ ..+.|+|+|+..|--+=+++...|++|.+.+-.
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4599999999998 678899999999999999999999999887643
No 73
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=94.17 E-value=0.036 Score=52.32 Aligned_cols=51 Identities=29% Similarity=0.660 Sum_probs=39.7
Q ss_pred CcccccccccccCCCe-eEEeCCC-----CccchhhHHHHHh--cCCCCccccccccCC
Q 020569 265 DAECCICLSAYDDGVE-LRELPCG-----HHFHCACVDKWLY--INATCPLCKYNILKS 315 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~-lr~LpC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~~ 315 (324)
+..|-||..+...... .-+.||. +..|..|+++|+. .+.+|.+|++.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999998765432 4577876 7889999999998 567899998865443
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.052 Score=52.08 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
-.+.|.||+++.++ ...+||+|.=+ |..- -+...+||+||+.|..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 34679999999777 47899999955 6554 3345669999998753
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.1 Score=48.35 Aligned_cols=50 Identities=28% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc--CCCCcccccccc
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNIL 313 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~ 313 (324)
...+.+|++|=+.=.. .-...||+|.|+-.||..=+.- .-+||.|-.+..
T Consensus 236 ~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4456899999766333 3345679999999999987653 478999988876
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.069 Score=48.73 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCcccccccccccCCCeeEEeC-CCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 264 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
....|++|-+.+.+...+..|. |+|+|..+|+++..+....||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 4468999999999999988885 9999999999999999999999988776544
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.78 E-value=0.052 Score=50.74 Aligned_cols=46 Identities=28% Similarity=0.731 Sum_probs=35.7
Q ss_pred cccccccccccCCCeeEEeC-CCCccchhhHHHHHh-cCCCCccc-cccccC
Q 020569 266 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLC-KYNILK 314 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~-~~~tCPlC-R~~I~~ 314 (324)
..|+.|-.-..+. ..+| |+|.|+.+||..-|. ....||.| |++|.-
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 5799998777666 4567 889999999998876 45789999 445543
No 78
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.065 Score=51.24 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
.||..|+||... +-.-...||+|-=+..||.+-|..++.|=.||..+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 678999999665 333467899999999999999999999999999776
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.091 Score=45.66 Aligned_cols=51 Identities=31% Similarity=0.711 Sum_probs=33.7
Q ss_pred cccccccccccCCC----eeEEeCCCCccchhhHHHHHhcC-----------CCCccccccccCCC
Q 020569 266 AECCICLSAYDDGV----ELRELPCGHHFHCACVDKWLYIN-----------ATCPLCKYNILKSS 316 (324)
Q Consensus 266 ~~C~ICL~~y~~~~----~lr~LpC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~~~~ 316 (324)
..|.||..---+|. ..--..|+.-||.-|+..||+.- ..||.|..+|.-+-
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 35666643222222 22335699999999999999631 35999999886543
No 80
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.14 E-value=0.15 Score=43.58 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=23.4
Q ss_pred CCcccccccccccCCCe---------eEEeCCC-CccchhhHHHHHh
Q 020569 264 EDAECCICLSAYDDGVE---------LRELPCG-HHFHCACVDKWLY 300 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~---------lr~LpC~-H~FH~~CId~WL~ 300 (324)
||+.|+|||+-=.+... .|-.=|+ -+=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46899999976443311 2222254 3468999999764
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.96 E-value=0.084 Score=49.33 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=38.4
Q ss_pred cccccccccccCCC-eeEEeCCCCccchhhHHHHHhcCCCCccccc
Q 020569 266 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 266 ~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
..|+||.+.+-+.. .+..+||+|.-|..|..+-...+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44999998876654 4678999999999999998888899999988
No 82
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.90 E-value=0.062 Score=36.50 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=23.7
Q ss_pred EeCCC-CccchhhHHHHHhcCCCCccccccccCC
Q 020569 283 ELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 283 ~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
...|+ |..+..|+..-|.++..||+|+.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 35687 9999999999999999999999998764
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.31 Score=46.27 Aligned_cols=50 Identities=22% Similarity=0.522 Sum_probs=39.2
Q ss_pred cCCCCCcccccccccccCCCeeEEeC-CCCccchhhHHHHHhcCCCCccccccc
Q 020569 260 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNI 312 (324)
Q Consensus 260 ~~~~e~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I 312 (324)
.++.+...|++|+..-.++. .+. =+-+|+-.||-+.+...+.||+=-.+.
T Consensus 295 ~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34556689999999977763 333 478999999999999999999865543
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.12 Score=48.66 Aligned_cols=47 Identities=34% Similarity=0.687 Sum_probs=38.9
Q ss_pred cccccccccccCCCe---eEEeCCCCccchhhHHHHHhcC-CCCccccccc
Q 020569 266 AECCICLSAYDDGVE---LRELPCGHHFHCACVDKWLYIN-ATCPLCKYNI 312 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~---lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I 312 (324)
.+|-||=++|...+. -|.|.|+|.|...|+.+-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 479999999987753 4677899999999999877653 6699999984
No 85
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.34 E-value=0.23 Score=52.22 Aligned_cols=54 Identities=22% Similarity=0.569 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCCCeeEEeCCC-----CccchhhHHHHHhcC--CCCccccccccCCC
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS 316 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~~~~ 316 (324)
.+++..|-||..+=..++++ --||+ -.-|.+|+-+|+.-+ ..|-+|++++.-++
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 45568999999886666655 34665 679999999999854 55999999886544
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.1 Score=49.10 Aligned_cols=44 Identities=27% Similarity=0.630 Sum_probs=30.7
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccC
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
.|--|= |-..-.-|..||+|+|+.+|-.. ...+.||+|-..|.+
T Consensus 92 fCd~Cd--~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCD--FPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccC--Ccceeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 455553 33333458899999999999654 335689999877654
No 87
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=0.17 Score=51.99 Aligned_cols=51 Identities=33% Similarity=0.865 Sum_probs=42.8
Q ss_pred cCCCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCCC
Q 020569 260 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 317 (324)
Q Consensus 260 ~~~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 317 (324)
.+.+....|.||+.+. ..|..+|. |..|+.+|+..+..||+|+..+..++.
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 4455668999999998 55788899 999999999999999999887766544
No 88
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=89.78 E-value=2.8 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHhcCCCCccccccccCCCCccccC
Q 020569 297 KWLYINATCPLCKYNILKSSSNQDRE 322 (324)
Q Consensus 297 ~WL~~~~tCPlCR~~I~~~~~~~~~~ 322 (324)
+-|.+...|+.|++++.-..+.+.+|
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~legke 105 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEGKE 105 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhcch
Confidence 44666788999999998877666543
No 89
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.079 Score=49.46 Aligned_cols=43 Identities=30% Similarity=0.742 Sum_probs=32.0
Q ss_pred CcccccccccccCCCeeEEeCCCCcc-chhhHHHHHhcCCCCccccccccC
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHF-HCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~F-H~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
+.-|+||++. .-....|+|+|.- +.+|=.. -+.||+||+-|.+
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999987 4456789999964 4556433 3589999987754
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.47 E-value=0.21 Score=35.18 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=33.4
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
..|-.|... +..-..+||+|.-...|-+.+ +-+-||+|..++...+
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 345555443 333468999999999998763 5678999999887654
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.39 E-value=0.15 Score=34.04 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=20.8
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhcCC--CCccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA--TCPLC 308 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlC 308 (324)
|.+|-+-.-.|.....-.|+=.+|..|++..++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 445544444443222223777899999999998654 79988
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=0.25 Score=52.57 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=29.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHHHH
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 299 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL 299 (324)
..++.|.+|...+... .-.+-||+|.||.+||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 3457899998887765 56678999999999998754
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=0.38 Score=43.29 Aligned_cols=39 Identities=26% Similarity=0.611 Sum_probs=28.6
Q ss_pred cccccccccCCCeeEEeCCCCc-cchhhHHHHHhcCCCCcccccccc
Q 020569 268 CCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
|-.|-. .+..+..+||+|+ ++..|=+. -.+||+|+....
T Consensus 161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 777744 4667889999987 66778655 455999987654
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=0.17 Score=51.88 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=34.6
Q ss_pred cccccccccccCCCee-EEeCCCCccchhhHHHHHhcCCCCccccccc
Q 020569 266 AECCICLSAYDDGVEL-RELPCGHHFHCACVDKWLYINATCPLCKYNI 312 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~l-r~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 312 (324)
..|.||+..|...... +-|-|+|.-+..|+.+ ..|++|| |+++=
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De 56 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDE 56 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccc
Confidence 5799999998876533 3455999999999987 4589999 87753
No 95
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.07 E-value=0.94 Score=43.44 Aligned_cols=47 Identities=34% Similarity=0.848 Sum_probs=35.4
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHH--HhcCCCCcccccc
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW--LYINATCPLCKYN 311 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~W--L~~~~tCPlCR~~ 311 (324)
.++...|-||-.... ..-.+||+|-.+-.|--+- |-....||+||..
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 345578999977643 4478999999888886543 3467899999974
No 96
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=0.34 Score=51.29 Aligned_cols=42 Identities=26% Similarity=0.720 Sum_probs=32.7
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 312 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 312 (324)
..|..|--..+-+. .-..|+|.||..|+. .....||-|+-+.
T Consensus 841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 57999977766552 344599999999998 5668899998743
No 97
>PF04641 Rtf2: Rtf2 RING-finger
Probab=85.43 E-value=1.1 Score=41.64 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeEEe-CCCCccchhhHHHHHhcCCCCccccccccCC
Q 020569 263 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 315 (324)
...-.|+|...+|........| ||+|+|-..++++- +....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 3456899999999777666666 79999999999995 4467799998876543
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=85.41 E-value=1.7 Score=42.28 Aligned_cols=29 Identities=24% Similarity=0.738 Sum_probs=21.6
Q ss_pred CCCccchhhHHHHHh-------------cCCCCccccccccC
Q 020569 286 CGHHFHCACVDKWLY-------------INATCPLCKYNILK 314 (324)
Q Consensus 286 C~H~FH~~CId~WL~-------------~~~tCPlCR~~I~~ 314 (324)
|.-..+.+|+.+|+- .+.+||.||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 446678999999883 24579999987543
No 99
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.91 E-value=0.41 Score=50.42 Aligned_cols=46 Identities=33% Similarity=0.663 Sum_probs=37.5
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhc--CCCCccccccccCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKS 315 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~ 315 (324)
..|.||++ .+.....+|+|.|+.+|+.+=+.. ++-||+||..+...
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 455678899999999999887764 45699999877654
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.55 E-value=1.2 Score=31.27 Aligned_cols=43 Identities=28% Similarity=0.739 Sum_probs=34.2
Q ss_pred CcccccccccccCCCeeEEeC-CCCccchhhHHHHHhcCCCCcc--cccc
Q 020569 265 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL--CKYN 311 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPl--CR~~ 311 (324)
...|.+|=+.|.+++.+.+-| |+--+|.+|-++ ...|-. |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 357999999999898888999 999999999554 566654 5443
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.56 E-value=0.29 Score=50.96 Aligned_cols=49 Identities=37% Similarity=0.649 Sum_probs=40.4
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhc---CCCCccccccccCCCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKSSS 317 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~ 317 (324)
.+|.||+..|.++ ..+.|.|.|...|+..=|.. ...||+|+.++.+.+.
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 6899999999988 56789999999998886654 3569999988876543
No 102
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.52 E-value=0.64 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.852 Sum_probs=21.9
Q ss_pred eCCCCccchhhHHHHHhcCCCCcc
Q 020569 284 LPCGHHFHCACVDKWLYINATCPL 307 (324)
Q Consensus 284 LpC~H~FH~~CId~WL~~~~tCPl 307 (324)
..|+|.-|..|..+|+++...||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 458899999999999999999994
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.36 E-value=0.38 Score=53.12 Aligned_cols=47 Identities=34% Similarity=0.758 Sum_probs=39.3
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
...|.||++...+.- ....|+|.+++.|...|+..+..||.|+....
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 358999999988543 34569999999999999999999999996443
No 104
>PRK02935 hypothetical protein; Provisional
Probab=81.95 E-value=12 Score=30.01 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHhcCCCCccccccccCCCCccccC
Q 020569 297 KWLYINATCPLCKYNILKSSSNQDRE 322 (324)
Q Consensus 297 ~WL~~~~tCPlCR~~I~~~~~~~~~~ 322 (324)
+-|-+-..|..|+.++.-..+.++++
T Consensus 81 KmLGrvD~CM~C~~PLTLd~~legke 106 (110)
T PRK02935 81 KMLGRVDACMHCNQPLTLDRSLEGKE 106 (110)
T ss_pred hhccceeecCcCCCcCCcCccccccC
Confidence 34556677999999998876665543
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.90 E-value=1 Score=43.11 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=36.1
Q ss_pred CCCcccccccccccCCCe-eEEeCCCCccchhhHHHHHh-cCCCCccccccccC
Q 020569 263 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 314 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 314 (324)
.|++-|+.|++++...|+ ..-.||+-..+.-|-..--+ .|..||-||+....
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 455679999999986664 44456887666667443222 47899999986654
No 106
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=79.21 E-value=1.3 Score=41.02 Aligned_cols=48 Identities=25% Similarity=0.563 Sum_probs=37.1
Q ss_pred CcccccccccccCCCeeEEe---C-CCCccchhhHHHHHh---------cCCCCccccccc
Q 020569 265 DAECCICLSAYDDGVELREL---P-CGHHFHCACVDKWLY---------INATCPLCKYNI 312 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~L---p-C~H~FH~~CId~WL~---------~~~tCPlCR~~I 312 (324)
..+|-+|.+++.+.++.+.. | |+-++|..|+..-+. ..+.||.|++-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36999999999766666654 3 888999999999443 246799998744
No 107
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.84 E-value=1.3 Score=42.09 Aligned_cols=44 Identities=20% Similarity=0.604 Sum_probs=34.6
Q ss_pred CCcccccccccccCCCeeEEeCCC--CccchhhHHHHHhcCCCCccccccccC
Q 020569 264 EDAECCICLSAYDDGVELRELPCG--HHFHCACVDKWLYINATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~--H~FH~~CId~WL~~~~tCPlCR~~I~~ 314 (324)
+-.+|+||.+.+... ...|+ |.-+..|=. +.+..||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 447999999998877 35575 888887754 568899999999873
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.81 E-value=1.1 Score=41.27 Aligned_cols=51 Identities=24% Similarity=0.668 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCee-EEeCCC-----CccchhhHHHHHhcC--------CCCccccccccC
Q 020569 264 EDAECCICLSAYDDGVEL-RELPCG-----HHFHCACVDKWLYIN--------ATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~l-r~LpC~-----H~FH~~CId~WL~~~--------~tCPlCR~~I~~ 314 (324)
.+..|=||+..=+|+-.- =+-||. |--|..|+..|...+ -+||-|+.....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 356799999875554221 134664 889999999999543 249999987654
No 109
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.23 E-value=1 Score=46.39 Aligned_cols=42 Identities=24% Similarity=0.558 Sum_probs=27.1
Q ss_pred Cccccccc-----ccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccc
Q 020569 265 DAECCICL-----SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 309 (324)
Q Consensus 265 ~~~C~ICL-----~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 309 (324)
.-.|-+|- -.|+.....+-.-|++.||++|.. ..+..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~---r~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLR---RKSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHh---ccCCCCCchH
Confidence 35677772 224433344555699999999943 3455599993
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.66 E-value=2.3 Score=44.96 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCcccccccccccC-CCeeEEeC---CCCccchhhHHHHHhc------CCCCcccccccc
Q 020569 264 EDAECCICLSAYDD-GVELRELP---CGHHFHCACVDKWLYI------NATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y~~-~~~lr~Lp---C~H~FH~~CId~WL~~------~~tCPlCR~~I~ 313 (324)
+...|.+|.-++.+ .|..-.+| |.|.|+..||..|+.. +-.||+|+..|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34567777766665 33455567 9999999999999953 566999988764
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.12 E-value=2.3 Score=39.96 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=22.3
Q ss_pred CCCccchhhHHHHH-------------hcCCCCccccccccC
Q 020569 286 CGHHFHCACVDKWL-------------YINATCPLCKYNILK 314 (324)
Q Consensus 286 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~~ 314 (324)
|.-..+.+|+.+|+ +.+.+||.||++...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44667889998887 446789999998654
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=69.76 E-value=1.8 Score=39.63 Aligned_cols=51 Identities=33% Similarity=0.604 Sum_probs=38.1
Q ss_pred CCccccccccc-ccCCC-eeEEeC-CCCccchhhHHHHHhc-CCCCc--cccccccC
Q 020569 264 EDAECCICLSA-YDDGV-ELRELP-CGHHFHCACVDKWLYI-NATCP--LCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~-y~~~~-~lr~Lp-C~H~FH~~CId~WL~~-~~tCP--lCR~~I~~ 314 (324)
+|..|++|-.+ |-+++ .+..-| |-|-.+..|+|+-+.. -+.|| -|-+-+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 45689999976 44554 344457 9999999999999976 47899 78665544
No 113
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=68.48 E-value=2.5 Score=41.75 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc
Q 020569 264 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 301 (324)
Q Consensus 264 e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~ 301 (324)
|+..|+||..=|++. ..|||+|..+..|-..=+-.
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 457899999999988 89999999999999887743
No 114
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=4.6 Score=39.53 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=36.4
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcC---CCCccccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKY 310 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~---~tCPlCR~ 310 (324)
-.|+|=-+.=.++..-..|.|+|+--++-+++--+.. ..||.|=.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4688887777788888999999999999999965532 35999943
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.71 E-value=5.4 Score=42.11 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=30.2
Q ss_pred CcccccccccccCCCeeEEeC-CCCccchhhHHHHHhcCCCCcc
Q 020569 265 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL 307 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPl 307 (324)
.+.|++|-.....-+ ..-+ |+|.-|.+|+.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~G~~--~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVD--VWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeeeE--eecccccccccHHHHHHHHhcCCCCcc
Confidence 357998854433221 1223 9999999999999999999987
No 116
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=3.2 Score=43.95 Aligned_cols=43 Identities=23% Similarity=0.505 Sum_probs=33.3
Q ss_pred CcccccccccccCC----CeeEEeCCCCccchhhHHHHHhcCCCCccc
Q 020569 265 DAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLC 308 (324)
Q Consensus 265 ~~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 308 (324)
+..|+-|.+..-.. +.+..+.|+|.||+.|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34799998775522 4678899999999999998887776 6555
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=63.34 E-value=4.7 Score=36.05 Aligned_cols=39 Identities=31% Similarity=0.703 Sum_probs=26.9
Q ss_pred ccccccccc-----ccCCCeeEEeC-CCCccchhhHHHHHhcCCCCccccc
Q 020569 266 AECCICLSA-----YDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 266 ~~C~ICL~~-----y~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
-.|-+|-++ |+.+ .+..-+ |+-.||.+|.. +..||-|.+
T Consensus 153 fiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 568888653 4443 344444 99999999966 267999954
No 118
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=62.87 E-value=6.3 Score=32.87 Aligned_cols=50 Identities=38% Similarity=0.818 Sum_probs=34.7
Q ss_pred cccccccccccCCCeeEEe-C---CCCccchhhH-HHHHh--cCCCCccccccccCCCCc
Q 020569 266 AECCICLSAYDDGVELREL-P---CGHHFHCACV-DKWLY--INATCPLCKYNILKSSSN 318 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~L-p---C~H~FH~~CI-d~WL~--~~~tCPlCR~~I~~~~~~ 318 (324)
.+|.||-+.-.|+ |-| | |+-.-+-.|- .-|-- ..+.||+||.+....+..
T Consensus 81 YeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~~ 137 (140)
T PF05290_consen 81 YECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSSA 137 (140)
T ss_pred eeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccccc
Confidence 6899998886655 333 3 7766666654 45543 468899999988766544
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=61.91 E-value=3 Score=28.65 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=20.3
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhHHHHHhcC-----CCCcccccc
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYN 311 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~~ 311 (324)
.|+|....++. .+|--.|.|.-. -=++.||+.+ -.||+|+++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 57777777655 467778998731 2245677543 249999864
No 120
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=5.7 Score=39.79 Aligned_cols=37 Identities=38% Similarity=0.811 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhc
Q 020569 263 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 301 (324)
Q Consensus 263 ~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~ 301 (324)
..+.+|-||.+.+.. .+..+.|+|.|...|...-+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 455789999999887 5667789999999999998864
No 121
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.53 E-value=4.4 Score=39.95 Aligned_cols=37 Identities=30% Similarity=0.674 Sum_probs=28.1
Q ss_pred CcccccccccccCC-CeeEEeCCCCccchhhHHHHHhc
Q 020569 265 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYI 301 (324)
Q Consensus 265 ~~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CId~WL~~ 301 (324)
..+|.||..++... +....+.|.|.|+.+|+.+-.+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999555444 44445669999999999988864
No 123
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=50.51 E-value=17 Score=22.28 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=23.3
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 312 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 312 (324)
|..|-..+.+++.... .=+..||.+| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcC
Confidence 7777777776633322 2368899877 4577777665
No 124
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=46.55 E-value=63 Score=30.46 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=55.9
Q ss_pred hhhcCcccccchhhHHHHHH-------HHHHHhhheeeeecc-CCCCCCchhhHHHHHHHHHHHHHHhhhhhhhcccccc
Q 020569 18 ERQSDWAYSKPVVVLDIIWN-------LAFVAVAFSVMVLSQ-NERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89 (324)
Q Consensus 18 ~~~~~w~~s~~~v~~~l~~~-------l~~iv~~i~vL~ls~-~E~p~~Pl~~WivgY~~~c~~~~~l~~~~~~~r~~~~ 89 (324)
-|-.||--+-|++++.+-|. ++.++++..+...+- ---...-..-| .=|++++++++..++.-+.......
T Consensus 104 aRYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~tykW-~~y~ig~~a~lvvl~~l~~~~~~~a 182 (285)
T COG5524 104 ARYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHSTYKW-AYYAIGAAAFLVVLAVLVTGFFAKA 182 (285)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhhH-HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46678889999999988654 333333322221110 00000111223 3489999998877666553322111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcceecccccccccchhHHHHHHHHHHHHHHHHhheeeEEEE
Q 020569 90 VSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSSVAKHLESANTMFSFIWWIIGFYWVS 152 (324)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~W~i~G~~wv~ 152 (324)
++ ++ +.+..-+.++-+++.+.|+++-..|..
T Consensus 183 ~~---------------------------~~-----~~v~~~F~~l~~~~vvLWl~YPivW~i 213 (285)
T COG5524 183 KT---------------------------RG-----TEVRSLFLTLRNYTVVLWLGYPIVWLI 213 (285)
T ss_pred cc---------------------------cc-----hHHHHHHHHHHHHHHHHHHhccceeEE
Confidence 10 00 222223555667899999999999998
No 125
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=17 Score=34.20 Aligned_cols=45 Identities=29% Similarity=0.515 Sum_probs=32.9
Q ss_pred cccCCCe-eEEeCCCCccchhhHHHHHhcC-CCCccccccccCCCCc
Q 020569 274 AYDDGVE-LRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKSSSN 318 (324)
Q Consensus 274 ~y~~~~~-lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~~~ 318 (324)
.|-+.+- +..=||+|.-+.+|+|.-+..+ ..||-|-..+.++.-+
T Consensus 10 ~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 10 RYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred eecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 3445543 2333799999999999988765 7799998887765443
No 126
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=46.01 E-value=10 Score=27.15 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=11.6
Q ss_pred CCCCccccccccCCC
Q 020569 302 NATCPLCKYNILKSS 316 (324)
Q Consensus 302 ~~tCPlCR~~I~~~~ 316 (324)
..+||+|+++..++.
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 367999999877653
No 127
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=45.91 E-value=13 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=12.2
Q ss_pred CCCCccccccccCCCCc
Q 020569 302 NATCPLCKYNILKSSSN 318 (324)
Q Consensus 302 ~~tCPlCR~~I~~~~~~ 318 (324)
+..||+||..+..++.+
T Consensus 2 k~~CPlCkt~~n~gsk~ 18 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKD 18 (61)
T ss_pred CccCCcccchhhcCCCC
Confidence 56899999987555443
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.13 E-value=7.4 Score=26.94 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=7.2
Q ss_pred CCCCccccccccCC
Q 020569 302 NATCPLCKYNILKS 315 (324)
Q Consensus 302 ~~tCPlCR~~I~~~ 315 (324)
+..||+|.+++...
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 34899999988653
No 129
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.80 E-value=37 Score=27.98 Aligned_cols=8 Identities=50% Similarity=0.484 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 020569 170 IIFLGFDV 177 (324)
Q Consensus 170 iifL~f~v 177 (324)
|+.++|++
T Consensus 66 i~~Ii~gv 73 (122)
T PF01102_consen 66 IIGIIFGV 73 (122)
T ss_dssp HHHHHHHH
T ss_pred eeehhHHH
Confidence 33334444
No 130
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=43.11 E-value=20 Score=24.86 Aligned_cols=41 Identities=32% Similarity=0.790 Sum_probs=21.4
Q ss_pred cccccccccCCC------eeEEeC-CCCccchhhHHHHHh-cCCCCcccc
Q 020569 268 CCICLSAYDDGV------ELRELP-CGHHFHCACVDKWLY-INATCPLCK 309 (324)
Q Consensus 268 C~ICL~~y~~~~------~lr~Lp-C~H~FH~~CId~WL~-~~~tCPlCR 309 (324)
|--|+..|.+.. ....-| |+++|..+| |.... .-.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777776652 334556 999999999 55443 346799884
No 131
>COG3671 Predicted membrane protein [Function unknown]
Probab=42.87 E-value=60 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.419 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 020569 165 LYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVAD 210 (324)
Q Consensus 165 ly~l~iifL~f~v~fvi~~v~l~~ii~i~lCcclp~ii~~l~~~~~ 210 (324)
.+|+++.+-..++.+..+++.++.++.+.+=....+++.+.|..++
T Consensus 69 TFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g 114 (125)
T COG3671 69 TFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEG 114 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3677777666666665555555555444443334444445554443
No 132
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=42.38 E-value=64 Score=24.22 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=11.0
Q ss_pred hcCCCHHHHhhcccc
Q 020569 211 QEGASKEDIERLSKF 225 (324)
Q Consensus 211 ~~g~s~~~i~~Lp~~ 225 (324)
.+|+++++.+.|...
T Consensus 33 ~~gLs~~d~~~L~~L 47 (75)
T PF06667_consen 33 SQGLSEEDEQRLQEL 47 (75)
T ss_pred CCCCCHHHHHHHHHH
Confidence 478999888776544
No 133
>PHA02898 virion envelope protein; Provisional
Probab=41.79 E-value=67 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=29.6
Q ss_pred eeeeccCCCC-CCchh-hHHHHHHHHHHHHHHhhhhhhhcc
Q 020569 47 VMVLSQNERP-NMPLR-LWIVGYAIQCVLHMVCVCVEYKRR 85 (324)
Q Consensus 47 vL~ls~~E~p-~~Pl~-~WivgY~~~c~~~~~l~~~~~~~r 85 (324)
..-+||+++| +.++| +=++.+.+|.++.+.++...-++|
T Consensus 30 fidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r 70 (92)
T PHA02898 30 YIELSKSEKPADSALRSISIISFILAIILILGIIFFKGYNM 70 (92)
T ss_pred eehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568999999 77777 447889999999999866654443
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.42 E-value=12 Score=25.09 Aligned_cols=43 Identities=28% Similarity=0.573 Sum_probs=26.9
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhc------CCCCccccc
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKY 310 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~ 310 (324)
|.||-..-.+++.+.=-.|+..||..|++.=.+. .-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7888884333332322248899999998765431 345887753
No 135
>PRK11827 hypothetical protein; Provisional
Probab=41.32 E-value=10 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=15.5
Q ss_pred HHHHhcCCCCccccccccCC
Q 020569 296 DKWLYINATCPLCKYNILKS 315 (324)
Q Consensus 296 d~WL~~~~tCPlCR~~I~~~ 315 (324)
|+||..--.||+||.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777899999888654
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.23 E-value=33 Score=32.86 Aligned_cols=51 Identities=29% Similarity=0.587 Sum_probs=35.5
Q ss_pred CCccccccccccc--------------CCC--eeEEeCCCCccchhhHHHHHhc---------CCCCccccccccC
Q 020569 264 EDAECCICLSAYD--------------DGV--ELRELPCGHHFHCACVDKWLYI---------NATCPLCKYNILK 314 (324)
Q Consensus 264 e~~~C~ICL~~y~--------------~~~--~lr~LpC~H~FH~~CId~WL~~---------~~tCPlCR~~I~~ 314 (324)
.+.+|++|+..=. |.- .-.--||+|.--.+-..-|-++ ++.||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3578999996521 111 0123589999999999999875 4679999877654
No 137
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=40.25 E-value=16 Score=33.00 Aligned_cols=42 Identities=26% Similarity=0.703 Sum_probs=33.3
Q ss_pred CcccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccc
Q 020569 265 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 308 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 308 (324)
-..|.+|-+-.-.+ +|-=.|+-.+|..|+.+.++....||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 36899997764444 2333488889999999999999999999
No 138
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.88 E-value=70 Score=34.19 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=30.7
Q ss_pred CCCCccccccccccc----CCCe-----eEEeC-CCCccchhhHHHHHhcCCCCcccccccc
Q 020569 262 SNEDAECCICLSAYD----DGVE-----LRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~----~~~~-----lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
...+.+|+-|-.+|- .|.. .=..| |+|.-|..=|.+ ...||+|...+.
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 344567777776663 1211 22345 999988765544 688999988654
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.39 E-value=26 Score=33.68 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=37.1
Q ss_pred cccccccccccCCCeeEEeC--CCCccchhhHHHHHhcCCCCccccccccCCCCc
Q 020569 266 AECCICLSAYDDGVELRELP--CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 318 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 318 (324)
..|+||-+.....+ .-.+| |+|.-|..|...=...+.+||.||++...+...
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccCccc
Confidence 68999988763332 23466 667777777777667789999999887765543
No 140
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.30 E-value=16 Score=23.24 Aligned_cols=26 Identities=35% Similarity=0.674 Sum_probs=16.5
Q ss_pred cccccccccccCCCe--------eEEeCCCCccc
Q 020569 266 AECCICLSAYDDGVE--------LRELPCGHHFH 291 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~--------lr~LpC~H~FH 291 (324)
.+|+=|-..|+-+|+ ++--.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888888875553 22233777775
No 141
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.85 E-value=25 Score=21.15 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=10.7
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhH
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACV 295 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI 295 (324)
.|.+|-.+...+...+=..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788777666444455569999999985
No 142
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.73 E-value=16 Score=35.98 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=34.9
Q ss_pred CcccccccccccCCCeeEEe--CCCCccchhhHHHHHhcCCCCccccc
Q 020569 265 DAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
-..|++|-..++-.+....+ .|+|.|.-.|-..|...+..|..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccc
Confidence 45799998877665544333 38899999999999999988876633
No 143
>PRK05978 hypothetical protein; Provisional
Probab=36.46 E-value=20 Score=30.53 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=21.5
Q ss_pred CC--CccchhhHHHHHhcCCCCccccccccCCCC
Q 020569 286 CG--HHFHCACVDKWLYINATCPLCKYNILKSSS 317 (324)
Q Consensus 286 C~--H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 317 (324)
|+ |.|+ .+|+.+.+||.|-.++.....
T Consensus 39 CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 39 CGEGKLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred CCCCcccc-----cccccCCCccccCCccccCCc
Confidence 65 7786 799999999999888766543
No 144
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.22 E-value=21 Score=32.66 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=26.4
Q ss_pred ccccccccccCCCeeEEeCCCCccchhhHHHHHh-cCCCC
Q 020569 267 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATC 305 (324)
Q Consensus 267 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~-~~~tC 305 (324)
.|.-|-. +.+++....+.|.|+|+..|...=.. .-..|
T Consensus 5 hCn~C~~-~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lC 43 (233)
T KOG4739|consen 5 HCNKCFR-FPSQDPFFLTACRHVFCEPCLKASSPDVCPLC 43 (233)
T ss_pred Eeccccc-cCCCCceeeeechhhhhhhhcccCCccccccc
Confidence 3555533 34488899999999999999865554 33444
No 145
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.71 E-value=43 Score=36.31 Aligned_cols=28 Identities=25% Similarity=0.899 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 020569 166 YWLCIIFLGFDVFFVVFCVALACIIGIAVCCC 197 (324)
Q Consensus 166 y~l~iifL~f~v~fvi~~v~l~~ii~i~lCcc 197 (324)
||..+++.++.++|++ +..++++.+|||
T Consensus 90 ~~g~~v~~~i~ll~~i----l~P~vg~~fCcC 117 (806)
T PF05478_consen 90 EWGFLVCAVIGLLFII----LMPLVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhcc
Confidence 4555555555444333 455566677777
No 146
>PRK10633 hypothetical protein; Provisional
Probab=32.51 E-value=1.7e+02 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhheeeE
Q 020569 131 HLESANTMFSFIWWIIGFY 149 (324)
Q Consensus 131 ~l~~~~~~f~~~W~i~G~~ 149 (324)
+....++++.++||.++-|
T Consensus 13 ~~al~L~l~y~~~W~~~aY 31 (80)
T PRK10633 13 RWALGLTLLYLAAWLVAAY 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556788888898886654
No 147
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.25 E-value=22 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.690 Sum_probs=8.9
Q ss_pred cccccccccCCCeeEEeC-CCCcc
Q 020569 268 CCICLSAYDDGVELRELP-CGHHF 290 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~Lp-C~H~F 290 (324)
|+-|-....... +.-| |+|.|
T Consensus 3 CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhc--CcCCCCCCCC
Confidence 444544433222 2334 55554
No 148
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.96 E-value=54 Score=26.61 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=31.8
Q ss_pred cccccccccccCCC----------eeEEeC-CCCccchhhHHHHHhcCCCCccccc
Q 020569 266 AECCICLSAYDDGV----------ELRELP-CGHHFHCACVDKWLYINATCPLCKY 310 (324)
Q Consensus 266 ~~C~ICL~~y~~~~----------~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~ 310 (324)
..|--|+..|.+.. ...+-+ |+++|..+|=.-+-+.=..||-|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 45888888886531 112234 9999999996666667788999963
No 149
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.04 E-value=1.2e+02 Score=28.18 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=36.6
Q ss_pred CcccccccccccCCCeeEEe-CCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 265 DAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
.-.|+|=--++......-.| +|+|+|-..-+.+- ...+|++|...+...+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 35798887777777665555 59999997766552 3678999998776543
No 150
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.74 E-value=9.7 Score=36.02 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=31.8
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCC
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA 303 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~ 303 (324)
.+|.+|.++|+.+.....+-|.-.||..|+-.|++..+
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 38999999999766667777777999999999997653
No 151
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=29.78 E-value=21 Score=21.45 Aligned_cols=14 Identities=29% Similarity=0.971 Sum_probs=7.4
Q ss_pred CCccccccccCCCC
Q 020569 304 TCPLCKYNILKSSS 317 (324)
Q Consensus 304 tCPlCR~~I~~~~~ 317 (324)
+||.|.+.+.....
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 59999999885443
No 152
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.35 E-value=39 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=6.9
Q ss_pred cCCCCccccc
Q 020569 301 INATCPLCKY 310 (324)
Q Consensus 301 ~~~tCPlCR~ 310 (324)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3457999865
No 153
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=29.20 E-value=32 Score=20.60 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=13.0
Q ss_pred CCCchhhhhhHHHHhHh
Q 020569 2 REPSMMVRETAAEQLEE 18 (324)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (324)
..|+-.||++|++-+-+
T Consensus 10 ~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 10 NDPSPEVRQAAAECLGA 26 (31)
T ss_dssp T-SSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57888999999987643
No 154
>PF15431 TMEM190: Transmembrane protein 190
Probab=29.14 E-value=52 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.721 Sum_probs=23.0
Q ss_pred cCCCCCCchh---hHHHHHHHHHHHHHHhhhhhh
Q 020569 52 QNERPNMPLR---LWIVGYAIQCVLHMVCVCVEY 82 (324)
Q Consensus 52 ~~E~p~~Pl~---~WivgY~~~c~~~~~l~~~~~ 82 (324)
.|.+|+.-+| .|.+|++++.++.+.+..+-|
T Consensus 48 YhQRpDEnmrrKHmWaL~wtC~gll~Li~~iclF 81 (134)
T PF15431_consen 48 YHQRPDENMRRKHMWALGWTCGGLLLLICSICLF 81 (134)
T ss_pred eccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3567776665 899999999999887544333
No 155
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.69 E-value=36 Score=24.91 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=8.8
Q ss_pred ccchhhHHHHHh
Q 020569 289 HFHCACVDKWLY 300 (324)
Q Consensus 289 ~FH~~CId~WL~ 300 (324)
.|+..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 156
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=27.67 E-value=33 Score=25.62 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=16.3
Q ss_pred ccccchhhHHHHHHHHHHHhhheeee
Q 020569 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (324)
Q Consensus 24 ~~s~~~v~~~l~~~l~~iv~~i~vL~ 49 (324)
-|++||+ +|-+++|++.+.||.
T Consensus 32 Vy~~Pem----A~~laeiiav~lVl~ 53 (80)
T PRK13727 32 VYSKPWM----AFFLAELIAAILVLF 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHhh
Confidence 4788864 577888888877764
No 157
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.56 E-value=48 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=31.8
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhc---CCCCccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLC 308 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlC 308 (324)
-.|++=-+.-.+...-..|.|+|+--++-++.--+. ...||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 367765555556667788999999999999984432 2349999
No 158
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.25 E-value=1.5e+02 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=17.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 020569 58 MPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (324)
Q Consensus 58 ~Pl~~WivgY~~~c~~~~~l~~~~~~~r~~ 87 (324)
.|+..|++|..+ .++++.++++.-|-++-
T Consensus 186 ~~~~~~vl~~~f-vl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 186 RPLMWQVLGVLF-VLVTLAIVLFPLWPRRM 214 (372)
T ss_pred CchhHHHHHHHH-HHHHHHHHhcccCcHHH
Confidence 356667776665 66666666666555443
No 159
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=27.11 E-value=32 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.0
Q ss_pred ccccchhhHHHHHHHHHHHhhheeee
Q 020569 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (324)
Q Consensus 24 ~~s~~~v~~~l~~~l~~iv~~i~vL~ 49 (324)
-|++||+ +|-++++++.+.||.
T Consensus 32 Vy~~P~m----A~~laeliav~lVl~ 53 (80)
T TIGR02741 32 VYRKPWM----AFFLAELIAVILVLW 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHHh
Confidence 4788874 567888888777664
No 160
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=26.56 E-value=59 Score=22.02 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=25.5
Q ss_pred cccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCccccccccCCC
Q 020569 268 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 316 (324)
Q Consensus 268 C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 316 (324)
|.-|-..+.+++.+ ...-+..||.+| .+|=.|+.+|..+.
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 55666666655533 224667888776 46788887776553
No 161
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.83 E-value=64 Score=25.35 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=21.5
Q ss_pred CcccccccccccCCCeeEEeC--CCCccchhhHHH
Q 020569 265 DAECCICLSAYDDGVELRELP--CGHHFHCACVDK 297 (324)
Q Consensus 265 ~~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CId~ 297 (324)
...|.||-.. .|.-++=-. |+..||..|..+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4689999887 343222222 778999999866
No 162
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.02 E-value=22 Score=29.76 Aligned_cols=50 Identities=28% Similarity=0.591 Sum_probs=28.5
Q ss_pred CCCCcccccccc-cccCCCeeEEeCCCCccchhhHHHHHhc-CC---CCcccccc
Q 020569 262 SNEDAECCICLS-AYDDGVELRELPCGHHFHCACVDKWLYI-NA---TCPLCKYN 311 (324)
Q Consensus 262 ~~e~~~C~ICL~-~y~~~~~lr~LpC~H~FH~~CId~WL~~-~~---tCPlCR~~ 311 (324)
..+|++|.||+. +|.|+-.-.--.|.--|+..|-.+--.+ |. .|-+|+..
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 457899999995 5777732222234444555554443322 32 38888653
No 163
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=23.78 E-value=1.2e+02 Score=20.44 Aligned_cols=7 Identities=57% Similarity=1.464 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 020569 183 CVALACI 189 (324)
Q Consensus 183 ~v~l~~i 189 (324)
|..++|+
T Consensus 41 cllli~i 47 (52)
T TIGR01294 41 CLLLICI 47 (52)
T ss_pred HHHHHHH
Confidence 3334333
No 164
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.42 E-value=56 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.845 Sum_probs=15.4
Q ss_pred HHHHhcCCCCccccccccC
Q 020569 296 DKWLYINATCPLCKYNILK 314 (324)
Q Consensus 296 d~WL~~~~tCPlCR~~I~~ 314 (324)
..|--.+.+||.|..++.+
T Consensus 11 ~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhHhcCccCCCCCeeEE
Confidence 4566678999999888887
No 165
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.98 E-value=66 Score=29.41 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=14.3
Q ss_pred cCCCCccccccccCCCCccccC
Q 020569 301 INATCPLCKYNILKSSSNQDRE 322 (324)
Q Consensus 301 ~~~tCPlCR~~I~~~~~~~~~~ 322 (324)
.-.+||+||..-...+.+..++
T Consensus 262 NAPiCPlCKaKsRSrNPKKpkr 283 (286)
T KOG4451|consen 262 NAPICPLCKAKSRSRNPKKPKR 283 (286)
T ss_pred CCCCCcchhhccccCCCCCccc
Confidence 4478999998666555444433
No 166
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=22.78 E-value=1.3e+02 Score=20.25 Aligned_cols=6 Identities=50% Similarity=1.486 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020569 183 CVALAC 188 (324)
Q Consensus 183 ~v~l~~ 188 (324)
|..+++
T Consensus 41 cllli~ 46 (52)
T PF04272_consen 41 CLLLIC 46 (52)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 167
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.17 E-value=9.1 Score=28.36 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=19.3
Q ss_pred cccccccccccCCCeeEEeCCCCccchhhHHHHHhcCCCCcccccccc
Q 020569 266 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 313 (324)
Q Consensus 266 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 313 (324)
..|+.|-.+++-.. +|.+...|-.. ++..+.||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 46888877755433 34444445333 456778888887764
No 168
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.82 E-value=3.9e+02 Score=20.74 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=37.2
Q ss_pred cccchhhHHHHHHHHHHHhhheeeeeccCCC-C-CCchh-hHHHHHHHHHHHHHHhhhhhhhccc
Q 020569 25 YSKPVVVLDIIWNLAFVAVAFSVMVLSQNER-P-NMPLR-LWIVGYAIQCVLHMVCVCVEYKRRS 86 (324)
Q Consensus 25 ~s~~~v~~~l~~~l~~iv~~i~vL~ls~~E~-p-~~Pl~-~WivgY~~~c~~~~~l~~~~~~~r~ 86 (324)
||-.++.-=++..++=|.| ..-+||++. | +.+.| +=++.+.+|.++.+.++...++++-
T Consensus 11 ~s~vli~GIiLL~~ACIFA---fidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~~C 72 (91)
T PHA02680 11 YSGVLICGVLLLTAACVFA---FVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYRKC 72 (91)
T ss_pred ccHHHHHHHHHHHHHHHHh---hhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444444443333 345789884 4 67777 4478899999999998766666543
No 169
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=21.78 E-value=6.5e+02 Score=23.35 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHHhhheeeeec-cCCCCCCchhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 020569 27 KPVVVLDIIWNLAFVAVAFSVMVLS-QNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (324)
Q Consensus 27 ~~~v~~~l~~~l~~iv~~i~vL~ls-~~E~p~~Pl~~WivgY~~~c~~~~~l~~~~~~~r~~ 87 (324)
.|...+-.++.++..+..+.-+.+. ++-+--.|+.-|+.+..+-..+.+.+.+..|...|.
T Consensus 45 ~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~ 106 (295)
T PF06814_consen 45 YPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINK 106 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666666655555 445557789999999999999999999888877665
No 170
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.40 E-value=66 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.6
Q ss_pred CCCCccccccccCCCCccc
Q 020569 302 NATCPLCKYNILKSSSNQD 320 (324)
Q Consensus 302 ~~tCPlCR~~I~~~~~~~~ 320 (324)
+..||.|...+...++...
T Consensus 123 ~f~Cp~Cg~~l~~~dn~~~ 141 (147)
T smart00531 123 TFTCPRCGEELEEDDNSEP 141 (147)
T ss_pred cEECCCCCCEEEEcCchhh
Confidence 3679999999988766543
No 171
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.94 E-value=57 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.839 Sum_probs=13.1
Q ss_pred CCCccchhhHHHHHhcCCCCccc
Q 020569 286 CGHHFHCACVDKWLYINATCPLC 308 (324)
Q Consensus 286 C~H~FH~~CId~WL~~~~tCPlC 308 (324)
|+|.|...= ..-......||.|
T Consensus 34 Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEccH-hhhccCCCCCCCC
Confidence 666665442 2223567789988
No 172
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.88 E-value=45 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.744 Sum_probs=10.9
Q ss_pred CCCccccccccCCCC
Q 020569 303 ATCPLCKYNILKSSS 317 (324)
Q Consensus 303 ~tCPlCR~~I~~~~~ 317 (324)
-.||+||.++.-...
T Consensus 9 LaCP~~kg~L~~~~~ 23 (60)
T COG2835 9 LACPVCKGPLVYDEE 23 (60)
T ss_pred eeccCcCCcceEecc
Confidence 459999998765443
No 173
>PLN02189 cellulose synthase
Probab=20.80 E-value=97 Score=34.47 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=35.3
Q ss_pred CCccccccccccc---CCCeeEEeC-CCCccchhhHHHHHh-cCCCCcccccccc
Q 020569 264 EDAECCICLSAYD---DGVELRELP-CGHHFHCACVDKWLY-INATCPLCKYNIL 313 (324)
Q Consensus 264 e~~~C~ICL~~y~---~~~~lr~Lp-C~H~FH~~CId~WL~-~~~tCPlCR~~I~ 313 (324)
....|.||-++.. +|+.-..-. |+---+..|.+-=-+ .++.||-||....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999975 555444444 666688999854332 4789999998776
No 174
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=20.76 E-value=34 Score=39.36 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCCCeeEEeCCCCccchhhHHHHHhcC----CCCccccccc
Q 020569 262 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI 312 (324)
Q Consensus 262 ~~e~~~C~ICL~~y~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlCR~~I 312 (324)
+.....|-+|.....+.+.+.-.-|.-.||..|+++=+..- =.||-|+..-
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45567999999998886544444477899999999988643 4599998755
No 175
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.29 E-value=1.2e+02 Score=24.76 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=19.3
Q ss_pred eeccCCCCCCchhhHHHHHHHHHHHHHHhhhhhhhc
Q 020569 49 VLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKR 84 (324)
Q Consensus 49 ~ls~~E~p~~Pl~~WivgY~~~c~~~~~l~~~~~~~ 84 (324)
+.-..-.|..|+.+.+++-.+-+..+..++.+.||+
T Consensus 49 afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 49 AFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQ 84 (118)
T ss_pred eEEecCCCCCceEEehHHHHHHHHHHHHhheeehhc
Confidence 333445566777766555554444444444444655
Done!