Query 020570
Match_columns 324
No_of_seqs 197 out of 1614
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 5.6E-47 1.9E-51 359.9 17.2 229 60-324 6-234 (325)
2 1ksk_A Ribosomal small subunit 100.0 1.9E-37 6.4E-42 281.5 9.1 186 69-324 2-188 (234)
3 1vio_A Ribosomal small subunit 100.0 8E-37 2.7E-41 278.9 8.4 184 71-324 3-187 (243)
4 2i82_A Ribosomal large subunit 100.0 1.9E-34 6.4E-39 259.0 16.4 149 137-324 12-161 (217)
5 1v9k_A Ribosomal large subunit 100.0 4.2E-33 1.4E-37 252.0 16.5 148 138-324 3-152 (228)
6 3dh3_A Ribosomal large subunit 100.0 8.8E-34 3E-38 264.6 10.8 185 68-324 4-188 (290)
7 2oml_A Ribosomal large subunit 100.0 1.4E-30 4.9E-35 228.9 1.4 145 137-324 4-151 (189)
8 2olw_A Ribosomal large subunit 100.0 2.9E-29 9.9E-34 225.2 5.6 147 135-324 30-179 (217)
9 2gml_A Ribosomal large subunit 99.9 6.2E-23 2.1E-27 185.6 5.2 123 143-324 13-135 (237)
10 2k6p_A Uncharacterized protein 98.8 7E-10 2.4E-14 85.6 0.2 74 71-145 1-82 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.6 4.9E-08 1.7E-12 80.4 7.0 57 66-123 4-60 (133)
12 1p9k_A ORF, hypothetical prote 98.6 5.8E-09 2E-13 78.2 0.7 54 68-122 18-72 (79)
13 1c05_A Ribosomal protein S4 de 98.6 3.2E-08 1.1E-12 84.0 4.7 80 70-161 50-129 (159)
14 2vqe_D 30S ribosomal protein S 98.5 3.5E-08 1.2E-12 87.3 2.9 55 69-123 97-151 (209)
15 2cqj_A BRMS2, U3 small nucleol 98.4 2.1E-07 7.1E-12 68.3 3.4 49 71-120 8-59 (71)
16 3r8n_D 30S ribosomal protein S 98.2 3.5E-07 1.2E-11 80.4 1.5 54 70-123 94-147 (205)
17 3hp7_A Hemolysin, putative; st 98.1 1.7E-06 6E-11 80.2 5.0 55 69-123 5-61 (291)
18 3bbn_D Ribosomal protein S4; s 98.1 1.2E-06 4.2E-11 76.8 2.6 54 70-123 88-141 (201)
19 3j20_D 30S ribosomal protein S 98.0 3.2E-06 1.1E-10 72.8 3.2 52 70-122 102-156 (180)
20 2xzm_D Ribosomal protein S4 co 97.9 6.4E-06 2.2E-10 71.1 3.5 51 70-121 106-157 (181)
21 3u5c_J 40S ribosomal protein S 97.6 2.3E-05 7.8E-10 68.2 2.4 50 70-120 106-158 (197)
22 3iz6_C 40S ribosomal protein S 97.2 3.5E-06 1.2E-10 73.2 -7.8 53 70-123 108-161 (195)
23 1k8w_A TRNA pseudouridine synt 96.9 0.00063 2.2E-08 63.7 4.6 70 144-256 25-94 (327)
24 3j20_E 30S ribosomal protein S 96.9 0.0021 7.1E-08 57.5 7.1 54 68-121 40-94 (243)
25 1r3e_A TRNA pseudouridine synt 96.8 0.00074 2.5E-08 62.7 3.6 70 144-256 3-72 (309)
26 2aus_C Pseudouridine synthase; 96.7 0.00081 2.8E-08 63.3 3.6 71 143-256 45-115 (334)
27 1sgv_A TRNA pseudouridine synt 96.6 0.0011 3.6E-08 61.8 3.5 71 143-256 5-75 (316)
28 3kbg_A 30S ribosomal protein S 96.6 0.0023 7.8E-08 56.1 5.3 53 68-120 5-58 (213)
29 2apo_A Probable tRNA pseudouri 96.5 0.0012 4.1E-08 62.6 3.4 71 143-256 65-135 (357)
30 3u28_A H/ACA ribonucleoprotein 96.3 0.0033 1.1E-07 60.3 4.7 75 142-259 57-132 (400)
31 2xzm_W 40S ribosomal protein S 94.1 0.086 2.9E-06 47.4 6.5 53 69-121 40-95 (260)
32 3iz6_D 40S ribosomal protein S 94.0 0.037 1.3E-06 49.9 3.9 53 69-121 40-93 (265)
33 3u5c_E RP5, S7, YS6, 40S ribos 93.6 0.038 1.3E-06 49.7 3.2 53 69-121 40-93 (261)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 89.2 0.073 2.5E-06 51.5 0.0 49 70-118 352-400 (420)
35 1h3f_A Tyrosyl-tRNA synthetase 88.9 0.59 2E-05 45.3 6.2 47 70-116 368-414 (432)
36 1fm0_D Molybdopterin convertin 88.2 0.98 3.3E-05 32.6 5.7 52 68-122 23-76 (81)
37 2ktl_A Tyrosyl-tRNA synthetase 87.4 0.55 1.9E-05 39.4 4.2 59 48-106 25-85 (164)
38 2jan_A Tyrosyl-tRNA synthetase 86.6 0.4 1.4E-05 46.5 3.4 45 72-116 357-401 (432)
39 2ts1_A Tyrosyl-tRNA synthetase 80.9 0.32 1.1E-05 47.0 0.0 48 70-117 351-398 (419)
40 3fm8_A Kinesin-like protein KI 80.6 2.3 8E-05 33.8 5.1 24 96-120 90-113 (124)
41 1wv3_A Similar to DNA segregat 71.3 4.5 0.00015 35.7 4.9 40 94-148 133-173 (238)
42 4egx_A Kinesin-like protein KI 70.7 4 0.00014 34.6 4.2 24 96-120 140-163 (184)
43 2q5w_D Molybdopterin convertin 70.0 3.6 0.00012 29.1 3.3 25 97-122 48-72 (77)
44 2hj1_A Hypothetical protein; s 69.7 1.1 3.6E-05 34.3 0.3 52 69-123 34-85 (97)
45 3po0_A Small archaeal modifier 66.6 3.7 0.00013 30.0 2.8 25 97-122 60-84 (89)
46 1rws_A Hypothetical protein PF 65.2 2.7 9.3E-05 30.2 1.7 43 69-121 29-71 (77)
47 3rpf_C Molybdopterin convertin 64.0 3.5 0.00012 29.2 2.1 50 70-122 20-69 (74)
48 4ejq_A Kinesin-like protein KI 61.6 8.2 0.00028 31.6 4.3 25 95-120 109-133 (154)
49 2cu3_A Unknown function protei 57.6 7.5 0.00026 26.6 2.9 45 69-122 12-59 (64)
50 3hvz_A Uncharacterized protein 55.8 6.8 0.00023 28.4 2.5 24 98-122 44-67 (78)
51 3dwg_C 9.5 kDa culture filtrat 55.8 8.5 0.00029 28.3 3.1 26 97-122 60-88 (93)
52 1ryj_A Unknown; beta/alpha pro 55.7 7.4 0.00025 27.3 2.6 44 69-122 22-65 (70)
53 1vjk_A Molybdopterin convertin 54.2 5.7 0.0002 29.8 1.9 24 97-121 69-92 (98)
54 2k5p_A THis protein, thiamine- 53.9 6.9 0.00024 28.3 2.2 46 69-122 16-64 (78)
55 1tyg_B YJBS; alpha beta barrel 53.1 9.7 0.00033 28.2 3.0 46 68-122 33-82 (87)
56 2kl0_A Putative thiamin biosyn 52.8 6.1 0.00021 28.2 1.8 45 69-122 13-60 (73)
57 1f0z_A THis protein; ubiquitin 52.7 6.7 0.00023 27.1 1.9 45 69-122 14-61 (66)
58 2rsx_A Uncharacterized protein 46.4 80 0.0027 26.0 7.8 52 51-105 43-95 (159)
59 3uv0_A Mutator 2, isoform B; F 46.3 8.2 0.00028 29.6 1.6 23 94-118 60-82 (102)
60 1wln_A Afadin; beta sandwich, 46.0 11 0.00037 29.2 2.4 25 95-120 79-103 (120)
61 2g1e_A Hypothetical protein TA 43.4 10 0.00034 27.5 1.7 25 97-121 57-84 (90)
62 3gqs_A Adenylate cyclase-like 43.3 14 0.00049 27.8 2.7 25 96-121 69-93 (106)
63 2k9x_A Tburm1, uncharacterized 43.2 13 0.00046 28.6 2.5 23 98-120 70-95 (110)
64 3hx1_A SLR1951 protein; P74513 42.0 18 0.0006 28.6 3.1 25 95-121 81-105 (131)
65 2kmm_A Guanosine-3',5'-BIS(dip 40.9 15 0.00052 25.3 2.3 46 69-122 17-62 (73)
66 3oug_A Aspartate 1-decarboxyla 39.3 26 0.0009 27.2 3.5 23 95-121 69-91 (114)
67 3po8_A RV0020C protein, putati 37.2 24 0.00083 26.1 3.1 24 96-121 65-88 (100)
68 2l32_A Small archaeal modifier 36.7 8.6 0.00029 27.5 0.4 43 68-121 18-60 (74)
69 2qjl_A URM1, ubiquitin-related 35.8 25 0.00085 26.2 2.9 25 97-121 66-93 (99)
70 1wgk_A Riken cDNA 2900073H19 p 32.8 8.3 0.00028 30.0 -0.3 49 73-121 48-102 (114)
71 1r21_A Antigen KI-67; beta san 31.8 25 0.00085 27.4 2.4 26 95-121 74-99 (128)
72 2jqj_A DNA damage response pro 31.6 30 0.001 27.8 3.0 28 94-121 85-112 (151)
73 2l52_A Methanosarcina acetivor 31.4 15 0.0005 27.6 0.9 25 97-121 66-93 (99)
74 2xt9_B Putative signal transdu 31.1 39 0.0013 25.7 3.4 24 95-120 72-95 (115)
75 1v8c_A MOAD related protein; r 31.1 29 0.00099 28.8 2.8 26 97-122 54-82 (168)
76 4h87_A Kanadaptin; FHA domain 30.7 33 0.0011 27.0 3.0 25 96-121 94-120 (130)
77 1uhe_A Aspartate 1-decarboxyla 28.5 26 0.00089 26.5 1.9 22 95-120 40-61 (97)
78 2og0_A Excisionase; protein-DN 28.2 60 0.002 21.5 3.5 29 71-99 3-31 (52)
79 2kb3_A Oxoglutarate dehydrogen 27.2 36 0.0012 27.3 2.7 23 96-120 108-130 (143)
80 3plx_B Aspartate 1-decarboxyla 27.0 29 0.00098 26.5 1.9 23 95-121 41-63 (102)
81 1vc3_B L-aspartate-alpha-decar 27.0 32 0.0011 26.0 2.1 22 95-120 42-63 (96)
82 1gxc_A CHK2, CDS1, serine/thre 25.1 46 0.0016 26.7 3.0 28 95-122 102-130 (149)
83 2pie_A E3 ubiquitin-protein li 24.1 55 0.0019 25.8 3.2 28 95-122 74-102 (138)
84 1g6g_A Protein kinase RAD53; b 23.8 52 0.0018 25.5 3.0 29 94-122 77-106 (127)
85 1uht_A Expressed protein; FHA 23.7 31 0.0011 26.4 1.6 27 95-121 75-102 (118)
86 1g3g_A Protien kinase SPK1; FH 23.4 62 0.0021 26.4 3.5 29 94-122 105-134 (164)
87 1dmz_A Protein (protein kinase 23.2 42 0.0014 27.3 2.4 28 94-121 81-109 (158)
88 3p42_A Predicted protein; beta 21.5 49 0.0017 28.9 2.6 49 68-123 145-203 (236)
89 3oun_A Putative uncharacterize 21.5 62 0.0021 26.5 3.1 23 96-120 127-149 (157)
90 1mzk_A Kinase associated prote 20.7 52 0.0018 26.0 2.4 27 95-121 75-110 (139)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=5.6e-47 Score=359.89 Aligned_cols=229 Identities=39% Similarity=0.621 Sum_probs=137.7
Q ss_pred EEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCcccccccCCCcee
Q 020570 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 139 (324)
Q Consensus 60 ~~~~v~~~~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~~~~~~~~~~I 139 (324)
++++|+.+++++|||+||++.++.+||+.++++|++|+|+|||+++.+++..|++||+|.+......+....+...++.|
T Consensus 6 ~~~~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 6 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEEECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeE
Confidence 45678888899999999999876899999999999999999999855899999999999997654333233345667899
Q ss_pred eccCCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCC
Q 020570 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219 (324)
Q Consensus 140 lyed~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD 219 (324)
||||++++|+|||+||+||+.++...+|+++.+..++. ... ...++++|||||
T Consensus 86 lyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~--~~~-------------------------~~~~~~~vhRLD 138 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP--PIA-------------------------DVPRAGIVHRLD 138 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCG--GGG-------------------------GSGGGGBCCCCC
T ss_pred EEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHH--hcC-------------------------CCCceeeecCCC
Confidence 99999999999999999999887777899998877652 100 123678999999
Q ss_pred CCCceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeeeEEEE
Q 020570 220 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRY 299 (324)
Q Consensus 220 ~~TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a~T~~ 299 (324)
++||||||||+|..+++.|+.+|+++.++|+|+|+|.|.+++ +|.|+.||.++..+..++.+.+ +|+.|.|+|
T Consensus 139 ~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~v~~------~gk~a~t~~ 211 (325)
T 1v9f_A 139 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHP------MGKPAVTHY 211 (325)
T ss_dssp TTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEECT------TSBCCEEEE
T ss_pred CCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCC-CCEEeeeeeECCCCCEEEEECC------CCeeEEEEE
Confidence 999999999999999999999999999999999999999977 8999999999876666666653 689999999
Q ss_pred EEEEEeCCCCEEEEEEEcCCCCCCC
Q 020570 300 KVIEILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 300 ~vl~~~~~~~~slv~~~l~TGRtHQ 324 (324)
++++.. +++|+|+|+|.||||||
T Consensus 212 ~vl~~~--~~~slv~~~l~TGR~HQ 234 (325)
T 1v9f_A 212 RIMEHF--RVHTRLRLRLETGRTHQ 234 (325)
T ss_dssp EEEEEC--SSEEEEEEEESCCCTTH
T ss_pred EEeEEc--CCeEEEEEEECCCCcHH
Confidence 999885 46999999999999999
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=1.9e-37 Score=281.46 Aligned_cols=186 Identities=20% Similarity=0.287 Sum_probs=145.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCcccccccCCCceeecc-CCcEE
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVL 147 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~~~~~~~~~~Ilye-d~~~l 147 (324)
+++|||+||++. +.+||+.++++|++|+|+|||+++++++..|++||.|.+.. ..|+|| |++++
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~l 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEE
Confidence 468999999987 58999999999999999999999866899999999998842 158999 99999
Q ss_pred EEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCCceEEE
Q 020570 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (324)
Q Consensus 148 vvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLLl 227 (324)
|+|||+||+||+.++. ..|+++.+..++ ..++++|||||++||||||
T Consensus 67 vvnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll 113 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDEPV--------------------------------AWKLHAAGRLDIDTTGLVL 113 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCCTT--------------------------------GGGCEESSCCCTTCEEEEE
T ss_pred EEECCCCCEeCCCCCC-CCcHHHHhhhhh--------------------------------cCCeeEcCCCCCCCeeEEE
Confidence 9999999999998764 667765432211 1257889999999999999
Q ss_pred eecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeeeEEEEEEEEEeCC
Q 020570 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 307 (324)
Q Consensus 228 ~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~ 307 (324)
||+|..++..|.. +++.++|+|+|+|.|.++++. ++.+... +..... ...+++|. |+++.
T Consensus 114 ~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~~--i~~~~~g-------~~~~~~---~~~~~~a~--~~~~~---- 173 (234)
T 1ksk_A 114 MTDDGQWSHRITS--PRHHCEKTYLVTLESPVADDT--AEQFAKG-------VQLHNE---KDLTKPAV--LEVIT---- 173 (234)
T ss_dssp EESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH--HHHHHHC-------CCCTTC---SSCCCCCE--EEEEE----
T ss_pred EEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHHH--HHHHHCC-------eEECCC---CcccceEE--EEEeC----
Confidence 9999887777765 678999999999999987642 3333210 011110 11355554 67664
Q ss_pred CCEEEEEEEcCCCCCCC
Q 020570 308 GGSALVEWRLETGRTHQ 324 (324)
Q Consensus 308 ~~~slv~~~l~TGRtHQ 324 (324)
.|+++|+|+||||||
T Consensus 174 --~s~~~~~l~tGR~HQ 188 (234)
T 1ksk_A 174 --PTQVRLTISEGRYHQ 188 (234)
T ss_dssp --TTEEEEEESCCCTTH
T ss_pred --CeEEEEEEccCCCHH
Confidence 489999999999999
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=8e-37 Score=278.86 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=141.8
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCcccccccCCCceeeccCCc-EEEE
Q 020570 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLVV 149 (324)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~~~~~~~~~~Ilyed~~-~lvv 149 (324)
+|||+||++. +.+||+.++++|++|+|+|||+++++++..|.+||.|.+.. ..|+|||++ ++|+
T Consensus 3 ~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~ed~~~~lvv 67 (243)
T 1vio_A 3 LRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED--------------ELLTWIEEGQYFML 67 (243)
T ss_dssp EEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT--------------EECCSSCCCCEEEE
T ss_pred ccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec--------------cccccCCCCEEEEE
Confidence 6999999987 58999999999999999999999866899999999888731 258999999 9999
Q ss_pred eCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCCceEEEee
Q 020570 150 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229 (324)
Q Consensus 150 nKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLLl~a 229 (324)
|||+|++||+.++. ..|+++.+..++ ..++++|||||++||||||||
T Consensus 68 nKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll~a 114 (243)
T 1vio_A 68 NKPQGCVCSNDDGD-YPTIYQFFDYPL--------------------------------AGKLHSAGRLDVDTTGLVLLT 114 (243)
T ss_dssp EECTTCBSSCCC---CCBGGGGSCTTG--------------------------------GGGCEESSCCCTTCEEEEEEE
T ss_pred ECCCCCEeCCCCCC-CCcHHHHHhHHh--------------------------------cCCEeEccCCCCCCeEEEEEE
Confidence 99999999998764 567655432211 125788999999999999999
Q ss_pred cCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeeeEEEEEEEEEeCCCC
Q 020570 230 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGG 309 (324)
Q Consensus 230 k~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~ 309 (324)
+|..++..+.. +++.|+|+|+|+|.|.++++ .++.+... +.+... ...+++|. |+++.
T Consensus 115 k~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~--~i~~~~~g-------~~~~~~---~~~~~~a~--~~~l~------ 172 (243)
T 1vio_A 115 DDGQWSHRITS--PKHHCEKTYLVTLADPVEEN--YSAACAEG-------ILLRGE---KEPTKPAK--LEILD------ 172 (243)
T ss_dssp SCHHHHHHHHC--TTSCCCEEEEEEESSCCCTT--HHHHHHHC-------CCCTTC---SSCCCCCE--EEECS------
T ss_pred ECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHH--HHHHHhCC-------eEECCC---CccceeEE--EEEeC------
Confidence 99876666654 67899999999999998664 23333210 011110 11456665 46553
Q ss_pred EEEEEEEcCCCCCCC
Q 020570 310 SALVEWRLETGRTHQ 324 (324)
Q Consensus 310 ~slv~~~l~TGRtHQ 324 (324)
.++++|+|.||||||
T Consensus 173 ~sl~~~~l~tGR~HQ 187 (243)
T 1vio_A 173 DYNVNLTISEGRYHQ 187 (243)
T ss_dssp SSEEEEEESCCCTTH
T ss_pred CEEEEEEEccCCcHH
Confidence 589999999999999
No 4
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=1.9e-34 Score=259.01 Aligned_cols=149 Identities=32% Similarity=0.483 Sum_probs=127.4
Q ss_pred ceeeccCCcEEEEeCCCceEEecCCC-CCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCcccc
Q 020570 137 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (324)
Q Consensus 137 ~~Ilyed~~~lvvnKPaGl~~~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (324)
++|||||++++|+|||+|++||+..+ ....++++.+..++ .++++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999998764 45568888776543 135689
Q ss_pred CCCCCCCceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeee
Q 020570 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 295 (324)
Q Consensus 216 hRLD~~TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a 295 (324)
||||++||||||||+|..+++.|+.+|+++.|+|+|+|+|.|.+++++|.|+.||.++..+..++.+.. .+++.|
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~-----~~gk~a 133 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-----ETGKPA 133 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECT-----TTCBCC
T ss_pred ecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeC-----CCCcEE
Confidence 999999999999999999999999999999999999999999998888999999987654444444432 268999
Q ss_pred EEEEEEEEEeCCCCEEEEEEEcCCCCCCC
Q 020570 296 ASRYKVIEILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 296 ~T~~~vl~~~~~~~~slv~~~l~TGRtHQ 324 (324)
.|.|++++... +.+|+|+|+|+||||||
T Consensus 134 ~t~~~vl~~~~-~~~slv~~~l~TGR~HQ 161 (217)
T 2i82_A 134 QTEYEVVEYAA-DNTARVVLKPITGRSHQ 161 (217)
T ss_dssp EEEEEEEEEET-TTEEEEEEEESSCCTTH
T ss_pred EEEEEEEEECC-CCeEEEEEEECCCCcHH
Confidence 99999999863 23899999999999999
No 5
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=4.2e-33 Score=251.98 Aligned_cols=148 Identities=30% Similarity=0.449 Sum_probs=124.6
Q ss_pred eeeccCCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCC
Q 020570 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217 (324)
Q Consensus 138 ~Ilyed~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhR 217 (324)
+|+|||++++|+|||+|++||+..+ ...++++.+...+. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 5899999999999999999999765 35577776654321 1235788999
Q ss_pred CCCCCceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCC--CCeeEEEcCCCCCCCCCeee
Q 020570 218 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN--NRIRMAAIPGSNKHGQARHA 295 (324)
Q Consensus 218 LD~~TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~--~~~~~~~~~~~~~~~~~k~a 295 (324)
||++||||||||+|..+++.|+.+|+++.|+|+|+|+|.|.++++++.|+.||.++.. +...+.+.+ +|+.|
T Consensus 52 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~~------~gk~a 125 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ------EGKPS 125 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECT------TSBCC
T ss_pred CCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEECC------CCcEE
Confidence 9999999999999999999999999999999999999999999889999999987532 223333322 68999
Q ss_pred EEEEEEEEEeCCCCEEEEEEEcCCCCCCC
Q 020570 296 ASRYKVIEILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 296 ~T~~~vl~~~~~~~~slv~~~l~TGRtHQ 324 (324)
.|.|++++.. +++|+|+|+|+||||||
T Consensus 126 ~t~~~vl~~~--~~~slv~~~l~TGR~HQ 152 (228)
T 1v9k_A 126 ETRFKVEERY--AFATLVRCSPVTGRTHQ 152 (228)
T ss_dssp CEEEEEEEEC--SSEEEEEEEESSCCTTH
T ss_pred EEEEEEEEEc--CCeEEEEEEECCCCchH
Confidence 9999999875 46999999999999999
No 6
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=8.8e-34 Score=264.56 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=141.6
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCcccccccCCCceeeccCCcEE
Q 020570 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~~~~~~~~~~Ilyed~~~l 147 (324)
++++|||+||++. +.+||+.++++|++|+|+|||+++ +++..|.+||.|.++.....+ ..|||++|+
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~-----------~~~ed~~~l 70 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP-----------REAEDLVLI 70 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECC-----------CCGGGCCEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccc-----------cccccceEE
Confidence 5689999999997 689999999999999999999999 799999999999997632111 137999999
Q ss_pred EEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCCceEEE
Q 020570 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (324)
Q Consensus 148 vvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLLl 227 (324)
|+|||+|++||+.++. ..++++.+.. ..++++|||||++||||||
T Consensus 71 vvnKP~G~~~~~~~~~-~~tl~~~l~~----------------------------------~~~~~~VhRLD~dTSGLll 115 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVDFVNH----------------------------------SKRVFPIGRLDKDSQGLIF 115 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHHHHTC----------------------------------SSCCEESSCCCTTCEEEEE
T ss_pred EEECCCccccCCCCCC-CCcHHHHhhc----------------------------------cCceeeeccCCCCCcceEE
Confidence 9999999999998754 5678776532 1367889999999999999
Q ss_pred eecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeeeEEEEEEEEEeCC
Q 020570 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 307 (324)
Q Consensus 228 ~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~ 307 (324)
||+|..++..|.. ..+.++|+|+|+|.|.++++.. . .+. .+ . .. .+ ...+++. ++.+
T Consensus 116 la~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~~i--~-~l~---~G-v--~l-~~----~~~~~~~--v~~~----- 172 (290)
T 3dh3_A 116 LTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFI--R-GMS---AG-V--PI-LG----TVTKKCK--VKKE----- 172 (290)
T ss_dssp EESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHHHH--H-HHH---TC-C--BC-SS----SBCCCCE--EEEC-----
T ss_pred EcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHHHH--H-HHh---cC-c--cc-CC----cccceEE--EEEc-----
Confidence 9999988888876 3677999999999999865421 1 010 00 0 00 10 1122332 2222
Q ss_pred CCEEEEEEEcCCCCCCC
Q 020570 308 GGSALVEWRLETGRTHQ 324 (324)
Q Consensus 308 ~~~slv~~~l~TGRtHQ 324 (324)
+.++++|.|.|||+||
T Consensus 173 -~~~~l~l~l~tGR~HQ 188 (290)
T 3dh3_A 173 -APFVFRITLVQGLNRQ 188 (290)
T ss_dssp -SSSEEEEEESCCCTTH
T ss_pred -CCeEEEEEEeCCCChH
Confidence 3479999999999998
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.96 E-value=1.4e-30 Score=228.88 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=104.4
Q ss_pred ceeeccCCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccC
Q 020570 137 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216 (324)
Q Consensus 137 ~~Ilyed~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 216 (324)
..|||||++++|+|||+||+||+.++....++.+.+. ..++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----------------------------------CSSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----------------------------------CCCceECC
Confidence 3689999999999999999999988766666643221 02567899
Q ss_pred CCCCCCceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCC-cEEEccceeCCCC--CeeEEEcCCCCCCCCCe
Q 020570 217 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDPNN--RIRMAAIPGSNKHGQAR 293 (324)
Q Consensus 217 RLD~~TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~-g~i~~pl~~~~~~--~~~~~~~~~~~~~~~~k 293 (324)
|||++||||||||+|..+++.|+.+ .+.++|+|+|+|.|.+++++ +.+..++...... ........ ....
T Consensus 49 RLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-----~~~~ 121 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-----EPAW 121 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHHHHST--TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-----CCTT
T ss_pred CCCCCCeeEEEEEcCHHHHHHHhCc--cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-----cccc
Confidence 9999999999999999999999986 68899999999999987654 3456666532111 11111111 0122
Q ss_pred eeEEEEEEEEEeCCCCEEEEEEEcCCCCCCC
Q 020570 294 HAASRYKVIEILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 294 ~a~T~~~vl~~~~~~~~slv~~~l~TGRtHQ 324 (324)
.+.|.|+++... .+++|+|+|+|+|||+||
T Consensus 122 ~~~t~~~v~~~~-~~~~slv~~~l~TGR~HQ 151 (189)
T 2oml_A 122 LWPRNPPIRERK-SIPTSWLKITLYEGRNRQ 151 (189)
T ss_dssp CCCCSSCCC-CT-TSCEEEEEEEESCCCTTH
T ss_pred cccccccccccc-CCCcEEEEEEEeeCCCHH
Confidence 346778877653 246999999999999999
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.95 E-value=2.9e-29 Score=225.20 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=97.3
Q ss_pred CCceeeccCCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccc
Q 020570 135 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214 (324)
Q Consensus 135 ~~~~Ilyed~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (324)
..+.|||||++++|+|||+|++||+.++....++.+.+. ..++++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~ 74 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYA 74 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----------------------------------CCSCEE
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----------------------------------cCCceE
Confidence 356899999999999999999999987766666643221 025678
Q ss_pred cCCCCCCCceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCC-cEEEccceeCCC--CCeeEEEcCCCCCCCC
Q 020570 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDPN--NRIRMAAIPGSNKHGQ 291 (324)
Q Consensus 215 vhRLD~~TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~-g~i~~pl~~~~~--~~~~~~~~~~~~~~~~ 291 (324)
|||||++||||||||+|..+++.|+.+ .+.|+|+|+|+|.|.+++++ +.+..++..... ....+.+... .
T Consensus 75 VhRLDr~TSGllllAk~~~~~~~L~~~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~~-----~ 147 (217)
T 2olw_A 75 AGRLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE-----P 147 (217)
T ss_dssp SSCCCTTCEEEEEEESCHHHHHHHHCT--TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECC-----C
T ss_pred CCCCCCCCeeEEEEEcCHHHHHHHHcc--cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEecC-----C
Confidence 999999999999999999999999986 57899999999999987654 345555542110 0111111110 0
Q ss_pred CeeeEEEEEEEEEeCCCCEEEEEEEcCCCCCCC
Q 020570 292 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 292 ~k~a~T~~~vl~~~~~~~~slv~~~l~TGRtHQ 324 (324)
. .+.+.+.++.....+++|+|+|+|+|||+||
T Consensus 148 ~-~~~~~~~~v~~~~~~~~slv~~~l~TGRtHQ 179 (217)
T 2olw_A 148 A-WLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 (217)
T ss_dssp T-TCCCCSSCCC-CCSSCEEEEEEEESCCCTTH
T ss_pred c-cccccccceeccCCCCcEEEEEEECcCCCHH
Confidence 0 0112221222222247899999999999999
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.87 E-value=6.2e-23 Score=185.56 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCC
Q 020570 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (324)
Q Consensus 143 d~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (324)
+++|+|+|||+|++|++.+. ...++++.+. ...++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~----------------------------------~~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----------------------------------HSKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSC----------------------------------CSSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhh----------------------------------ccCCeeEecCCCCCC
Confidence 47899999999999998765 4567766431 113578999999999
Q ss_pred ceEEEeecCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEcCCCCCCCCCeeeEEEEEEE
Q 020570 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVI 302 (324)
Q Consensus 223 SGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~G~~~~~~g~i~~pl~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl 302 (324)
|||||||+|..++..|.. ..+.|+|+|+|+|.|.++++. +.. +. .+ +.+ . +++.+.+.++++
T Consensus 58 SGLLLlT~dg~~a~~L~~--p~~~v~K~Y~a~V~G~~~~~~--i~~-l~---~G---v~l-~------~~~~~~a~~~~l 119 (237)
T 2gml_A 58 QGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEF--IRG-MS---AG---VPI-L------GTVTKKCKVKKE 119 (237)
T ss_dssp EEEEEEESCHHHHHHHHH--HHHHSCEEEEEEESSCCCHHH--HHH-HS---SC---CEE-T------TEECCCCEEEEE
T ss_pred eeEEEEEcCHHHHHHHhC--ccCCCCEEEEEEEcccCCHHH--HHH-HH---cC---eEe-C------CcccccEEEEEe
Confidence 999999999999888887 467799999999999986543 111 11 11 111 1 234444556666
Q ss_pred EEeCCCCEEEEEEEcCCCCCCC
Q 020570 303 EILAGGGSALVEWRLETGRTHQ 324 (324)
Q Consensus 303 ~~~~~~~~slv~~~l~TGRtHQ 324 (324)
. .++++|.|.|||+||
T Consensus 120 ~------~s~l~i~L~tGR~HQ 135 (237)
T 2gml_A 120 A------PFVFRITLVQGLNRQ 135 (237)
T ss_dssp E------TTEEEEEECCCSTTH
T ss_pred C------CEEEEEEEecCCcHH
Confidence 3 378999999999999
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.78 E-value=7e-10 Score=85.55 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=56.3
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCccc-c-------cccCCCceeecc
Q 020570 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A-------EAEDIPLDIVYE 142 (324)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~-~-------~~~~~~~~Ilye 142 (324)
+|||+||++.....||+.++++|.+|.|+|||+++ +++..|++||.|.+......... . .+....+.++||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lye 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHH
Confidence 58999999864335999999999999999999998 78999999999999765432110 0 122334788999
Q ss_pred CCc
Q 020570 143 DDN 145 (324)
Q Consensus 143 d~~ 145 (324)
|++
T Consensus 80 d~~ 82 (92)
T 2k6p_A 80 PKT 82 (92)
T ss_dssp ECC
T ss_pred hcC
Confidence 876
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.64 E-value=4.9e-08 Score=80.44 Aligned_cols=57 Identities=28% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 66 ~~~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
..++++|||+||.......||+.++++|..|.|+|||+++ +++..|.+||+|.|...
T Consensus 4 ~~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 (133)
T ss_dssp -CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEET
T ss_pred ccccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeC
Confidence 4467899999999864457999999999999999999998 79999999999999764
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.61 E-value=5.8e-09 Score=78.20 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred CccchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeec
Q 020570 68 AGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
.+++|||+||++. +.+ ||++++++|.+|.|+|||+++++++..|.+||.|.+..
T Consensus 18 ~~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 18 HPHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CSCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred CCCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 4559999999997 544 99999999999999999999878899999999998844
No 13
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.59 E-value=3.2e-08 Score=83.96 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=60.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeeccccCcccccccCCCceeeccCCcEEEE
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~~~~~~~~~~~~~~~~Ilyed~~~lvv 149 (324)
++|||++|.+.....||+.++++|..|.|+|||++++++++.|.+||.|.+........ .+.-.. +.+
T Consensus 50 e~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~~~-------kl~~al--~~~--- 117 (159)
T 1c05_A 50 ESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQ-------VIKEAL--EAN--- 117 (159)
T ss_dssp HHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSSCH-------HHHHHH--HTC---
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceehHH-------HHHHHH--HHh---
Confidence 48999999987545799999999999999999999988999999999999965421110 010000 112
Q ss_pred eCCCceEEecCC
Q 020570 150 NKPAHMVVHPAP 161 (324)
Q Consensus 150 nKPaGl~~~~~~ 161 (324)
+||+|.+|...+
T Consensus 118 ~~~~g~v~~d~~ 129 (159)
T 1c05_A 118 NYIPDYLSFDPE 129 (159)
T ss_dssp CCCCSSEEEETT
T ss_pred CCCCCeEEEecC
Confidence 899999987443
No 14
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.51 E-value=3.5e-08 Score=87.33 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=49.1
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
.++|||+||.+.....||+.++++|..|.|.|||++++++++.|.+||.|.|...
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK 151 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCc
Confidence 3589999999874457999999999999999999999779999999999999654
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.1e-07 Score=68.31 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=44.4
Q ss_pred chHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeec--CCEEee
Q 020570 71 LRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNC 120 (324)
Q Consensus 71 ~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~--GD~V~v 120 (324)
.|||++|.+. +.+ ||++++++|..|+|+|||++++++++.|.+ +|.|.+
T Consensus 8 ~RLD~~l~~~-gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~ 59 (71)
T 2cqj_A 8 RRLPTVLLKL-RMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 (71)
T ss_dssp EEHHHHHHHT-TCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEE
T ss_pred HHHHHHHHHh-CCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEE
Confidence 6999999998 455 999999999999999999999999999999 677775
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.18 E-value=3.5e-07 Score=80.36 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=48.6
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
++|||+||.+.....||+.++++|..|.|+|||++++.+++.|++||+|.|...
T Consensus 94 e~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 94 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp HTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred HhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 589999999864457999999999999999999999889999999999999654
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.13 E-value=1.7e-06 Score=80.19 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=49.2
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECC-E-EeccceeeeecCCEEeeecc
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSING-Q-VVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg-~-~v~~~~~~l~~GD~V~v~~~ 123 (324)
.++|||+||.+.....||++++++|.+|+|+||| + ++++++..|.+||.|.+...
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEccc
Confidence 3589999999885567999999999999999999 8 78899999999999999654
No 18
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.07 E-value=1.2e-06 Score=76.76 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=47.9
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
.+|||+||.+.....||++++++|..|+|.|||++++.+++.|.+||+|.+...
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 379999998874346999999999999999999999889999999999999654
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.97 E-value=3.2e-06 Score=72.78 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=46.5
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeecC--CEEeeec
Q 020570 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGG--DMVNCTI 122 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~G--D~V~v~~ 122 (324)
.+|||++|.+. +.+ ||+.++++|..|+|+|||++|+++++.|.+| |.|.+..
T Consensus 102 e~RLD~~L~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~ 156 (180)
T 3j20_D 102 ERRLQTIVYKK-GLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYAR 156 (180)
T ss_dssp HTSHHHHHHHH-TSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSS
T ss_pred hhhhhheeecC-cccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeC
Confidence 47999999886 455 9999999999999999999999999999999 8888843
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.88 E-value=6.4e-06 Score=71.05 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=45.0
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.+|||.+|.+. +.+ ||+.++++|..|+|.|||++|+++++.|.+||.+.|.
T Consensus 106 e~RLD~vL~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~ 157 (181)
T 2xzm_D 106 ERRLQTRVFKL-NLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSID 157 (181)
T ss_dssp TTBHHHHHHHT-TCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEE
T ss_pred ccchhHHHHhc-cccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEE
Confidence 48999999887 555 9999999999999999999999999999999854444
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.58 E-value=2.3e-05 Score=68.19 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=44.1
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeecCC--EEee
Q 020570 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNC 120 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD--~V~v 120 (324)
.+|||.+|.+. +.+ ||+.++++|..|+|+|||++|+++++.|.+|+ .|.+
T Consensus 106 e~RLD~~L~r~-G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 106 ERRLQTQVYKL-GLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TTSHHHHHHHS-STTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHHc-cccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 37999999987 454 99999999999999999999999999999995 5555
No 22
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.16 E-value=3.5e-06 Score=73.20 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=47.4
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
.+|||.+|.+. +.+ ||+.++++|..|+|+|||++|+++++.|.+||++.|.+.
T Consensus 108 e~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 108 ARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp TSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 37999999986 555 999999999999999999999999999999999888653
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.93 E-value=0.00063 Score=63.67 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=53.9
Q ss_pred CcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCCc
Q 020570 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (324)
Q Consensus 144 ~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 223 (324)
+.++++|||+|+-++ .+++.+...+ ...+.+..+.||-..|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l-------------------------------~~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIY-------------------------------NANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHT-------------------------------TCSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhh-------------------------------ccceeccCCCCCCCCe
Confidence 579999999999875 3667776654 2356788999999999
Q ss_pred eEEEeecCHHHHHHHHHHHhcCccceEEEEEEe
Q 020570 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (324)
Q Consensus 224 GLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~ 256 (324)
|+|+++-.+... +.+.+.. -.|+|.|.+.
T Consensus 66 GvL~i~~G~aTK--l~~~l~~--~~K~Y~a~~~ 94 (327)
T 1k8w_A 66 GMLPICLGEATK--FSQYLLD--SDKRYRVIAR 94 (327)
T ss_dssp EEEEEEEGGGGG--GTHHHHT--SCEEEEEEEE
T ss_pred eEEEEEECHHHh--HHHHhcc--CCcEEEEEEE
Confidence 999999986532 4444543 3899999985
No 24
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.85 E-value=0.0021 Score=57.52 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=48.8
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.+.+.|--||+.+++. .+++++++.+.+|.|.|||++++.+.+.+..+|+|++.
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEET
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEec
Confidence 4457899999998864 68999999999999999999999999999999999994
No 25
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.77 E-value=0.00074 Score=62.72 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=53.9
Q ss_pred CcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCCc
Q 020570 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (324)
Q Consensus 144 ~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 223 (324)
+.++++|||+|+-+| .+++.+...+. ..+.+..+.||-..|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 469999999999875 36777766542 246788999999999
Q ss_pred eEEEeecCHHHHHHHHHHHhcCccceEEEEEEe
Q 020570 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (324)
Q Consensus 224 GLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~ 256 (324)
|||+++-.+.. ++.+.+.. -.|+|.|.+.
T Consensus 44 GvL~i~iG~aT--Kl~~~l~~--~~K~Y~a~~~ 72 (309)
T 1r3e_A 44 GVLIIGVNQGT--RILEFYKD--LKKVYWVKMR 72 (309)
T ss_dssp EEEEEEEGGGG--GGGGGGTT--SCEEEEEEEE
T ss_pred eeEEEEECHHH--hHHHHhCc--cCcEEEEEEE
Confidence 99999998643 34444443 4899999985
No 26
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.72 E-value=0.00081 Score=63.34 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCC
Q 020570 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (324)
Q Consensus 143 d~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (324)
.+.++++|||.|+-+| .+++.+...+. ..+.+..+-||-..
T Consensus 45 ~~Gil~vdKP~g~tS~--------~vv~~vr~~~~-------------------------------~~KvGH~GTLDP~a 85 (334)
T 2aus_C 45 QYGVINLDKPPGPTSH--------EVVAWIKRILN-------------------------------LEKAGHGGTLDPKV 85 (334)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cceeccccccCCcc
Confidence 4689999999999775 36777766542 24678899999999
Q ss_pred ceEEEeecCHHHHHHHHHHHhcCccceEEEEEEe
Q 020570 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (324)
Q Consensus 223 SGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~ 256 (324)
||||+++-.+.+ ++.+.+.+ ..|+|.|.+.
T Consensus 86 tGvL~v~~g~aT--k~~~~l~~--~~K~Y~~~~~ 115 (334)
T 2aus_C 86 SGVLPVALERAT--RVVQALLP--AGKEYVALMH 115 (334)
T ss_dssp EEEEEEEEGGGG--GGGGGGTT--CCEEEEEEEE
T ss_pred ceeEEEEeChhh--hhHHHhcc--cCcEEEEEEE
Confidence 999999997532 44454443 5899999985
No 27
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.62 E-value=0.0011 Score=61.83 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=54.6
Q ss_pred CCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCC
Q 020570 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (324)
Q Consensus 143 d~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (324)
.+.++++|||.|+-+| .+++.+...+ ...+.+..+.||-..
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l-------------------------------~~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIF-------------------------------ATRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHT-------------------------------TCSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHh-------------------------------ccccccccccCCCCC
Confidence 3679999999999875 3677776654 235778899999999
Q ss_pred ceEEEeecCHHHHHHHHHHHhcCccceEEEEEEe
Q 020570 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (324)
Q Consensus 223 SGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~ 256 (324)
||||+++-.+.+ ++.+.+.. -.|+|.|.+.
T Consensus 46 tGvL~i~iG~aT--Kl~~~l~~--~~K~Y~~~~~ 75 (316)
T 1sgv_A 46 TGVLVIGIERAT--KILGLLTA--APKSYAATIR 75 (316)
T ss_dssp EEEEEEEEGGGG--GGGGGTTT--SCEEEEEEEE
T ss_pred eEEEEEEECHHH--hHHHHhCc--CCcEEEEEEE
Confidence 999999998643 34444433 5999999985
No 28
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.59 E-value=0.0023 Score=56.13 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.7
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccceeeeecCCEEee
Q 020570 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
.+.+.|--||+.+++. .+++++++.+.+|.|.|||++++.+.+.+..+|+|++
T Consensus 5 ~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 3457789999988754 6889999999999999999999999999999999999
No 29
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.54 E-value=0.0012 Score=62.60 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=54.5
Q ss_pred CCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCCC
Q 020570 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (324)
Q Consensus 143 d~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (324)
.+.++++|||+|+-++ .+++.+...+ ...+.+..+-||-..
T Consensus 65 ~~Gil~vdKP~G~TS~--------~vv~~vr~~l-------------------------------~~~KvGH~GTLDP~A 105 (357)
T 2apo_A 65 KYGVVVVDKPRGPTSH--------EVSTWVKKIL-------------------------------NLDKAGHGGTLDPKV 105 (357)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHT-------------------------------TCSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHh-------------------------------CccccccccccCCCc
Confidence 4689999999999875 3677776654 224678899999999
Q ss_pred ceEEEeecCHHHHHHHHHHHhcCccceEEEEEEe
Q 020570 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (324)
Q Consensus 223 SGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~ 256 (324)
||||+++-.+.+ ++.+.+.. ..|+|.|.+.
T Consensus 106 tGvL~v~~G~aT--k~~~~l~~--~~K~Y~~~~~ 135 (357)
T 2apo_A 106 TGVLPVALERAT--KTIPMWHI--PPKEYVCLMH 135 (357)
T ss_dssp EEEEEEEEGGGG--GGGGGTTS--SCEEEEEEEE
T ss_pred eeEEEEEeCHHH--hHHHHhcc--CCcEEEEEEE
Confidence 999999997542 34444443 6899999985
No 30
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.26 E-value=0.0033 Score=60.31 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=55.0
Q ss_pred cCCcEEEEeCCCceEEecCCCCCCCcHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCccccCCCCCC
Q 020570 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (324)
Q Consensus 142 ed~~~lvvnKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~ 221 (324)
-.+.+|++|||.|+-+| .++..+...+ ...+.+..+-||-.
T Consensus 57 ~~~Gil~ldKP~G~TS~--------dvv~~vrr~l-------------------------------~~kKvGH~GTLDP~ 97 (400)
T 3u28_A 57 ISSGVINLDKPSNPSSH--------EVVAWIKRIL-------------------------------RCEKTGHSGTLDPK 97 (400)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHH-------------------------------TCSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHh-------------------------------CcCcccccCCCCCC
Confidence 34789999999999875 3677776654 23567889999999
Q ss_pred CceEEEeecCHHHHHHHHHHHhcCccceEEEEEEe-ccc
Q 020570 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GVP 259 (324)
Q Consensus 222 TSGLLl~ak~~~~~~~l~~~f~~~~i~K~Y~A~v~-G~~ 259 (324)
.||||+++-.+. . ++.+.+.. -.|+|.|.+. |..
T Consensus 98 AtGvL~v~iG~a-T-Kl~~~l~~--~~K~Y~a~~~lG~~ 132 (400)
T 3u28_A 98 VTGCLIVCIDRA-T-RLVKSQQG--AGKEYVCIVRLHDA 132 (400)
T ss_dssp CEEEEEEEEGGG-G-GGHHHHHH--SCEEEEEEEEESSC
T ss_pred CeEEEEEEEChH-H-hHhHHhcC--CCcEEEEEEEeCCC
Confidence 999999999753 2 23333332 5899999885 543
No 31
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=94.14 E-value=0.086 Score=47.43 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=45.2
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHc--CceEECCEEeccceeeeecCCEEeee
Q 020570 69 GKLRLDAWISSRIDG-ISRARVQSSIRS--GLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~-~Sr~~~~~lI~~--G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
+.+.|--||+..+.. .+.+++++.|.+ |.|.|||++.++..+.+---|+|++.
T Consensus 40 eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~ 95 (260)
T 2xzm_W 40 ESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIE 95 (260)
T ss_dssp SCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEG
T ss_pred eeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEc
Confidence 347799999988753 688999999999 99999999987777888777999884
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.00 E-value=0.037 Score=49.91 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=43.5
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
+.+.|--||+..+.. .+.+++++.|.+|.|.|||++.++..+.+---|+|++.
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~ 93 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIP 93 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECC
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEc
Confidence 456799999988764 57789999999999999999998777777777999994
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=93.62 E-value=0.038 Score=49.73 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=46.1
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
+.+.|--||+..+.. .+.+++++.|.+|.|.|||++.++..+.+---|+|++.
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~ 93 (261)
T 3u5c_E 40 ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLD 93 (261)
T ss_dssp GEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEET
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEc
Confidence 346799999998764 57799999999999999999998888888888999994
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=89.17 E-value=0.073 Score=51.51 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEE
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V 118 (324)
+..|.++|...--.-|+++++++|.+|.|+|||++++..+..+.++|.+
T Consensus 352 ~i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4578888887522459999999999999999999998888888887654
No 35
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=88.88 E-value=0.59 Score=45.29 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=40.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCC
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD 116 (324)
+..|-++|...--.-|+++++++|.+|.|+|||.+++.++..+..++
T Consensus 368 ~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56788888876335799999999999999999999988888887765
No 36
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=88.16 E-value=0.98 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcC--ceEECCEEeccceeeeecCCEEeeec
Q 020570 68 AGKLRLDAWISSRIDGISRARVQSSIRSG--LVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G--~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
.++.++..++.... .. ...+++++..+ .|.|||+.+ ..+..|+.||+|.+..
T Consensus 23 ~~~~tv~~ll~~L~-~~-~p~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMA-AQ-SDRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHH-TT-CHHHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHH-HH-ChhHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEEeC
Confidence 34567777776642 21 13566777655 478999998 4789999999998843
No 37
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=87.36 E-value=0.55 Score=39.40 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=38.6
Q ss_pred CCCCccCCCce-EEEEEEcCC-CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEec
Q 020570 48 NREPIANYAGV-QLEETVDTK-AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106 (324)
Q Consensus 48 ~~~~~~~~~~~-~~~~~v~~~-~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~ 106 (324)
+..|..+++++ +.+..++.. -.+..|-++|...--.-|+++++++|.+|.|+|||.++.
T Consensus 25 ~~~~~~~~~~~Pt~ei~lp~s~l~g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~ 85 (164)
T 2ktl_A 25 PHAPQTNFANMPSARVTLPKSLVYDKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGV 85 (164)
T ss_dssp SCCCSCTTTSTTCEEEECCGGGGGSCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSC
T ss_pred cCCCCcccccCCceeeccchhhhcCCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEecc
Confidence 34445544433 334333221 114568888877633469999999999999999998773
No 38
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=86.60 E-value=0.4 Score=46.46 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.2
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCC
Q 020570 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (324)
Q Consensus 72 RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD 116 (324)
.|-++|...--.-|+++++++|.+|.|+|||++++.++..+.++|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 688888876335699999999999999999999987777776653
No 39
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=80.86 E-value=0.32 Score=46.98 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCE
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~ 117 (324)
+..|-++|...--.-|+++++++|.+|.|+|||++++.++..+.++|.
T Consensus 351 ~~~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 351 DVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ------------------------------------------------
T ss_pred cccHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 356777777652345999999999999999999999877777776654
No 40
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=80.59 E-value=2.3 Score=33.76 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.7
Q ss_pred CceEECCEEeccceeeeecCCEEee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
..++|||+++. ....|+.||+|.+
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEE
T ss_pred CCEEECCEEcC-CcEECCCCCEEEE
Confidence 46999999995 4588999999988
No 41
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=71.28 E-value=4.5 Score=35.68 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=29.9
Q ss_pred HcCceEECCEEeccceeeee-cCCEEeeeccccCcccccccCCCceeeccCCcEEE
Q 020570 94 RSGLVSINGQVVSKVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (324)
Q Consensus 94 ~~G~V~VNg~~v~~~~~~l~-~GD~V~v~~~~~~~~~~~~~~~~~~Ilyed~~~lv 148 (324)
.+|-|+|||++++ ....|+ .||.|.+.. +.+.+..+++++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~--------------~~~~~~~~~l~i 173 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG--------------IWLEVQADGLNV 173 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT--------------EEEEECSSEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC--------------EEEEEECCEEEE
Confidence 4788999999995 456899 999999832 345555666666
No 42
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=70.68 E-value=4 Score=34.64 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred CceEECCEEeccceeeeecCCEEee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
..++|||++|+ ....|+.||+|.+
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 46999999995 4588999999987
No 43
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=70.02 E-value=3.6 Score=29.12 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.3
Q ss_pred ceEECCEEeccceeeeecCCEEeeec
Q 020570 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 97 ~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
.|.|||+.+. .+..|+.||+|.+..
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred EEEECCEECC-CCCCcCCCCEEEEEC
Confidence 5889999994 689999999998853
No 44
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=69.67 E-value=1.1 Score=34.29 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=34.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeecc
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~~ 123 (324)
+|.++...|... + +....-+=-+....|-|||+.+ ..++.|+.||+|.|+..
T Consensus 34 ~g~TV~daI~~~-g-i~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 34 EGITVQTAITQS-G-ILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp TTCBHHHHHHHH-T-HHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEECCC
T ss_pred CCCcHHHHHHHc-C-CCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEEec
Confidence 557788888764 2 2211000012245789999999 58999999999999753
No 45
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=66.59 E-value=3.7 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred ceEECCEEeccceeeeecCCEEeeec
Q 020570 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 97 ~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
.|.|||+.+ ..+..|+.||+|.+..
T Consensus 60 ~v~VN~~~v-~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 60 NVLRNGEAA-ALGEATAAGDELALFP 84 (89)
T ss_dssp EEEETTEEC-CTTSBCCTTCEEEEEC
T ss_pred EEEECCEEC-CCCcccCCCCEEEEEC
Confidence 688999999 4789999999999854
No 46
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=65.19 E-value=2.7 Score=30.19 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=31.4
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
++.++..+|... . ++ ...=.|.|||+.+ ..+..|+.||+|.+.
T Consensus 29 ~~~Tv~dLl~~L-~-~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FN-------TESAIAKVNGKVV-LEDDEVKDGDFVEVI 71 (77)
T ss_dssp SSCCHHHHHHTT-T-CS-------SCSSCEEETTEEE-CSSSCCCSSCCCBCS
T ss_pred CCCcHHHHHHHh-C-CC-------CcCEEEEECCEEC-CCCCCcCCCCEEEEE
Confidence 346899988764 3 32 1122588999999 467999999999884
No 47
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=64.03 E-value=3.5 Score=29.25 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeec
Q 020570 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 70 ~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
+.++..++... ...+ .+.+.+..-.|.|||+.+...+..|++||+|.+..
T Consensus 20 ~~tv~~ll~~L-~~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 20 ANDLKELRAIL-QEKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CSSHHHHHHHH-HTCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred CCcHHHHHHHH-HHCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 34566665543 1111 23334556678899998556789999999998853
No 48
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=61.61 E-value=8.2 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.9
Q ss_pred cCceEECCEEeccceeeeecCCEEee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
...++|||+++. ....|+.||+|.+
T Consensus 109 ~ngt~VNG~~i~-~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 109 GADTYVNGKKVT-EPSILRSGNRIIM 133 (154)
T ss_dssp TCCEEETTEECC-SCEECCTTCEEEE
T ss_pred CCceEECCEEcC-CceECCCCCEEEE
Confidence 346999999995 4578999999988
No 49
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.61 E-value=7.5 Score=26.64 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.0
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEecc---ceeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK---VSHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~---~~~~l~~GD~V~v~~ 122 (324)
++.++..+|... . ..+ ..=.|.|||+.+.+ .+..|+.||+|.+..
T Consensus 12 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM-G-VEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH-T-BCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 457888888875 3 331 11147899999843 247899999999853
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=55.81 E-value=6.8 Score=28.39 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=20.8
Q ss_pred eEECCEEeccceeeeecCCEEeeec
Q 020570 98 VSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 98 V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
.+|||+.+ ..++.|+.||+|++..
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEEc
Confidence 57899999 6899999999999854
No 51
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=55.76 E-value=8.5 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.2
Q ss_pred ceEECCEEecc---ceeeeecCCEEeeec
Q 020570 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (324)
Q Consensus 97 ~V~VNg~~v~~---~~~~l~~GD~V~v~~ 122 (324)
.|.|||+.+.. .+..|+.||+|.+..
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 57899999853 588999999998853
No 52
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=55.66 E-value=7.4 Score=27.27 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=31.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
++.++..+|... . +.. ..=.|-+||+.+. .+..|+.||+|.+..
T Consensus 22 ~~~tv~~Ll~~l-~-~~~-------~~v~vavN~~~v~-~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 22 APRRIKDVLGEL-E-IPI-------ETVVVKKNGQIVI-DEEEIFDGDIIEVIR 65 (70)
T ss_dssp SCCBHHHHHHHT-T-CCT-------TTEEEEETTEECC-TTSBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHh-C-CCC-------CCEEEEECCEECC-CcccCCCCCEEEEEe
Confidence 347899999875 3 321 1114789999984 577999999999853
No 53
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=54.19 E-value=5.7 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEECCEEeccceeeeecCCEEeee
Q 020570 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 97 ~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.|.|||+.+ ..+..|+.||+|.+.
T Consensus 69 ~v~VNg~~v-~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYV-SWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEEE
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEE
Confidence 488999998 478999999999884
No 54
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=53.92 E-value=6.9 Score=28.28 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---eeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~---~~~l~~GD~V~v~~ 122 (324)
++.+|..+|... + +.. -+.=.|-+||+.+.+. +..|+.||+|.|..
T Consensus 16 ~~~Tl~~LL~~l-~-~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 16 ESLNVTELLSAL-K-VAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp SCEEHHHHHHHH-T-CSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCCcHHHHHHHc-C-CCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 457899999875 3 331 1111588999998543 57899999999843
No 55
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=53.13 E-value=9.7 Score=28.21 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=31.7
Q ss_pred Ccc-chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---eeeeecCCEEeeec
Q 020570 68 AGK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (324)
Q Consensus 68 ~~~-~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~---~~~l~~GD~V~v~~ 122 (324)
.++ .+|..+|... . +.. ..=.|-|||+.+.+. +..|+.||+|.+..
T Consensus 33 ~~~~~Tv~dLL~~L-~-~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 33 KKDTGTIQDLLASY-Q-LEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp SSSCCBHHHHHHHT-T-CTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCCCCcHHHHHHHh-C-CCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 344 7899999875 3 331 112477999998543 57899999999853
No 56
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=52.81 E-value=6.1 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---eeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~---~~~l~~GD~V~v~~ 122 (324)
++.+|..+|.+. . +.. +.=.|.+||+.+.+. +..|+.||+|.+..
T Consensus 13 ~~~Tl~~LL~~l-~-~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTEL-D-CTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHHT-T-CCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 457899999875 3 331 111477999988543 57899999999853
No 57
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.70 E-value=6.7 Score=27.06 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---eeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~---~~~l~~GD~V~v~~ 122 (324)
++.++..+|... . ..+ ..=.|.|||+.+.+. +..|+.||+|.+..
T Consensus 14 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 14 AGQTVHELLEQL-D-QRQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp TTCCHHHHHHHH-T-CCC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 457888888875 3 321 111477999998532 67899999998853
No 58
>2rsx_A Uncharacterized protein YOEB; inhibitor protein, hacksaw-like fold, autolysin inhibitor, D endopeptidase inhibitor, hydrolase inhibitor; NMR {Bacillus subtilis}
Probab=46.42 E-value=80 Score=26.00 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=39.6
Q ss_pred CccCCCceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCc-eEECCEEe
Q 020570 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGL-VSINGQVV 105 (324)
Q Consensus 51 ~~~~~~~~~~~~~v~~~~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~-V~VNg~~v 105 (324)
+.-.+.|..+....++-.....|.++|.+. .+.+.+.+.|..-. +-+||+-+
T Consensus 43 ~~f~~~g~~Y~~l~~d~nTkeKL~~YLn~y---fTk~ai~~~ik~~~f~e~nGkla 95 (159)
T 2rsx_A 43 GTFEYQNLQYVYMCSDLGTKAKAVNYLTPI---FTKTAIEKGFKDYHFTVSKGKLA 95 (159)
T ss_dssp CEEEETTEEEEECCTTSSSHHHHHHHHTTT---BCHHHHHHHHHTTTCEEETTEEE
T ss_pred CceEECCEEeEEcccccCCHHHHHHHHHHH---HHHHHHHHHHhccceEEECCEEE
Confidence 333456888888777777788999999885 59999999875554 45899755
No 59
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=46.30 E-value=8.2 Score=29.57 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.7
Q ss_pred HcCceEECCEEeccceeeeecCCEE
Q 020570 94 RSGLVSINGQVVSKVSHNVKGGDMV 118 (324)
Q Consensus 94 ~~G~V~VNg~~v~~~~~~l~~GD~V 118 (324)
..|.|+|||+++ -...|..||.|
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDtI 82 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENAV 82 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGCB
T ss_pred ccCcEEECCEEe--eeEEccCCccc
Confidence 468899999999 36788889873
No 60
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=45.97 E-value=11 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.9
Q ss_pred cCceEECCEEeccceeeeecCCEEee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
...++|||+++. ....|+.||+|.+
T Consensus 79 ~ngt~vNg~~i~-~~~~L~~GD~I~i 103 (120)
T 1wln_A 79 DAETYVDGQRIS-ETTMLQSGMRLQF 103 (120)
T ss_dssp SSCEEETSCBCS-SCEEECTTCEEEE
T ss_pred CCCEEECCEEcC-CCEECCCCCEEEE
Confidence 457899999995 4568999999988
No 61
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=43.43 E-value=10 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceEECCEEecc---ceeeeecCCEEeee
Q 020570 97 LVSINGQVVSK---VSHNVKGGDMVNCT 121 (324)
Q Consensus 97 ~V~VNg~~v~~---~~~~l~~GD~V~v~ 121 (324)
.|.|||+.+.+ .+..|+.||+|.+.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 58899998842 57899999999884
No 62
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=43.28 E-value=14 Score=27.77 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=20.2
Q ss_pred CceEECCEEeccceeeeecCCEEeee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.-++|||+++. ....|++||+|.+-
T Consensus 69 nGt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 69 NGVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp SCCEETTEECS-SEEECCTTCCEEET
T ss_pred CCeEECCEECC-CCeECCCCCEEEEC
Confidence 46889999985 45789999999883
No 63
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=43.20 E-value=13 Score=28.64 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.7
Q ss_pred eEECCEEec---cceeeeecCCEEee
Q 020570 98 VSINGQVVS---KVSHNVKGGDMVNC 120 (324)
Q Consensus 98 V~VNg~~v~---~~~~~l~~GD~V~v 120 (324)
|.|||+.+. ..++.|+.||+|.+
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 789997762 46789999999887
No 64
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=42.00 E-value=18 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.7
Q ss_pred cCceEECCEEeccceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.+-++|||+++. ...|+.||+|.+-
T Consensus 81 ~NGT~vNg~~i~--~~~L~~GD~I~iG 105 (131)
T 3hx1_A 81 VNGLMINGKKVQ--EHIIQTGDEIVMG 105 (131)
T ss_dssp SSCEEETTEEES--EEECCTTCEEECS
T ss_pred CCceEECCEEeE--eEECCCCCEEEEC
Confidence 357899999995 3889999999883
No 65
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=40.94 E-value=15 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=29.0
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeeec
Q 020570 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (324)
Q Consensus 69 ~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~~ 122 (324)
+|.++..++... . .....+.+ .+.|||+.+ ..+..|..||.|.+..
T Consensus 17 ~g~T~~dla~~i-~---~~l~~~~v---aa~vNg~lv-dl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 17 QGATALDFAYSL-H---SDLGDHCI---GAKVNHKLV-PLSYVLNSGDQVEVLS 62 (73)
T ss_dssp TTCBHHHHHHHH-C---SHHHHTEE---EEEETTEEC-CTTCBCCSSSBEEEEE
T ss_pred CCCcHHHHHHHH-h---hccccceE---EEEECCEEe-CCCcCcCCCCEEEEEE
Confidence 356677766553 1 11111111 346899998 5789999999998744
No 66
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=39.28 E-value=26 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=17.7
Q ss_pred cCceEECCEEeccceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.|.|.+|| .+...+++||.|.+-
T Consensus 69 Sg~I~lNG----AAAr~~~~GD~vII~ 91 (114)
T 3oug_A 69 SKTIALNG----PAARRCEIGDQLFII 91 (114)
T ss_dssp SCCEEEEG----GGGGGCCTTCEEEEE
T ss_pred CCEEEeCC----HHHhccCCCCEEEEE
Confidence 47788888 345778999998873
No 67
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=37.23 E-value=24 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.1
Q ss_pred CceEECCEEeccceeeeecCCEEeee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
..++|||+++. ...|++||+|.+-
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEET
T ss_pred CCEEECCEECc--eEECCCCCEEEEC
Confidence 46899999984 5789999999883
No 68
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=36.66 E-value=8.6 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=30.6
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccceeeeecCCEEeee
Q 020570 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.++.++..+|.+. .++...+ .|.+||+.+ ..+..+. ||+|.+.
T Consensus 18 ~~g~Tv~dLL~~L--gl~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 18 DDDGTYADLVRAV--DLSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVL 60 (74)
T ss_dssp STTCSHHHHHHTT--CCCSSCC-------CEECCCCCC-CTTSSSC-CCCEEEC
T ss_pred CCCCcHHHHHHHc--CCCcceE-------EEEECCEEC-CHHHCCC-CCEEEEE
Confidence 3567899999875 3443322 488999998 4666665 9999984
No 69
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=35.76 E-value=25 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.2
Q ss_pred ceEECCEEec---cceeeeecCCEEeee
Q 020570 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (324)
Q Consensus 97 ~V~VNg~~v~---~~~~~l~~GD~V~v~ 121 (324)
.|.|||+-+. ..++.|+.||+|.+.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 4789998763 367899999999884
No 70
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=32.82 E-value=8.3 Score=30.03 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHhccCCCCHHHHH--HHHHcC-ceEECCEEec---cceeeeecCCEEeee
Q 020570 73 LDAWISSRIDGISRARVQ--SSIRSG-LVSINGQVVS---KVSHNVKGGDMVNCT 121 (324)
Q Consensus 73 Ldk~L~~~~~~~Sr~~~~--~lI~~G-~V~VNg~~v~---~~~~~l~~GD~V~v~ 121 (324)
|-.+|.+.++...++.+. .-++.+ .|.|||+-+. ..++.|+.||+|.+.
T Consensus 48 Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 48 LLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred HHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 555555655555332210 002222 3889998653 367899999998883
No 71
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=31.80 E-value=25 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=20.8
Q ss_pred cCceEECCEEeccceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
...++|||+++. ....|+.||+|.+-
T Consensus 74 ~nGt~vNg~~i~-~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 74 TNPTQVNGSVID-EPVRLKHGDVITII 99 (128)
T ss_dssp SSCCEETTEECS-SCEECCTTEEEECS
T ss_pred CCCEEECCEECC-CcEEcCCCCEEEEC
Confidence 346789999985 35789999999883
No 72
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=31.61 E-value=30 Score=27.82 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=21.3
Q ss_pred HcCceEECCEEeccceeeeecCCEEeee
Q 020570 94 RSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 94 ~~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
....++|||+++......|+.||+|.+-
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEET
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEEC
Confidence 4556889999984224789999999883
No 73
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=31.43 E-value=15 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.4
Q ss_pred ceEECCEEec---cceeeeecCCEEeee
Q 020570 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (324)
Q Consensus 97 ~V~VNg~~v~---~~~~~l~~GD~V~v~ 121 (324)
.|.|||+.+. ..+..|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 5899998873 357889999999884
No 74
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=31.13 E-value=39 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.9
Q ss_pred cCceEECCEEeccceeeeecCCEEee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
...++|||+++. ...|+.||+|.+
T Consensus 72 ~nGt~vng~~i~--~~~L~~gd~i~i 95 (115)
T 2xt9_B 72 LNGTYVNREPVD--SAVLANGDEVQI 95 (115)
T ss_dssp SSCEEETTEECS--EEEECTTCEEEE
T ss_pred CCCeEECCEEcc--eEECCCCCEEEE
Confidence 346789999984 578999999988
No 75
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=31.12 E-value=29 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=20.8
Q ss_pred ceEECCEEecc---ceeeeecCCEEeeec
Q 020570 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (324)
Q Consensus 97 ~V~VNg~~v~~---~~~~l~~GD~V~v~~ 122 (324)
.|.|||+.+.. .+..|+.||+|.+..
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 58899999843 278999999998843
No 76
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=30.70 E-value=33 Score=27.01 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=18.5
Q ss_pred CceEECCEEeccce--eeeecCCEEeee
Q 020570 96 GLVSINGQVVSKVS--HNVKGGDMVNCT 121 (324)
Q Consensus 96 G~V~VNg~~v~~~~--~~l~~GD~V~v~ 121 (324)
.-.+|||+++. ++ ..|+.||+|.+-
T Consensus 94 NGT~vNg~ri~-~~~~~~L~~GD~I~~G 120 (130)
T 4h87_A 94 HGTFLNKTRIP-PRTYCRVHVGHVVRFG 120 (130)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEET
T ss_pred CceEECCEECC-CCceeECCCCCEEEEC
Confidence 45668898884 33 469999999883
No 77
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=28.47 E-value=26 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.2
Q ss_pred cCceEECCEEeccceeeeecCCEEee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
.|.|.+|| .+...+++||.|.+
T Consensus 40 SG~I~lNG----AAArl~~~GD~vII 61 (97)
T 1uhe_A 40 RGEICVNG----AAARKVAIGDVVII 61 (97)
T ss_dssp TTCEEEEG----GGGGGCCTTCEEEE
T ss_pred CCeEEEch----HHHccCCCCCEEEE
Confidence 68899999 34577899999887
No 78
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=28.23 E-value=60 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.1
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceE
Q 020570 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (324)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~ 99 (324)
.+|++|-...|...|.+-+++++++|.|.
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 35888888765457999999999999985
No 79
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=27.22 E-value=36 Score=27.26 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=18.2
Q ss_pred CceEECCEEeccceeeeecCCEEee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
..++|||+++. ...|+.||+|.+
T Consensus 108 NGT~VNg~~i~--~~~L~~GD~I~i 130 (143)
T 2kb3_A 108 NGTYVNREPRN--AQVMQTGDEIQI 130 (143)
T ss_dssp SCCEETTEECS--EEECCTTEEEEE
T ss_pred CCeEECCEEcc--eEECCCCCEEEE
Confidence 34567888884 578999999988
No 80
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=27.02 E-value=29 Score=26.50 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=18.4
Q ss_pred cCceEECCEEeccceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v~ 121 (324)
.|.|.+|| .+.+.+++||.|.+.
T Consensus 41 SG~I~lNG----AAArl~~~GD~vII~ 63 (102)
T 3plx_B 41 EGVVCLNG----AAARLAEVGDKVIIM 63 (102)
T ss_dssp TTCEEEEG----GGGGGCCTTCEEEEE
T ss_pred CCEEEeCc----HHHhccCCCCEEEEE
Confidence 58899999 345779999998873
No 81
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=26.96 E-value=32 Score=25.98 Aligned_cols=22 Identities=50% Similarity=0.765 Sum_probs=17.8
Q ss_pred cCceEECCEEeccceeeeecCCEEee
Q 020570 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 95 ~G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
.|.|.+|| .+.+.+++||.|.+
T Consensus 42 SG~I~lNG----AAArl~~~GD~vII 63 (96)
T 1vc3_B 42 SGVIGING----AAAHLVKPGDLVIL 63 (96)
T ss_dssp TTCEEEEG----GGGGTCCTTCEEEE
T ss_pred CCeEEEch----HHHccCCCCCEEEE
Confidence 57899999 35577899999887
No 82
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=25.13 E-value=46 Score=26.68 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=21.2
Q ss_pred cCceEECCEEecc-ceeeeecCCEEeeec
Q 020570 95 SGLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (324)
Q Consensus 95 ~G~V~VNg~~v~~-~~~~l~~GD~V~v~~ 122 (324)
..-.+|||+++.+ ....|+.||+|.+-.
T Consensus 102 tNGT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 102 GNGTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp SSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CCCeEECCEECCCCCeEECCCCCEEEECC
Confidence 3467999999842 256899999998843
No 83
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=24.11 E-value=55 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.2
Q ss_pred cCceEECCEEecc-ceeeeecCCEEeeec
Q 020570 95 SGLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (324)
Q Consensus 95 ~G~V~VNg~~v~~-~~~~l~~GD~V~v~~ 122 (324)
..-.+|||+++.. ....|+.||+|.+-.
T Consensus 74 ~NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 74 LNGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SSCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 3468899999842 147899999999954
No 84
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=23.84 E-value=52 Score=25.46 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.0
Q ss_pred HcCceEECCEEecc-ceeeeecCCEEeeec
Q 020570 94 RSGLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (324)
Q Consensus 94 ~~G~V~VNg~~v~~-~~~~l~~GD~V~v~~ 122 (324)
.....+|||+++.. ....|..||+|.+-.
T Consensus 77 S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred CcCCeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 45568899999843 147899999999844
No 85
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=23.69 E-value=31 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=19.6
Q ss_pred cCceEECCEEecc-ceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSK-VSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~-~~~~l~~GD~V~v~ 121 (324)
..-.+|||+++.. ....|+.||+|.+-
T Consensus 75 ~nGT~vng~~l~~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 75 SNGTLLNSNALDPETSVNLGDGDVIKLG 102 (118)
T ss_dssp SSCCEESSSBCCTTCEEECCTTEEEEET
T ss_pred CCCeEECCEECCCCCeEEcCCCCEEEEC
Confidence 3457789988842 15679999999883
No 86
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=23.40 E-value=62 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=21.8
Q ss_pred HcCceEECCEEeccc-eeeeecCCEEeeec
Q 020570 94 RSGLVSINGQVVSKV-SHNVKGGDMVNCTI 122 (324)
Q Consensus 94 ~~G~V~VNg~~v~~~-~~~l~~GD~V~v~~ 122 (324)
..+..+|||+++... ...|..||+|.+-.
T Consensus 105 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 134 (164)
T 1g3g_A 105 STNGTWLNGQKVEKNSNQLLSQGDEITVGV 134 (164)
T ss_dssp CSSCEEETTEEECTTEEEECCTTCEEEESC
T ss_pred CCCCeEECCEEcCCCCceEcCCCCEEEECC
Confidence 456688999998421 37899999998843
No 87
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=23.20 E-value=42 Score=27.26 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=21.7
Q ss_pred HcCceEECCEEecc-ceeeeecCCEEeee
Q 020570 94 RSGLVSINGQVVSK-VSHNVKGGDMVNCT 121 (324)
Q Consensus 94 ~~G~V~VNg~~v~~-~~~~l~~GD~V~v~ 121 (324)
...-.+|||+++.+ ....|+.||+|.+.
T Consensus 81 StNGT~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 81 GTNVSYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp STTCCEETTEECCSSEEEECCSSCCEESC
T ss_pred CcCCeEECCEEcCCCceEEcCCCCEEEEe
Confidence 45677899999842 14789999999984
No 88
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=21.53 E-value=49 Score=28.95 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=34.6
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEE---CCEEeccc-------eeeeecCCEEeeecc
Q 020570 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSI---NGQVVSKV-------SHNVKGGDMVNCTIS 123 (324)
Q Consensus 68 ~~~~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~V---Ng~~v~~~-------~~~l~~GD~V~v~~~ 123 (324)
..++++..||... +..++ -.+.+|+| ||.+.... ...+.|||.|.|.+.
T Consensus 145 ~~g~~~~dYi~~a-gg~~~------Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 145 LAGRSVTDYLQDH-PRLAG------ADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFS 203 (236)
T ss_dssp CTTCCHHHHHTTS-CBCTT------BCSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBC
T ss_pred cCCCCHHHHHHhC-CCCCC------CCCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCC
Confidence 5688999999887 55552 34667776 88765321 457999999998553
No 89
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=21.46 E-value=62 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.5
Q ss_pred CceEECCEEeccceeeeecCCEEee
Q 020570 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (324)
Q Consensus 96 G~V~VNg~~v~~~~~~l~~GD~V~v 120 (324)
.-++|||+++. ...|+.||+|.+
T Consensus 127 NGT~VNG~~i~--~~~L~~GD~I~l 149 (157)
T 3oun_A 127 NGTTVNNAPVQ--EWQLADGDVIRL 149 (157)
T ss_dssp SCCEETTEECS--EEECCTTCEEEE
T ss_pred CCeEECCEECc--eEECCCCCEEEE
Confidence 35678898884 578999999988
No 90
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.74 E-value=52 Score=25.98 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=20.9
Q ss_pred cCceEECCEEecc---------ceeeeecCCEEeee
Q 020570 95 SGLVSINGQVVSK---------VSHNVKGGDMVNCT 121 (324)
Q Consensus 95 ~G~V~VNg~~v~~---------~~~~l~~GD~V~v~ 121 (324)
..-.+|||+++.. ....|+.||+|.+-
T Consensus 75 ~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG 110 (139)
T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLG 110 (139)
T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECS
T ss_pred CCCEEECCEECcCcccccccCCceEECCCCCEEEEC
Confidence 4567899999852 25789999999883
Done!