BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020571
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
          Length = 571

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 5   ENKLESLPASIGCLSSLEFLHLTRNNLS-LPELPVLLSHIEARNCKQLQSLPELPSCPEE 63
           +N+L +LP      +SL+ L +  N L+ LPELP LL +I A N  QL  LPELP+  E 
Sbjct: 109 DNRLSTLPE---LPASLKHLDVDNNQLTXLPELPALLEYINADN-NQLTXLPELPTSLEV 164

Query: 64  L 64
           L
Sbjct: 165 L 165



 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNLS-LPELPVLLSHIEARNCKQLQSLPELPS 59
           +++  N+L  LP     L   E+++   N L+ LPELP  L  +  RN  QL  LPELP 
Sbjct: 125 LDVDNNQLTXLPELPALL---EYINADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPE 180

Query: 60  CPEELD--TSILESL 72
             E LD  T++LESL
Sbjct: 181 SLEALDVSTNLLESL 195



 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 7   KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNC-KQLQSLPELPSCPEEL 64
            L SLP ++     +  L +T+N L SLPELP  L +++A  C  +L +LPELP+  + L
Sbjct: 70  NLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDA--CDNRLSTLPELPASLKHL 125

Query: 65  D 65
           D
Sbjct: 126 D 126


>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 279

 Score = 31.6 bits (70), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 3   LVENKLESLPASI-GCLSSLEFLHLTRNNL-SLP----ELPVLLSHIEARNCKQLQSLPE 56
           LVEN+L+SLP  +   L++L +L+L  N L SLP    +    L+ ++  N  QLQSLPE
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN-NQLQSLPE 174


>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
           Novel E3 Ligase
          Length = 622

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 6   NKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEEL 64
           N+L SLP        L+ L ++ N L SLP LP  L  + A N  QL SLP LPS  +EL
Sbjct: 131 NQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYN-NQLTSLPMLPSGLQEL 186

Query: 65  DTS 67
             S
Sbjct: 187 SVS 189


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 3   LVENKLESLPASI-GCLSSLEFLHLTRNNL-SLPE--LPVLLSHIEAR-NCKQLQSLPE 56
           LVEN+L+SLP  +   L++L +L+L  N L SLP+     L +  E   +  QLQSLPE
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174


>pdb|3P0R|A Chain A, Crystal Structure Of Azoreductase From Bacillus Anthracis
           Str. Sterne
          Length = 211

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)

Query: 200 ADDYCFLFADEFIESDHVLLGFSPCWNVGLP 230
           AD Y     ++F+E+D V+ GF P WN+ +P
Sbjct: 83  ADKYL----NQFLEADKVVFGF-PLWNLTIP 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,283,811
Number of Sequences: 62578
Number of extensions: 358040
Number of successful extensions: 668
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 20
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)