Query 020571
Match_columns 324
No_of_seqs 216 out of 1923
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 5.4E-25 1.2E-29 239.4 19.5 257 1-274 783-1101(1153)
2 PLN03210 Resistant to P. syrin 98.1 3.8E-06 8.2E-11 92.6 6.9 94 1-95 616-717 (1153)
3 PRK15387 E3 ubiquitin-protein 97.5 0.0001 2.2E-09 77.6 5.1 66 1-69 206-272 (788)
4 PF12799 LRR_4: Leucine Rich r 97.5 6.9E-05 1.5E-09 50.0 2.3 35 1-35 6-41 (44)
5 PLN03150 hypothetical protein; 97.5 0.00014 3E-09 75.4 5.6 79 1-79 423-510 (623)
6 PRK15387 E3 ubiquitin-protein 97.5 0.00013 2.9E-09 76.8 5.3 85 1-92 227-312 (788)
7 PLN00113 leucine-rich repeat r 97.4 0.00016 3.4E-09 78.3 5.2 70 1-70 145-223 (968)
8 PRK15370 E3 ubiquitin-protein 97.4 0.00025 5.4E-09 74.7 6.4 87 1-92 204-293 (754)
9 PRK15386 type III secretion pr 97.4 0.00026 5.6E-09 69.2 5.3 36 2-39 78-116 (426)
10 KOG4658 Apoptotic ATPase [Sign 97.3 7.9E-05 1.7E-09 79.7 1.5 68 1-68 576-651 (889)
11 PLN00113 leucine-rich repeat r 97.3 0.00021 4.6E-09 77.2 4.7 75 2-76 505-588 (968)
12 PF13855 LRR_8: Leucine rich r 97.3 0.0001 2.2E-09 52.3 1.1 48 1-48 6-59 (61)
13 PRK15370 E3 ubiquitin-protein 97.3 0.00029 6.2E-09 74.3 4.8 74 1-78 225-301 (754)
14 PRK15386 type III secretion pr 97.1 0.00042 9.1E-09 67.8 4.3 66 15-80 48-115 (426)
15 PLN03150 hypothetical protein; 97.0 0.00089 1.9E-08 69.4 5.5 75 1-75 447-531 (623)
16 KOG0618 Serine/threonine phosp 96.9 0.00021 4.5E-09 75.0 -0.1 42 1-42 388-431 (1081)
17 KOG0472 Leucine-rich repeat pr 96.7 0.00053 1.1E-08 66.2 1.1 88 1-89 440-535 (565)
18 PF12799 LRR_4: Leucine Rich r 96.7 0.00061 1.3E-08 45.4 1.1 38 19-57 1-42 (44)
19 KOG0618 Serine/threonine phosp 96.7 0.00035 7.5E-09 73.3 -0.7 69 1-71 412-488 (1081)
20 PF14580 LRR_9: Leucine-rich r 96.7 0.0014 3.1E-08 56.9 3.2 71 1-75 24-103 (175)
21 KOG0444 Cytoskeletal regulator 96.6 0.00045 9.8E-09 70.0 -0.1 75 3-79 85-169 (1255)
22 KOG0617 Ras suppressor protein 96.6 0.0007 1.5E-08 58.6 0.8 66 2-68 39-111 (264)
23 KOG0617 Ras suppressor protein 96.3 0.00085 1.8E-08 58.1 -0.3 47 1-47 61-111 (264)
24 KOG0444 Cytoskeletal regulator 96.2 0.0016 3.4E-08 66.2 0.9 79 1-80 273-383 (1255)
25 KOG0472 Leucine-rich repeat pr 96.2 0.00038 8.3E-09 67.2 -3.6 56 2-58 166-225 (565)
26 PF00560 LRR_1: Leucine Rich R 96.1 0.0016 3.4E-08 36.7 0.1 21 20-40 1-22 (22)
27 PF13855 LRR_8: Leucine rich r 95.9 0.0047 1E-07 43.6 1.9 50 19-69 1-59 (61)
28 COG4886 Leucine-rich repeat (L 95.5 0.0056 1.2E-07 59.4 1.3 75 2-78 122-204 (394)
29 KOG1259 Nischarin, modulator o 95.4 0.0042 9.2E-08 58.1 -0.1 73 1-76 289-368 (490)
30 KOG0532 Leucine-rich repeat (L 95.2 0.0039 8.4E-08 62.7 -1.0 71 4-76 106-182 (722)
31 PF14580 LRR_9: Leucine-rich r 95.2 0.016 3.5E-07 50.4 2.9 32 2-34 48-80 (175)
32 COG4886 Leucine-rich repeat (L 95.1 0.0096 2.1E-07 57.7 1.4 68 1-69 145-219 (394)
33 KOG0532 Leucine-rich repeat (L 94.2 0.009 1.9E-07 60.2 -1.0 53 1-55 126-182 (722)
34 PF13504 LRR_7: Leucine rich r 93.6 0.039 8.5E-07 29.0 1.1 16 19-34 1-17 (17)
35 KOG4658 Apoptotic ATPase [Sign 92.5 0.073 1.6E-06 57.4 2.3 69 8-77 559-636 (889)
36 KOG4579 Leucine-rich repeat (L 92.3 0.03 6.6E-07 47.0 -0.7 55 2-57 59-118 (177)
37 smart00370 LRR Leucine-rich re 92.1 0.12 2.5E-06 29.9 1.9 20 18-37 1-21 (26)
38 smart00369 LRR_TYP Leucine-ric 92.1 0.12 2.5E-06 29.9 1.9 20 18-37 1-21 (26)
39 KOG4194 Membrane glycoprotein 91.8 0.041 8.9E-07 55.8 -0.5 35 1-35 298-334 (873)
40 KOG0531 Protein phosphatase 1, 90.8 0.14 3.1E-06 50.3 2.1 65 2-68 101-171 (414)
41 KOG1259 Nischarin, modulator o 90.4 0.08 1.7E-06 49.8 -0.0 66 1-68 312-383 (490)
42 KOG4237 Extracellular matrix p 89.5 0.13 2.9E-06 49.9 0.7 55 2-56 73-133 (498)
43 KOG1859 Leucine-rich repeat pr 89.1 0.042 9E-07 57.1 -3.2 72 2-76 170-248 (1096)
44 cd00116 LRR_RI Leucine-rich re 89.1 0.2 4.4E-06 46.4 1.6 92 1-93 113-232 (319)
45 KOG4194 Membrane glycoprotein 88.0 0.33 7.1E-06 49.6 2.3 37 1-37 83-121 (873)
46 cd00116 LRR_RI Leucine-rich re 87.6 0.4 8.8E-06 44.4 2.6 70 1-70 170-261 (319)
47 KOG1644 U2-associated snRNP A' 86.8 0.54 1.2E-05 41.9 2.7 66 1-68 47-122 (233)
48 KOG0531 Protein phosphatase 1, 82.7 0.77 1.7E-05 45.1 2.0 72 3-76 79-156 (414)
49 KOG1859 Leucine-rich repeat pr 82.5 0.24 5.2E-06 51.7 -1.6 66 1-68 192-263 (1096)
50 KOG4579 Leucine-rich repeat (L 81.9 0.15 3.2E-06 42.9 -2.7 76 1-78 32-118 (177)
51 KOG2120 SCF ubiquitin ligase, 81.0 0.16 3.5E-06 47.8 -3.2 87 12-98 227-329 (419)
52 smart00364 LRR_BAC Leucine-ric 79.3 1.3 2.8E-05 26.0 1.4 17 19-35 2-19 (26)
53 KOG2739 Leucine-rich acidic nu 73.6 2.4 5.1E-05 39.0 2.2 59 15-73 61-130 (260)
54 KOG2739 Leucine-rich acidic nu 70.4 2.7 5.8E-05 38.7 1.8 76 19-96 43-130 (260)
55 KOG3207 Beta-tubulin folding c 67.1 1.8 3.9E-05 42.8 -0.0 12 18-29 221-232 (505)
56 KOG3665 ZYG-1-like serine/thre 64.3 4.1 8.9E-05 43.0 2.0 25 17-42 171-196 (699)
57 KOG2123 Uncharacterized conser 64.2 1.8 4E-05 40.5 -0.5 40 1-42 24-64 (388)
58 smart00365 LRR_SD22 Leucine-ri 63.9 5.6 0.00012 23.3 1.7 17 18-34 1-18 (26)
59 PF13516 LRR_6: Leucine Rich r 61.8 5.3 0.00011 22.3 1.3 14 18-31 1-14 (24)
60 KOG3665 ZYG-1-like serine/thre 53.8 8.3 0.00018 40.8 2.1 67 1-68 178-259 (699)
61 smart00368 LRR_RI Leucine rich 53.6 11 0.00023 22.2 1.7 13 19-31 2-14 (28)
62 KOG1644 U2-associated snRNP A' 49.8 9.6 0.00021 34.2 1.5 49 1-55 69-119 (233)
63 KOG2982 Uncharacterized conser 47.9 9.4 0.0002 36.3 1.2 43 1-43 76-126 (418)
64 KOG0473 Leucine-rich repeat pr 47.4 2 4.3E-05 39.3 -3.1 42 1-42 70-112 (326)
65 KOG4237 Extracellular matrix p 43.1 4 8.6E-05 40.0 -2.0 42 1-42 96-141 (498)
66 KOG2120 SCF ubiquitin ligase, 35.4 3.3 7.1E-05 39.3 -3.8 48 19-74 185-249 (419)
67 KOG3207 Beta-tubulin folding c 35.2 24 0.00052 35.1 1.9 44 2-47 228-280 (505)
68 PF13306 LRR_5: Leucine rich r 35.2 29 0.00062 27.2 2.1 20 15-35 31-51 (129)
69 smart00367 LRR_CC Leucine-rich 26.1 54 0.0012 18.5 1.7 12 86-97 6-17 (26)
70 TIGR00864 PCC polycystin catio 24.4 51 0.0011 40.0 2.4 30 2-31 1-31 (2740)
71 KOG4341 F-box protein containi 20.6 8.6 0.00019 38.0 -3.9 79 19-97 138-231 (483)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=5.4e-25 Score=239.42 Aligned_cols=257 Identities=20% Similarity=0.248 Sum_probs=157.7
Q ss_pred CeecCC-CCCccchhhcCCCCCCEEEccCC-Cc-cCCcccccCCc---cccccccccCcCCCCCCC--------------
Q 020571 1 MNLVEN-KLESLPASIGCLSSLEFLHLTRN-NL-SLPELPVLLSH---IEARNCKQLQSLPELPSC-------------- 60 (324)
Q Consensus 1 ~~L~~~-~l~~lP~~i~~l~~L~~L~L~~n-~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~s-------------- 60 (324)
|+|++| .+.++|.+++++++|+.|+|++| ++ .||..+ ++++ |+|++|.+|+.+|.++.+
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 356666 56678888888888888888887 45 888765 3443 778888777777654433
Q ss_pred ---------CcEEecCCCCCCCccCCCCCc-ccccceeccCCcccchhhhhhhhHH------------------------
Q 020571 61 ---------PEELDTSILESLSKHFRPTAS-RKLTYFMFTNCLKLNKSGNNILADS------------------------ 106 (324)
Q Consensus 61 ---------L~~L~~~~C~sL~~~~~~~~~-~~~~~l~~~nC~~L~~~~~~~i~~~------------------------ 106 (324)
|+.|++.+|..|+.++..... ..+..+.|.+|.+|.......+...
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~ 941 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF 941 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccccc
Confidence 444555556666655543221 2233444555554432111000000
Q ss_pred -----HHHHHHHHHHHHHHhhccccceeeeecCCcccccCCCceEE-EeCCCCCCCCcccceeEEEEEeecCCCCCCCCC
Q 020571 107 -----QQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIA-IQLPPHCCNKNFIGFALCVVIQLEEGFDADADE 180 (324)
Q Consensus 107 -----~~~~~q~~~~~~~~~~~g~~~~~~~~IP~Wf~~qs~gssit-i~Lp~~w~~~~~~Gfa~C~v~~~~~~~~~~~~~ 180 (324)
+....|.. .....+|| .+||+||.||+.|++++ |.||+.|+...|.||++|+|+++....+. ...
T Consensus 942 ~L~~~a~l~~~~~--~~~~~l~g------~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-~~~ 1012 (1153)
T PLN03210 942 NLDQEALLQQQSI--FKQLILSG------EEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-SVS 1012 (1153)
T ss_pred CCCchhhhccccc--ceEEECCC------ccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccC-CCc
Confidence 00000000 01234566 99999999999999998 99999999888999999999988765442 235
Q ss_pred ceeEEEEEEeeCCCCeeeeccccCccccCCcccCCeEEEEEEcCCCCCCCC--CCCccceeEEEEEEeecCCCCCCCceE
Q 020571 181 CFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPD--PDVGHHTTVSFQFSLYYPYLASPRLHK 258 (324)
Q Consensus 181 ~~i~C~~~~~~~~g~~~~~~~~~~~~~~~~~~~sDHl~l~y~~~~~~~~~~--~~~~~~~evsFef~~~~~~~~~~~~~~ 258 (324)
+.+.|.|+|+++.|+.++.....+.| ......+|+++|.... ...... ..+.++.+|+++|.+... ...++
T Consensus 1013 ~~~~~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~~ 1085 (1153)
T PLN03210 1013 FDIQVCCRFIDRLGNHFDSPYQPHVF--SVTKKGSHLVIFDCCF-PLNEDNAPLAELNYDHVDIQFRLTNK----NSQLK 1085 (1153)
T ss_pred eeEEEEEEEECCCCCccccCCCceeE--eeeccccceEEecccc-cccccccchhccCCceeeEEEEEecC----CCCeE
Confidence 78899999998877654321111111 1233466776665332 111111 123457788888877642 23479
Q ss_pred EEeeccEEEeeCCCCC
Q 020571 259 LKCCGVCPAVLNPSKT 274 (324)
Q Consensus 259 VK~CGV~lIy~~~~~~ 274 (324)
||+|||+++|..++..
T Consensus 1086 ~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1086 LKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred EEeeeEEEeccCCCcc
Confidence 9999999999666543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=3.8e-06 Score=92.56 Aligned_cols=94 Identities=23% Similarity=0.370 Sum_probs=61.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCC-c-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNN-L-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~-~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
|+|+++.|..+|..+..+++|+.|+|++|+ + .+|. +..+++ |+|++|..|..+|.. ..+|+.|++.+|..|
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 355666666777777777777777777654 4 6664 555544 777777777777643 256677777777777
Q ss_pred CccCCCCCcccccceeccCCccc
Q 020571 73 SKHFRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~nC~~L 95 (324)
+.+|.......+..|.+.+|.+|
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRL 717 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCc
Confidence 77776554455566777777654
No 3
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.52 E-value=0.0001 Score=77.58 Aligned_cols=66 Identities=38% Similarity=0.502 Sum_probs=41.7
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C 69 (324)
+||++++|+.||..+. ++|+.|+|.+|++ .||....+|..|+|++ ++|.++|.+|++|+.|++.++
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~-N~LtsLP~lp~sL~~L~Ls~N 272 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSG-NQLTSLPVLPPGLLELSIFSN 272 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecC-CccCcccCcccccceeeccCC
Confidence 4677777878887665 3566777776666 6666555554466655 356666666666666655554
No 4
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=6.9e-05 Score=49.98 Aligned_cols=35 Identities=29% Similarity=0.586 Sum_probs=29.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~ 35 (324)
++|++|+|+++|..++.|++|+.|+|++|.+ .+|.
T Consensus 6 L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 6 LDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp EEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred EEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4788889999988899999999999999988 7764
No 5
>PLN03150 hypothetical protein; Provisional
Probab=97.49 E-value=0.00014 Score=75.37 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=64.8
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.|. .+|.+|+.+++|+.|+|++|++ .+|..++.|++ |+|+++.....+|+. .++|+.|+++++.-
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 467888886 7999999999999999999999 89998988887 999988776788863 36889999998765
Q ss_pred CCccCCCC
Q 020571 72 LSKHFRPT 79 (324)
Q Consensus 72 L~~~~~~~ 79 (324)
...+|..+
T Consensus 503 ~g~iP~~l 510 (623)
T PLN03150 503 SGRVPAAL 510 (623)
T ss_pred cccCChHH
Confidence 55666543
No 6
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.48 E-value=0.00013 Score=76.76 Aligned_cols=85 Identities=29% Similarity=0.272 Sum_probs=68.2
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT 79 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~ 79 (324)
|+|++|+|+.||.. +++|++|+|++|++ .||..+.+|..|+|+++ .+..+|.+|.+|+.|++.++ .|+.+|...
T Consensus 227 L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~p 301 (788)
T PRK15387 227 LVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGN-QLTSLPVLP 301 (788)
T ss_pred EEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCC-chhhhhhchhhcCEEECcCC-ccccccccc
Confidence 46788999999963 58899999999999 99987777777889885 58899999999999999986 677777532
Q ss_pred CcccccceeccCC
Q 020571 80 ASRKLTYFMFTNC 92 (324)
Q Consensus 80 ~~~~~~~l~~~nC 92 (324)
..+..|+++++
T Consensus 302 --~~L~~LdLS~N 312 (788)
T PRK15387 302 --PGLQELSVSDN 312 (788)
T ss_pred --cccceeECCCC
Confidence 34566777664
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.42 E-value=0.00016 Score=78.28 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=44.5
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~ 70 (324)
|+|++|.+. .+|..++.+++|++|+|++|.+ .+|.++.++++ |+|++|.....+|.. ..+|+.|++.+|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 356666654 5677777777777777777776 67777776665 777766655555532 2455555555543
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.41 E-value=0.00025 Score=74.72 Aligned_cols=87 Identities=26% Similarity=0.355 Sum_probs=52.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccccc-CCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL-LSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFR 77 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~-L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~ 77 (324)
|+|++|+|+.+|..+. .+|+.|+|++|++ .||.++.. |..|+|++| .+..||. +|.+|+.|++++ ..|..+|.
T Consensus 204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~-N~L~~LP~ 279 (754)
T PRK15370 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN-RITELPERLPSALQSLDLFH-NKISCLPE 279 (754)
T ss_pred EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCC-ccCcCChhHhCCCCEEECcC-CccCcccc
Confidence 3566666666666554 4677777777777 77765432 222677664 3556663 556777777764 46666665
Q ss_pred CCCcccccceeccCC
Q 020571 78 PTASRKLTYFMFTNC 92 (324)
Q Consensus 78 ~~~~~~~~~l~~~nC 92 (324)
.+. ..+..|++++|
T Consensus 280 ~l~-~sL~~L~Ls~N 293 (754)
T PRK15370 280 NLP-EELRYLSVYDN 293 (754)
T ss_pred ccC-CCCcEEECCCC
Confidence 432 23556666654
No 9
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00026 Score=69.22 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=21.0
Q ss_pred eecCC-CCCccchhhcCCCCCCEEEccCC-Cc-cCCccccc
Q 020571 2 NLVEN-KLESLPASIGCLSSLEFLHLTRN-NL-SLPELPVL 39 (324)
Q Consensus 2 ~L~~~-~l~~lP~~i~~l~~L~~L~L~~n-~~-~lP~~i~~ 39 (324)
++++| +|+.+|..+. ++|+.|++++| ++ .||+++..
T Consensus 78 ~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 78 TIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred EccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence 45555 5666665542 46777777766 44 56655443
No 10
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.33 E-value=7.9e-05 Score=79.65 Aligned_cols=68 Identities=28% Similarity=0.405 Sum_probs=60.6
Q ss_pred CeecCC-CCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCC
Q 020571 1 MNLVEN-KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~-~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~ 68 (324)
|||++| .+.++|++|+.|-+|++|+|++..+ .||.+|++|.+ |++.....+.++|... .+|++|.+..
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 589988 8899999999999999999999999 99999999998 9999989999988764 6778877654
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.32 E-value=0.00021 Score=77.24 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=37.1
Q ss_pred eecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 2 NLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 2 ~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
+|++|.+. .+|..++.+++|+.|+|++|.+ .+|..+..+++ |+|++|+....+|.. ..+|+.|++++|.-.
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 34444443 3455555555555555555555 44544444444 555555544455532 234555555555544
Q ss_pred CccC
Q 020571 73 SKHF 76 (324)
Q Consensus 73 ~~~~ 76 (324)
..+|
T Consensus 585 ~~~p 588 (968)
T PLN00113 585 GSLP 588 (968)
T ss_pred eeCC
Confidence 4444
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.27 E-value=0.0001 Score=52.30 Aligned_cols=48 Identities=38% Similarity=0.555 Sum_probs=34.7
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccc
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNC 48 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C 48 (324)
++|++|+|..+|. .+..+++|++|+|++|++ .+|+ .+..+++ |++++|
T Consensus 6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp EEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred EECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4678888888885 557788888888888888 7765 4566555 666554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.26 E-value=0.00029 Score=74.26 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=58.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccccc-CCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL-LSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFR 77 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~-L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~ 77 (324)
|+|++|+|+.+|..+. .+|+.|+|++|++ .||..+.. |..|+|+ |++|..+|. +|.+|+.|++++| .|+.+|.
T Consensus 225 L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls-~N~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 225 LYANSNQLTSIPATLP--DTIQEMELSINRITELPERLPSALQSLDLF-HNKISCLPENLPEELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred EECCCCccccCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECc-CCccCccccccCCCCcEEECCCC-ccccCcc
Confidence 5788899999998764 5799999999999 99987653 3338887 568888886 7789999999986 6777764
Q ss_pred C
Q 020571 78 P 78 (324)
Q Consensus 78 ~ 78 (324)
.
T Consensus 301 ~ 301 (754)
T PRK15370 301 H 301 (754)
T ss_pred c
Confidence 3
No 14
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.15 E-value=0.00042 Score=67.76 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=51.4
Q ss_pred hcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCCCCC
Q 020571 15 IGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFRPTA 80 (324)
Q Consensus 15 i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~~~~ 80 (324)
|..+..|+.|++++|++ .||.--.+|..|.+++|.+|.++|+ +|.+|+.|++.+|..|..+|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccc
Confidence 44578899999999988 8884223344488899999999995 788999999999988888876543
No 15
>PLN03150 hypothetical protein; Provisional
Probab=97.01 E-value=0.00089 Score=69.38 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=60.0
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~ 70 (324)
|+|++|+|. .+|..++.+++|+.|+|++|++ .+|..+++|++ |+|+++.....+|.. +.++..+++.++.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 578999887 8999999999999999999999 89999998887 999998777788853 2344566666655
Q ss_pred CCCcc
Q 020571 71 SLSKH 75 (324)
Q Consensus 71 sL~~~ 75 (324)
.|-..
T Consensus 527 ~lc~~ 531 (623)
T PLN03150 527 GLCGI 531 (623)
T ss_pred cccCC
Confidence 44433
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.93 E-value=0.00021 Score=74.96 Aligned_cols=42 Identities=40% Similarity=0.574 Sum_probs=26.5
Q ss_pred CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571 1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPELPVLLSH 42 (324)
Q Consensus 1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~i~~L~~ 42 (324)
|+|++|.|..+|++ +.+|..|+.|+||||.+ .||.++-.+..
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 45666666666653 34566666777777776 66666655544
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.75 E-value=0.00053 Score=66.21 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=54.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc--cccccccccCcCCCC----CCCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH--IEARNCKQLQSLPEL----PSCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~--L~l~~C~~L~~lP~l----p~sL~~L~~~~C~sL~ 73 (324)
|+|++|-|..+|.+++.+..|+.|+++.|.| .+|..+..+.. +.+..-..+++++.- ..+|..||+.+ ..|+
T Consensus 440 L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq 518 (565)
T KOG0472|consen 440 LDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQ 518 (565)
T ss_pred eecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-Cchh
Confidence 3566666667777777777777777777777 77766655554 334444556666542 36778888887 6788
Q ss_pred ccCCCCCc-ccccceec
Q 020571 74 KHFRPTAS-RKLTYFMF 89 (324)
Q Consensus 74 ~~~~~~~~-~~~~~l~~ 89 (324)
.+|...+. -++++|.+
T Consensus 519 ~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLEL 535 (565)
T ss_pred hCChhhccccceeEEEe
Confidence 88865443 23334444
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.74 E-value=0.00061 Score=45.38 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC
Q 020571 19 SSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL 57 (324)
Q Consensus 19 ~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l 57 (324)
++|++|+|++|++ .||..|++|++ |+++++ .+.+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4799999999999 99998988887 888875 46565544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.68 E-value=0.00035 Score=73.34 Aligned_cols=69 Identities=33% Similarity=0.501 Sum_probs=60.4
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcC--C-CCC-CCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSL--P-ELP-SCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~l--P-~lp-~sL~~L~~~~C~s 71 (324)
|+||+|.|+.||+.+..|.+|++|...+|.+ .+| .+.++.. +||+ |++|+.+ | .+| ++|++||+.|.+.
T Consensus 412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 5899999999999999999999999999999 999 5877776 8997 7888754 4 467 8999999999764
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.67 E-value=0.0014 Score=56.94 Aligned_cols=71 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred CeecCCCCCccchhhc-CCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIG-CLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~-~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~s 71 (324)
|+|.++.|..|. .++ .+.+|+.|+|++|.+ .|+ ++..|.+ |++++ +++.++.+ + .++|+.|++.+. .
T Consensus 24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N-~ 99 (175)
T PF14580_consen 24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNN-K 99 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS--
T ss_pred cccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCC-c
Confidence 578888888775 576 588999999999998 886 3666665 88886 77777753 2 368999988863 4
Q ss_pred CCcc
Q 020571 72 LSKH 75 (324)
Q Consensus 72 L~~~ 75 (324)
+..+
T Consensus 100 I~~l 103 (175)
T PF14580_consen 100 ISDL 103 (175)
T ss_dssp --SC
T ss_pred CCCh
Confidence 4433
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.65 E-value=0.00045 Score=70.00 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=53.0
Q ss_pred ecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC----CCCcEEecCCCCCC
Q 020571 3 LVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP----SCPEELDTSILESL 72 (324)
Q Consensus 3 L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp----~sL~~L~~~~C~sL 72 (324)
+..|+|+ .||.+|..|.-|.+|+||.|.+ +.|..+.+..+ |+|++ +++.+||.-. .-|-+|++++ ..|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chh
Confidence 3456664 6888888888888888888888 88887777666 77776 6777777521 3455677776 467
Q ss_pred CccCCCC
Q 020571 73 SKHFRPT 79 (324)
Q Consensus 73 ~~~~~~~ 79 (324)
+++|...
T Consensus 163 e~LPPQ~ 169 (1255)
T KOG0444|consen 163 EMLPPQI 169 (1255)
T ss_pred hhcCHHH
Confidence 7777544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.59 E-value=0.0007 Score=58.61 Aligned_cols=66 Identities=32% Similarity=0.431 Sum_probs=45.9
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~ 68 (324)
-||.|+|+.+|+.|..|.+|+.|++++|.+ .+|.+|+.|.+ |++. -++|.-+|.= -+-|+.||+..
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhccc
Confidence 367777888888888888888888888888 88888888877 6664 4566666632 23445555543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.34 E-value=0.00085 Score=58.10 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=28.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---ccccc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARN 47 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~ 47 (324)
||+++|.|+++|.+|+.++.|+.|+++-|.+ .+|.+++.++. |+|.+
T Consensus 61 ln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 61 LNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 3455556666666666666666666666666 66666666554 55544
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.23 E-value=0.0016 Score=66.21 Aligned_cols=79 Identities=27% Similarity=0.304 Sum_probs=53.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCC--c-cCCcccccCC-----------------------c---ccccccccc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNN--L-SLPELPVLLS-----------------------H---IEARNCKQL 51 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~--~-~lP~~i~~L~-----------------------~---L~l~~C~~L 51 (324)
||||.|.|+.+|+.++.|+.|+.|.+.+|. | .||++|+.|. + |.|+ |++|
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrL 351 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRL 351 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccce
Confidence 456666666666666666666666666663 3 6666665553 3 5564 6788
Q ss_pred CcCCC---CCCCCcEEecCCCCCCCccCCCCC
Q 020571 52 QSLPE---LPSCPEELDTSILESLSKHFRPTA 80 (324)
Q Consensus 52 ~~lP~---lp~sL~~L~~~~C~sL~~~~~~~~ 80 (324)
..||+ +.+.|+.|++.+...|..=|.+..
T Consensus 352 iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 352 ITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred eechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 88886 558899999999998887776644
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.17 E-value=0.00038 Score=67.17 Aligned_cols=56 Identities=32% Similarity=0.449 Sum_probs=35.7
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP 58 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp 58 (324)
++.++.++++|+..-.|++|+.||.-.|-+ .||+.++.+.+ |+|.. +++..+|++|
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~ 225 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPEFP 225 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCCCC
Confidence 445555566665555566666666666666 77777777766 66665 5666677655
No 26
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.0016 Score=36.71 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=17.6
Q ss_pred CCCEEEccCCCc-cCCcccccC
Q 020571 20 SLEFLHLTRNNL-SLPELPVLL 40 (324)
Q Consensus 20 ~L~~L~L~~n~~-~lP~~i~~L 40 (324)
+|++|+|++|++ .||++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 589999999999 999887764
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.91 E-value=0.0047 Score=43.58 Aligned_cols=50 Identities=30% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 19 SSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 19 ~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
++|+.|+|++|++ .||. .+..+++ |++++ .+++.+|.- .++|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 5789999999999 9995 5676766 88884 556666632 256677777665
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.50 E-value=0.0056 Score=59.37 Aligned_cols=75 Identities=29% Similarity=0.367 Sum_probs=46.2
Q ss_pred eecCCCCCccchhhcCCC-CCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCCC
Q 020571 2 NLVENKLESLPASIGCLS-SLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESLS 73 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~-~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL~ 73 (324)
++.++++.++|..++.+. +|+.|++++|.+ .+|..+..++. |++++ ..+..+|. .+.+|+.|++++ ..+.
T Consensus 122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~ 199 (394)
T COG4886 122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKIS 199 (394)
T ss_pred ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-Cccc
Confidence 455566667776666664 777777777777 77655666655 66665 44555554 456666666666 3455
Q ss_pred ccCCC
Q 020571 74 KHFRP 78 (324)
Q Consensus 74 ~~~~~ 78 (324)
.+|..
T Consensus 200 ~l~~~ 204 (394)
T COG4886 200 DLPPE 204 (394)
T ss_pred cCchh
Confidence 55543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.36 E-value=0.0042 Score=58.14 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~ 73 (324)
+|||+|.|+.+-+++.-++.++.|++|.|.+ .+-+ +..|++ |+|++ +.|.++-.+- .+++.|.+.+ ..++
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE 365 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIE 365 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHh
Confidence 4566666666666666666666666666666 5443 444444 66665 4444444332 4555555554 3444
Q ss_pred ccC
Q 020571 74 KHF 76 (324)
Q Consensus 74 ~~~ 76 (324)
+++
T Consensus 366 ~LS 368 (490)
T KOG1259|consen 366 TLS 368 (490)
T ss_pred hhh
Confidence 444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.17 E-value=0.0039 Score=62.72 Aligned_cols=71 Identities=32% Similarity=0.412 Sum_probs=41.7
Q ss_pred cCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc--cccccccccCcCCC---CCCCCcEEecCCCCCCCccC
Q 020571 4 VENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH--IEARNCKQLQSLPE---LPSCPEELDTSILESLSKHF 76 (324)
Q Consensus 4 ~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~--L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL~~~~ 76 (324)
..|.+..+|..|++|..|++|+|+.|.+ .+|..|..|.- |-+++ ++|.++|+ +...|..|+++.| .+.++|
T Consensus 106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhch
Confidence 3445556777777777777777777777 77766666665 44443 56666663 2344455555543 344443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.16 E-value=0.016 Score=50.39 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=7.6
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLP 34 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP 34 (324)
||++|.|+.++ .+..++.|+.|+|++|.+ .++
T Consensus 48 ~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 48 DLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp E-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred ECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 44444444443 344445555555555555 444
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.06 E-value=0.0096 Score=57.72 Aligned_cols=68 Identities=40% Similarity=0.571 Sum_probs=43.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C 69 (324)
|+++++.+..+|..++.++.|+.|+++.|++ .+|.....+.. |++++ .++..+|. .+..|+.|.+.+-
T Consensus 145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCC
Confidence 4566667777766677777777777777777 77765434433 66665 56666665 4555666666663
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.24 E-value=0.009 Score=60.17 Aligned_cols=53 Identities=38% Similarity=0.577 Sum_probs=33.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLP 55 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP 55 (324)
+||+-|.|..+|..++.|+ |+.|.+++|++ .+|..|+.+.. |+.+ |..++++|
T Consensus 126 l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s-~nei~slp 182 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS-KNEIQSLP 182 (722)
T ss_pred hhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh-hhhhhhch
Confidence 3556666666777776666 67777777777 77776764443 5555 34555555
No 34
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.039 Score=28.98 Aligned_cols=16 Identities=50% Similarity=0.742 Sum_probs=10.1
Q ss_pred CCCCEEEccCCCc-cCC
Q 020571 19 SSLEFLHLTRNNL-SLP 34 (324)
Q Consensus 19 ~~L~~L~L~~n~~-~lP 34 (324)
++|+.|+|++|.+ +||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 4788999999988 877
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.50 E-value=0.073 Score=57.38 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCccchh-hcCCCCCCEEEccCC-Cc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCccCC
Q 020571 8 LESLPAS-IGCLSSLEFLHLTRN-NL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSKHFR 77 (324)
Q Consensus 8 l~~lP~~-i~~l~~L~~L~L~~n-~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~~~~ 77 (324)
+..++.. +..++.|.+|||++| .+ .||++|+.|.+ |+|++ ..+..||.-. ..|.+|++.....|+.++.
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccc
Confidence 3444443 667999999999988 45 99999999988 88886 5566666432 4667888887776666643
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.27 E-value=0.03 Score=46.95 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=32.6
Q ss_pred eecCCCCCccchhhcCC-CCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC
Q 020571 2 NLVENKLESLPASIGCL-SSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL 57 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l-~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l 57 (324)
+|++|.+.++|..+... +-++.|+|.+|.+ .+|..+..++. |+++. +.+...|+.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~v 118 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRV 118 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHH
Confidence 46666666677666543 3667777777777 77765544443 66654 444445543
No 37
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.12 E-value=0.12 Score=29.92 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=17.6
Q ss_pred CCCCCEEEccCCCc-cCCccc
Q 020571 18 LSSLEFLHLTRNNL-SLPELP 37 (324)
Q Consensus 18 l~~L~~L~L~~n~~-~lP~~i 37 (324)
|++|+.|+|++|.+ .||..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 57899999999999 999754
No 38
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.12 E-value=0.12 Score=29.92 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=17.6
Q ss_pred CCCCCEEEccCCCc-cCCccc
Q 020571 18 LSSLEFLHLTRNNL-SLPELP 37 (324)
Q Consensus 18 l~~L~~L~L~~n~~-~lP~~i 37 (324)
|++|+.|+|++|.+ .||..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 57899999999999 999754
No 39
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.81 E-value=0.041 Score=55.84 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=24.4
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCc
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~ 35 (324)
|+||+|+|..| +++-....+|++|+|++|.+ ++|+
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 56777777644 33445567788888888888 8875
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.79 E-value=0.14 Score=50.29 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=33.0
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~ 68 (324)
+|.+++|..+...+..+++|+.|+|++|.+ .|.. +..|.. |++.+ +.+..+..+ ..+|+.+++.+
T Consensus 101 ~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 101 DLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred eccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc-CcchhccCCccchhhhcccCCc
Confidence 445555555554455566666666666665 5542 333332 55554 444444444 34455555544
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.37 E-value=0.08 Score=49.82 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=48.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCC---cccccCCccccccccccCcCCCCC--CCCcEEecCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLP---ELPVLLSHIEARNCKQLQSLPELP--SCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP---~~i~~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~ 68 (324)
|++|.|.|..+-. +..|++|..||||+|.+ .+- .-++++..|.|.+ +.++++-.|- -||..||+.+
T Consensus 312 L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 312 LILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred Eeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc
Confidence 5889999988875 99999999999999977 554 4455554477765 5556665553 4667777765
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.49 E-value=0.13 Score=49.95 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=42.6
Q ss_pred eecCCCCCccchh-hcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC
Q 020571 2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE 56 (324)
Q Consensus 2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~ 56 (324)
.|..|.|+.||+. ++.+++|+.||||.|+| .| |..++.|.+ |-+-+-.+++.||.
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 5677889999884 57799999999999999 54 777887776 55555577777773
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.12 E-value=0.042 Score=57.10 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=51.0
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCc
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSK 74 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~ 74 (324)
+.++|.|..+-+++.-++.|+.|||+.|+| ..- .|..|.+ |+|++ +.|+.+|.+. -.|..|.+.| ..|++
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~t 246 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTT 246 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHh
Confidence 345677777778888888888888888888 665 5666665 88876 6778888764 2467777766 34555
Q ss_pred cC
Q 020571 75 HF 76 (324)
Q Consensus 75 ~~ 76 (324)
+.
T Consensus 247 L~ 248 (1096)
T KOG1859|consen 247 LR 248 (1096)
T ss_pred hh
Confidence 44
No 44
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=89.06 E-value=0.2 Score=46.44 Aligned_cols=92 Identities=25% Similarity=0.211 Sum_probs=54.3
Q ss_pred CeecCCCCC-----ccchhhcCC-CCCCEEEccCCCc-c-----CCccccc---CCcccccccccc----CcCCC-CC--
Q 020571 1 MNLVENKLE-----SLPASIGCL-SSLEFLHLTRNNL-S-----LPELPVL---LSHIEARNCKQL----QSLPE-LP-- 58 (324)
Q Consensus 1 ~~L~~~~l~-----~lP~~i~~l-~~L~~L~L~~n~~-~-----lP~~i~~---L~~L~l~~C~~L----~~lP~-lp-- 58 (324)
|++++|.+. .+...+..+ ++|+.|+|++|++ . ++..+.. |..|+|++|.-- ..++. ++
T Consensus 113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence 467778775 355567777 8999999999986 2 2333443 333888876432 11221 11
Q ss_pred CCCcEEecCCCCCCCc-----cCCCC-CcccccceeccCCc
Q 020571 59 SCPEELDTSILESLSK-----HFRPT-ASRKLTYFMFTNCL 93 (324)
Q Consensus 59 ~sL~~L~~~~C~sL~~-----~~~~~-~~~~~~~l~~~nC~ 93 (324)
.+|+.|++++|. +.. +.... ....+..|++++|.
T Consensus 193 ~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 193 CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 589999999873 321 11111 12346677887763
No 45
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=88.02 E-value=0.33 Score=49.58 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCccc
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELP 37 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i 37 (324)
|||++|.|..+ +..+.++++|+.++|..|.+ .||...
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~ 121 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG 121 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhccccc
Confidence 57888888754 44577888888888888888 888744
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=87.56 E-value=0.4 Score=44.40 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=47.4
Q ss_pred CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-----CCcccccCCc---cccccccccC--------cCCCCC
Q 020571 1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQLQ--------SLPELP 58 (324)
Q Consensus 1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L~--------~lP~lp 58 (324)
|+|++|++. .++..+..+++|+.|+|++|.+ . ++..+.++++ |++++|.--. .++.-.
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 467888886 3566677778999999999976 3 2334444444 9999875221 122223
Q ss_pred CCCcEEecCCCC
Q 020571 59 SCPEELDTSILE 70 (324)
Q Consensus 59 ~sL~~L~~~~C~ 70 (324)
..|+.|++.+|.
T Consensus 250 ~~L~~L~l~~n~ 261 (319)
T cd00116 250 ISLLTLSLSCND 261 (319)
T ss_pred CCceEEEccCCC
Confidence 789999999983
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.79 E-value=0.54 Score=41.90 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=44.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccC----CccccccccccCcCCCCC-----CCCcEEecCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLL----SHIEARNCKQLQSLPELP-----SCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L----~~L~l~~C~~L~~lP~lp-----~sL~~L~~~~ 68 (324)
+||++|.|..++ .+..++.|.+|.|+.|.+ .|-..+..+ +.|.|.+ ++++.|-++- +.|++|.+.+
T Consensus 47 iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 47 IDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecC
Confidence 478888888887 488899999999999999 887665443 2277765 4455444331 3556655554
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=82.66 E-value=0.77 Score=45.09 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=49.8
Q ss_pred ecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCccC
Q 020571 3 LVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKHF 76 (324)
Q Consensus 3 L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~~ 76 (324)
+..+.|.++-..++.+.+|+.|++.+|.+ .+...+..+.+ |+|++ +++..+..+. ..|+.|++.++ .+..+.
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~ 156 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGN-LISDIS 156 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccC-cchhcc
Confidence 44555666555688899999999999999 77764555554 88876 5666665442 44888888873 444444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=82.54 E-value=0.24 Score=51.74 Aligned_cols=66 Identities=30% Similarity=0.381 Sum_probs=47.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-cccc--CCccccccccccCcCCCC--CCCCcEEecCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVL--LSHIEARNCKQLQSLPEL--PSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~--L~~L~l~~C~~L~~lP~l--p~sL~~L~~~~ 68 (324)
|||+.|++.++- .+..++.|+.|||+.|.+ .+|. +... |..|+|.+ +.|++|-++ ..+|+.||++.
T Consensus 192 LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 192 LNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred hccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhccchhH
Confidence 689999998887 799999999999999999 9986 1111 11266654 555555544 36677777664
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=81.94 E-value=0.15 Score=42.90 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=54.0
Q ss_pred CeecCCCCCccchhhcCCC---CCCEEEccCCCc-cCCcccccCCc----cccccccccCcCCCC---CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLS---SLEFLHLTRNNL-SLPELPVLLSH----IEARNCKQLQSLPEL---PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~---~L~~L~L~~n~~-~lP~~i~~L~~----L~l~~C~~L~~lP~l---p~sL~~L~~~~C 69 (324)
++|+.|.|..+++-+..++ .|...+|++|.| .+|..+..... |+|.+ +.+..+|+- .+.|+.|++..
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~- 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF- 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-
Confidence 4788888876666655554 556669999999 99987766642 99987 677888853 36788888876
Q ss_pred CCCCccCCC
Q 020571 70 ESLSKHFRP 78 (324)
Q Consensus 70 ~sL~~~~~~ 78 (324)
..|...|..
T Consensus 110 N~l~~~p~v 118 (177)
T KOG4579|consen 110 NPLNAEPRV 118 (177)
T ss_pred CccccchHH
Confidence 345555443
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=0.16 Score=47.79 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred chhhcCCCCCCEEEccCCC-c-c--CCcccccCCc---cccccccccCcCC-----CCCCCCcEEecCCCCCCCccCC-C
Q 020571 12 PASIGCLSSLEFLHLTRNN-L-S--LPELPVLLSH---IEARNCKQLQSLP-----ELPSCPEELDTSILESLSKHFR-P 78 (324)
Q Consensus 12 P~~i~~l~~L~~L~L~~n~-~-~--lP~~i~~L~~---L~l~~C~~L~~lP-----~lp~sL~~L~~~~C~sL~~~~~-~ 78 (324)
-..|..=..|+.|+|++++ | + +---+.+++. |+|+.|-.-+..- .+..+|..|+++||..--..+- .
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 3345556789999998874 2 1 1111222332 6666665444332 2446788888888753211110 0
Q ss_pred ---CCcccccceeccCCcccchh
Q 020571 79 ---TASRKLTYFMFTNCLKLNKS 98 (324)
Q Consensus 79 ---~~~~~~~~l~~~nC~~L~~~ 98 (324)
-..+++.+|+++.|..|...
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHHhCCceeeeccccccccCch
Confidence 01134567888888888653
No 52
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.30 E-value=1.3 Score=26.05 Aligned_cols=17 Identities=53% Similarity=0.757 Sum_probs=15.0
Q ss_pred CCCCEEEccCCCc-cCCc
Q 020571 19 SSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 19 ~~L~~L~L~~n~~-~lP~ 35 (324)
.+|+.|++++|.+ +||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 4689999999999 9997
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.57 E-value=2.4 Score=39.04 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=38.7
Q ss_pred hcCCCCCCEEEccCC--Cc--cCCcccccCCc---ccccccc--ccCcCCCCC--CCCcEEecCCCCCCC
Q 020571 15 IGCLSSLEFLHLTRN--NL--SLPELPVLLSH---IEARNCK--QLQSLPELP--SCPEELDTSILESLS 73 (324)
Q Consensus 15 i~~l~~L~~L~L~~n--~~--~lP~~i~~L~~---L~l~~C~--~L~~lP~lp--~sL~~L~~~~C~sL~ 73 (324)
+..|++|+.|.++.| .. .++-....+.+ |+|++.+ -+++++.++ .+|..|++.+|+...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 445789999999999 33 55544444444 6666532 255666555 678888999986544
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.42 E-value=2.7 Score=38.68 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=41.2
Q ss_pred CCCCEEEccCC---Cc-cCCcccccCCcccccccccc---CcCC---CCCCCCcEEecCCCCC--CCccCCCCCcccccc
Q 020571 19 SSLEFLHLTRN---NL-SLPELPVLLSHIEARNCKQL---QSLP---ELPSCPEELDTSILES--LSKHFRPTASRKLTY 86 (324)
Q Consensus 19 ~~L~~L~L~~n---~~-~lP~~i~~L~~L~l~~C~~L---~~lP---~lp~sL~~L~~~~C~s--L~~~~~~~~~~~~~~ 86 (324)
..|+.|.+.+. .+ .+|. +.+|+.|.++. +.. ..++ +..++|++|++++... +.++...-...++..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsd-n~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPK-LPKLKKLELSD-NYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCC-cchhhhhcccC-CcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34444444444 34 5554 44555577764 322 2222 2338899999887422 233332223344667
Q ss_pred eeccCCcccc
Q 020571 87 FMFTNCLKLN 96 (324)
Q Consensus 87 l~~~nC~~L~ 96 (324)
|.+.||.-..
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 8888988765
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=1.8 Score=42.78 Aligned_cols=12 Identities=50% Similarity=0.589 Sum_probs=5.7
Q ss_pred CCCCCEEEccCC
Q 020571 18 LSSLEFLHLTRN 29 (324)
Q Consensus 18 l~~L~~L~L~~n 29 (324)
+++|+.|+|.+|
T Consensus 221 fPsl~~L~L~~N 232 (505)
T KOG3207|consen 221 FPSLEVLYLEAN 232 (505)
T ss_pred CCcHHHhhhhcc
Confidence 444444444444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=64.33 E-value=4.1 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCCCCEEEccCCCc-cCCcccccCCc
Q 020571 17 CLSSLEFLHLTRNNL-SLPELPVLLSH 42 (324)
Q Consensus 17 ~l~~L~~L~L~~n~~-~lP~~i~~L~~ 42 (324)
++++|..||+|+.++ .| ++|++|.+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhcccc
Confidence 455555666666555 55 44555443
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.24 E-value=1.8 Score=40.53 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=31.2
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH 42 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~ 42 (324)
||..||.|..|- -+..++.|+.|.||-|++ +|-+ +.++++
T Consensus 24 LNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtr 64 (388)
T KOG2123|consen 24 LNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTR 64 (388)
T ss_pred hcccCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHH
Confidence 577888888765 356799999999999999 8865 555554
No 58
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.89 E-value=5.6 Score=23.28 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.9
Q ss_pred CCCCCEEEccCCCc-cCC
Q 020571 18 LSSLEFLHLTRNNL-SLP 34 (324)
Q Consensus 18 l~~L~~L~L~~n~~-~lP 34 (324)
+.+|+.|+|+.|.+ .|.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 46899999999987 654
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.80 E-value=5.3 Score=22.29 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=9.3
Q ss_pred CCCCCEEEccCCCc
Q 020571 18 LSSLEFLHLTRNNL 31 (324)
Q Consensus 18 l~~L~~L~L~~n~~ 31 (324)
+++|+.|+|++|.+
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 36789999999886
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=53.81 E-value=8.3 Score=40.77 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=38.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc--ccccCCc---cccccccccCcC---------CCCCCCCcEEe
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE--LPVLLSH---IEARNCKQLQSL---------PELPSCPEELD 65 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~--~i~~L~~---L~l~~C~~L~~l---------P~lp~sL~~L~ 65 (324)
||+|+++++.+ ..|++|++|+.|.+.+-.| .-.. .+-+|++ ||+|.-++...- ....+.|+.||
T Consensus 178 LDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 178 LDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred eecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 57777777777 6777778877777776665 4332 2333443 666643222111 12234777777
Q ss_pred cCC
Q 020571 66 TSI 68 (324)
Q Consensus 66 ~~~ 68 (324)
.++
T Consensus 257 cSg 259 (699)
T KOG3665|consen 257 CSG 259 (699)
T ss_pred cCC
Confidence 665
No 61
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.64 E-value=11 Score=22.18 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=11.1
Q ss_pred CCCCEEEccCCCc
Q 020571 19 SSLEFLHLTRNNL 31 (324)
Q Consensus 19 ~~L~~L~L~~n~~ 31 (324)
++|++|+|++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 5789999999986
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=49.82 E-value=9.6 Score=34.16 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.2
Q ss_pred CeecCCCCCccchhhcC-CCCCCEEEccCCCc-cCCcccccCCccccccccccCcCC
Q 020571 1 MNLVENKLESLPASIGC-LSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLP 55 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~-l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP 55 (324)
|.|.+|.|+.|-..+.. +++|..|.|.+|++ +|-. +. -|..|.+|+.|-
T Consensus 69 Lll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~-----pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 69 LLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LD-----PLASCPKLEYLT 119 (233)
T ss_pred EEecCCcceeeccchhhhccccceEEecCcchhhhhh-cc-----hhccCCccceee
Confidence 46788899998888876 56799999999997 6654 11 244566666554
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.89 E-value=9.4 Score=36.30 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=27.8
Q ss_pred CeecCCCCC---ccchhhcCCCCCCEEEccCCC----c-cCCcccccCCcc
Q 020571 1 MNLVENKLE---SLPASIGCLSSLEFLHLTRNN----L-SLPELPVLLSHI 43 (324)
Q Consensus 1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~n~----~-~lP~~i~~L~~L 43 (324)
+||.+|.|. +|-.-+.+|+.|++|+|+.|. + ++|.-.++|..|
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 467777776 344445678888899998885 4 555434555443
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=47.40 E-value=2 Score=39.31 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=26.4
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH 42 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~ 42 (324)
|+|+.+.+..+|.+.+.+..+..+++..|+. .+|-+.+.+.+
T Consensus 70 l~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 70 LDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred HhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 4556666666666666666666666666666 66666666554
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=43.08 E-value=4 Score=40.04 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=34.2
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccC-CCc-cCCc-ccccCCc
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTR-NNL-SLPE-LPVLLSH 42 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~-n~~-~lP~-~i~~L~~ 42 (324)
+||+.|+|++| |..+..|.+|..|-+-| |+| .||. .++.|+.
T Consensus 96 LdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 96 LDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred ecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 58999999986 66788899998887777 889 9997 4566665
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=3.3 Score=39.30 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=28.5
Q ss_pred CCCCEEEccCCCc---cCCcccccCCccccccccccCcCC------------CCC--CCCcEEecCCCCCCCc
Q 020571 19 SSLEFLHLTRNNL---SLPELPVLLSHIEARNCKQLQSLP------------ELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 19 ~~L~~L~L~~n~~---~lP~~i~~L~~L~l~~C~~L~~lP------------~lp--~sL~~L~~~~C~sL~~ 74 (324)
+.|++|||+..++ .+.-- |+.|.+|+.|- .+. .+|+.|+++.|+.+..
T Consensus 185 sRlq~lDLS~s~it~stl~~i--------Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI--------LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH--------HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence 4588888887765 23222 34455555442 111 5788888888876654
No 67
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=35.24 E-value=24 Score=35.13 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=26.6
Q ss_pred eecCC-CCC--ccchhhcCCCCCCEEEccCCCc-cCC--cccccCCc---ccccc
Q 020571 2 NLVEN-KLE--SLPASIGCLSSLEFLHLTRNNL-SLP--ELPVLLSH---IEARN 47 (324)
Q Consensus 2 ~L~~~-~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP--~~i~~L~~---L~l~~ 47 (324)
+|.+| .+. ..+.. -+..|+.|+|++|++ ..+ .-++.|+. |+++.
T Consensus 228 ~L~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 228 YLEANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred hhhcccccceecchhh--hhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 45566 332 33333 356788888888888 777 34455554 66654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=35.16 E-value=29 Score=27.20 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=11.8
Q ss_pred hcCCCCCCEEEccCCCc-cCCc
Q 020571 15 IGCLSSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 15 i~~l~~L~~L~L~~n~~-~lP~ 35 (324)
+..+.+|+.+.+.++ + .++.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~ 51 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGD 51 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-T
T ss_pred ccccccccccccccc-ccccce
Confidence 345568888888774 6 7665
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.10 E-value=54 Score=18.52 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=7.1
Q ss_pred ceeccCCcccch
Q 020571 86 YFMFTNCLKLNK 97 (324)
Q Consensus 86 ~l~~~nC~~L~~ 97 (324)
.|++++|.++..
T Consensus 6 ~L~l~~C~~itD 17 (26)
T smart00367 6 ELDLSGCTNITD 17 (26)
T ss_pred EeCCCCCCCcCH
Confidence 455666666654
No 70
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.38 E-value=51 Score=40.02 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.9
Q ss_pred eecCCCCCccchhh-cCCCCCCEEEccCCCc
Q 020571 2 NLVENKLESLPASI-GCLSSLEFLHLTRNNL 31 (324)
Q Consensus 2 ~L~~~~l~~lP~~i-~~l~~L~~L~L~~n~~ 31 (324)
||++|+|..||... ..|.+|+.|+|++|.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 78999999998855 5689999999999964
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.61 E-value=8.6 Score=37.95 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCCCEEEccCCC---c-cCCcccccCCc---cccccccccCc-----CCCCCCCCcEEecCCCCCCCccCCC-C--Cccc
Q 020571 19 SSLEFLHLTRNN---L-SLPELPVLLSH---IEARNCKQLQS-----LPELPSCPEELDTSILESLSKHFRP-T--ASRK 83 (324)
Q Consensus 19 ~~L~~L~L~~n~---~-~lP~~i~~L~~---L~l~~C~~L~~-----lP~lp~sL~~L~~~~C~sL~~~~~~-~--~~~~ 83 (324)
..|+.|.|.|+. . .+-..-.++++ |.+.+|+++.. +-...+.|++|+++.|.++..+.-. . .-++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 346667776663 1 22222233333 66677776542 2344566777777777766544311 0 1133
Q ss_pred ccceeccCCcccch
Q 020571 84 LTYFMFTNCLKLNK 97 (324)
Q Consensus 84 ~~~l~~~nC~~L~~ 97 (324)
+.+++++.|.....
T Consensus 218 L~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG 231 (483)
T ss_pred HHHhhhccCchhhc
Confidence 44566666655543
Done!