Query 020571
Match_columns 324
No_of_seqs 216 out of 1923
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.8 2.3E-08 7.9E-13 93.3 9.7 77 2-78 189-272 (328)
2 4fcg_A Uncharacterized protein 98.4 6.9E-07 2.4E-11 83.2 7.8 80 1-80 211-298 (328)
3 4b8c_D Glucose-repressible alc 98.2 1.4E-06 4.6E-11 90.1 7.4 91 1-93 229-327 (727)
4 1dce_A Protein (RAB geranylger 98.2 2E-06 6.9E-11 86.4 6.8 89 1-92 446-543 (567)
5 1xeu_A Internalin C; cellular 98.0 8.8E-06 3E-10 73.3 7.9 88 1-92 46-138 (263)
6 3rgz_A Protein brassinosteroid 98.0 4.9E-06 1.7E-10 86.1 6.5 95 1-95 637-740 (768)
7 2wfh_A SLIT homolog 2 protein 98.0 1.9E-05 6.5E-10 67.8 8.9 75 1-77 36-119 (193)
8 3e6j_A Variable lymphocyte rec 98.0 1.7E-05 5.9E-10 69.8 8.6 73 2-76 46-128 (229)
9 4ezg_A Putative uncharacterize 98.0 5.5E-06 1.9E-10 71.0 5.0 91 1-92 71-169 (197)
10 1jl5_A Outer protein YOPM; leu 98.0 1.6E-05 5.5E-10 77.4 8.8 46 1-47 136-182 (454)
11 2z81_A CD282 antigen, TOLL-lik 98.0 1.4E-05 4.8E-10 78.6 8.3 88 1-92 366-461 (549)
12 4b8c_D Glucose-repressible alc 98.0 6.9E-06 2.4E-10 84.8 6.3 69 1-70 252-327 (727)
13 2r9u_A Variable lymphocyte rec 98.0 2.2E-05 7.7E-10 66.3 8.3 87 1-91 17-114 (174)
14 2je0_A Acidic leucine-rich nuc 98.0 6.9E-06 2.4E-10 66.9 4.9 90 1-92 22-123 (149)
15 2ell_A Acidic leucine-rich nuc 98.0 6.4E-06 2.2E-10 68.5 4.8 90 1-92 29-130 (168)
16 2xwt_C Thyrotropin receptor; s 97.9 1.2E-05 4E-10 70.8 6.5 90 2-93 136-237 (239)
17 3g06_A SSPH2 (leucine-rich rep 97.9 1.3E-05 4.6E-10 81.3 7.7 73 1-77 45-118 (622)
18 3zyi_A Leucine-rich repeat-con 97.9 1.5E-05 5.2E-10 77.0 7.8 76 1-77 104-189 (452)
19 4eco_A Uncharacterized protein 97.9 2.3E-05 7.8E-10 79.4 9.2 93 1-95 493-600 (636)
20 3g06_A SSPH2 (leucine-rich rep 97.9 2E-05 6.7E-10 80.1 8.5 85 1-92 66-151 (622)
21 3zyj_A Leucine-rich repeat-con 97.9 1.8E-05 6.2E-10 76.2 7.7 75 1-76 93-177 (440)
22 3g39_A Variable lymphocyte rec 97.9 3.1E-05 1.1E-09 65.0 8.1 87 1-91 14-111 (170)
23 4ecn_A Leucine-rich repeat pro 97.9 2.6E-05 8.9E-10 82.2 9.2 93 1-95 733-840 (876)
24 2ell_A Acidic leucine-rich nuc 97.9 9.2E-06 3.1E-10 67.5 4.5 74 1-77 54-137 (168)
25 1p9a_G Platelet glycoprotein I 97.9 3.6E-05 1.2E-09 70.3 8.7 89 1-92 60-158 (290)
26 4g8a_A TOLL-like receptor 4; l 97.9 1.9E-05 6.5E-10 78.4 7.4 74 1-76 57-140 (635)
27 3cvr_A Invasion plasmid antige 97.9 2.6E-05 9.1E-10 78.4 8.3 84 1-92 85-170 (571)
28 1h6u_A Internalin H; cell adhe 97.9 2.1E-05 7E-10 72.4 6.9 87 1-91 46-138 (308)
29 2v9t_B SLIT homolog 2 protein 97.9 3.3E-05 1.1E-09 67.6 7.9 66 2-68 38-113 (220)
30 2xwt_C Thyrotropin receptor; s 97.9 1.4E-05 4.9E-10 70.2 5.6 76 1-77 36-122 (239)
31 4ezg_A Putative uncharacterize 97.9 2.2E-05 7.7E-10 67.1 6.6 93 1-95 49-149 (197)
32 1ogq_A PGIP-2, polygalacturona 97.9 1.2E-05 4E-10 74.2 5.1 92 1-92 81-184 (313)
33 2r9u_A Variable lymphocyte rec 97.8 2.7E-05 9.1E-10 65.8 6.9 68 1-69 38-115 (174)
34 3cvr_A Invasion plasmid antige 97.8 2.9E-05 9.8E-10 78.1 8.2 85 1-92 105-190 (571)
35 3rfs_A Internalin B, repeat mo 97.8 5.1E-05 1.8E-09 68.2 8.9 89 1-92 68-167 (272)
36 2o6r_A Variable lymphocyte rec 97.8 6.4E-05 2.2E-09 63.0 8.9 90 1-92 33-134 (177)
37 1w8a_A SLIT protein; signaling 97.8 4.5E-05 1.5E-09 65.2 7.8 89 1-91 34-135 (192)
38 3e6j_A Variable lymphocyte rec 97.8 6.6E-05 2.3E-09 65.9 8.6 89 1-91 69-168 (229)
39 1h6u_A Internalin H; cell adhe 97.8 3.4E-05 1.2E-09 70.9 6.9 88 1-92 68-161 (308)
40 1jl5_A Outer protein YOPM; leu 97.8 5.5E-05 1.9E-09 73.6 8.7 87 1-92 76-163 (454)
41 4glp_A Monocyte differentiatio 97.8 3.2E-05 1.1E-09 70.9 6.7 87 1-89 202-301 (310)
42 1h6t_A Internalin B; cell adhe 97.8 3E-05 1E-09 70.8 6.4 88 1-92 51-144 (291)
43 4g8a_A TOLL-like receptor 4; l 97.8 4.5E-05 1.5E-09 75.7 8.0 90 1-92 81-183 (635)
44 1m9s_A Internalin B; cell inva 97.8 4.8E-05 1.7E-09 76.9 8.1 66 1-69 48-119 (605)
45 2wfh_A SLIT homolog 2 protein 97.8 8.7E-05 3E-09 63.6 8.7 87 1-91 15-111 (193)
46 3g39_A Variable lymphocyte rec 97.7 4.7E-05 1.6E-09 63.8 6.8 68 1-69 35-112 (170)
47 1xeu_A Internalin C; cellular 97.7 4.6E-05 1.6E-09 68.6 7.0 89 1-92 68-160 (263)
48 2v70_A SLIT-2, SLIT homolog 2 97.7 0.00011 3.6E-09 64.3 8.9 68 1-69 37-115 (220)
49 2v9t_B SLIT homolog 2 protein 97.7 9.4E-05 3.2E-09 64.6 8.5 89 1-91 61-161 (220)
50 1ogq_A PGIP-2, polygalacturona 97.7 2.3E-05 7.8E-10 72.2 4.6 92 1-92 55-159 (313)
51 4fmz_A Internalin; leucine ric 97.7 5.4E-05 1.8E-09 70.0 7.2 90 2-95 50-145 (347)
52 4fmz_A Internalin; leucine ric 97.7 5.3E-05 1.8E-09 70.0 7.1 90 1-93 71-166 (347)
53 1a9n_A U2A', U2A'; complex (nu 97.7 1.6E-05 5.6E-10 66.7 3.2 88 1-92 24-123 (176)
54 3rfs_A Internalin B, repeat mo 97.7 0.00012 4.1E-09 65.8 9.1 88 1-92 46-143 (272)
55 2z81_A CD282 antigen, TOLL-lik 97.7 7.1E-05 2.4E-09 73.6 8.1 89 1-92 339-441 (549)
56 4eco_A Uncharacterized protein 97.7 1.6E-05 5.4E-10 80.6 3.5 73 5-77 192-293 (636)
57 3zyi_A Leucine-rich repeat-con 97.7 6.6E-05 2.2E-09 72.5 7.7 94 1-96 80-185 (452)
58 2o6s_A Variable lymphocyte rec 97.7 0.00013 4.5E-09 62.6 8.9 66 2-68 34-109 (208)
59 2je0_A Acidic leucine-rich nuc 97.7 1.6E-05 5.4E-10 64.7 2.8 73 1-76 47-129 (149)
60 2o6s_A Variable lymphocyte rec 97.7 0.00014 4.6E-09 62.5 8.8 33 2-34 58-92 (208)
61 1xku_A Decorin; proteoglycan, 97.7 5.6E-05 1.9E-09 69.6 6.7 90 1-92 57-155 (330)
62 1dce_A Protein (RAB geranylger 97.7 3.6E-05 1.2E-09 77.2 5.7 74 1-77 468-550 (567)
63 1h6t_A Internalin B; cell adhe 97.7 5.3E-05 1.8E-09 69.1 6.4 88 1-92 73-166 (291)
64 1ozn_A Reticulon 4 receptor; N 97.7 9.8E-05 3.4E-09 66.5 8.1 68 2-69 38-115 (285)
65 1p9a_G Platelet glycoprotein I 97.7 0.0001 3.5E-09 67.2 8.1 89 1-92 36-134 (290)
66 3m19_A Variable lymphocyte rec 97.7 0.00015 5.2E-09 64.2 9.0 90 1-92 40-141 (251)
67 3zyj_A Leucine-rich repeat-con 97.6 9.6E-05 3.3E-09 71.1 8.1 92 1-94 69-172 (440)
68 1m9s_A Internalin B; cell inva 97.6 6E-05 2E-09 76.3 6.8 66 1-69 70-141 (605)
69 3m19_A Variable lymphocyte rec 97.6 0.00016 5.6E-09 64.0 8.9 88 1-92 19-117 (251)
70 2v70_A SLIT-2, SLIT homolog 2 97.6 0.00011 3.7E-09 64.2 7.5 88 1-92 16-115 (220)
71 2ifg_A High affinity nerve gro 97.6 0.00011 3.6E-09 68.2 7.6 87 2-91 14-112 (347)
72 2z80_A TOLL-like receptor 2, v 97.6 4.5E-05 1.5E-09 71.0 5.1 91 1-92 81-184 (353)
73 2o6q_A Variable lymphocyte rec 97.6 0.00018 6.1E-09 64.5 8.8 64 2-68 22-94 (270)
74 4ecn_A Leucine-rich repeat pro 97.6 0.00011 3.8E-09 77.4 8.4 89 1-92 553-654 (876)
75 3vq2_A TLR4, TOLL-like recepto 97.6 0.00011 3.6E-09 73.3 7.9 46 2-47 62-113 (606)
76 2z7x_B TOLL-like receptor 1, v 97.6 6.3E-05 2.1E-09 73.6 6.1 91 1-92 329-431 (520)
77 2z80_A TOLL-like receptor 2, v 97.6 7.6E-05 2.6E-09 69.5 6.0 94 1-96 57-163 (353)
78 1w8a_A SLIT protein; signaling 97.6 0.00021 7.1E-09 60.9 8.2 87 1-91 13-111 (192)
79 2z7x_B TOLL-like receptor 1, v 97.5 7.4E-05 2.5E-09 73.1 5.9 68 1-69 26-100 (520)
80 1a9n_A U2A', U2A'; complex (nu 97.5 9.9E-05 3.4E-09 61.9 5.8 73 1-76 47-129 (176)
81 2z66_A Variable lymphocyte rec 97.5 7.1E-05 2.4E-09 68.1 5.2 91 1-92 57-160 (306)
82 2o6q_A Variable lymphocyte rec 97.5 0.00032 1.1E-08 62.8 9.1 90 1-92 42-143 (270)
83 2ft3_A Biglycan; proteoglycan, 97.5 0.00019 6.5E-09 66.2 7.7 90 1-92 59-157 (332)
84 3o6n_A APL1; leucine-rich repe 97.5 0.00011 3.6E-09 69.4 6.0 74 1-77 231-312 (390)
85 4ay9_X Follicle-stimulating ho 97.5 0.00011 3.7E-09 68.7 6.0 75 2-77 160-241 (350)
86 2z66_A Variable lymphocyte rec 97.5 0.00013 4.3E-09 66.4 6.1 47 2-48 132-185 (306)
87 2z62_A TOLL-like receptor 4, v 97.5 0.0002 6.9E-09 64.1 7.4 68 1-69 33-110 (276)
88 1ozn_A Reticulon 4 receptor; N 97.5 0.00033 1.1E-08 63.0 8.7 90 1-92 61-163 (285)
89 3oja_B Anopheles plasmodium-re 97.5 0.00024 8.3E-09 71.1 8.6 68 1-69 80-157 (597)
90 3rgz_A Protein brassinosteroid 97.5 0.00014 4.8E-09 75.1 7.0 93 1-93 423-525 (768)
91 2xot_A Amphoterin-induced prot 97.5 0.00017 5.8E-09 67.6 6.9 67 1-68 44-121 (361)
92 3bz5_A Internalin-J, INLJ; leu 97.5 0.00027 9.3E-09 68.7 8.5 64 1-69 47-116 (457)
93 2xot_A Amphoterin-induced prot 97.4 0.00019 6.6E-09 67.2 7.0 90 1-92 69-173 (361)
94 3vq2_A TLR4, TOLL-like recepto 97.4 0.00025 8.5E-09 70.6 8.1 68 1-69 37-114 (606)
95 3o6n_A APL1; leucine-rich repe 97.4 0.00034 1.2E-08 65.8 8.7 67 2-69 75-151 (390)
96 2z62_A TOLL-like receptor 4, v 97.4 0.00028 9.6E-09 63.2 7.6 84 5-92 16-110 (276)
97 2o6r_A Variable lymphocyte rec 97.4 0.00026 9E-09 59.1 6.9 68 1-69 57-134 (177)
98 2ft3_A Biglycan; proteoglycan, 97.4 0.00036 1.2E-08 64.3 8.2 75 1-77 198-281 (332)
99 2id5_A Lingo-1, leucine rich r 97.4 0.00028 9.4E-09 68.3 7.5 68 1-69 37-114 (477)
100 2z63_A TOLL-like receptor 4, v 97.4 0.00025 8.7E-09 69.7 7.3 30 2-31 34-64 (570)
101 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00032 1.1E-08 69.5 7.9 73 2-76 58-137 (562)
102 3bz5_A Internalin-J, INLJ; leu 97.4 0.0002 7E-09 69.6 6.2 91 1-95 217-320 (457)
103 3t6q_A CD180 antigen; protein- 97.4 0.00033 1.1E-08 69.7 7.8 69 1-69 38-115 (606)
104 1o6v_A Internalin A; bacterial 97.3 0.00029 1E-08 68.2 6.9 88 1-92 248-341 (466)
105 1ds9_A Outer arm dynein; leuci 97.3 2.6E-06 8.9E-11 73.1 -6.9 67 7-76 36-109 (198)
106 2ifg_A High affinity nerve gro 97.3 0.0003 1E-08 65.1 6.6 68 1-69 36-113 (347)
107 3t6q_A CD180 antigen; protein- 97.3 0.00042 1.4E-08 68.9 7.9 74 2-75 260-341 (606)
108 2id5_A Lingo-1, leucine rich r 97.3 0.00038 1.3E-08 67.3 7.3 69 1-69 61-138 (477)
109 3v47_A TOLL-like receptor 5B a 97.3 0.00046 1.6E-08 66.0 7.8 68 1-69 280-357 (455)
110 1ziw_A TOLL-like receptor 3; i 97.3 0.00048 1.6E-08 69.6 8.2 66 2-68 31-106 (680)
111 3o53_A Protein LRIM1, AGAP0063 97.3 0.00015 5.3E-09 66.5 4.2 87 1-92 39-130 (317)
112 3oja_A Leucine-rich immune mol 97.3 0.0002 6.7E-09 70.2 5.0 87 1-92 39-130 (487)
113 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00041 1.4E-08 68.7 7.3 91 1-92 358-460 (562)
114 1o6v_A Internalin A; bacterial 97.2 0.00043 1.5E-08 67.0 7.1 90 1-94 270-365 (466)
115 1xku_A Decorin; proteoglycan, 97.2 0.00071 2.4E-08 62.1 7.5 90 1-92 150-250 (330)
116 3j0a_A TOLL-like receptor 5; m 97.2 0.00043 1.5E-08 72.3 6.6 58 12-69 66-133 (844)
117 1wwl_A Monocyte differentiatio 97.2 0.00021 7.2E-09 65.5 3.7 69 1-70 100-184 (312)
118 3oja_B Anopheles plasmodium-re 97.2 0.0003 1E-08 70.5 5.1 89 1-92 259-355 (597)
119 1ziw_A TOLL-like receptor 3; i 97.2 0.00086 2.9E-08 67.7 8.4 67 2-69 55-131 (680)
120 3v47_A TOLL-like receptor 5B a 97.1 0.00061 2.1E-08 65.1 6.8 74 2-76 305-387 (455)
121 4ay9_X Follicle-stimulating ho 97.1 0.00045 1.5E-08 64.4 5.7 67 2-68 183-255 (350)
122 1ds9_A Outer arm dynein; leuci 97.1 1.6E-05 5.4E-10 68.2 -4.2 89 1-92 53-150 (198)
123 3o53_A Protein LRIM1, AGAP0063 97.1 0.00039 1.3E-08 63.8 4.9 91 1-94 149-249 (317)
124 2z63_A TOLL-like receptor 4, v 97.1 0.0004 1.4E-08 68.3 5.1 93 1-93 352-456 (570)
125 3oja_A Leucine-rich immune mol 97.0 0.00035 1.2E-08 68.5 4.1 89 1-92 63-154 (487)
126 2ast_B S-phase kinase-associat 97.0 4.1E-05 1.4E-09 70.4 -2.8 71 2-72 76-155 (336)
127 3j0a_A TOLL-like receptor 5; m 97.0 0.00099 3.4E-08 69.5 7.3 71 1-71 29-109 (844)
128 1wwl_A Monocyte differentiatio 97.0 0.00028 9.7E-09 64.6 2.8 72 1-73 126-214 (312)
129 4glp_A Monocyte differentiatio 96.9 0.00093 3.2E-08 61.0 5.5 68 1-69 229-304 (310)
130 2ast_B S-phase kinase-associat 96.7 0.00032 1.1E-08 64.3 1.0 96 1-96 123-236 (336)
131 3e4g_A ATP synthase subunit S, 95.8 0.0052 1.8E-07 52.2 3.3 87 10-97 52-154 (176)
132 2ca6_A RAN GTPase-activating p 95.4 0.0019 6.6E-08 60.6 -1.0 70 1-70 65-170 (386)
133 3rw6_A Nuclear RNA export fact 95.1 0.012 4.1E-07 53.3 3.4 54 16-70 167-231 (267)
134 2ca6_A RAN GTPase-activating p 95.0 0.0031 1E-07 59.2 -1.0 92 1-93 192-314 (386)
135 3e4g_A ATP synthase subunit S, 94.9 0.0041 1.4E-07 52.9 -0.2 71 1-73 66-153 (176)
136 3goz_A Leucine-rich repeat-con 94.8 0.016 5.4E-07 53.9 3.4 18 14-31 45-63 (362)
137 3sb4_A Hypothetical leucine ri 94.6 0.017 5.9E-07 52.9 3.2 18 18-35 225-243 (329)
138 2p1m_B Transport inhibitor res 93.8 0.004 1.4E-07 61.3 -3.2 69 2-70 111-195 (594)
139 2p1m_B Transport inhibitor res 93.6 0.0094 3.2E-07 58.7 -0.8 54 17-70 103-167 (594)
140 3goz_A Leucine-rich repeat-con 93.6 0.017 5.7E-07 53.8 0.8 68 1-69 114-206 (362)
141 3rw6_A Nuclear RNA export fact 93.2 0.032 1.1E-06 50.5 2.0 25 43-68 175-205 (267)
142 3ogk_B Coronatine-insensitive 92.6 0.082 2.8E-06 51.9 4.2 32 11-42 212-244 (592)
143 3sb4_A Hypothetical leucine ri 92.6 0.08 2.7E-06 48.4 3.8 33 2-35 232-266 (329)
144 1z7x_W Ribonuclease inhibitor; 91.6 0.037 1.2E-06 52.6 0.2 51 18-69 198-266 (461)
145 1z7x_W Ribonuclease inhibitor; 90.7 0.091 3.1E-06 49.8 2.0 70 1-70 33-124 (461)
146 3rfe_A Platelet glycoprotein I 90.5 0.2 6.8E-06 39.9 3.6 33 2-36 14-49 (130)
147 3un9_A NLR family member X1; l 88.0 0.078 2.7E-06 49.9 -0.7 31 1-31 131-167 (372)
148 3rfe_A Platelet glycoprotein I 88.0 0.3 1E-05 38.8 2.9 31 1-31 36-67 (130)
149 3un9_A NLR family member X1; l 86.8 0.22 7.5E-06 46.8 1.7 69 1-70 106-194 (372)
150 4h09_A Hypothetical leucine ri 86.4 0.8 2.7E-05 42.3 5.4 10 18-27 262-271 (379)
151 4fs7_A Uncharacterized protein 83.9 0.83 2.9E-05 42.6 4.2 72 16-96 294-369 (394)
152 4gt6_A Cell surface protein; l 82.2 1.3 4.6E-05 41.2 4.9 81 16-97 262-361 (394)
153 4fs7_A Uncharacterized protein 80.8 2 6.9E-05 39.9 5.6 9 88-96 338-346 (394)
154 3ogk_B Coronatine-insensitive 80.6 0.39 1.3E-05 47.0 0.5 68 2-70 442-524 (592)
155 1io0_A Tropomodulin; LRR prote 79.8 0.33 1.1E-05 40.6 -0.3 65 1-66 41-128 (185)
156 4fdw_A Leucine rich hypothetic 79.6 1.9 6.4E-05 40.7 5.0 23 14-36 175-198 (401)
157 4fdw_A Leucine rich hypothetic 73.4 4.1 0.00014 38.4 5.4 8 19-26 248-255 (401)
158 4h09_A Hypothetical leucine ri 69.6 9.2 0.00032 34.9 6.8 73 15-95 282-358 (379)
159 1io0_A Tropomodulin; LRR prote 61.6 2.3 8E-05 35.2 0.9 68 1-69 70-161 (185)
160 2ra8_A Uncharacterized protein 60.7 9.4 0.00032 35.4 5.0 39 10-48 163-203 (362)
161 3ukw_C Bimax1 peptide; arm rep 51.2 10 0.00034 21.0 2.0 16 302-317 11-26 (28)
162 4gt6_A Cell surface protein; l 49.0 16 0.00055 33.6 4.6 49 47-96 112-163 (394)
163 2ra8_A Uncharacterized protein 31.5 11 0.00038 34.9 0.3 48 1-48 257-317 (362)
164 2lz0_A Uncharacterized protein 27.5 23 0.00079 26.4 1.4 9 88-96 38-46 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.76 E-value=2.3e-08 Score=93.30 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=43.8
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCCc
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLSK 74 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~~ 74 (324)
+|++|.|+.+|..++.+++|+.|+|++|.+ .+|..+..+++ |+|++|..+..+|.. .++|+.|++.+|..+..
T Consensus 189 ~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp EEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 455555555665566666666666666666 66655555554 566665555555543 24556666666555555
Q ss_pred cCCC
Q 020571 75 HFRP 78 (324)
Q Consensus 75 ~~~~ 78 (324)
+|..
T Consensus 269 ~p~~ 272 (328)
T 4fcg_A 269 LPLD 272 (328)
T ss_dssp CCTT
T ss_pred cchh
Confidence 5543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.36 E-value=6.9e-07 Score=83.23 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=71.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
|+|++|.|..+|..++.+++|+.|+|++|++ .+|..+..+++ |+|++|..+..+|.. .++|+.|++++|..+
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 5789999999999999999999999999987 89998888887 999999999999964 378999999999999
Q ss_pred CccCCCCC
Q 020571 73 SKHFRPTA 80 (324)
Q Consensus 73 ~~~~~~~~ 80 (324)
+.+|..+.
T Consensus 291 ~~iP~~l~ 298 (328)
T 4fcg_A 291 SRLPSLIA 298 (328)
T ss_dssp CCCCGGGG
T ss_pred hhccHHHh
Confidence 99987654
No 3
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.23 E-value=1.4e-06 Score=90.13 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=74.6
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~ 73 (324)
|+|++|.|..||..++.+++|+.|+|++|.+ .||.+|.+|++ |+|++++ |..||... .+|+.|++.+| .|.
T Consensus 229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~ 306 (727)
T 4b8c_D 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVT 306 (727)
T ss_dssp EECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCC
T ss_pred EECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCC
Confidence 5788999999999999999999999999999 99999988887 9999854 66888643 68999999987 678
Q ss_pred ccCCCCCc-ccccceeccCCc
Q 020571 74 KHFRPTAS-RKLTYFMFTNCL 93 (324)
Q Consensus 74 ~~~~~~~~-~~~~~l~~~nC~ 93 (324)
.+|..+.. ..+..|+++++.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSC
T ss_pred ccChhhhcCCCccEEeCCCCc
Confidence 88876543 456677776653
No 4
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=2e-06 Score=86.41 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=71.4
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
|+|++|+|+.+|. ++.+++|+.|+|++|.+ .||..|++|++ |+|++ +.+..+|.+. ++|+.|+++++ .|..
T Consensus 446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N-~l~~ 522 (567)
T 1dce_A 446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNN-RLQQ 522 (567)
T ss_dssp EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSS-CCCS
T ss_pred EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCC-CCCC
Confidence 5799999999997 99999999999999999 99999999988 99998 4677788553 78999999986 5666
Q ss_pred c--CCCCC-cccccceeccCC
Q 020571 75 H--FRPTA-SRKLTYFMFTNC 92 (324)
Q Consensus 75 ~--~~~~~-~~~~~~l~~~nC 92 (324)
+ |..+. ...+..|+++++
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTS
T ss_pred CCCcHHHhcCCCCCEEEecCC
Confidence 6 44433 244556666553
No 5
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=8.8e-06 Score=73.32 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=62.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC-CCCcEEecCCCCCCCcc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP-SCPEELDTSILESLSKH 75 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp-~sL~~L~~~~C~sL~~~ 75 (324)
|+|++|.|..+| .++.+++|+.|+|++|.+ .+|. +.++++ |+|+++ ++..+|.++ .+|+.|++++| .+..+
T Consensus 46 L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~~~L~~L~L~~N-~l~~~ 121 (263)
T 1xeu_A 46 FNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNN-ELRDT 121 (263)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCCSSCCEEECCSS-CCSBS
T ss_pred EECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCccccCcccEEEccCC-ccCCC
Confidence 467888888888 688888888888888888 8887 777766 888874 566677655 68888888886 56665
Q ss_pred CCCCCcccccceeccCC
Q 020571 76 FRPTASRKLTYFMFTNC 92 (324)
Q Consensus 76 ~~~~~~~~~~~l~~~nC 92 (324)
+.-.....+..|+++++
T Consensus 122 ~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 122 DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp GGGTTCTTCCEEECTTS
T ss_pred hhhcCcccccEEECCCC
Confidence 43223344555666554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.02 E-value=4.9e-06 Score=86.12 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=68.6
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|||++|+|. .+|..++.+++|+.|+|++|.+ .+|..|++|+. |+|++++....+|+. .++|+.|+++++.-
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 478888886 7888889999999999999988 88888888877 888887777788854 36788888888765
Q ss_pred CCccCCCCCcccccceeccCCccc
Q 020571 72 LSKHFRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 72 L~~~~~~~~~~~~~~l~~~nC~~L 95 (324)
-..+|.......+....|.++..|
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEE
T ss_pred cccCCCchhhccCCHHHhcCCchh
Confidence 566765433332333344444433
No 7
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=1.9e-05 Score=67.78 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=46.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s 71 (324)
|+|++|+|..+|..+..+++|+.|+|++|.+ .+|. .+..|++ |+|+++ ++..+|. + .++|+.|+++++ .
T Consensus 36 L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~ 113 (193)
T 2wfh_A 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-D 113 (193)
T ss_dssp EECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-C
T ss_pred EECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-C
Confidence 3566667777777777777777777777777 6653 4555555 777663 4555553 2 256777777764 4
Q ss_pred CCccCC
Q 020571 72 LSKHFR 77 (324)
Q Consensus 72 L~~~~~ 77 (324)
+..++.
T Consensus 114 l~~~~~ 119 (193)
T 2wfh_A 114 ISVVPE 119 (193)
T ss_dssp CCBCCT
T ss_pred CCeeCh
Confidence 555554
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.99 E-value=1.7e-05 Score=69.76 Aligned_cols=73 Identities=27% Similarity=0.260 Sum_probs=31.7
Q ss_pred eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC----CCCCCcEEecCCCCC
Q 020571 2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILES 71 (324)
Q Consensus 2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~s 71 (324)
+|++|+|..+ |..++.+++|+.|+|++|.+ .+|.. +..+++ |+|+++ ++..+|. -.++|+.|+++++ .
T Consensus 46 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~ 123 (229)
T 3e6j_A 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-K 123 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-c
Confidence 4444444443 33344455555555555555 44432 233333 445442 3344432 1244455555442 3
Q ss_pred CCccC
Q 020571 72 LSKHF 76 (324)
Q Consensus 72 L~~~~ 76 (324)
|..+|
T Consensus 124 l~~lp 128 (229)
T 3e6j_A 124 LTELP 128 (229)
T ss_dssp CCSCC
T ss_pred ccccC
Confidence 44443
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.98 E-value=5.5e-06 Score=71.02 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=57.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL 72 (324)
|+|++|.+..++ .+..+++|++|+|++|.+ . .|..+..+++ |+|++|.--...|. -.++|+.|++++|..+
T Consensus 71 L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 71 LTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp EEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred EEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 467777776665 677788888888888887 3 6777777666 77777544332332 2357788888877656
Q ss_pred CccCCCCCcccccceeccCC
Q 020571 73 SKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~nC 92 (324)
..++.-....++..|++.+|
T Consensus 150 ~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 150 TDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCCGGGGGCSSCCEEECTTB
T ss_pred cccHhhcCCCCCCEEECCCC
Confidence 66653222344556666554
No 10
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.98 E-value=1.6e-05 Score=77.44 Aligned_cols=46 Identities=37% Similarity=0.599 Sum_probs=29.3
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCcccccc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARN 47 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~ 47 (324)
|+|++|.++.+| +++.+++|++|++++|.+ .+|..+.+|..|++++
T Consensus 136 L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~ 182 (454)
T 1jl5_A 136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 182 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred EECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcC
Confidence 356667777777 477777777777777777 7666555444444443
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.97 E-value=1.4e-05 Score=78.62 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=67.4
Q ss_pred CeecCCCCCccch---hhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPA---SIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~---~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL 72 (324)
|+|++|.|+.+|. .++.+++|+.|+|++|++ .+|..+..+++ |+|++|+ +..+|. +|++|+.|++++| .|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l 443 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NL 443 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CC
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Ch
Confidence 5788999988763 588999999999999999 99998877766 9999865 677764 4678999999887 56
Q ss_pred CccCCCCCcccccceeccCC
Q 020571 73 SKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~nC 92 (324)
..++. ....+..|++++|
T Consensus 444 ~~~~~--~l~~L~~L~Ls~N 461 (549)
T 2z81_A 444 DSFSL--FLPRLQELYISRN 461 (549)
T ss_dssp SCCCC--CCTTCCEEECCSS
T ss_pred hhhcc--cCChhcEEECCCC
Confidence 55542 2344566777666
No 12
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.96 E-value=6.9e-06 Score=84.83 Aligned_cols=69 Identities=29% Similarity=0.214 Sum_probs=61.4
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~ 70 (324)
|+|++|.|+.||..|+.|++|++|+|++|.| .||.+|++|++ |+|++| .+..||.- ..+|+.|++.++.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 6899999999999999999999999999999 99999999887 999986 67888863 2689999999864
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.96 E-value=2.2e-05 Score=66.26 Aligned_cols=87 Identities=24% Similarity=0.238 Sum_probs=67.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~s 71 (324)
++++++.|.++|..+. ++|+.|+|++|.+ .+ |..+.++++ |+|+++ +|..+|.- .++|+.|+++++ .
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-c
Confidence 4788899999999875 8999999999999 77 557777776 999984 78888852 378999999985 6
Q ss_pred CCccCCC-CC-cccccceeccC
Q 020571 72 LSKHFRP-TA-SRKLTYFMFTN 91 (324)
Q Consensus 72 L~~~~~~-~~-~~~~~~l~~~n 91 (324)
|..++.. +. ..++..|.+.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCS
T ss_pred cceeCHHHhccccCCCEEEeCC
Confidence 7777764 32 34556666654
No 14
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.96 E-value=6.9e-06 Score=66.91 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=68.3
Q ss_pred CeecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
+++++|.+. .+|..++.+++|+.|+|++|.+ .+ ..+.++++ |+|++|.--..+|.. .++|+.|++++|.
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~- 99 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK- 99 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-
Confidence 478899998 8999889999999999999999 88 66777776 999986644447754 4789999999974
Q ss_pred CCccC--CCC-CcccccceeccCC
Q 020571 72 LSKHF--RPT-ASRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~--~~~-~~~~~~~l~~~nC 92 (324)
+..++ ..+ ...++..|++++|
T Consensus 100 i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 100 IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCChHHHHHHhhCCCCCEEeCcCC
Confidence 66553 222 2244566777665
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.95 E-value=6.4e-06 Score=68.51 Aligned_cols=90 Identities=22% Similarity=0.185 Sum_probs=68.4
Q ss_pred CeecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.|. .+|..+..+++|+.|+|++|.+ .+ ..+..+++ |+|++|.--..+|.+ .++|+.|++++| .
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 106 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-K 106 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-S
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-c
Confidence 578899998 8999889999999999999999 88 66877776 999987644446654 478999999997 6
Q ss_pred CCccCC--CC-CcccccceeccCC
Q 020571 72 LSKHFR--PT-ASRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~~--~~-~~~~~~~l~~~nC 92 (324)
+..++. .+ ...++..|++.+|
T Consensus 107 l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 107 LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCcchhHHHHhcCCCCCEEEeeCC
Confidence 776652 22 2244556777665
No 16
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.94 E-value=1.2e-05 Score=70.81 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=38.3
Q ss_pred eecCC-CCCccchh-hcCCCCCC-EEEccCCCc-cCCcccccCCc---cccccccccCcCCCC----C-CCCcEEecCCC
Q 020571 2 NLVEN-KLESLPAS-IGCLSSLE-FLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL----P-SCPEELDTSIL 69 (324)
Q Consensus 2 ~L~~~-~l~~lP~~-i~~l~~L~-~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l----p-~sL~~L~~~~C 69 (324)
+|++| .|..+|.. +..+++|+ .|+|++|.+ .+|..+...++ |+|++++.+..+|.- . ++|+.|++++
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~- 214 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ- 214 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-
Confidence 34444 44444432 44455555 555555555 55543322222 555554444444321 1 3455555554
Q ss_pred CCCCccCCCCCcccccceeccCCc
Q 020571 70 ESLSKHFRPTASRKLTYFMFTNCL 93 (324)
Q Consensus 70 ~sL~~~~~~~~~~~~~~l~~~nC~ 93 (324)
..+..+|.. ....+..|.+.++.
T Consensus 215 N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred CccccCChh-HhccCceeeccCcc
Confidence 234444433 22233344444443
No 17
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.94 E-value=1.3e-05 Score=81.32 Aligned_cols=73 Identities=36% Similarity=0.443 Sum_probs=45.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFR 77 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~ 77 (324)
+++++++|+.+|..+. ++|+.|+|++|++ .||..+.+|..|+|++| ++.++|..+++|+.|++++| .+..++.
T Consensus 45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~l~~l~~ 118 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PLTHLPA 118 (622)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSC-CCSCCCCCCTTCCEEEECSC-CCCCCCC
T ss_pred EEecCCCcCccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCC-cCCcCCCCCCCCCEEECcCC-cCCCCCC
Confidence 3566677777776665 6677777777777 77765555544666664 35666666666666666654 3444443
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.94 E-value=1.5e-05 Score=76.98 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=42.7
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~ 70 (324)
|+|++|.|..++ ..+..+++|++|+|++|.+ .+|.. +..+++ |+|+++ .+..+|.- .++|+.|++.+|.
T Consensus 104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCC
Confidence 356666666554 4566667777777777766 66543 444444 666653 34444431 2455666666555
Q ss_pred CCCccCC
Q 020571 71 SLSKHFR 77 (324)
Q Consensus 71 sL~~~~~ 77 (324)
.++.++.
T Consensus 183 ~l~~i~~ 189 (452)
T 3zyi_A 183 KLEYISE 189 (452)
T ss_dssp TCCEECT
T ss_pred CccccCh
Confidence 5555543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.92 E-value=2.3e-05 Score=79.43 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=73.1
Q ss_pred CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCcccccCCc---cccc------cccccCcCCCC---CCCCcEEe
Q 020571 1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPELPVLLSH---IEAR------NCKQLQSLPEL---PSCPEELD 65 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~------~C~~L~~lP~l---p~sL~~L~ 65 (324)
|+|++|.|..+|..+. .+++|+.|+|++|.+ .+|..+.++++ |+|+ +++....+|.- .++|+.|+
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 4788899999999987 899999999999999 99999988887 8884 44556677753 37899999
Q ss_pred cCCCCCCCccCCCCCcccccceeccCCccc
Q 020571 66 TSILESLSKHFRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 66 ~~~C~sL~~~~~~~~~~~~~~l~~~nC~~L 95 (324)
+++|. +..+|..+. ..+..|++++|.-.
T Consensus 573 Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 573 IGSND-IRKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSSC-CCBCCSCCC-TTCCEEECCSCTTC
T ss_pred CCCCc-CCccCHhHh-CcCCEEECcCCCCc
Confidence 99974 588887654 56777888776433
No 20
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.92 E-value=2e-05 Score=80.08 Aligned_cols=85 Identities=29% Similarity=0.284 Sum_probs=59.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT 79 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~ 79 (324)
|+|++|+|+.||. .+++|++|+|++|++ .||..+.+|..|+|++ .++..+|..+++|+.|++.++ .|..+|...
T Consensus 66 L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~-N~l~~l~~~l~~L~~L~L~~N-~l~~lp~~l 140 (622)
T 3g06_A 66 LVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSGLCKLWIFGN-QLTSLPVLP 140 (622)
T ss_dssp EEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECS-CCCCCCCCCCTTCCEEECCSS-CCSCCCCCC
T ss_pred EEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcC-CcCCCCCCCCCCcCEEECCCC-CCCcCCCCC
Confidence 4678888888886 567888888888888 8887666666677776 356777777777888877775 466665533
Q ss_pred CcccccceeccCC
Q 020571 80 ASRKLTYFMFTNC 92 (324)
Q Consensus 80 ~~~~~~~l~~~nC 92 (324)
.++..|++++|
T Consensus 141 --~~L~~L~Ls~N 151 (622)
T 3g06_A 141 --PGLQELSVSDN 151 (622)
T ss_dssp --TTCCEEECCSS
T ss_pred --CCCCEEECcCC
Confidence 34455666554
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=76.18 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=38.4
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~ 70 (324)
|+|++|.|..++ ..+..+++|+.|+|++|++ .+|. .+..+++ |+|+++ .+..+|.. .++|+.|++.+|.
T Consensus 93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp EECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCC
Confidence 355666666554 3455666666666666666 6654 3444443 555543 23344321 1445555555544
Q ss_pred CCCccC
Q 020571 71 SLSKHF 76 (324)
Q Consensus 71 sL~~~~ 76 (324)
.+..++
T Consensus 172 ~l~~i~ 177 (440)
T 3zyj_A 172 RLSYIS 177 (440)
T ss_dssp TCCEEC
T ss_pred CcceeC
Confidence 444443
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.90 E-value=3.1e-05 Score=65.02 Aligned_cols=87 Identities=24% Similarity=0.255 Sum_probs=66.6
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~s 71 (324)
++++++.|+++|..+. ++|+.|+|++|.+ .+ |..+.++++ |+|+++ ++..+|.- .++|+.|+++++ .
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~ 89 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-Q 89 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-c
Confidence 4788999999998774 8999999999999 87 556777776 999984 67788752 478999999985 6
Q ss_pred CCccCCC-CC-cccccceeccC
Q 020571 72 LSKHFRP-TA-SRKLTYFMFTN 91 (324)
Q Consensus 72 L~~~~~~-~~-~~~~~~l~~~n 91 (324)
|..++.. +. ...+..|++.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS
T ss_pred cCEeCHHHhcCCCCCCEEEeCC
Confidence 8887764 32 24555666644
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=2.6e-05 Score=82.19 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=73.0
Q ss_pred CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCcccccCCc---ccccc------ccccCcCCCC---CCCCcEEe
Q 020571 1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPELPVLLSH---IEARN------CKQLQSLPEL---PSCPEELD 65 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~------C~~L~~lP~l---p~sL~~L~ 65 (324)
|+|++|+|..+|..+. .+++|+.|+|++|.+ .||.++..+++ |+|++ |.....+|.. .++|+.|+
T Consensus 733 L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp EECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred EECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 4788888889999887 899999999999999 99988888877 87765 5556677743 37889999
Q ss_pred cCCCCCCCccCCCCCcccccceeccCCccc
Q 020571 66 TSILESLSKHFRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 66 ~~~C~sL~~~~~~~~~~~~~~l~~~nC~~L 95 (324)
+++|. +..+|..+. ..+..|++++|.-.
T Consensus 813 Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 813 IGSND-IRKVDEKLT-PQLYILDIADNPNI 840 (876)
T ss_dssp CCSSC-CCBCCSCCC-SSSCEEECCSCTTC
T ss_pred CCCCC-CCccCHhhc-CCCCEEECCCCCCC
Confidence 99974 588887654 46778888887643
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.88 E-value=9.2e-06 Score=67.53 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=58.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCCC---C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C~ 70 (324)
|+|++|.|..+ ..++.+++|++|+|++|.+ . +|..+..+++ |+|++| .+..+|. + .++|+.|++++|
T Consensus 54 L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N- 130 (168)
T 2ell_A 54 LSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC- 130 (168)
T ss_dssp EEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-
T ss_pred EeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-
Confidence 57899999988 7899999999999999999 7 8877766766 999986 6777663 2 368999999986
Q ss_pred CCCccCC
Q 020571 71 SLSKHFR 77 (324)
Q Consensus 71 sL~~~~~ 77 (324)
.+..++.
T Consensus 131 ~l~~~~~ 137 (168)
T 2ell_A 131 EVTNLND 137 (168)
T ss_dssp GGGTSTT
T ss_pred cCcchHH
Confidence 4555543
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.87 E-value=3.6e-05 Score=70.28 Aligned_cols=89 Identities=30% Similarity=0.296 Sum_probs=51.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL 72 (324)
|+|++|.|+.+|.. +.+++|+.|+|++|.+ .+|..+..+++ |+|+++ ++..+|. + .++|+.|+++++ .|
T Consensus 60 L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l 136 (290)
T 1p9a_G 60 LNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-EL 136 (290)
T ss_dssp EECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CC
Confidence 35666777666654 6677777777777777 77766655554 666653 4555542 1 256677777664 45
Q ss_pred CccCCCC--CcccccceeccCC
Q 020571 73 SKHFRPT--ASRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~~--~~~~~~~l~~~nC 92 (324)
..++... ...++..|++.++
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS
T ss_pred CccChhhcccccCCCEEECCCC
Confidence 5554432 1234445555443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.87 E-value=1.9e-05 Score=78.37 Aligned_cols=74 Identities=24% Similarity=0.219 Sum_probs=50.4
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~ 70 (324)
|||++|+|+.+|. ++..+++|++|+|++|.+ .||. .|.+|++ |+|+++ +|+.+|. -..+|+.|++.+|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N- 134 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET- 134 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-
Confidence 4778888887764 577888888888888888 7765 4666665 777775 4666663 1356777777765
Q ss_pred CCCccC
Q 020571 71 SLSKHF 76 (324)
Q Consensus 71 sL~~~~ 76 (324)
.|+.++
T Consensus 135 ~l~~l~ 140 (635)
T 4g8a_A 135 NLASLE 140 (635)
T ss_dssp CCCCST
T ss_pred cCCCCC
Confidence 455554
No 27
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.86 E-value=2.6e-05 Score=78.36 Aligned_cols=84 Identities=33% Similarity=0.440 Sum_probs=50.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRP 78 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~ 78 (324)
|+|++|+|+.+| +.+++|+.|+|++|++ .||. +. +|..|+|+++ ++..+|..+++|+.|+++++ .|..+|.
T Consensus 85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~l~~lp~- 157 (571)
T 3cvr_A 85 LEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN-QLTMLPELPALLEYINADNN-QLTMLPE- 157 (571)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC-
T ss_pred EECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC-cCCCCCCcCccccEEeCCCC-ccCcCCC-
Confidence 467777777777 4467777777777777 7776 54 3333666653 45556665566666666664 3555554
Q ss_pred CCcccccceeccCC
Q 020571 79 TASRKLTYFMFTNC 92 (324)
Q Consensus 79 ~~~~~~~~l~~~nC 92 (324)
....+..|++++|
T Consensus 158 -~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 158 -LPTSLEVLSVRNN 170 (571)
T ss_dssp -CCTTCCEEECCSS
T ss_pred -cCCCcCEEECCCC
Confidence 2233444555444
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.86 E-value=2.1e-05 Score=72.42 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=51.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
|++++|.+..+| .+..+++|+.|+|++|.+ .+|. +..+++ |+|++|+ +..+|.+. ++|+.|++++| .+..
T Consensus 46 L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~ 121 (308)
T 1h6u_A 46 LSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST-QITD 121 (308)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS-CCCC
T ss_pred EEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC-CCCC
Confidence 356677777776 577777777777777777 7776 666655 7777653 55555432 56677777665 3444
Q ss_pred cCCCCCcccccceeccC
Q 020571 75 HFRPTASRKLTYFMFTN 91 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~n 91 (324)
++.-....++..|++.+
T Consensus 122 ~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 122 VTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp CGGGTTCTTCCEEECCS
T ss_pred chhhcCCCCCCEEECCC
Confidence 44222223334444443
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.86 E-value=3.3e-05 Score=67.58 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=28.6
Q ss_pred eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571 2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~ 68 (324)
+|++|+|..+|. .+..+++|+.|+|++|.+ .+ |..+..+++ |+|++ .++..+|.- .++|+.|++++
T Consensus 38 ~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCC
Confidence 344444444433 344444555555555554 33 334444443 44444 233444421 13444555444
No 30
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.86 E-value=1.4e-05 Score=70.24 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=54.4
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCC-c-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNN-L-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~-~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
|+|++|+|+.+|. .++.+++|+.|+|++|+ + .+|. .+..+++ |+|++|.+++.+|.- .++|+.|++.++
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 4677888887776 57778888888888886 7 7775 5666655 888877778777742 367888888775
Q ss_pred CCCCccCC
Q 020571 70 ESLSKHFR 77 (324)
Q Consensus 70 ~sL~~~~~ 77 (324)
.+..+|.
T Consensus 116 -~l~~lp~ 122 (239)
T 2xwt_C 116 -GLKMFPD 122 (239)
T ss_dssp -CCCSCCC
T ss_pred -CCccccc
Confidence 4555654
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.85 E-value=2.2e-05 Score=67.15 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=66.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCC-CC--CCCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLP-EL--PSCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP-~l--p~sL~~L~~~~C~sL~ 73 (324)
++|++|.|..+| .+..+++|+.|+|++|.+ .+| .+..+++ |++++|+--...| .+ .++|+.|++++|.--.
T Consensus 49 L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 49 ITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred EeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 478899999999 799999999999999988 665 5777776 9999865433233 23 2689999999874322
Q ss_pred ccCCCC-CcccccceeccCCccc
Q 020571 74 KHFRPT-ASRKLTYFMFTNCLKL 95 (324)
Q Consensus 74 ~~~~~~-~~~~~~~l~~~nC~~L 95 (324)
..+..+ ....+..|++++|..+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBC
T ss_pred HhHHHHhhCCCCCEEEccCCCCc
Confidence 223222 2345667888887644
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.85 E-value=1.2e-05 Score=74.16 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=61.6
Q ss_pred CeecC-CCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571 1 MNLVE-NKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~-~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~ 70 (324)
|+|++ +++. .+|..++.+++|++|+|++|.+ .+|..+.++++ |+|+++.--..+|.. .++|+.|++.++.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 45664 6665 6888888888888888888888 77877877776 888876655466642 3678888888764
Q ss_pred CCCccCCCCCc-c-cccceeccCC
Q 020571 71 SLSKHFRPTAS-R-KLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~~~~-~-~~~~l~~~nC 92 (324)
--..+|..+.. . .+..|+++++
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSS
T ss_pred ccCcCCHHHhhhhhcCcEEECcCC
Confidence 32255544332 2 4456666554
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.85 E-value=2.7e-05 Score=65.79 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=55.4
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
|+|++|.|..+ |..++.+++|+.|+|++|.+ .+|..+ .++++ |+|++ +++..+|.- .++|+.|++.++
T Consensus 38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence 57899999987 56789999999999999999 999764 66666 99987 567777752 367888888774
No 34
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.85 E-value=2.9e-05 Score=78.11 Aligned_cols=85 Identities=35% Similarity=0.487 Sum_probs=60.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT 79 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~ 79 (324)
|+|++|+|+.+|. ++. +|+.|+|++|++ .||..+.+|..|+|+++ ++..+|..+++|+.|++++| .|..+|. +
T Consensus 105 L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~L~~lp~-l 178 (571)
T 3cvr_A 105 LDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNN-QLTMLPELPTSLEVLSVRNN-QLTFLPE-L 178 (571)
T ss_dssp EECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC-C
T ss_pred EEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCC-ccCcCCCcCCCcCEEECCCC-CCCCcch-h
Confidence 4678888888887 654 788888888888 88873344444888764 56678877788888888876 4666766 4
Q ss_pred CcccccceeccCC
Q 020571 80 ASRKLTYFMFTNC 92 (324)
Q Consensus 80 ~~~~~~~l~~~nC 92 (324)
. ..+..|+++++
T Consensus 179 ~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 179 P-ESLEALDVSTN 190 (571)
T ss_dssp C-TTCCEEECCSS
T ss_pred h-CCCCEEECcCC
Confidence 3 45666777665
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.83 E-value=5.1e-05 Score=68.23 Aligned_cols=89 Identities=27% Similarity=0.280 Sum_probs=57.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s 71 (324)
|+|++|.+..++ .++.+++|++|+|++|.+ .+|.. +.++++ |+|++|+ +..+|. + .++|+.|++.+| .
T Consensus 68 L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~ 144 (272)
T 3rfs_A 68 LALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-Q 144 (272)
T ss_dssp EECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-c
Confidence 467777777765 677888888888888888 66654 455555 7777753 455543 2 367788888776 5
Q ss_pred CCccCCCC--CcccccceeccCC
Q 020571 72 LSKHFRPT--ASRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~~~~--~~~~~~~l~~~nC 92 (324)
+..++... ....+..|++++|
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCHHHhccCccCCEEECCCC
Confidence 65555432 2344556666665
No 36
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.83 E-value=6.4e-05 Score=62.95 Aligned_cols=90 Identities=28% Similarity=0.306 Sum_probs=56.3
Q ss_pred CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~ 70 (324)
++|++|+|..+|.. ++.+++|+.|+|++|.+ .+|.. +..+++ |+|+++ ++..+|. + .++|+.|+++++
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N- 110 (177)
T 2o6r_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN- 110 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-
Confidence 35677777776654 46777888888888887 77654 455555 777764 4556654 2 267788888775
Q ss_pred CCCccCCCC-C-cccccceeccCC
Q 020571 71 SLSKHFRPT-A-SRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~~-~-~~~~~~l~~~nC 92 (324)
.+..++... . ...+..|.+.++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 111 QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cceEeCHHHhcCCcccCEEEecCC
Confidence 566666532 2 234555666543
No 37
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.81 E-value=4.5e-05 Score=65.17 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=51.0
Q ss_pred CeecCCCCCccchh--hcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPAS--IGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~--i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C 69 (324)
|+|++|+|..+|.. ++.+++|+.|+|++|.+ .+ |..+..+++ |+|+++ ++..++. + .++|+.|+++++
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence 35666666666653 66777777777777777 55 556666655 777763 3444442 2 266777777774
Q ss_pred CCCCcc-CCCCC-cccccceeccC
Q 020571 70 ESLSKH-FRPTA-SRKLTYFMFTN 91 (324)
Q Consensus 70 ~sL~~~-~~~~~-~~~~~~l~~~n 91 (324)
.+..+ +..+. ...+..|++.+
T Consensus 113 -~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 113 -QISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CCCEECTTSSTTCTTCCEEECTT
T ss_pred -cCCeeCHHHhhcCCCCCEEEeCC
Confidence 44444 32222 23344555543
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.78 E-value=6.6e-05 Score=65.94 Aligned_cols=89 Identities=25% Similarity=0.216 Sum_probs=67.3
Q ss_pred CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.|..+|.. +..+++|+.|+|++|.+ .+|.. +..+++ |+|++ .++..+|.- .++|+.|+++++ .
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~ 146 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-Q 146 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-C
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-c
Confidence 57899999999866 48899999999999999 88865 466666 99987 567788753 378999999985 6
Q ss_pred CCccCCC-CC-cccccceeccC
Q 020571 72 LSKHFRP-TA-SRKLTYFMFTN 91 (324)
Q Consensus 72 L~~~~~~-~~-~~~~~~l~~~n 91 (324)
|..++.. +. ...+..|.+.+
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTT
T ss_pred CCccCHHHHhCCCCCCEEEeeC
Confidence 7777653 22 23455566643
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.78 E-value=3.4e-05 Score=70.92 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=62.2
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
|+|++|.|..+|. ++.+++|+.|+|++|.+ .+| .+..+++ |+|++|. +..+|.+. ++|+.|++++| .+..
T Consensus 68 L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~ 143 (308)
T 1h6u_A 68 LELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLN-QITN 143 (308)
T ss_dssp EECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSS-CCCC
T ss_pred EEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCc
Confidence 4788888988887 88999999999999999 887 4766666 8888754 56666443 67888888876 4555
Q ss_pred cCCCCCcccccceeccCC
Q 020571 75 HFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC 92 (324)
++.-....++..|++++|
T Consensus 144 ~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 144 ISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CGGGGGCTTCCEEECCSS
T ss_pred CccccCCCCccEEEccCC
Confidence 543222234556666555
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.78 E-value=5.5e-05 Score=73.63 Aligned_cols=87 Identities=33% Similarity=0.326 Sum_probs=61.2
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT 79 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~ 79 (324)
+++++|+|+.+|.. .++|+.|+|++|.+ .+|..+.+|..|+++++ .+..+|.+|++|+.|++.+| .++.+|.-.
T Consensus 76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n-~l~~lp~~~ 150 (454)
T 1jl5_A 76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNN-NLKALSDLPPLLEYLGVSNN-QLEKLPELQ 150 (454)
T ss_dssp EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCSCCTTCCEEECCSS-CCSSCCCCT
T ss_pred EEecCCccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCC-ccCcccCCCCCCCEEECcCC-CCCCCcccC
Confidence 46778888888762 46888888888888 88887767766888774 67778888888888888876 566666322
Q ss_pred CcccccceeccCC
Q 020571 80 ASRKLTYFMFTNC 92 (324)
Q Consensus 80 ~~~~~~~l~~~nC 92 (324)
....+..|+++++
T Consensus 151 ~l~~L~~L~l~~N 163 (454)
T 1jl5_A 151 NSSFLKIIDVDNN 163 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 2234445555544
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.77 E-value=3.2e-05 Score=70.87 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred CeecCCCCCccchh----hcCCCCCCEEEccCCCc-cC-CcccccCC---c---cccccccccCcCCC-CCCCCcEEecC
Q 020571 1 MNLVENKLESLPAS----IGCLSSLEFLHLTRNNL-SL-PELPVLLS---H---IEARNCKQLQSLPE-LPSCPEELDTS 67 (324)
Q Consensus 1 ~~L~~~~l~~lP~~----i~~l~~L~~L~L~~n~~-~l-P~~i~~L~---~---L~l~~C~~L~~lP~-lp~sL~~L~~~ 67 (324)
|+|++|+|+.+|.. ++.+++|+.|+|++|.+ .+ |..+..+. + |+|++| ++..+|. ++++|+.|+++
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls 280 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLS 280 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECC
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECC
Confidence 45666666655542 35667777777777777 44 66665542 2 677653 4556664 45677777777
Q ss_pred CCCCCCccCCCCCcccccceec
Q 020571 68 ILESLSKHFRPTASRKLTYFMF 89 (324)
Q Consensus 68 ~C~sL~~~~~~~~~~~~~~l~~ 89 (324)
++ .|..+|.......+..|++
T Consensus 281 ~N-~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 281 SN-RLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp SC-CCCSCCCTTSCCCCSCEEC
T ss_pred CC-cCCCCchhhhCCCccEEEC
Confidence 64 4555544322233444444
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.77 E-value=3e-05 Score=70.80 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
+++++|.+..+| .++.+++|+.|+|++|.+ .+|. +.++++ |+|+++ .+..+|.+. ++|+.|++++| .+..
T Consensus 51 L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~i~~ 126 (291)
T 1h6t_A 51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN-GISD 126 (291)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS-CCCC
T ss_pred EEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC-cCCC
Confidence 356777777776 477788888888888888 7776 666665 777764 455566543 67777777775 4444
Q ss_pred cCCCCCcccccceeccCC
Q 020571 75 HFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC 92 (324)
++.-.....+..|++++|
T Consensus 127 ~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 127 INGLVHLPQLESLYLGNN 144 (291)
T ss_dssp CGGGGGCTTCCEEECCSS
T ss_pred ChhhcCCCCCCEEEccCC
Confidence 432222234445555544
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.76 E-value=4.5e-05 Score=75.66 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=66.2
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCCC----CCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPELP----SCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~lp----~sL~~L~~~~C~ 70 (324)
|||++|+|..+|+ .++.+++|++|+|++|++ .+|. .+.+|++ |+|++| ++..+|..+ ++|+.|+++++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N- 158 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN- 158 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC-
Confidence 5899999999976 478999999999999999 9986 4677776 999985 677787532 78999999886
Q ss_pred CCCccCC--CCC-cccccceeccCC
Q 020571 71 SLSKHFR--PTA-SRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~--~~~-~~~~~~l~~~nC 92 (324)
.+..++. .+. ...+..|.+.++
T Consensus 159 ~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 159 LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccccCCCchhhccchhhhhhcccCc
Confidence 4544332 221 234555666554
No 44
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.75 E-value=4.8e-05 Score=76.93 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=41.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C 69 (324)
|+|++|.|..+| .++.+++|+.|+|++|.+ .+|. +..|++ |+|++| .+..+|.+. ++|+.|++++|
T Consensus 48 L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTS
T ss_pred EECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCC
Confidence 456667776666 477777777777777777 6665 555554 666654 445555443 45666666554
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.75 E-value=8.7e-05 Score=63.58 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=65.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL 72 (324)
+++++++|+++|..+. ++|+.|+|++|.+ .+|..+.++++ |+|++ ..+..++. + ..+|+.|+++++ .|
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 3678889999998764 6899999999999 99998988887 99998 45667764 2 378999999985 57
Q ss_pred CccCCC-CC-cccccceeccC
Q 020571 73 SKHFRP-TA-SRKLTYFMFTN 91 (324)
Q Consensus 73 ~~~~~~-~~-~~~~~~l~~~n 91 (324)
..++.. +. ...+..|++.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCC
Confidence 777643 22 23444555543
No 46
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.75 E-value=4.7e-05 Score=63.84 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=54.8
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C 69 (324)
|+|++|.|..+ |..++.+++|++|+|++|.+ .+|.. +..+++ |+|++ +++..+|. + .++|+.|++.+.
T Consensus 35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 57899999988 56789999999999999999 99875 467766 99998 46777775 2 367888888774
No 47
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=4.6e-05 Score=68.56 Aligned_cols=89 Identities=25% Similarity=0.244 Sum_probs=65.3
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCCCC--CCCcEEecCCCCCCCccC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPELP--SCPEELDTSILESLSKHF 76 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~~ 76 (324)
|+|++|.|..+|. ++.+++|+.|+|++|.+ .+|.... +|..|+|++| .+..+|.+. ++|+.|+++++ .+..++
T Consensus 68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~ 144 (263)
T 1xeu_A 68 LHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV 144 (263)
T ss_dssp EECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG
T ss_pred EECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh
Confidence 5789999999998 99999999999999999 9886433 2333999985 677777653 78999999986 566665
Q ss_pred CCCCcccccceeccCC
Q 020571 77 RPTASRKLTYFMFTNC 92 (324)
Q Consensus 77 ~~~~~~~~~~l~~~nC 92 (324)
.-.....+..|++++|
T Consensus 145 ~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHccCCCCCEEECCCC
Confidence 3222344455555543
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.72 E-value=0.00011 Score=64.27 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=36.9
Q ss_pred CeecCCCCCccch--hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPA--SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~--~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C 69 (324)
|+|++|+|..++. .++.+++|+.|+|++|.+ .+|. .+..+++ |+|+++ .+..+|. + .++|+.|+++++
T Consensus 37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC
Confidence 3566666665532 256666666666666666 5554 4555554 666653 3344432 1 245566666553
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.72 E-value=9.4e-05 Score=64.59 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=65.9
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCC-CC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C~ 70 (324)
|+|++|.|..+ |..+..+++|++|+|++|.+ .+|.. +..+++ |+|+++ ++..++ .. .++|+.|+++++
T Consensus 61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N- 138 (220)
T 2v9t_B 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN- 138 (220)
T ss_dssp EECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-
Confidence 57899999877 77899999999999999999 99976 466665 999985 566664 32 378999999985
Q ss_pred CCCccCCC-CC-cccccceeccC
Q 020571 71 SLSKHFRP-TA-SRKLTYFMFTN 91 (324)
Q Consensus 71 sL~~~~~~-~~-~~~~~~l~~~n 91 (324)
.+..++.. +. ...+..|.+.+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCEECHHHHhCCCCCCEEEeCC
Confidence 57776653 22 23445566543
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.71 E-value=2.3e-05 Score=72.21 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=70.7
Q ss_pred CeecCCCCC---ccchhhcCCCCCCEEEccC-CCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571 1 MNLVENKLE---SLPASIGCLSSLEFLHLTR-NNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~-n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~ 68 (324)
|+|++|+|. .+|..++.+++|++|+|++ |++ .+|..|.++++ |+|+++.-...+|.. .++|+.|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 578899997 6999999999999999996 888 89999998887 999987655577753 37899999999
Q ss_pred CCCCCccCCCCC-cccccceeccCC
Q 020571 69 LESLSKHFRPTA-SRKLTYFMFTNC 92 (324)
Q Consensus 69 C~sL~~~~~~~~-~~~~~~l~~~nC 92 (324)
+.--..+|..+. ..++..|++.++
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSS
T ss_pred CccCCcCChHHhcCCCCCeEECcCC
Confidence 743335554433 245556776654
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.71 E-value=5.4e-05 Score=69.98 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=52.8
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCcc
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKH 75 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~ 75 (324)
+++++.+..+|. ++.+++|++|+|++|.+ .+|. +..+++ |++++| .+..+|.+. ++|+.|++.+| .+..+
T Consensus 50 ~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n-~i~~~ 125 (347)
T 4fmz_A 50 VVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNED-NISDI 125 (347)
T ss_dssp ECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTS-CCCCC
T ss_pred EEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCC-cccCc
Confidence 566677777764 77777777777777777 7765 555555 777665 455555432 56677777664 34444
Q ss_pred CCCCCcccccceeccCCccc
Q 020571 76 FRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 76 ~~~~~~~~~~~l~~~nC~~L 95 (324)
+......++..|++.+|..+
T Consensus 126 ~~~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 126 SPLANLTKMYSLNLGANHNL 145 (347)
T ss_dssp GGGTTCTTCCEEECTTCTTC
T ss_pred hhhccCCceeEEECCCCCCc
Confidence 33222234445555555433
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.71 E-value=5.3e-05 Score=70.03 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~ 74 (324)
|+|++|.+..+|. +..+++|++|+|++|.+ .+| .+..+++ |++++| .+..+|.+ .++|+.|++.+|..+..
T Consensus 71 L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 71 LNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCC
T ss_pred EEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCccc
Confidence 4788999999987 99999999999999999 887 4777776 889875 45666654 37899999999987776
Q ss_pred cCCCCCcccccceeccCCc
Q 020571 75 HFRPTASRKLTYFMFTNCL 93 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC~ 93 (324)
++.-.....+..|.+.+|.
T Consensus 148 ~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 148 LSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp CGGGTTCTTCCEEECCSSC
T ss_pred ccchhhCCCCcEEEecCCC
Confidence 6653344556677776664
No 53
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.70 E-value=1.6e-05 Score=66.74 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=56.1
Q ss_pred CeecCCCCCccchhhcCCC-CCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLS-SLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~-~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~s 71 (324)
++|++|+|..+|. +..+. +|+.|+|++|.+ .+ ..+..+++ |+|+++ .+..+|. + .++|+.|+++++ .
T Consensus 24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-S 99 (176)
T ss_dssp EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-c
Confidence 4677888887764 54444 888888888888 77 45666665 888774 4666663 2 367888888875 4
Q ss_pred CCccCC--CCC-cccccceeccCC
Q 020571 72 LSKHFR--PTA-SRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~~--~~~-~~~~~~l~~~nC 92 (324)
+..++. .+. ...+..|.+.++
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCcchhhHhhhcCCCCCEEEecCC
Confidence 555554 221 234455555544
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.69 E-value=0.00012 Score=65.76 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=65.6
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL 72 (324)
+++++|.+..++ .++.+++|+.|+|++|.+ .+| .+..+++ |+|++| .+..+|. + .++|+.|++.+| .+
T Consensus 46 L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l 121 (272)
T 3rfs_A 46 IIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QL 121 (272)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred eeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cC
Confidence 357778888877 589999999999999999 876 5777766 999886 5666664 2 378999999986 46
Q ss_pred CccCCC-C-CcccccceeccCC
Q 020571 73 SKHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~-~-~~~~~~~l~~~nC 92 (324)
..++.. + ....+..|++.+|
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHHHhccCCCCCEEECCCC
Confidence 666543 2 2355667888776
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.69 E-value=7.1e-05 Score=73.56 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=66.4
Q ss_pred CeecCCCCCc-cch---hhcCCCCCCEEEccCCCc-cCCc---ccccCCc---cccccccccCcCCCC---CCCCcEEec
Q 020571 1 MNLVENKLES-LPA---SIGCLSSLEFLHLTRNNL-SLPE---LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDT 66 (324)
Q Consensus 1 ~~L~~~~l~~-lP~---~i~~l~~L~~L~L~~n~~-~lP~---~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~ 66 (324)
|+|++|.+.. +|. .++.+++|+.|+|++|.+ .+|. .+..+++ |+|++| ++..+|.. +++|+.|++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEEC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEEC
Confidence 5788998874 443 378899999999999999 8873 4666666 999986 67788863 478999999
Q ss_pred CCCCCCCccCCCCCcccccceeccCC
Q 020571 67 SILESLSKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 67 ~~C~sL~~~~~~~~~~~~~~l~~~nC 92 (324)
++|. +..++.... ..+..|++++|
T Consensus 418 s~N~-l~~l~~~~~-~~L~~L~Ls~N 441 (549)
T 2z81_A 418 SSTG-IRVVKTCIP-QTLEVLDVSNN 441 (549)
T ss_dssp TTSC-CSCCCTTSC-TTCSEEECCSS
T ss_pred CCCC-cccccchhc-CCceEEECCCC
Confidence 9974 766664432 34567777766
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.69 E-value=1.6e-05 Score=80.65 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCCCCccchhhcCCCCCCEEEccCCCc-c------------------CCcccc--cCCc---cccccccccCcCCCCC--
Q 020571 5 ENKLESLPASIGCLSSLEFLHLTRNNL-S------------------LPELPV--LLSH---IEARNCKQLQSLPELP-- 58 (324)
Q Consensus 5 ~~~l~~lP~~i~~l~~L~~L~L~~n~~-~------------------lP~~i~--~L~~---L~l~~C~~L~~lP~lp-- 58 (324)
+|+|+.||..++.+++|++|+|++|.+ . +|..|+ ++++ |+|++|.....+|...
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456667888899999999999999988 7 898888 8877 8888888888888542
Q ss_pred -CCCcEEecCCCCCCCc--cCC
Q 020571 59 -SCPEELDTSILESLSK--HFR 77 (324)
Q Consensus 59 -~sL~~L~~~~C~sL~~--~~~ 77 (324)
++|+.|++++|..+.. +|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCCCEEECcCCCCCccccchH
Confidence 5788888888764553 554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.69 E-value=6.6e-05 Score=72.49 Aligned_cols=94 Identities=22% Similarity=0.175 Sum_probs=61.3
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~ 70 (324)
|+|++|+|..+ |..++.+++|+.|+|++|.+ .++ ..+.++++ |+|+++ ++..+|.- .++|+.|+++++
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 157 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN- 157 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-
Confidence 46778888765 55678888888888888888 555 56666665 888774 46666642 367888888875
Q ss_pred CCCccCCC-C-CcccccceeccCCcccc
Q 020571 71 SLSKHFRP-T-ASRKLTYFMFTNCLKLN 96 (324)
Q Consensus 71 sL~~~~~~-~-~~~~~~~l~~~nC~~L~ 96 (324)
.++.++.. + ....+..|++.+|.++.
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 46666542 1 22345556666555443
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.69 E-value=0.00013 Score=62.56 Aligned_cols=66 Identities=38% Similarity=0.421 Sum_probs=33.4
Q ss_pred eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCC
Q 020571 2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~ 68 (324)
+|++|+|..+|.. ++.+++|+.|+|++|++ .+|.. +..+++ |+|+++ ++..+|. + .++|+.|++++
T Consensus 34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCC
Confidence 4556666555543 35566666666666666 55543 233433 555553 3344432 1 24455555554
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.69 E-value=1.6e-05 Score=64.71 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=57.6
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCC--C-C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLP--E-L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP--~-l--p~sL~~L~~~~C~ 70 (324)
++|++|.|..+ ..++.+++|++|+|++|.+ . +|..+..+++ |++++|. +..+| . + .++|+.|++++|
T Consensus 47 L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N- 123 (149)
T 2je0_A 47 LSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC- 123 (149)
T ss_dssp EECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-
T ss_pred EECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-
Confidence 47889999888 6799999999999999999 7 8887766766 9999864 55553 1 2 368999999997
Q ss_pred CCCccC
Q 020571 71 SLSKHF 76 (324)
Q Consensus 71 sL~~~~ 76 (324)
.+..++
T Consensus 124 ~l~~~~ 129 (149)
T 2je0_A 124 EVTNLN 129 (149)
T ss_dssp GGGGST
T ss_pred cccchH
Confidence 555554
No 60
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.68 E-value=0.00014 Score=62.49 Aligned_cols=33 Identities=52% Similarity=0.739 Sum_probs=15.4
Q ss_pred eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCC
Q 020571 2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLP 34 (324)
Q Consensus 2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP 34 (324)
+|++|+|+.+|.. +..+++|++|+|++|.+ .+|
T Consensus 58 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 3444444444433 24445555555555555 444
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.68 E-value=5.6e-05 Score=69.63 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=56.3
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~ 73 (324)
++|++|+|+.+|. .++.+++|++|+|++|.+ .+ |..+.++++ |+|+++ .+..+|. ++++|+.|++.++ .+.
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n-~l~ 134 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHEN-EIT 134 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhcccccEEECCCC-ccc
Confidence 4677777777665 577778888888888887 65 666776665 777764 4666663 4577888887775 344
Q ss_pred ccCCC-C-CcccccceeccCC
Q 020571 74 KHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 74 ~~~~~-~-~~~~~~~l~~~nC 92 (324)
.++.. + ....+..|++.++
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSS
T ss_pred ccCHhHhcCCccccEEECCCC
Confidence 44321 1 1233445555544
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=3.6e-05 Score=77.24 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=62.1
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcC--CCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSL--PEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~l--P~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.|+.+|..++.+++|+.|+|++|.+ .|| .+++|++ |+|+++ ++..+ |.. .++|+.|+++++ .
T Consensus 468 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~ 544 (567)
T 1dce_A 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-S 544 (567)
T ss_dssp EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-G
T ss_pred eecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-c
Confidence 5899999999999999999999999999999 999 7888887 999985 56666 542 378999999986 4
Q ss_pred CCccCC
Q 020571 72 LSKHFR 77 (324)
Q Consensus 72 L~~~~~ 77 (324)
|..++.
T Consensus 545 l~~~~~ 550 (567)
T 1dce_A 545 LCQEEG 550 (567)
T ss_dssp GGGSSS
T ss_pred CCCCcc
Confidence 655553
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.67 E-value=5.3e-05 Score=69.08 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=64.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
|+|++|.|..++. ++.+++|+.|+|++|.+ .+|. +..+++ |+|++| .+..++.+. ++|+.|++++| .+..
T Consensus 73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~ 148 (291)
T 1h6t_A 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITD 148 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred EEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCc
Confidence 4788899998887 89999999999999999 8775 777766 888875 566666543 78999999886 4555
Q ss_pred cCCCCCcccccceeccCC
Q 020571 75 HFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC 92 (324)
++.-....++..|++++|
T Consensus 149 ~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 149 ITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CGGGGGCTTCSEEECCSS
T ss_pred chhhccCCCCCEEEccCC
Confidence 532223345566777665
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.67 E-value=9.8e-05 Score=66.51 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=39.6
Q ss_pred eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCC-CC---CCCCcEEecCCC
Q 020571 2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSIL 69 (324)
Q Consensus 2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C 69 (324)
+|++|+|..+|. .++.+++|+.|+|++|.+ .+ |..+.++++ |+|+++..+..++ .. .++|+.|++.+|
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 556666665553 456666666666666666 44 455555554 6666655555552 21 255666666664
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.66 E-value=0.0001 Score=67.22 Aligned_cols=89 Identities=27% Similarity=0.234 Sum_probs=64.6
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL 72 (324)
|+|++|.|..+ |..+..+++|+.|+|++|.+ .+|.. ..+++ |+|++ ..+..+|... ++|+.|+++++ .+
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l 112 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RL 112 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cC
Confidence 57888988876 45788999999999999999 88763 45554 88987 4677888643 67899999885 56
Q ss_pred CccCCC-CC-cccccceeccCC
Q 020571 73 SKHFRP-TA-SRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~-~~-~~~~~~l~~~nC 92 (324)
..++.. +. ..++..|.++++
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTS
T ss_pred cccCHHHHcCCCCCCEEECCCC
Confidence 666532 22 245666777665
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.65 E-value=0.00015 Score=64.24 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=60.2
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~ 70 (324)
|+|++|+|..++. .++.+++|++|+|++|.+ .++. .+..+++ |+|+++ ++..+|. -.++|+.|+++++
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 117 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN- 117 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-
Confidence 4678888876654 578888888888888888 6654 3566655 888774 4556552 2367888888875
Q ss_pred CCCccCCCC--CcccccceeccCC
Q 020571 71 SLSKHFRPT--ASRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~~--~~~~~~~l~~~nC 92 (324)
.+..++... ....+..|+++++
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCcChhHhccCCcccEEECcCC
Confidence 566666532 2345556666554
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.64 E-value=9.6e-05 Score=71.05 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=53.1
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~ 70 (324)
|+|++|+|..++ ..++.+++|+.|+|++|.+ .++ ..+.++++ |+|+++ ++..+|. + .++|+.|+++++
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 146 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN- 146 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-
Confidence 456777776654 5667777777777777777 555 44555555 777764 5556653 1 256777777764
Q ss_pred CCCccCCC-C-CcccccceeccCCcc
Q 020571 71 SLSKHFRP-T-ASRKLTYFMFTNCLK 94 (324)
Q Consensus 71 sL~~~~~~-~-~~~~~~~l~~~nC~~ 94 (324)
.++.++.. + ....+..|++.+|..
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred cccccCHHHhhhCcccCEeCCCCCCC
Confidence 35555432 1 123344455544433
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.64 E-value=6e-05 Score=76.25 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=39.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C 69 (324)
|+|++|.|..+|. ++.+++|+.|+|++|.+ .+| .+..|++ |+|++| .+..+|.+ .++|+.|++++|
T Consensus 70 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 70 LFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC
Confidence 4667777776665 67777777777777777 665 3555554 666654 34444433 245555555543
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.63 E-value=0.00016 Score=64.02 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=63.8
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s 71 (324)
+++++++|..+|..+. ++|+.|+|++|++ .++. .+.++++ |+|+++ .+..++. + .++|+.|+++++ .
T Consensus 19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~ 94 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-Q 94 (251)
T ss_dssp EECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred EecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-c
Confidence 3677888999998776 6899999999999 7665 5777766 999985 5555553 2 378999999985 5
Q ss_pred CCccCCCC--CcccccceeccCC
Q 020571 72 LSKHFRPT--ASRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~~~~--~~~~~~~l~~~nC 92 (324)
+..++... ...++..|+++++
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccChhHhcccCCCCEEEcCCC
Confidence 66666432 2345667777665
No 70
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=64.24 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc--ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE--LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~--~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~ 70 (324)
++++++.|+++|..+. ..++.|+|++|.+ .++. .+..+++ |+|+++ ++..++. + .++|+.|+++++
T Consensus 16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-
Confidence 4678888989998764 4568999999999 7743 3666666 888874 4666653 2 377899999885
Q ss_pred CCCccCCC-C-CcccccceeccCC
Q 020571 71 SLSKHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~-~-~~~~~~~l~~~nC 92 (324)
.+..++.. + ....+..|+++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCC
Confidence 45655542 2 2244556666554
No 71
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.61 E-value=0.00011 Score=68.24 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred eecCC-CCCccchhhcCCCCCCEEEccC-CCc-cCC-cccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCC
Q 020571 2 NLVEN-KLESLPASIGCLSSLEFLHLTR-NNL-SLP-ELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILE 70 (324)
Q Consensus 2 ~L~~~-~l~~lP~~i~~l~~L~~L~L~~-n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~ 70 (324)
+++++ +|..||. |+.+++|+.|+|++ |.+ .+| ..|.+|++ |+|+++ +|..+|. . .++|+.|++++ .
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-C
Confidence 45666 8999999 99999999999997 999 888 46777777 999985 6777764 2 47899999998 4
Q ss_pred CCCccCCCC-CcccccceeccC
Q 020571 71 SLSKHFRPT-ASRKLTYFMFTN 91 (324)
Q Consensus 71 sL~~~~~~~-~~~~~~~l~~~n 91 (324)
.|..+|... ....+..|.+.+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCS
T ss_pred ccceeCHHHcccCCceEEEeeC
Confidence 788887543 223355666644
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.61 E-value=4.5e-05 Score=71.03 Aligned_cols=91 Identities=23% Similarity=0.230 Sum_probs=61.6
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC---C--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C 69 (324)
++|++|.|..++ ..++.+++|++|+|++|.+ .+|.. +.++++ |+|+++ .+..+|. + .++|+.|++.+|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCC
Confidence 467888888764 4588888888999988888 88875 666665 888874 5667765 2 367888888887
Q ss_pred CCCCccCCC-CC-cccccceeccCC
Q 020571 70 ESLSKHFRP-TA-SRKLTYFMFTNC 92 (324)
Q Consensus 70 ~sL~~~~~~-~~-~~~~~~l~~~nC 92 (324)
..+..++.. +. ...+..|++.+|
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ccccccCHHHccCCCCCCEEECCCC
Confidence 666666432 22 233444554443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.61 E-value=0.00018 Score=64.49 Aligned_cols=64 Identities=28% Similarity=0.313 Sum_probs=29.4
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~ 68 (324)
++++++|+.+|..+. ++|+.|+|++|++ .+|. .+.++++ |+|+++ .+..+|.- .++|+.|++.+
T Consensus 22 ~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 22 DCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp ECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred EccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 344445555554443 3455555555555 4443 3444443 555442 33344321 24455555554
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.00011 Score=77.41 Aligned_cols=89 Identities=19% Similarity=0.139 Sum_probs=60.4
Q ss_pred CeecCCCCCccch--hhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CC-CcEEecCCCC
Q 020571 1 MNLVENKLESLPA--SIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SC-PEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~--~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~s-L~~L~~~~C~ 70 (324)
|+|++|+|..+|. .++.+++|+.|+|++|.+ .|| .++++++ |+|++|. +..+|... ++ |+.|++++|.
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence 4677788888887 788888888888888888 888 6777766 7887754 44666421 34 8888888764
Q ss_pred CCCccCCCCCcc---cccceeccCC
Q 020571 71 SLSKHFRPTASR---KLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~~~~~---~~~~l~~~nC 92 (324)
+..+|..+... .+..|++++|
T Consensus 631 -L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 631 -LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp -CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred -CCcCchhhhccccCCCCEEECcCC
Confidence 66666544322 2445555554
No 75
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.60 E-value=0.00011 Score=73.31 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---ccccc
Q 020571 2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARN 47 (324)
Q Consensus 2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~ 47 (324)
+|++|.|..+ |..++.+++|++|+|++|.+ .+ |..|+++++ |+|++
T Consensus 62 ~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred eCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 3444444443 22344444444444444444 33 444444443 44444
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.59 E-value=6.3e-05 Score=73.59 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=56.9
Q ss_pred CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cCC---cccccCCc---cccccccccCcCCC----CCCCCcEEecCC
Q 020571 1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SLP---ELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~lP---~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~ 68 (324)
|+|++|.+.. +|..++.+++|+.|+|++|.+ .+| ..+..+++ |+|++|.....+|. ..++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 4677777765 777788888888888888877 654 45666655 77777654443653 236777777777
Q ss_pred CCCCCccCCCCCcccccceeccCC
Q 020571 69 LESLSKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 69 C~sL~~~~~~~~~~~~~~l~~~nC 92 (324)
|.--..++.... ..+..|++++|
T Consensus 409 N~l~~~~~~~l~-~~L~~L~Ls~N 431 (520)
T 2z7x_B 409 NILTDTIFRCLP-PRIKVLDLHSN 431 (520)
T ss_dssp SCCCGGGGGSCC-TTCCEEECCSS
T ss_pred CCCCcchhhhhc-ccCCEEECCCC
Confidence 643333333221 34455666555
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.57 E-value=7.6e-05 Score=69.47 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=72.3
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~ 70 (324)
|+|++|+|+.+|. .++.+++|+.|+|++|.+ .++ ..+.++++ |+|+++ ++..+|. -.++|+.|++.++
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n- 134 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN- 134 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-
Confidence 5789999998887 789999999999999999 764 56877776 999875 5667764 2478999999986
Q ss_pred CCCccCC--CC-CcccccceeccCCcccc
Q 020571 71 SLSKHFR--PT-ASRKLTYFMFTNCLKLN 96 (324)
Q Consensus 71 sL~~~~~--~~-~~~~~~~l~~~nC~~L~ 96 (324)
.+..++. .+ ...++..|++.+|..+.
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCcccCchhhhccCCCCcEEECCCCcccc
Confidence 6777765 22 23566788888875443
No 78
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.56 E-value=0.00021 Score=60.93 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=63.3
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcc--cccCCc---cccccccccCcC-CCC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPEL--PVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~--i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C~ 70 (324)
+++++++|+++|..+.. +|+.|+|++|.+ .+|.. +..+++ |+|+++ .+..+ |.. .++|+.|+++++
T Consensus 13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N- 88 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-
Confidence 47889999999987764 999999999999 88864 777776 999985 45555 432 378999999985
Q ss_pred CCCccCCC-C-CcccccceeccC
Q 020571 71 SLSKHFRP-T-ASRKLTYFMFTN 91 (324)
Q Consensus 71 sL~~~~~~-~-~~~~~~~l~~~n 91 (324)
.|..++.. + ....+..|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCS
T ss_pred cCCccCHHHhcCCCCCCEEECCC
Confidence 56666543 2 223444555543
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.55 E-value=7.4e-05 Score=73.07 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=44.4
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC-CCCCcEEecCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL-PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l-p~sL~~L~~~~C 69 (324)
|+|++|.|..+| ..+..+++|++|+|++|.+ .+ |..+.++++ |+|+++ ++..+|.. ..+|+.|++++|
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECCCCCCCSEEECCSS
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCccccCCccEEeccCC
Confidence 356667666655 4667777777777777777 55 556666665 777764 45566643 356777777775
No 80
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.54 E-value=9.9e-05 Score=61.87 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=48.7
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCC---C--CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C~ 70 (324)
|+|++|.|+.+ ..++.+++|++|+|++|.+ .+|..+ ..+++ |+|+++ .+..+|. + .++|+.|++.++
T Consensus 47 L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N- 123 (176)
T 1a9n_A 47 IDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN- 123 (176)
T ss_dssp EECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-
T ss_pred EECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-
Confidence 46777777777 4677788888888888888 777554 55555 777764 4566665 1 256777777775
Q ss_pred CCCccC
Q 020571 71 SLSKHF 76 (324)
Q Consensus 71 sL~~~~ 76 (324)
.+..++
T Consensus 124 ~i~~~~ 129 (176)
T 1a9n_A 124 PVTNKK 129 (176)
T ss_dssp GGGGST
T ss_pred CCCCcH
Confidence 344443
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.53 E-value=7.1e-05 Score=68.09 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=55.3
Q ss_pred CeecCCCCCcc---chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---C--CCCCcEEecCC
Q 020571 1 MNLVENKLESL---PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~l---P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~ 68 (324)
++|++|.|..+ |..+..+++|++|+|++|.+ .+|..+..+++ |+++++ .+..++. + .++|+.|++.+
T Consensus 57 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp EECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTT
T ss_pred EECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCC
Confidence 46777777644 66777788888888888888 88877776665 777764 3444443 1 25777777777
Q ss_pred CCCCCccCCCCC-cccccceeccCC
Q 020571 69 LESLSKHFRPTA-SRKLTYFMFTNC 92 (324)
Q Consensus 69 C~sL~~~~~~~~-~~~~~~l~~~nC 92 (324)
|.--...+..+. ...+..|.+.+|
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTC
T ss_pred CcCCccchhhcccCcCCCEEECCCC
Confidence 632222222221 234445555554
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.51 E-value=0.00032 Score=62.84 Aligned_cols=90 Identities=30% Similarity=0.313 Sum_probs=63.5
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~ 70 (324)
|+|++|+|..+|. .++.+++|++|+|++|.+ .+|..+ .++++ |+|+++ .+..+|. -.++|+.|++.++
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n- 119 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN- 119 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-
Confidence 4788889988876 688899999999999999 888754 55655 888874 4666663 2367888888875
Q ss_pred CCCccCCC-C-CcccccceeccCC
Q 020571 71 SLSKHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~-~-~~~~~~~l~~~nC 92 (324)
.+..++.. + ...++..|+++++
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCeeCHHHhCcCcCCCEEECCCC
Confidence 45555532 1 2345556666655
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.50 E-value=0.00019 Score=66.17 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=57.7
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLS 73 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~ 73 (324)
++|++|+|..+| ..++.+++|+.|+|++|.+ .+ |..+.++++ |+|+++ .+..+|. ++++|+.|++.++ .+.
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~L~~L~l~~n-~i~ 136 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSSLVELRIHDN-RIR 136 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccccccCCEEECCCC-ccC
Confidence 467777777664 3677788888888888888 55 566776665 777764 4566663 4477888888775 455
Q ss_pred ccCCC-C-CcccccceeccCC
Q 020571 74 KHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 74 ~~~~~-~-~~~~~~~l~~~nC 92 (324)
.++.. + ...++..|++.++
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSC
T ss_pred ccCHhHhCCCccCCEEECCCC
Confidence 55432 1 1234445555543
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.50 E-value=0.00011 Score=69.40 Aligned_cols=74 Identities=22% Similarity=0.122 Sum_probs=46.0
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
|+|++|.+..++ .++.+++|+.|+|++|.+ .+ |..+..+++ |+|++| ++..+|.. .++|+.|++++| .+
T Consensus 231 L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 231 LKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CC
T ss_pred EECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cc
Confidence 356677776654 567777777777777777 44 566666655 777663 45555542 256777777765 45
Q ss_pred CccCC
Q 020571 73 SKHFR 77 (324)
Q Consensus 73 ~~~~~ 77 (324)
..++.
T Consensus 308 ~~~~~ 312 (390)
T 3o6n_A 308 LHVER 312 (390)
T ss_dssp CCCGG
T ss_pred eecCc
Confidence 55543
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.50 E-value=0.00011 Score=68.67 Aligned_cols=75 Identities=24% Similarity=0.175 Sum_probs=36.1
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccC-CCc-cCCcc-cccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCCc
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTR-NNL-SLPEL-PVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLSK 74 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~-n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~ 74 (324)
+|++|+|+.||..+....+|+.|++++ |.+ .||.. +..+++ |+|+++ +++++|. ...+|+.|.+.+|..|+.
T Consensus 160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred ccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCc
Confidence 344555555555554455555555543 334 55532 233333 555542 4555543 234555555555555555
Q ss_pred cCC
Q 020571 75 HFR 77 (324)
Q Consensus 75 ~~~ 77 (324)
+|.
T Consensus 239 lP~ 241 (350)
T 4ay9_X 239 LPT 241 (350)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 86
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.48 E-value=0.00013 Score=66.39 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=22.5
Q ss_pred eecCCCCCc-cchhhcCCCCCCEEEccCCCc-c--CCcccccCCc---cccccc
Q 020571 2 NLVENKLES-LPASIGCLSSLEFLHLTRNNL-S--LPELPVLLSH---IEARNC 48 (324)
Q Consensus 2 ~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~--lP~~i~~L~~---L~l~~C 48 (324)
+|++|.+.. .|..++.+++|+.|+|++|.+ . +|..+..+++ |+|++|
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 444554442 233344555555555555555 3 4544444443 555543
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.48 E-value=0.0002 Score=64.08 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=44.8
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCC-C-C--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLP-E-L--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP-~-l--p~sL~~L~~~~C 69 (324)
|+|++|+|+.+|. .++.+++|++|+|++|.+ .+|. .+.++++ |+|+++. +..++ . + .++|+.|++.++
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC
Confidence 4677788877765 677788888888888888 6654 5666555 7777643 33333 2 1 256777777664
No 88
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.47 E-value=0.00033 Score=63.02 Aligned_cols=90 Identities=27% Similarity=0.250 Sum_probs=65.6
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCC-c-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNN-L-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~-~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C 69 (324)
|+|++|.|..+ |..++.+++|++|+|++|. + .+ |..+..+++ |+|++|. +..+ |.. .++|+.|++.++
T Consensus 61 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC
Confidence 47888989877 7789999999999999997 7 77 667777776 9998865 4444 432 378999999986
Q ss_pred CCCCccCCC-C-CcccccceeccCC
Q 020571 70 ESLSKHFRP-T-ASRKLTYFMFTNC 92 (324)
Q Consensus 70 ~sL~~~~~~-~-~~~~~~~l~~~nC 92 (324)
.+..++.. + ...++..|+++++
T Consensus 140 -~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 140 -ALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -cccccCHhHhccCCCccEEECCCC
Confidence 56666543 2 2345566777665
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.47 E-value=0.00024 Score=71.15 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=40.9
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
|+|++|.|..+|. .++.+++|+.|+|++|.+ .+|. .++++++ |+|++| .+..+|.- .++|+.|++++|
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence 3566666665543 666677777777777777 5554 3455554 666664 45555531 356677777665
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.47 E-value=0.00014 Score=75.14 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=62.2
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.+. .+|..++.+++|+.|+|++|.+ .+|..+..+++ |+|++|+....+|.. .++|+.|++.+|.-
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 466777765 6777788888888888888877 67777777666 777777665566643 36777788877754
Q ss_pred CCccCCCCCc-ccccceeccCCc
Q 020571 72 LSKHFRPTAS-RKLTYFMFTNCL 93 (324)
Q Consensus 72 L~~~~~~~~~-~~~~~l~~~nC~ 93 (324)
...+|..+.. ..+..|++.+|.
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcCChHHhcCCCCCEEECCCCc
Confidence 4455554332 345566666653
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.46 E-value=0.00017 Score=67.64 Aligned_cols=67 Identities=25% Similarity=0.274 Sum_probs=33.7
Q ss_pred CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571 1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~ 68 (324)
|+|++|+|..+|.... .+++|+.|+|++|.+ .+|. .+.++++ |+|+++ +|..+|.- ..+|+.|++++
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC
Confidence 3556666665554432 566666666666666 5543 3444444 555553 34444321 14445554444
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.46 E-value=0.00027 Score=68.73 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=41.7
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C 69 (324)
|+|++|.|..+| .++.+++|++|+|++|.+ .+| ++.+++ |+|++|. +..+| + .++|+.|+++++
T Consensus 47 L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 47 LDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTN 116 (457)
T ss_dssp EECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSS
T ss_pred EEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCC
Confidence 467777777776 577788888888888877 776 555554 6776643 44443 2 245666666554
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.44 E-value=0.00019 Score=67.24 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=61.1
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCC-CC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C~ 70 (324)
|+|++|+|..+|. .+..+++|+.|+|++|.+ .+|. .+..+++ |+|++++ +..++ .. ..+|+.|+++++
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N- 146 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN- 146 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-
Confidence 4678888887774 578888999999999988 7765 4666665 8888754 44443 21 367888888885
Q ss_pred CCCccCCCC-----CcccccceeccCC
Q 020571 71 SLSKHFRPT-----ASRKLTYFMFTNC 92 (324)
Q Consensus 71 sL~~~~~~~-----~~~~~~~l~~~nC 92 (324)
.|..++... ....+..|+++++
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 676666542 1344556666553
No 94
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.44 E-value=0.00025 Score=70.59 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=51.7
Q ss_pred CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C 69 (324)
|+|++|.|..+|. .++.+++|++|+|++|.+ .+ |..+.++++ |+|++|. +..+ |+. ..+|+.|++++|
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 4788888887765 788999999999999999 66 556777776 8898865 4444 542 367888888775
No 95
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.43 E-value=0.00034 Score=65.82 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=32.3
Q ss_pred eecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571 2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL 69 (324)
Q Consensus 2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C 69 (324)
+|++|.|..+|. .++.+++|++|+|++|.+ .+|. .+.++++ |+|++| .+..+|. + .++|+.|+++++
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC
Confidence 445555554443 455555555555555555 4432 3444443 555543 3444443 1 245555555554
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.43 E-value=0.00028 Score=63.16 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCCCcc
Q 020571 5 ENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESLSKH 75 (324)
Q Consensus 5 ~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL~~~ 75 (324)
+.++.++|..+. ++|+.|+|++|++ .+|. .+.++++ |+|++| .+..++. + .++|+.|+++++ .+..+
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 91 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSL 91 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCcc
Confidence 345678887664 5789999999998 7775 6766665 888886 5555553 2 368889998886 45554
Q ss_pred CC-CCC-cccccceeccCC
Q 020571 76 FR-PTA-SRKLTYFMFTNC 92 (324)
Q Consensus 76 ~~-~~~-~~~~~~l~~~nC 92 (324)
+. .+. ...+..|.+.++
T Consensus 92 ~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CTTTTTTCTTCCEEECTTS
T ss_pred ChhhhcCCccccEEECCCC
Confidence 42 222 234455555544
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.42 E-value=0.00026 Score=59.12 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=54.7
Q ss_pred CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
|+|++|.|..+|.. ++.+++|+.|+|++|.+ .+|.. +..+++ |+|+++ .+..+|.- .++|+.|++.++
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 57899999998876 58999999999999999 88875 566665 999985 67777752 367888888875
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.41 E-value=0.00036 Score=64.28 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=56.1
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
++|++|.+..++ ..+..+++|+.|+|++|.+ .+|. .+..+++ |+|++| ++..+|.- .++|+.|+++++ .
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~ 275 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-N 275 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-C
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-C
Confidence 578888888766 5788889999999999998 7764 6776665 888875 56677753 367888988885 5
Q ss_pred CCccCC
Q 020571 72 LSKHFR 77 (324)
Q Consensus 72 L~~~~~ 77 (324)
+..++.
T Consensus 276 l~~~~~ 281 (332)
T 2ft3_A 276 ITKVGV 281 (332)
T ss_dssp CCBCCT
T ss_pred CCccCh
Confidence 666653
No 99
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.39 E-value=0.00028 Score=68.26 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=46.6
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C 69 (324)
|+|++|+|..+ |..+..+++|+.|+|++|.+ .+ |..+.++++ |+|+++ ++..+|.- .++|+.|+++++
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCC
Confidence 46777777766 45677788888888888887 55 666776665 777764 46666631 266777777764
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.38 E-value=0.00025 Score=69.70 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=14.2
Q ss_pred eecCCCCCccch-hhcCCCCCCEEEccCCCc
Q 020571 2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL 31 (324)
Q Consensus 2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~ 31 (324)
+|++|+|..++. .+..+++|+.|+|++|.+
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 64 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcC
Confidence 444555544332 344455555555555544
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.37 E-value=0.00032 Score=69.54 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=40.1
Q ss_pred eecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC-CCCCcEEecCCCCCCCc
Q 020571 2 NLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL-PSCPEELDTSILESLSK 74 (324)
Q Consensus 2 ~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l-p~sL~~L~~~~C~sL~~ 74 (324)
+|++|.|..+| ..++.+++|++|+|++|.+ .+ |..+.++++ |+|+++ ++.++|.. .++|+.|+++++ .+..
T Consensus 58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~l~~L~~L~Ls~N-~l~~ 135 (562)
T 3a79_B 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCCPMASLRHLDLSFN-DFDV 135 (562)
T ss_dssp ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSCCCTTCSEEECCSS-CCSB
T ss_pred ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCccccccCCEEECCCC-Cccc
Confidence 55566665554 3556666666666666666 44 444555554 666653 34555543 255666666664 3444
Q ss_pred cC
Q 020571 75 HF 76 (324)
Q Consensus 75 ~~ 76 (324)
++
T Consensus 136 l~ 137 (562)
T 3a79_B 136 LP 137 (562)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.35 E-value=0.0002 Score=69.62 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=51.2
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCC----------ccccccccccCcCCCC-CCCCcEEecC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLS----------HIEARNCKQLQSLPEL-PSCPEELDTS 67 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~----------~L~l~~C~~L~~lP~l-p~sL~~L~~~ 67 (324)
|+|++|.|+.+| ++.+++|+.|+|++|.+ .+|. .+.+|. .|++++|..+..+|.- .++|+.|+++
T Consensus 217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCT
T ss_pred EECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECC
Confidence 356667776666 66777777777777777 5552 233332 1555555555555521 2567777777
Q ss_pred CCCCCCccCCCCCcccccceeccCCccc
Q 020571 68 ILESLSKHFRPTASRKLTYFMFTNCLKL 95 (324)
Q Consensus 68 ~C~sL~~~~~~~~~~~~~~l~~~nC~~L 95 (324)
+|..++.+|... ..+..+.+++|.+|
T Consensus 295 ~n~~l~~l~~~~--~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 295 HNTQLYLLDCQA--AGITELDLSQNPKL 320 (457)
T ss_dssp TCTTCCEEECTT--CCCSCCCCTTCTTC
T ss_pred CCcccceeccCC--CcceEechhhcccC
Confidence 776666665422 22334445555444
No 103
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.35 E-value=0.00033 Score=69.70 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=43.8
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC---CCCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C 69 (324)
|+|++|.|+.+ |..++.+++|++|+|++|.+ .+ |..|.++++ |+|++|.-....|. -..+|+.|++.+|
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 46777777766 55777788888888888877 44 566766665 77776543333232 1355666666554
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.33 E-value=0.00029 Score=68.17 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=55.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~ 74 (324)
|+|++|.+..++. ++.+++|+.|+|++|.+ .+|. +..+++ |+|++| ++..++.+ .++|+.|++.+| .+..
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~ 323 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISD 323 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSC
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCC
Confidence 4677788877775 77888888888888888 7776 655555 777765 34555433 267777777776 3443
Q ss_pred cCCCCCcccccceeccCC
Q 020571 75 HFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC 92 (324)
++.......+..|.+.+|
T Consensus 324 ~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 324 ISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp CGGGGGCTTCCEEECCSS
T ss_pred chhhccCccCCEeECCCC
Confidence 332222234455666555
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.32 E-value=2.6e-06 Score=73.15 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCccC
Q 020571 7 KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSKHF 76 (324)
Q Consensus 7 ~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~~~ 76 (324)
.|+.+|..++.+++|+.|+|++|.+ .+| .+.++++ |+|++| .+..+|... ++|+.|++++| .+..++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC
Confidence 4566777899999999999999999 988 7777766 888875 566777643 57888888875 555554
No 106
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.32 E-value=0.0003 Score=65.14 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=54.1
Q ss_pred CeecC-CCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCCC---CCCcEEecCCC
Q 020571 1 MNLVE-NKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~-~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C 69 (324)
|+|++ |.|..+| ..++.|++|+.|+|++|.| .+|. .|.+|++ |+|++ ++|..+|.-. .+|+.|++.+.
T Consensus 36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCC
Confidence 57886 8999888 4689999999999999999 7764 6677777 99997 6788887421 23888888774
No 107
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.30 E-value=0.00042 Score=68.94 Aligned_cols=74 Identities=22% Similarity=0.128 Sum_probs=45.5
Q ss_pred eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCC
Q 020571 2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLS 73 (324)
Q Consensus 2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~ 73 (324)
+|++|.+..+|.. ++.+++|+.|+|++|.+ .+|..+.++++ |++++|+.....|.. .++|+.|++.+|.-..
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 5666777766654 67777777777777777 77777766665 777765432222211 2566777776664333
Q ss_pred cc
Q 020571 74 KH 75 (324)
Q Consensus 74 ~~ 75 (324)
.+
T Consensus 340 ~~ 341 (606)
T 3t6q_A 340 EL 341 (606)
T ss_dssp BC
T ss_pred cc
Confidence 33
No 108
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.30 E-value=0.00038 Score=67.26 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=49.0
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC---CCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C 69 (324)
|+|++|.|..+ |..++.+++|++|+|++|.+ .+|.. +.++++ |+|++++-....|.. .++|+.|++.++
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 47788888876 77888999999999999999 88864 566655 888876533333322 256777777664
No 109
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.29 E-value=0.00046 Score=66.00 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=39.1
Q ss_pred CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571 1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C 69 (324)
++|++|.+.. +|..++.+++|+.|+|++|.+ .+ |..+..+++ |+|++|. +..+ |.. .++|+.|++++|
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC
Confidence 3566666654 355566777777777777777 44 445555554 6666643 3333 221 355666666665
No 110
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.28 E-value=0.00048 Score=69.59 Aligned_cols=66 Identities=30% Similarity=0.379 Sum_probs=32.4
Q ss_pred eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC--C--CCCCcEEecCC
Q 020571 2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSI 68 (324)
Q Consensus 2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~ 68 (324)
+|++|+|..+|. .++.+++|++|+|++|.+ .+ |..+.++++ |+|++| .+..+|. + ..+|+.|++++
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCC
Confidence 455555555543 355555566666655555 33 334444443 555543 3444443 1 24455555544
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.28 E-value=0.00015 Score=66.55 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=60.1
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCCCCCcEEecCCCCCCCcc
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELPSCPEELDTSILESLSKH 75 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~ 75 (324)
|+|++|+|..++ ..++.+++|+.|+|++|.+ .+++ +..+++ |+|++| .+..+|.. ++|+.|++.++ .+..+
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~-~~L~~L~l~~n-~l~~~ 114 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVG-PSIETLHAANN-NISRV 114 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEEC-TTCCEEECCSS-CCSEE
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccCC-CCcCEEECCCC-ccCCc
Confidence 578888888765 5788999999999999998 7775 777666 888875 46666644 67888888875 34444
Q ss_pred CCCCCcccccceeccCC
Q 020571 76 FRPTASRKLTYFMFTNC 92 (324)
Q Consensus 76 ~~~~~~~~~~~l~~~nC 92 (324)
+... ...+..|.++++
T Consensus 115 ~~~~-~~~L~~L~l~~N 130 (317)
T 3o53_A 115 SCSR-GQGKKNIYLANN 130 (317)
T ss_dssp EECC-CSSCEEEECCSS
T ss_pred Cccc-cCCCCEEECCCC
Confidence 3221 233445555543
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.27 E-value=0.0002 Score=70.25 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=59.1
Q ss_pred CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCCCCCcEEecCCCCCCCcc
Q 020571 1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELPSCPEELDTSILESLSKH 75 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~ 75 (324)
|+|++|.|..+| ..++.+++|++|+|++|.+ .+++ +..+++ |+|++| .+..+|.. ++|+.|++.+| .+..+
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~-~~L~~L~L~~N-~l~~~ 114 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVG-PSIETLHAANN-NISRV 114 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEEC-TTCCEEECCSS-CCCCE
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCCC-CCcCEEECcCC-cCCCC
Confidence 578888888765 5788999999999999998 6665 777766 888875 56666644 67888888775 34444
Q ss_pred CCCCCcccccceeccCC
Q 020571 76 FRPTASRKLTYFMFTNC 92 (324)
Q Consensus 76 ~~~~~~~~~~~l~~~nC 92 (324)
+... ...+..|++++|
T Consensus 115 ~~~~-l~~L~~L~L~~N 130 (487)
T 3oja_A 115 SCSR-GQGKKNIYLANN 130 (487)
T ss_dssp EECC-CSSCEEEECCSS
T ss_pred Cccc-cCCCCEEECCCC
Confidence 3221 123445555443
No 113
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.26 E-value=0.00041 Score=68.70 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=55.7
Q ss_pred CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cCCc---ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571 1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SLPE---LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI 68 (324)
Q Consensus 1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~lP~---~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~ 68 (324)
|+|++|.+.. +|..++.+++|+.|+|++|.+ .+|. .+.++++ |+|++++-...+|.- .++|+.|++++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 4677777775 677788888888888888887 7663 4555555 777776544436532 36677777777
Q ss_pred CCCCCccCCCCCcccccceeccCC
Q 020571 69 LESLSKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 69 C~sL~~~~~~~~~~~~~~l~~~nC 92 (324)
|.--..++.... ..+..|++++|
T Consensus 438 n~l~~~~~~~l~-~~L~~L~L~~N 460 (562)
T 3a79_B 438 NMLTGSVFRCLP-PKVKVLDLHNN 460 (562)
T ss_dssp SCCCGGGGSSCC-TTCSEEECCSS
T ss_pred CCCCcchhhhhc-CcCCEEECCCC
Confidence 643233333221 23445555554
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.25 E-value=0.00043 Score=67.00 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=66.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~ 74 (324)
++|++|.+..+|. ++.+++|+.|+|++|.+ .+|. +..+++ |+|++|. +..++.+ .++|+.|++.+| .+..
T Consensus 270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred EECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC-ccCC
Confidence 4788899998887 88999999999999999 8876 666666 9999874 4444433 378999999987 5666
Q ss_pred cCCCCCcccccceeccCCcc
Q 020571 75 HFRPTASRKLTYFMFTNCLK 94 (324)
Q Consensus 75 ~~~~~~~~~~~~l~~~nC~~ 94 (324)
++.-.....+..|++.+|.-
T Consensus 346 ~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 346 VSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CGGGTTCTTCCEEECCSSCC
T ss_pred chhhccCCCCCEEeCCCCcc
Confidence 64333345566777777643
No 115
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.18 E-value=0.00071 Score=62.13 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=51.3
Q ss_pred CeecCCCCC---ccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcC-CC---CCCCCcEEecCCCCC
Q 020571 1 MNLVENKLE---SLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSL-PE---LPSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~l-P~---lp~sL~~L~~~~C~s 71 (324)
++|++|.+. ..|..+..+++|+.|++++|.+ .+|..+. +|..|+|++++ +..+ |. -.++|+.|+++++ .
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~ 227 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-S 227 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-c
Confidence 356677665 3566677788888888888888 7776553 23337777654 3333 21 1256777777765 3
Q ss_pred CCccCC-CCC-cccccceeccCC
Q 020571 72 LSKHFR-PTA-SRKLTYFMFTNC 92 (324)
Q Consensus 72 L~~~~~-~~~-~~~~~~l~~~nC 92 (324)
+..++. .+. ...+..|++++|
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSS
T ss_pred CceeChhhccCCCCCCEEECCCC
Confidence 444432 121 234445555554
No 116
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.17 E-value=0.00043 Score=72.26 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=29.4
Q ss_pred chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC---C--CCCCcEEecCCC
Q 020571 12 PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSIL 69 (324)
Q Consensus 12 P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C 69 (324)
|..++.+++|++|+|++|++ .+ |..+++|++ |+|++|.....+|. + .++|+.|++++|
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 44455555555555555555 33 455555554 55555433333332 1 245666666654
No 117
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.17 E-value=0.00021 Score=65.48 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=41.4
Q ss_pred CeecCCCCC-ccchhh--cCCCCCCEEEccCCCc-cCCcccccC-----Cc---cccccccccCcCC-CC---CCCCcEE
Q 020571 1 MNLVENKLE-SLPASI--GCLSSLEFLHLTRNNL-SLPELPVLL-----SH---IEARNCKQLQSLP-EL---PSCPEEL 64 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i--~~l~~L~~L~L~~n~~-~lP~~i~~L-----~~---L~l~~C~~L~~lP-~l---p~sL~~L 64 (324)
|+|++|.|. .+|..+ +.+++|+.|+|++|.+ .+|..+..+ ++ |+|++++ +..+| .. .++|+.|
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEE
Confidence 356666665 566665 6677777777777777 666655554 33 6666643 34443 21 2566777
Q ss_pred ecCCCC
Q 020571 65 DTSILE 70 (324)
Q Consensus 65 ~~~~C~ 70 (324)
+++++.
T Consensus 179 ~Ls~N~ 184 (312)
T 1wwl_A 179 DLSDNP 184 (312)
T ss_dssp ECCSCT
T ss_pred ECCCCC
Confidence 777664
No 118
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.16 E-value=0.0003 Score=70.47 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=67.7
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
|+|++|.|..+ |..++.+++|+.|+|++|.+ .+|..+..+++ |+|++| .+..+|.. .++|+.|++.+| .+
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CC
Confidence 57899999865 78899999999999999999 99988776766 999986 55677643 278999999997 46
Q ss_pred CccCCCCCcccccceeccCC
Q 020571 73 SKHFRPTASRKLTYFMFTNC 92 (324)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~nC 92 (324)
..++. .....+..|+++++
T Consensus 337 ~~~~~-~~~~~L~~L~l~~N 355 (597)
T 3oja_B 337 VTLKL-STHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCC-CTTCCCSEEECCSS
T ss_pred CCcCh-hhcCCCCEEEeeCC
Confidence 65542 22244556666554
No 119
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.15 E-value=0.00086 Score=67.69 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=35.7
Q ss_pred eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571 2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL 69 (324)
Q Consensus 2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C 69 (324)
+|++|.+..+ |..++.+++|++|+|++|.+ .+|. .+.++++ |+|++| ++..+|. + ..+|+.|++.+|
T Consensus 55 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp ECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS
T ss_pred ECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC
Confidence 5556655544 44556666666666666666 6664 3555554 666554 2344431 1 245555555554
No 120
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.14 E-value=0.00061 Score=65.14 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=35.1
Q ss_pred eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571 2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL 72 (324)
Q Consensus 2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL 72 (324)
+|++|.|..+ |..++.+++|+.|+|++|.+ .+ |..+..+++ |+|++|+-....|.. .++|+.|++.++ .+
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-cc
Confidence 4555555543 33555555555666655555 44 334444444 555554322222321 145555555553 34
Q ss_pred CccC
Q 020571 73 SKHF 76 (324)
Q Consensus 73 ~~~~ 76 (324)
..++
T Consensus 384 ~~~~ 387 (455)
T 3v47_A 384 KSVP 387 (455)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 4444
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.13 E-value=0.00045 Score=64.36 Aligned_cols=67 Identities=31% Similarity=0.426 Sum_probs=53.8
Q ss_pred eecC-CCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCccccccccccCcCCCCC--CCCcEEecCC
Q 020571 2 NLVE-NKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSHIEARNCKQLQSLPELP--SCPEELDTSI 68 (324)
Q Consensus 2 ~L~~-~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~ 68 (324)
++++ +.++.||.+ +..+++|+.|+|++|++ .||.. +.+|.+|.+.+|.+|+++|.+. .+|+.+++.+
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 4554 578899976 48899999999999999 99974 6677778888889999999765 5777777654
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.11 E-value=1.6e-05 Score=68.17 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=62.9
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK 74 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~ 74 (324)
|+|++|.|..+| .++.+++|+.|+|++|.+ .+|..+..+++ |+|++| .+..+|.+. ++|+.|++.++ .+..
T Consensus 53 L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N-~i~~ 129 (198)
T 1ds9_A 53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN-KITN 129 (198)
T ss_dssp EECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEE-ECCC
T ss_pred EECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCC-cCCc
Confidence 467888888888 888999999999999999 99987765554 888875 666676543 67888988885 4554
Q ss_pred cCC---CCCcccccceeccCC
Q 020571 75 HFR---PTASRKLTYFMFTNC 92 (324)
Q Consensus 75 ~~~---~~~~~~~~~l~~~nC 92 (324)
++. -.....+..|.+.++
T Consensus 130 ~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 130 WGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHHTTTTTCSEEEECSC
T ss_pred hhHHHHHhcCCCCCEEEecCC
Confidence 432 112234456666554
No 123
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.10 E-value=0.00039 Score=63.79 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=65.7
Q ss_pred CeecCCCCCccc-hhh-cCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571 1 MNLVENKLESLP-ASI-GCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES 71 (324)
Q Consensus 1 ~~L~~~~l~~lP-~~i-~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s 71 (324)
|+|++|.|..++ ..+ ..+++|+.|+|++|.+ .+|... .+++ |+|++| ++..+|.- .++|+.|+++++ .
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-c
Confidence 578999998754 445 4789999999999999 887643 3444 999885 56666542 378999999996 6
Q ss_pred CCccCCCCCc-ccccceeccCCcc
Q 020571 72 LSKHFRPTAS-RKLTYFMFTNCLK 94 (324)
Q Consensus 72 L~~~~~~~~~-~~~~~l~~~nC~~ 94 (324)
+..+|..+.. ..+..|++.++.-
T Consensus 226 l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 226 LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCC
T ss_pred ccchhhHhhcCCCCCEEEccCCCc
Confidence 7788765533 4566777766543
No 124
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.09 E-value=0.0004 Score=68.30 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=65.4
Q ss_pred CeecCCCCCcc---chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC----CCCCCcEEecCCC
Q 020571 1 MNLVENKLESL---PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l---P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C 69 (324)
++|++|.+..+ |..+..+++|+.|+|++|.+ .+|..+..+++ |++++|......|. -.++|+.|++.+|
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 46788888755 78888999999999999999 88877777776 88888665444341 2367889999887
Q ss_pred CCCCccCCCCC-cccccceeccCCc
Q 020571 70 ESLSKHFRPTA-SRKLTYFMFTNCL 93 (324)
Q Consensus 70 ~sL~~~~~~~~-~~~~~~l~~~nC~ 93 (324)
.-....+..+. ...+..|.+.+|.
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCE
T ss_pred cccccchhhhhcCCcCcEEECcCCc
Confidence 54333443332 2456677777764
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.04 E-value=0.00035 Score=68.49 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=61.5
Q ss_pred CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCcc-CCC
Q 020571 1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKH-FRP 78 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~-~~~ 78 (324)
|+|++|.|..+++ ++.+++|++|+|++|.+ .+|.. .+|..|+|++|.--...+...++|+.|++.+| .+..+ +..
T Consensus 63 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 139 (487)
T 3oja_A 63 LNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLD 139 (487)
T ss_dssp EECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGBC
T ss_pred EEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC-CCcCEEECcCCcCCCCCccccCCCCEEECCCC-CCCCCCchh
Confidence 5789999987775 99999999999999999 88864 55555888886544333444578888988886 34444 222
Q ss_pred CC-cccccceeccCC
Q 020571 79 TA-SRKLTYFMFTNC 92 (324)
Q Consensus 79 ~~-~~~~~~l~~~nC 92 (324)
+. ...+..|+++++
T Consensus 140 ~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 140 EGCRSRVQYLDLKLN 154 (487)
T ss_dssp GGGGSSEEEEECTTS
T ss_pred hcCCCCCCEEECCCC
Confidence 22 234455666554
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.00 E-value=4.1e-05 Score=70.38 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=33.2
Q ss_pred eecCCCCCccchhhcCCCCCCEEEccCCCc-c--CCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCC
Q 020571 2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-S--LPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESL 72 (324)
Q Consensus 2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~--lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL 72 (324)
+++++.+...+..+..+++|+.|+|++|.+ . +|..+..+++ |+|++|.--...|. -.++|+.|++.+|..+
T Consensus 76 ~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 76 RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp ECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred EcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 344455544444455555566666665555 2 4544444443 55555432111111 1245555555555433
No 127
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.99 E-value=0.00099 Score=69.52 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=55.1
Q ss_pred CeecCCCCCcc-chhhcCCCCCCEEEccCCCc--cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571 1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL--SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE 70 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~--~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~ 70 (324)
|||++|.|..+ |.+++.+++|++|+|++|++ .| |..+.+|++ |+|++|.-....|+. ..+|+.|++++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 58899999865 77899999999999999955 77 677888877 999986544334543 3678999998874
Q ss_pred C
Q 020571 71 S 71 (324)
Q Consensus 71 s 71 (324)
-
T Consensus 109 l 109 (844)
T 3j0a_A 109 L 109 (844)
T ss_dssp C
T ss_pred C
Confidence 3
No 128
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.99 E-value=0.00028 Score=64.60 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=56.8
Q ss_pred CeecCCCCCccchhhcCC-----CCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcC-------CCCCCCCcE
Q 020571 1 MNLVENKLESLPASIGCL-----SSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSL-------PELPSCPEE 63 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i~~l-----~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~l-------P~lp~sL~~ 63 (324)
|+|++|.|..+|..++.+ ++|++|+|++|.+ .+| ..++++++ |+|++++....+ +.-.++|+.
T Consensus 126 L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205 (312)
T ss_dssp EEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE
T ss_pred EEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE
Confidence 578999999888888877 9999999999999 777 67888877 999988754331 133478999
Q ss_pred EecCCCCCCC
Q 020571 64 LDTSILESLS 73 (324)
Q Consensus 64 L~~~~C~sL~ 73 (324)
|++++| .+.
T Consensus 206 L~L~~N-~l~ 214 (312)
T 1wwl_A 206 LALRNA-GME 214 (312)
T ss_dssp EECTTS-CCC
T ss_pred EECCCC-cCc
Confidence 999986 454
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.00093 Score=60.96 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=53.5
Q ss_pred CeecCCCCCcc-chhhcCC---CCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCC--CCCCCcEEecCCC
Q 020571 1 MNLVENKLESL-PASIGCL---SSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPE--LPSCPEELDTSIL 69 (324)
Q Consensus 1 ~~L~~~~l~~l-P~~i~~l---~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~--lp~sL~~L~~~~C 69 (324)
|+|++|.|..+ |..++.+ ++|+.|+|++|.+ .+|..+. +|..|+|+++ ++..+|. -.++|+.|++++.
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence 58999999876 8888887 6999999999999 9998774 3333999975 5666654 3377888888774
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.74 E-value=0.00032 Score=64.30 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred CeecCCCCC-ccchhhcCCCCCCEEEccCC-Cc-c--CCcccccCCc---cccccccccCc--CC----CCCCCCcEEec
Q 020571 1 MNLVENKLE-SLPASIGCLSSLEFLHLTRN-NL-S--LPELPVLLSH---IEARNCKQLQS--LP----ELPSCPEELDT 66 (324)
Q Consensus 1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n-~~-~--lP~~i~~L~~---L~l~~C~~L~~--lP----~lp~sL~~L~~ 66 (324)
|+|++|.+. ..|..++.+++|+.|+|++| .+ . +|..+.++++ |+|++|..+.. ++ .+|.+|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 356677666 56667777777888888777 45 2 5655555554 77777744443 22 23337777777
Q ss_pred CCCC-CCC--ccCCCC-CcccccceeccCCcccc
Q 020571 67 SILE-SLS--KHFRPT-ASRKLTYFMFTNCLKLN 96 (324)
Q Consensus 67 ~~C~-sL~--~~~~~~-~~~~~~~l~~~nC~~L~ 96 (324)
.+|. .+. .++..+ ...++..|++++|..+.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 7764 231 122111 11344556666665443
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.79 E-value=0.0052 Score=52.23 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=56.3
Q ss_pred ccchhhcCCCCCCEEEccCCCc---cCCcccccCCc---cccccccccC-----cCCCC---CCCCcEEecCCCCCCCc-
Q 020571 10 SLPASIGCLSSLEFLHLTRNNL---SLPELPVLLSH---IEARNCKQLQ-----SLPEL---PSCPEELDTSILESLSK- 74 (324)
Q Consensus 10 ~lP~~i~~l~~L~~L~L~~n~~---~lP~~i~~L~~---L~l~~C~~L~-----~lP~l---p~sL~~L~~~~C~sL~~- 74 (324)
.+|.....--.|+.|||++|.+ .+. .+..+++ |+|++|.++. .|..+ .++|+.|++++|..+..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 4565332234699999999976 222 2344444 9999998653 34443 35799999999987653
Q ss_pred -cCCCCCcccccceeccCCcccch
Q 020571 75 -HFRPTASRKLTYFMFTNCLKLNK 97 (324)
Q Consensus 75 -~~~~~~~~~~~~l~~~nC~~L~~ 97 (324)
+..-....++..|.+.+|.++..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 11111235677899999999874
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.37 E-value=0.0019 Score=60.61 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=44.5
Q ss_pred CeecCCCCC----ccchhh-------cCCCCCCEEEccCCCc-c-----CCcccccCCc---ccccccccc----CcCCC
Q 020571 1 MNLVENKLE----SLPASI-------GCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQL----QSLPE 56 (324)
Q Consensus 1 ~~L~~~~l~----~lP~~i-------~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L----~~lP~ 56 (324)
++|++|.+. .+|..+ ..+++|++|+|++|.+ . +|..+..+++ |+|++|.-- ..++.
T Consensus 65 L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 144 (386)
T 2ca6_A 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144 (386)
T ss_dssp EECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred EeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH
Confidence 356776444 445555 6788888888888887 6 6777766665 888776531 11221
Q ss_pred CC------------CCCcEEecCCCC
Q 020571 57 LP------------SCPEELDTSILE 70 (324)
Q Consensus 57 lp------------~sL~~L~~~~C~ 70 (324)
.. ++|+.|++.+|.
T Consensus 145 ~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 145 ALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp HHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred HHHHHhhhhhcccCCCCcEEECCCCC
Confidence 11 577788887763
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.11 E-value=0.012 Score=53.29 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=35.0
Q ss_pred cCCCCCCEEEccCCCc-cCC---cccccCCc---cccccccccCcCCCC---C-CCCcEEecCCCC
Q 020571 16 GCLSSLEFLHLTRNNL-SLP---ELPVLLSH---IEARNCKQLQSLPEL---P-SCPEELDTSILE 70 (324)
Q Consensus 16 ~~l~~L~~L~L~~n~~-~lP---~~i~~L~~---L~l~~C~~L~~lP~l---p-~sL~~L~~~~C~ 70 (324)
..+++|+.|+|++|.+ .|+ ..+..+++ |+|++ +++..+.++ . .+|+.|++.++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence 4578888888888887 655 44445554 88875 444444322 1 188899988864
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.98 E-value=0.0031 Score=59.20 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=64.2
Q ss_pred CeecCCCCC------ccchhhcCCCCCCEEEccCCCc------cCCcccccCCc---cccccccccCc----CCC-C---
Q 020571 1 MNLVENKLE------SLPASIGCLSSLEFLHLTRNNL------SLPELPVLLSH---IEARNCKQLQS----LPE-L--- 57 (324)
Q Consensus 1 ~~L~~~~l~------~lP~~i~~l~~L~~L~L~~n~~------~lP~~i~~L~~---L~l~~C~~L~~----lP~-l--- 57 (324)
|+|++|.|. -+|..+..+++|+.|+|++|.+ .+|..+..+++ |+|++|.--.. +|. +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 478889887 3454888999999999999986 26777777766 99998763221 232 1
Q ss_pred -CCCCcEEecCCCCCCCc-----cCCCC-C-cccccceeccCCc
Q 020571 58 -PSCPEELDTSILESLSK-----HFRPT-A-SRKLTYFMFTNCL 93 (324)
Q Consensus 58 -p~sL~~L~~~~C~sL~~-----~~~~~-~-~~~~~~l~~~nC~ 93 (324)
.++|+.|++++|. +.. ++..+ . ...+..|++.+|.
T Consensus 272 ~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 272 ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5789999999974 444 55433 2 2456677777654
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.94 E-value=0.0041 Score=52.91 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=44.5
Q ss_pred CeecCCCCCc--cchhhcCCCCCCEEEccCCC-c------cCCcc---cccCCccccccccccC-----cCCCCCCCCcE
Q 020571 1 MNLVENKLES--LPASIGCLSSLEFLHLTRNN-L------SLPEL---PVLLSHIEARNCKQLQ-----SLPELPSCPEE 63 (324)
Q Consensus 1 ~~L~~~~l~~--lP~~i~~l~~L~~L~L~~n~-~------~lP~~---i~~L~~L~l~~C~~L~-----~lP~lp~sL~~ 63 (324)
|||++|.|+. +. .+..+++|+.|+|++|. + .|... -..|..|+|++|.++. .|-.+ ++|+.
T Consensus 66 LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~-~~L~~ 143 (176)
T 3e4g_A 66 IDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143 (176)
T ss_dssp EEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-TTCCE
T ss_pred EeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-CCCCE
Confidence 5778887762 32 46778888888888884 2 22211 0134448888887653 23333 67888
Q ss_pred EecCCCCCCC
Q 020571 64 LDTSILESLS 73 (324)
Q Consensus 64 L~~~~C~sL~ 73 (324)
|++.+|..+.
T Consensus 144 L~L~~c~~It 153 (176)
T 3e4g_A 144 LFLSDLPGVK 153 (176)
T ss_dssp EEEESCTTCC
T ss_pred EECCCCCCCC
Confidence 8888887654
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.79 E-value=0.016 Score=53.94 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=8.1
Q ss_pred hhcCCC-CCCEEEccCCCc
Q 020571 14 SIGCLS-SLEFLHLTRNNL 31 (324)
Q Consensus 14 ~i~~l~-~L~~L~L~~n~~ 31 (324)
.+..++ +|+.|+|++|.+
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l 63 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSL 63 (362)
T ss_dssp HHHTCCTTCCEEECCSSCG
T ss_pred HHHhCCCceeEEECcCCCC
Confidence 333444 444444444444
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.61 E-value=0.017 Score=52.90 Aligned_cols=18 Identities=22% Similarity=0.602 Sum_probs=13.8
Q ss_pred CCCCCEEEccCCCc-cCCc
Q 020571 18 LSSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 18 l~~L~~L~L~~n~~-~lP~ 35 (324)
+++|+.|+|++|++ .||.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp CTTCCEEECTTBCCCEECT
T ss_pred cCCCeEEECCCCCcceecH
Confidence 67788888887777 7775
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.78 E-value=0.004 Score=61.35 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=33.9
Q ss_pred eecCCCCC-ccchhhc-CCCCCCEEEccCC-Cc-c--CCcccccCCc---ccccccc-------ccCcCCCCCCCCcEEe
Q 020571 2 NLVENKLE-SLPASIG-CLSSLEFLHLTRN-NL-S--LPELPVLLSH---IEARNCK-------QLQSLPELPSCPEELD 65 (324)
Q Consensus 2 ~L~~~~l~-~lP~~i~-~l~~L~~L~L~~n-~~-~--lP~~i~~L~~---L~l~~C~-------~L~~lP~lp~sL~~L~ 65 (324)
+|++|.+. ..+..+. .+++|+.|+|++| .+ . ++..+.++++ |+|++|. .+..++.-.++|+.|+
T Consensus 111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~ 190 (594)
T 2p1m_B 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190 (594)
T ss_dssp EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEE
T ss_pred EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEE
Confidence 45555554 2333343 4666777777666 33 2 4433333333 6666554 1222333334566666
Q ss_pred cCCCC
Q 020571 66 TSILE 70 (324)
Q Consensus 66 ~~~C~ 70 (324)
+.+|.
T Consensus 191 l~~~~ 195 (594)
T 2p1m_B 191 ISCLA 195 (594)
T ss_dssp CTTCC
T ss_pred ecccC
Confidence 66553
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.63 E-value=0.0094 Score=58.66 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCCCCCEEEccCCCc--cCCccc----ccCCccccccccccCc--CCCC---CCCCcEEecCCCC
Q 020571 17 CLSSLEFLHLTRNNL--SLPELP----VLLSHIEARNCKQLQS--LPEL---PSCPEELDTSILE 70 (324)
Q Consensus 17 ~l~~L~~L~L~~n~~--~lP~~i----~~L~~L~l~~C~~L~~--lP~l---p~sL~~L~~~~C~ 70 (324)
.+++|+.|+|++|.+ ..+..+ .+|..|+|++|..+.. ++.+ .++|+.|++.+|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 456666666666655 223222 2222366666654433 2222 2466666666554
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=93.56 E-value=0.017 Score=53.76 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=35.8
Q ss_pred CeecCCCCCccch-h----hcC-CCCCCEEEccCCCc-cC-----Ccccc----cCCccccccccccCcCC---------
Q 020571 1 MNLVENKLESLPA-S----IGC-LSSLEFLHLTRNNL-SL-----PELPV----LLSHIEARNCKQLQSLP--------- 55 (324)
Q Consensus 1 ~~L~~~~l~~lP~-~----i~~-l~~L~~L~L~~n~~-~l-----P~~i~----~L~~L~l~~C~~L~~lP--------- 55 (324)
|+|++|.|...+. . +.. .++|+.|+|++|.+ .. +..+. +|..|+|++|. +....
T Consensus 114 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 192 (362)
T 3goz_A 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLA 192 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH
T ss_pred EECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHH
Confidence 4667777764443 2 223 25777777777765 32 22222 22227777653 32222
Q ss_pred CCCCCCcEEecCCC
Q 020571 56 ELPSCPEELDTSIL 69 (324)
Q Consensus 56 ~lp~sL~~L~~~~C 69 (324)
..|.+|+.|++++|
T Consensus 193 ~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 193 SIPASVTSLDLSAN 206 (362)
T ss_dssp TSCTTCCEEECTTS
T ss_pred hCCCCCCEEECCCC
Confidence 23457777777765
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.18 E-value=0.032 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=13.0
Q ss_pred cccccccccCcCCCCC------CCCcEEecCC
Q 020571 43 IEARNCKQLQSLPELP------SCPEELDTSI 68 (324)
Q Consensus 43 L~l~~C~~L~~lP~lp------~sL~~L~~~~ 68 (324)
|+|++ +++..++.+| ++|+.|++++
T Consensus 175 L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 175 LNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp EECTT-SCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred EECCC-CCCCCCccchhHHhhCCCCCEEECCC
Confidence 66655 3444444322 4566666655
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.63 E-value=0.082 Score=51.89 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=18.9
Q ss_pred cchhhcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571 11 LPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH 42 (324)
Q Consensus 11 lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~ 42 (324)
++..+..+++|+.|+|++|.+ .+|..+.+++.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 444445566666666666666 66655555544
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.59 E-value=0.08 Score=48.38 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=21.0
Q ss_pred eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCc
Q 020571 2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPE 35 (324)
Q Consensus 2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~ 35 (324)
+|++|+++.||.. +..+++|+.|+|++| + .|+.
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~ 266 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ 266 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH
Confidence 4555566666654 455677777777765 6 6664
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=91.58 E-value=0.037 Score=52.62 Aligned_cols=51 Identities=22% Similarity=0.101 Sum_probs=28.3
Q ss_pred CCCCCEEEccCCCc-c-----CCcccccCCc---cccccccccCcC------C---CCCCCCcEEecCCC
Q 020571 18 LSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQLQSL------P---ELPSCPEELDTSIL 69 (324)
Q Consensus 18 l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L~~l------P---~lp~sL~~L~~~~C 69 (324)
+++|+.|+|++|.+ . +|..+..+++ |+|++|. +... + .-.++|+.|++++|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 45677777777766 4 4555544444 6666653 2211 1 12356677777666
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=90.66 E-value=0.091 Score=49.82 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-CCcc----cc----cCCcccccccccc----CcCCC---CC
Q 020571 1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-LPEL----PV----LLSHIEARNCKQL----QSLPE---LP 58 (324)
Q Consensus 1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-lP~~----i~----~L~~L~l~~C~~L----~~lP~---lp 58 (324)
++|++|.|. .+|..+..+++|+.|+|++|.+ . .+.. +. +|..|+|++|.-- +.+|. -.
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 112 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC
Confidence 467777776 5677777788888888888876 3 2222 22 2444777776422 12221 12
Q ss_pred CCCcEEecCCCC
Q 020571 59 SCPEELDTSILE 70 (324)
Q Consensus 59 ~sL~~L~~~~C~ 70 (324)
++|+.|++++|.
T Consensus 113 ~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 113 PTLQELHLSDNL 124 (461)
T ss_dssp TTCCEEECCSSB
T ss_pred CceeEEECCCCc
Confidence 467777777654
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.54 E-value=0.2 Score=39.86 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=26.5
Q ss_pred eecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcc
Q 020571 2 NLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPEL 36 (324)
Q Consensus 2 ~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~ 36 (324)
+.++.+|+ .+|..|. .+|+.|+|++|+| .||..
T Consensus 14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~ 49 (130)
T 3rfe_A 14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPG 49 (130)
T ss_dssp ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT
T ss_pred EeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChh
Confidence 45667888 8997653 5799999999999 99974
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=88.01 E-value=0.078 Score=49.90 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=16.8
Q ss_pred CeecCCCCCc-----cchhh-cCCCCCCEEEccCCCc
Q 020571 1 MNLVENKLES-----LPASI-GCLSSLEFLHLTRNNL 31 (324)
Q Consensus 1 ~~L~~~~l~~-----lP~~i-~~l~~L~~L~L~~n~~ 31 (324)
|+|++|.|+. +...+ ...++|+.|+|++|.+
T Consensus 131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC
Confidence 3566666642 22222 2345677777777765
No 148
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.97 E-value=0.3 Score=38.78 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.3
Q ss_pred CeecCCCCCccchhh-cCCCCCCEEEccCCCc
Q 020571 1 MNLVENKLESLPASI-GCLSSLEFLHLTRNNL 31 (324)
Q Consensus 1 ~~L~~~~l~~lP~~i-~~l~~L~~L~L~~n~~ 31 (324)
|+|++|+|+.||..+ ..+++|+.|+|++|.+
T Consensus 36 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 36 LVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 589999999998865 6799999999999975
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=86.77 E-value=0.22 Score=46.78 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=36.0
Q ss_pred CeecCCCCCc--cchhhcCCCCCCEEEccCCCc-cCC-ccc--------ccCCccccccccccCc-----CC---CCCCC
Q 020571 1 MNLVENKLES--LPASIGCLSSLEFLHLTRNNL-SLP-ELP--------VLLSHIEARNCKQLQS-----LP---ELPSC 60 (324)
Q Consensus 1 ~~L~~~~l~~--lP~~i~~l~~L~~L~L~~n~~-~lP-~~i--------~~L~~L~l~~C~~L~~-----lP---~lp~s 60 (324)
|+|++|.|.. +..-...+++|+.|+|++|++ ... ..+ ..|..|+|++|. +.. ++ .-.++
T Consensus 106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSS
T ss_pred EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCC
Confidence 4677777752 222223355778888888876 322 112 123237777664 221 11 11345
Q ss_pred CcEEecCCCC
Q 020571 61 PEELDTSILE 70 (324)
Q Consensus 61 L~~L~~~~C~ 70 (324)
|+.|++++|.
T Consensus 185 L~~L~Ls~N~ 194 (372)
T 3un9_A 185 VTHLSLLHTG 194 (372)
T ss_dssp CCEEECTTSS
T ss_pred cCEEeCCCCC
Confidence 7777777753
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.42 E-value=0.8 Score=42.26 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=5.7
Q ss_pred CCCCCEEEcc
Q 020571 18 LSSLEFLHLT 27 (324)
Q Consensus 18 l~~L~~L~L~ 27 (324)
+.+|+.+.+.
T Consensus 262 ~~~l~~i~l~ 271 (379)
T 4h09_A 262 CTALKTLNFY 271 (379)
T ss_dssp CTTCCEEEEC
T ss_pred eehhcccccc
Confidence 4556666654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=83.85 E-value=0.83 Score=42.61 Aligned_cols=72 Identities=29% Similarity=0.334 Sum_probs=31.6
Q ss_pred cCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEec---CCCCCCCccCCCCCcccccceeccC
Q 020571 16 GCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDT---SILESLSKHFRPTASRKLTYFMFTN 91 (324)
Q Consensus 16 ~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~---~~C~sL~~~~~~~~~~~~~~l~~~n 91 (324)
..+.+|+.+.+..+ + .|++ --..+|.+|+++ .+|.+++.+.- .+|++|+.+.-+.....+..--|.+
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~-------~aF~~c~~L~~i-~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~ 364 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGE-------EAFESCTSLVSI-DLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQG 364 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECT-------TTTTTCTTCCEE-CCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTT
T ss_pred cccccccccccccc-cceech-------hhhcCCCCCCEE-EeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhC
Confidence 45677777777543 4 4432 123344444433 23444444431 2455555443222211222233555
Q ss_pred Ccccc
Q 020571 92 CLKLN 96 (324)
Q Consensus 92 C~~L~ 96 (324)
|.+|.
T Consensus 365 C~~L~ 369 (394)
T 4fs7_A 365 CINLK 369 (394)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 55554
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.21 E-value=1.3 Score=41.17 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=46.5
Q ss_pred cCCCCCCEEEccCCCc----------------cCCcccccCCccccccccccCcCCCCCCCCcEEe---cCCCCCCCccC
Q 020571 16 GCLSSLEFLHLTRNNL----------------SLPELPVLLSHIEARNCKQLQSLPELPSCPEELD---TSILESLSKHF 76 (324)
Q Consensus 16 ~~l~~L~~L~L~~n~~----------------~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~---~~~C~sL~~~~ 76 (324)
..+..|+.+.+..+-. .+|..+..+..--+.+|.+|+++ .+|.+++.+. -.+|++|+.+.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i-~lp~~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSI-DIPEGITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCEEE
T ss_pred eecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEE-EeCCcccEehHhHhhCCCCCCEEE
Confidence 3456777777754321 23333322222234577777765 3566777764 34788998764
Q ss_pred CCCCcccccceeccCCcccch
Q 020571 77 RPTASRKLTYFMFTNCLKLNK 97 (324)
Q Consensus 77 ~~~~~~~~~~l~~~nC~~L~~ 97 (324)
-+.....+..--|.+|.+|..
T Consensus 341 ip~sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 341 IPSSVTKIPESAFSNCTALNN 361 (394)
T ss_dssp ECTTCCBCCGGGGTTCTTCCE
T ss_pred ECcccCEEhHhHhhCCCCCCE
Confidence 433333344556889998864
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.75 E-value=2 Score=39.93 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=4.3
Q ss_pred eccCCcccc
Q 020571 88 MFTNCLKLN 96 (324)
Q Consensus 88 ~~~nC~~L~ 96 (324)
-|.+|.+|.
T Consensus 338 aF~~c~~L~ 346 (394)
T 4fs7_A 338 SFRGCTSLS 346 (394)
T ss_dssp TTTTCTTCC
T ss_pred hccCCCCCC
Confidence 344555553
No 154
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=80.62 E-value=0.39 Score=47.01 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=45.1
Q ss_pred eecCCC--CC-ccchhhc-CCCCCCEEEccCCCc---cCCcccccCCc---cccccccccC--cCCCC---CCCCcEEec
Q 020571 2 NLVENK--LE-SLPASIG-CLSSLEFLHLTRNNL---SLPELPVLLSH---IEARNCKQLQ--SLPEL---PSCPEELDT 66 (324)
Q Consensus 2 ~L~~~~--l~-~lP~~i~-~l~~L~~L~L~~n~~---~lP~~i~~L~~---L~l~~C~~L~--~lP~l---p~sL~~L~~ 66 (324)
+|++|+ +. ..+..++ .+++|+.|+|++|++ .+|..+..+++ |+|++|. +. .++.+ .++|+.|++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 455442 44 2333443 488999999999988 35555555554 9999997 32 13322 468999999
Q ss_pred CCCC
Q 020571 67 SILE 70 (324)
Q Consensus 67 ~~C~ 70 (324)
++|.
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 9986
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=79.77 E-value=0.33 Score=40.62 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=42.5
Q ss_pred CeecCC-CCC-----ccchhhcCCCCCCEEEccCCCc-c-----CCcccccCC---ccccccccccCc-----CC---CC
Q 020571 1 MNLVEN-KLE-----SLPASIGCLSSLEFLHLTRNNL-S-----LPELPVLLS---HIEARNCKQLQS-----LP---EL 57 (324)
Q Consensus 1 ~~L~~~-~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-----lP~~i~~L~---~L~l~~C~~L~~-----lP---~l 57 (324)
|+|++| .|. .+...+...++|+.|+|++|.+ . |...+...+ .|+|++|. +.. |. .-
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~ 119 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQS 119 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGG
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHh
Confidence 478888 885 4667778889999999999986 3 333343322 28887653 221 11 12
Q ss_pred CCCCcEEec
Q 020571 58 PSCPEELDT 66 (324)
Q Consensus 58 p~sL~~L~~ 66 (324)
..+|+.|++
T Consensus 120 n~~L~~L~L 128 (185)
T 1io0_A 120 NTSLIELRI 128 (185)
T ss_dssp CSSCCEEEC
T ss_pred CCCceEEEe
Confidence 357999999
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=79.62 E-value=1.9 Score=40.73 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.3
Q ss_pred hhcCCCCCCEEEccCCCc-cCCcc
Q 020571 14 SIGCLSSLEFLHLTRNNL-SLPEL 36 (324)
Q Consensus 14 ~i~~l~~L~~L~L~~n~~-~lP~~ 36 (324)
.+..+.+|+.++|++|++ .||..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTT
T ss_pred HhhCcccCCeeecCCCcceEechh
Confidence 345688999999999988 88764
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=73.40 E-value=4.1 Score=38.36 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=4.7
Q ss_pred CCCCEEEc
Q 020571 19 SSLEFLHL 26 (324)
Q Consensus 19 ~~L~~L~L 26 (324)
.+|+.+.|
T Consensus 248 ~~L~~i~l 255 (401)
T 4fdw_A 248 SGITTVKL 255 (401)
T ss_dssp CCCSEEEE
T ss_pred CCccEEEe
Confidence 45666666
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.56 E-value=9.2 Score=34.91 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=42.6
Q ss_pred hcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEec---CCCCCCCccCCCCCcccccceecc
Q 020571 15 IGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDT---SILESLSKHFRPTASRKLTYFMFT 90 (324)
Q Consensus 15 i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~---~~C~sL~~~~~~~~~~~~~~l~~~ 90 (324)
+..+.+|+.+.+.++.+ .|+.. -..+|.+|+++ .+|.+++.+.. .+|++|+.+.-+.....+..--|.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~-------aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i~ip~~v~~I~~~aF~ 353 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPR-------VFMDCVKLSSV-TLPTALKTIQVYAFKNCKALSTISYPKSITLIESGAFE 353 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTT-------TTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTT
T ss_pred cccccccccccccccccceehhh-------hhcCCCCCCEE-EcCccccEEHHHHhhCCCCCCEEEECCccCEEchhHhh
Confidence 35678999999998888 88752 23356666554 35566666643 367777765433222222233456
Q ss_pred CCccc
Q 020571 91 NCLKL 95 (324)
Q Consensus 91 nC~~L 95 (324)
+|..+
T Consensus 354 ~c~~~ 358 (379)
T 4h09_A 354 GSSIT 358 (379)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 66433
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=61.61 E-value=2.3 Score=35.25 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=44.7
Q ss_pred CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-----CCcccccCCc---ccc--ccccccCc-----CCC---
Q 020571 1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEA--RNCKQLQS-----LPE--- 56 (324)
Q Consensus 1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l--~~C~~L~~-----lP~--- 56 (324)
|+|++|.|. .+...+...++|+.|+|++|.+ . |...+...+. |+| +++ .+.. |-+
T Consensus 70 L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~ 148 (185)
T 1io0_A 70 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE 148 (185)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH
T ss_pred EECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH
Confidence 578899886 3666777778999999999987 3 4555554443 888 443 2221 111
Q ss_pred CCCCCcEEecCCC
Q 020571 57 LPSCPEELDTSIL 69 (324)
Q Consensus 57 lp~sL~~L~~~~C 69 (324)
--.+|+.|++.+|
T Consensus 149 ~n~~L~~L~L~~n 161 (185)
T 1io0_A 149 KNTTLLKFGYHFT 161 (185)
T ss_dssp HCSSCCEEECCCS
T ss_pred hCCCcCEEeccCC
Confidence 1256888888765
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=60.68 E-value=9.4 Score=35.41 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=22.8
Q ss_pred ccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCccccccc
Q 020571 10 SLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSHIEARNC 48 (324)
Q Consensus 10 ~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~L~l~~C 48 (324)
.++.-+..+++|+.|.|+||.- .+|. ...+|+.|+|..|
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG 203 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECS
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecC
Confidence 3555556677888888887743 5554 1223333666544
No 161
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=51.21 E-value=10 Score=20.98 Aligned_cols=16 Identities=25% Similarity=0.078 Sum_probs=10.8
Q ss_pred CCCcchhccCCcccee
Q 020571 302 DRSDEEEVELSPKRIC 317 (324)
Q Consensus 302 ~~~~~~~~~~~~k~~~ 317 (324)
.-+=.|++||++||-+
T Consensus 11 plewdedeepprkrkr 26 (28)
T 3ukw_C 11 PLEWDEDEEPPRKRKR 26 (28)
T ss_dssp CCCCCGGGSCCSSCCC
T ss_pred CcccccccCcchhhhc
Confidence 3444567788888855
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=49.00 E-value=16 Score=33.60 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=19.9
Q ss_pred cccccCcCCCCCCCCcEEec---CCCCCCCccCCCCCcccccceeccCCcccc
Q 020571 47 NCKQLQSLPELPSCPEELDT---SILESLSKHFRPTASRKLTYFMFTNCLKLN 96 (324)
Q Consensus 47 ~C~~L~~lP~lp~sL~~L~~---~~C~sL~~~~~~~~~~~~~~l~~~nC~~L~ 96 (324)
+|.+|+.+. +|.++..+.. .+|.+|+.+.-+.....+..-.|.+|.+|.
T Consensus 112 ~c~~L~~i~-~~~~~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~ 163 (394)
T 4gt6_A 112 FCSELTDIP-ILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLH 163 (394)
T ss_dssp TCTTCCBCG-GGTTCSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred hcccceeec-cCCccceehhhhhhhhcccccccccceeeeecccceecccccc
Confidence 444444331 3344444432 345555544333222222233455555554
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=31.46 E-value=11 Score=34.91 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=29.1
Q ss_pred CeecCCCCCc-cchhh---cCCCCCCEEEccCCCc-c-----CCcccccCCc---cccccc
Q 020571 1 MNLVENKLES-LPASI---GCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNC 48 (324)
Q Consensus 1 ~~L~~~~l~~-lP~~i---~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C 48 (324)
|+|.+|.+.. .+..+ +.+++|+.|+|+.|.+ . |+..+..+++ |+|++|
T Consensus 257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3566776642 22223 3578999999999987 4 4544443333 666554
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.48 E-value=23 Score=26.35 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=4.5
Q ss_pred eccCCcccc
Q 020571 88 MFTNCLKLN 96 (324)
Q Consensus 88 ~~~nC~~L~ 96 (324)
-|.+|.+|.
T Consensus 38 aF~~C~~L~ 46 (100)
T 2lz0_A 38 MFSGCTALE 46 (100)
T ss_dssp SSTTCTTCC
T ss_pred HHhccCCcc
Confidence 345555553
Done!