BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020573
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=prmC PE=3 SV=1
Length = 291
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 17/259 (6%)
Query: 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQS 125
L++W +WA+ + + P+ REL + L ++ +
Sbjct: 6 LQRWWHWAQGIIPA-----------PERESGLRELKQFLRAFTGLSPL--EITLRRFPPQ 52
Query: 126 VRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
+ L++ L EL W++R ++R P QYL+G HW DL L V V IPRPETE +L++
Sbjct: 53 IHLKLPLTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETE---ELLAV 109
Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245
V + G W+DLGTGSGAIAIG+AR+ + I AVD + A VA N Q+Y L
Sbjct: 110 VAATVPPWQQQGHWLDLGTGSGAIAIGLARLFPA-ALIHAVDCSSEALEVAQVNIQKYAL 168
Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
D + G+WF + ++G++ G+VSNPPYIP+ ++ LQ EV HEP LALDGG DGL
Sbjct: 169 GDRVRCYVGNWFDPIVPLQGQVQGIVSNPPYIPTSVVATLQPEVQYHEPLLALDGGTDGL 228
Query: 306 DYLLHLCNGTASMLKPDKW 324
+ + L+P W
Sbjct: 229 QAIRQILETAPEYLQPQGW 247
>sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1
Length = 299
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 4/224 (1%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQ-SVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEH 157
ELNWL++ + L L Q+ + + L+ + + W++R+E++ P QYL+G
Sbjct: 31 ELNWLLQGWTDLDRLT--LRLQDFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQ 88
Query: 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217
WRD V+ V + V IPRPETEL++D+V + WVDLGTGSGAIA+G+A
Sbjct: 89 WRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGTGSGAIALGLAATF 148
Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277
+ + AVD + A A+A NAQ D I+ QG W+ L+ ++G++ G+VSNPPYI
Sbjct: 149 -PQALVHAVDCSGSALAIARENAQLNQFGDRIQFHQGYWWEPLEHLKGQVQGMVSNPPYI 207
Query: 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
P +++ LQ EV KHEP LALDGG DGL + L + + LKP
Sbjct: 208 PQRELAQLQPEVIKHEPLLALDGGPDGLQAVEQLIRRSPTYLKP 251
>sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus
(strain PCC 7421) GN=prmC PE=3 SV=1
Length = 286
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 128/223 (57%), Gaps = 12/223 (5%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHW 158
E+++L+E L +LG ++ R ++L LW++RIE+ P QYL+G HW
Sbjct: 25 EIDYLIEAVTGLDRLRVRLGGPQALEAHR-----EKLAALWRRRIEEAMPLQYLLGTAHW 79
Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
RDL L V V IPRPE+E +VD+ D R G R VDLGTGSGAIA+ +AR L
Sbjct: 80 RDLQLQVNPAVLIPRPESEALVDVAVD-FCRSCAGARV---VDLGTGSGAIAVAVARAL- 134
Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
++ AVD + A VA N +RYGL + + + +G+WF L V+SNPPYIP
Sbjct: 135 PGATVWAVDASEAALVVAGANIERYGLSEQVHLLRGNWFVPLPT--QPFDAVLSNPPYIP 192
Query: 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
S +I+ L EV HEP ALDGG DGLD + + A L+P
Sbjct: 193 SAEIAALMPEVRLHEPLSALDGGSDGLDAVRQIIADAARHLRP 235
>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella
thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1
Length = 283
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 137 GLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDG 193
G + Q I++R P QYL G + + L V V IPR +TE++V+ V + L D
Sbjct: 55 GRFWQAIDRRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEAVLERL----DP 110
Query: 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253
D GTGSGAIA+ +A L + + A D++P A VA NA++ GL + + Q
Sbjct: 111 CESYTIADCGTGSGAIALSLAHYL-PRARVYATDISPAALTVAQENARKLGLAARVTLLQ 169
Query: 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313
G + L+ + KL +V+NPPYIP+ + GL +V + EPRLALDGG DGLD L
Sbjct: 170 GDFLAPLRGL--KLDALVANPPYIPTAALPGLPADV-RSEPRLALDGGPDGLDAYRFLLP 226
Query: 314 GTASMLKP 321
G A +L+P
Sbjct: 227 GAAGLLRP 234
>sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=prmC PE=3 SV=1
Length = 284
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 11/183 (6%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R KR+P QY++G + + L V V IPR +TE++V+ + L R +D
Sbjct: 70 RRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHA---AAVLD 123
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
+G GSG IA+ +A+ L ++ V+ +P A A+A NA+R+G + + + +GS F L
Sbjct: 124 IGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAERHGAR--VTLFEGSLFEPLG 180
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
D L +VSNPPYIP+ D+ LQ EV ++EPR ALDGG DGLD+ + L P
Sbjct: 181 DQRFDL--IVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLIVPAAPEYLNP 238
Query: 322 DKW 324
W
Sbjct: 239 GGW 241
>sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=prmC PE=3 SV=1
Length = 283
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R R+P YL+G + L L V+ V IPRPETEL+V+L R N
Sbjct: 61 ERRANREPVAYLIGHREFFGLDLFVDRRVLIPRPETELLVELTLKEAQRFNHT--PLIIA 118
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+GTGSGAIAI +A L I VD++P A AVAA N RY L D I + +G L
Sbjct: 119 DIGTGSGAIAIALAMHL-PHALIYGVDISPDALAVAAINVTRYRLDDRIRLLEGDLCTPL 177
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
+ +VSNPPY +I V +HEP LALDGG DGLD L + LK
Sbjct: 178 P---APVDILVSNPPYTILTEIDE---GVYRHEPHLALDGGSDGLDCYRRLIAAAPTYLK 231
Query: 321 PD 322
P+
Sbjct: 232 PN 233
>sp|Q97F67|PRMC_CLOAB Release factor glutamine methyltransferase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=prmC PE=3 SV=1
Length = 285
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
+K+ P +Y+ + L VE+GV IPRP+TE++V+ V + + +N D+
Sbjct: 65 KKKMPIRYITEKCEFMGLDFHVEKGVLIPRPDTEILVEAVLEYIELNNYKK----VCDVC 120
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
TGSGAI + IA+ ++ D++P A V+ N Q L+D ++I G K +
Sbjct: 121 TGSGAIGLSIAK-YAKDVEVLCSDISPDAIRVSKINRQGLNLEDRVKIENGDLLEKPIER 179
Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
K VVSNPPYI D+I L +V +EP +AL GG DGLD+ + + + +LKP
Sbjct: 180 GEKFDIVVSNPPYIREDEIPKLMDDVKDYEPIIALVGGEDGLDFYRRITSMSKKVLKP 237
>sp|Q9K4E3|PRMC_STRCO Release factor glutamine methyltransferase OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=prmC
PE=3 SV=1
Length = 281
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 7/180 (3%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R E R+P Q++ G ++R L L V GVF+PRPETE +V D VR D + VD
Sbjct: 60 RREAREPLQHITGRAYFRYLELQVGPGVFVPRPETESVVGWAIDA-VRAMDVVEPCI-VD 117
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
L TGSGAIA+ +A+ + + + AV+L+ A N + +++RQG
Sbjct: 118 LCTGSGAIALALAQEV-PRSRVHAVELSEDALKWTRRNME----GSRVDLRQGDALTAFP 172
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
D++G++ VVSNPPYIP + + E H+P LAL G DGLD + L +L+P
Sbjct: 173 DLDGQVDLVVSNPPYIPLTEWEYVAPEARDHDPELALFSGEDGLDLIRGLERTAHRLLRP 232
>sp|Q7VDL7|PRMC_PROMA Release factor glutamine methyltransferase OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=prmC PE=3
SV=1
Length = 293
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RD 196
+W + + + P Q+LVG WRD L V IPR ETE+++D+ L + + GL +
Sbjct: 67 IWMRHLSDQIPLQHLVGKCPWRDFELKVNSSALIPRQETEILIDIA---LKKVDAGLMKY 123
Query: 197 GFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
G W DLGTGSGA+A+ +AR L +G A D A A+A N + + G
Sbjct: 124 GRWADLGTGSGALAVALARALPLWEGH--AADCCNDALALAESNINTLTENANVSLHLGD 181
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W+ LK G VV+NPPYIP +S L V HEP LAL GG DG+D + G
Sbjct: 182 WWEPLKPWWGNFDLVVANPPYIPKTHLSELDPVVRDHEPILALSGGDDGMDSCRKVIKGA 241
Query: 316 ASMLKPDKW 324
L+ W
Sbjct: 242 MKGLRSGGW 250
>sp|Q9A9T7|PRMC_CAUCR Release factor glutamine methyltransferase OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=prmC PE=3 SV=2
Length = 289
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 95/185 (51%), Gaps = 11/185 (5%)
Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
+ +R +R+P +++G + + ++L V + V PRPETE++VD V F
Sbjct: 62 YLERRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAFPEHM-----AF 116
Query: 199 -WVDLGTGSGAIAIGI-ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256
+DLG GSG I + + A +KG + +D + A AVA NA L + G W
Sbjct: 117 SMLDLGVGSGTILLAVLAERPAAKG--LGIDASSEALAVARENAANLDLNTRAALLHGDW 174
Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316
L L VVSNPPYIP++ I L+ EV HEPRLALDGG DGL L
Sbjct: 175 TTGLGSDSFDL--VVSNPPYIPTEVIDTLEPEVRIHEPRLALDGGPDGLAAYRELAPEIL 232
Query: 317 SMLKP 321
+LKP
Sbjct: 233 RVLKP 237
>sp|B5YIQ8|PRMC_THEYD Release factor glutamine methyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=prmC PE=3 SV=1
Length = 279
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 96/171 (56%), Gaps = 14/171 (8%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD----NDGLRD 196
+R K++P QY++G ++ ++ + V GV IPRPETE++V+ VL R N G R
Sbjct: 56 ERRLKKEPLQYIIGECYFYNIKIKVGRGVLIPRPETEILVE---QVLERQKLISNTGNR- 111
Query: 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256
+DL TGSG IA+ I + + I +D + A A N ++++I + G
Sbjct: 112 --ILDLCTGSGCIALAIGKN-APEFQIFGIDKSEKAVKYATENKALNNIKNVIFLV-GDM 167
Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
F K E + + +NPPY+ +D+IS LQ E+ +EP AL+GG DGL++
Sbjct: 168 FNPFK--EKIFACITANPPYVKTDEISKLQPEIKNYEPLEALNGGEDGLNF 216
>sp|Q98G94|PRMC_RHILO Release factor glutamine methyltransferase OS=Rhizobium loti
(strain MAFF303099) GN=prmC PE=3 SV=1
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW--VDLGT 204
+P ++G + L LS+ PRP+TE +V+ V + R+G +DLGT
Sbjct: 74 EPVHRILGYREFYGLRLSLSPETLEPRPDTETLVEAVLPFV--KAMAAREGTCRILDLGT 131
Query: 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
G+GAIA+ + + + VD++ A A AA NA GL Q WF K V
Sbjct: 132 GTGAIALALLSAV-PAATATGVDISAGALATAARNAGELGLGGRFTTVQSDWFEK---VS 187
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD 306
G+ + +NPPYIP+ DI LQ EV +PRLALDGGVDGL+
Sbjct: 188 GRYHVIAANPPYIPTRDIGNLQDEVRDFDPRLALDGGVDGLN 229
>sp|Q81JX2|PRMC_BACAN Release factor glutamine methyltransferase OS=Bacillus anthracis
GN=prmC PE=3 SV=1
Length = 283
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 86/163 (52%), Gaps = 10/163 (6%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTG 205
P QY++G E + V E V IPRPETE +L+ VL R D D+GTG
Sbjct: 67 PIQYMIGHEMFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123
Query: 206 SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
SGAI+I +A L +K + VD+ + VA NA+ G + + G +
Sbjct: 124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAKTLGAE--VTFYHGDLLSPFYETG 179
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
KL VVSNPPYIP +D GL V +HEP+ AL GG DGLD+
Sbjct: 180 QKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDF 222
>sp|Q9KQ26|PRMC_VIBCH Release factor glutamine methyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=prmC PE=3 SV=1
Length = 286
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
+P Y++G + L L V IPRP+TE +V+ L D L DG +DLGTG+
Sbjct: 70 EPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVE-----LALDKAALIDGELLDLGTGT 124
Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGK 266
GAIA+ +A L ++ + +DL P AA +A NA R + + + QGSWF L D K
Sbjct: 125 GAIALALASELPTR-QVTGIDLRPEAAELARENATRLAIHN-AQFFQGSWFSPLAD-GTK 181
Query: 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324
+ +VSNPPYI +D L + + EP+ AL +GL + H+ L W
Sbjct: 182 FALIVSNPPYIEEND-PHLSLGDVRFEPKSALVAAENGLADIRHISTHAPHFLLDGGW 238
>sp|Q8R619|PRMC_FUSNN Release factor glutamine methyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=prmC PE=3 SV=1
Length = 354
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R +KRKP QY++G + L + EGV IPR +TE++V+ L+R+ + + +D
Sbjct: 117 RAKKRKPLQYILGEWEFYGLPFKMSEGVLIPRADTEILVEQCIQ-LMRE---VEEPNILD 172
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
+G+GSGAI+I +A L S S+ +D+N A +A N ++++ I + + FGKL
Sbjct: 173 IGSGSGAISIAVANELKS-SSVTGIDINEKAIKLAIENKILNKIENVNFI-ESNLFGKL- 229
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
D + K +VSNPPYI D+ L EV +EP+ AL DGL + + LK
Sbjct: 230 DKDFKYDLIVSNPPYISKDEYETLMPEVKNYEPQNALTDLGDGLHFYKEISKLAGEYLK 288
>sp|B8E004|PRMC_DICTD Release factor glutamine methyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=prmC PE=3 SV=1
Length = 282
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF--WVDLGTG 205
P Y++ + + D+ L VE GV IPR ETE+++++ D + L++G+ V++G G
Sbjct: 69 PLNYIIEKKQFYDIELFVERGVLIPRSETEILIEVAKDTI------LKEGYKKIVEIGVG 122
Query: 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEG 265
SG I+I +A+ I A D++P A VA FNA+++ + D IE G +
Sbjct: 123 SGNISITLAKEFKD-IKIYACDISPEAIKVARFNAKKHKVSDKIEFFFGFLLYPMVHRNV 181
Query: 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
++SNPPYI S + LQ EV K EP AL GG DG ++
Sbjct: 182 DFELIISNPPYIASWEFPFLQKEVKK-EPWKALYGGWDGCEF 222
>sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND----- 192
L ++R+E +P Y+ G + + V + V IPR +TE+++D+V ++V ND
Sbjct: 62 LLERRLE-HEPIAYITGIKEFYSREFIVNKHVLIPRIDTEILIDVVIGLVVSRNDLNTCS 120
Query: 193 ---------GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243
++ ++LGTGSG IAI + L + S+IA D++ A VA N ++
Sbjct: 121 KLKSLDSVKTIQHYNILELGTGSGCIAISLLCELPN-TSVIATDISVDAIKVAKSNTIKH 179
Query: 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD 303
+ D I+I +WF KL + K +VSNPPYI + + +E +EP +AL D
Sbjct: 180 NVTDRIQIIHSNWFEKLN--KQKFDLIVSNPPYISHSEKLEMAIETINYEPHIALFAEED 237
Query: 304 GLDYLLHLCNGTASMLKPD 322
GL+ + LKP+
Sbjct: 238 GLEAYSIIAKNAKQFLKPN 256
>sp|Q814U1|PRMC_BACCR Release factor glutamine methyltransferase OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=prmC PE=3 SV=1
Length = 283
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTG 205
P QY++G E + V E V IPRPETE +L+ VL R D D+GTG
Sbjct: 67 PIQYMIGYEIFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123
Query: 206 SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
SGAI+I +A L +K + VD+ + VA NA+ G + + G
Sbjct: 124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAKALGAE--VTFYHGDLLSPFHKTG 179
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
KL VVSNPPYIP +D GL V +HEP+ AL GG DGLD+
Sbjct: 180 QKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDF 222
>sp|Q9CHX0|PRMC_LACLA Release factor glutamine methyltransferase OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=prmC PE=3 SV=1
Length = 270
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R+ + +P QY+VG +RDL L V+E V IPRPETE +V+++ + + D L+ +
Sbjct: 56 KRLHQNEPPQYIVGWAEFRDLKLKVDERVLIPRPETEELVEMI--LAENEKDSLK---IL 110
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+GTGSGAIAI +A+ S+ A D++ A +AA NA+ Q +E Q K+
Sbjct: 111 DIGTGSGAIAISLAQA-RENWSVKASDISKEALTLAAENAEIN--QANLEFIQSDVLDKI 167
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
D +VSNPPYI D+ + V K+EP LAL GL
Sbjct: 168 TD---SFDIIVSNPPYIAFDETYEMDNSVIKYEPDLALFAENQGL 209
>sp|Q9ZCB3|RFTRM_RICPR Bifunctional methyltransferase OS=Rickettsia prowazekii (strain
Madrid E) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 20/201 (9%)
Query: 139 WKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND--- 192
+++ +E+R +P Y++G + + V + V IPR +TE++VD+V ++V N+
Sbjct: 59 FEKLLERRLAHEPIAYIIGVKEFYSREFIVNKHVLIPRIDTEVLVDVVIGLVVSRNNLHM 118
Query: 193 -----------GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
+ ++LGTGSG IAI + L + +IIA D++ A VA N+
Sbjct: 119 FSKLKSLDSVLTTQSYNILELGTGSGCIAISLLCELPN-TNIIATDISVDAIKVAKSNSI 177
Query: 242 RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301
+Y + D I+I +WF KL + K +VSNPPYI + + +E +EP +AL
Sbjct: 178 KYNVTDRIQIIHSNWFEKLD--KQKFDFIVSNPPYISHTEKLKMAIETINYEPSIALFAE 235
Query: 302 VDGLDYLLHLCNGTASMLKPD 322
DGL+ + LKP+
Sbjct: 236 EDGLEAYSIIAKNAKQFLKPN 256
>sp|A9CG70|PRMC_AGRT5 Release factor glutamine methyltransferase OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=prmC PE=3 SV=1
Length = 289
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 143 IEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
IE+R +P ++G + L L + + PRP+TE++VD + L
Sbjct: 67 IERRAEGEPVHRILGHREFHGLDLLLSKETLEPRPDTEVLVDTLLPALKEAVSRKGSARI 126
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+DLGTG+GAI + + + ++ S I D++ A AA NA R GL E + +WF K
Sbjct: 127 LDLGTGTGAICLALLKEC-AQASGIGSDISADALETAAKNAARNGLDSRFETIRSNWFEK 185
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
+ G+ +VSNPPYI +D ++ L EV H+P ALDGG DGL
Sbjct: 186 ---ISGRFDIIVSNPPYIRTDIVATLDPEVRNHDPMAALDGGQDGL 228
>sp|P45873|PRMC_BACSU Release factor glutamine methyltransferase OS=Bacillus subtilis
(strain 168) GN=prmC PE=3 SV=1
Length = 288
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Query: 130 IGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDV 186
IG DELY +K+ +E K P QY++G E + V + V IPRPETE +V + +
Sbjct: 48 IGEDELYR-FKRHVEMHKEGVPVQYIIGKEFFYGREFMVNDDVLIPRPETEEVVFHLLEK 106
Query: 187 L--VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244
V DG + VD+GTGSGAIA+ +A + S+ AVD++ A VA+ NA++ G
Sbjct: 107 YRSVFSEDGKLE--VVDVGTGSGAIAVTLA-LENQSFSVSAVDISKEALQVASANAEKLG 163
Query: 245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304
+ QG K +VSNPPYI ++++ L V HEP AL G DG
Sbjct: 164 AN--VRFYQGDLLEPFIKAGKKADIIVSNPPYISEEEMADLSEIVRFHEPLHALTDGGDG 221
Query: 305 LDY 307
L +
Sbjct: 222 LKF 224
>sp|Q7CIA2|PRMC_YERPE Release factor glutamine methyltransferase OS=Yersinia pestis
GN=prmC PE=3 SV=1
Length = 276
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 11/184 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
R E+ +P YLVG + L LSV IPRP+TE +V+ L + +
Sbjct: 60 NRREQGEPIAYLVGEREFWSLPLSVSSATLIPRPDTECLVEQALARLPAMPCRI-----L 114
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
DLGTG+GAIA+ +A ++IAVD+N A A+A NA++ + ++ + QGSWF
Sbjct: 115 DLGTGTGAIALALA-TERRDCAVIAVDINADAVALARHNAEKLTIDNVCFL-QGSWF--- 169
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
+ V G+ + + SNPPYI ++D + +V ++EP AL +G+ L + + L
Sbjct: 170 EPVSGRFALIASNPPYIDANDPHLNEGDV-RYEPHSALVAAAEGMADLAAIVSQAPGYLD 228
Query: 321 PDKW 324
P W
Sbjct: 229 PGGW 232
>sp|Q89XT8|PRMC_BRAJA Release factor glutamine methyltransferase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=prmC PE=3 SV=1
Length = 297
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
QR +P ++G + L + + +PRP+TE +V+ + L R+ +
Sbjct: 73 QRRIAGEPVARILGTREFWGLPFRLSDATLVPRPDTETVVERALE-LFREQKATQQPRIA 131
Query: 201 DLGTGSGAIAIGIAR-VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
D+GTGSGAI + + + G+ G + DL+ A A NA GL D S+
Sbjct: 132 DIGTGSGAILLALLHDIPGAFG--VGTDLSLNALETARGNAVTLGLADRSAFVACSYLAA 189
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
L+ G +VSNPPYIPS +I L +EV +H+P LALDGG DG D L A L
Sbjct: 190 LR---GPFDLIVSNPPYIPSAEIPKLSLEVREHDPHLALDGGNDGYDAYRALIPQAAERL 246
Query: 320 KP 321
P
Sbjct: 247 AP 248
>sp|Q92G13|RFTRM_RICCN Bifunctional methyltransferase OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=prmC/trmB PE=3 SV=1
Length = 524
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 23/198 (11%)
Query: 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN------------- 191
K +P Y+ G + + V + V IPR +TE++VD+V R++
Sbjct: 68 KHEPIVYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQPNPCFR 127
Query: 192 -----DGLRDGFW--VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244
+ D F ++LGTGSG IAI + L + ++IA D++ A + NA +Y
Sbjct: 128 GNDISENCNDKFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIDIIKSNAAKYE 186
Query: 245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304
+ D I+I +WF ++ K +VSNPPYI + S + +E +EP +AL DG
Sbjct: 187 VTDRIQIIHSNWFENIET--QKFDFIVSNPPYIAHSEKSEMAIETINYEPSIALFAEKDG 244
Query: 305 LDYLLHLCNGTASMLKPD 322
L + LKP+
Sbjct: 245 LQAYFLIAENAKQFLKPN 262
>sp|Q2RWE0|PRMC_RHORT Release factor glutamine methyltransferase OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=prmC PE=3 SV=1
Length = 325
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 142 RIEKRKPFQYLVGCE-HWR-DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
R E R+P ++G WR DL L + PRP+TE +V+ + + V + G G
Sbjct: 85 RRETREPVSRILGHRGFWRFDLALGAD--TLDPRPDTETLVE--AGLAVLEGCG---GRI 137
Query: 200 VDLGTGSGAIAIGIARVLGSKGSI-IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
+DLGTGSG I + + + G+I + +D+ P A VA NA+ GL+ G W
Sbjct: 138 LDLGTGSGCILLAL--LADRPGAIGLGIDIAPGAVRVALRNARALGLERRALFAVGDWAA 195
Query: 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318
V G +VSNPPYIPS DI+ L+ EV + +P ALDGG DGLD L ++
Sbjct: 196 A---VAGPFDLIVSNPPYIPSADIAALEPEVARFDPSRALDGGADGLDPYRILAAQVPAL 252
Query: 319 LKP 321
L P
Sbjct: 253 LAP 255
>sp|Q9RXR2|PRMC_DEIRA Release factor glutamine methyltransferase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=prmC PE=3 SV=1
Length = 278
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Query: 130 IGLDELYGLWK--QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVL 187
IG D W +R R P Q+L G W + L+ + +PRPETE ++ L + L
Sbjct: 49 IGPDAEARAWDSIERRAARVPLQHLTGEVEWGGVRLTSDARALVPRPETEWLLHLALEEL 108
Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247
R + +D+GTG+GA+A+G+ + + + A DL+P A ++A NA GL
Sbjct: 109 RR----VEKPRVLDVGTGTGALALGLKAAI-PQAEVTATDLSPEALSLARENAALSGLD- 162
Query: 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
++ +GS L G + +VSNPPY+P+ D + EV +H+P LAL G DGLD
Sbjct: 163 -VKFVEGSLLAGLS---GPFNLIVSNPPYLPTADRATADPEV-RHDPDLALYAGEDGLDV 217
Query: 308 LLHLCNGTASMLKP 321
L A+ L P
Sbjct: 218 ARPLVAEAAAALVP 231
>sp|Q83AD8|PRMC_COXBU Release factor glutamine methyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=prmC PE=3 SV=1
Length = 277
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 12/185 (6%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
K+R+ K +P Y++G + + L L V V IPRPETE++V+ + L +D + LR
Sbjct: 62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLR---I 116
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
DLGTGSGA+A+ IA V +I A D + A +A NA+++ +++ G W
Sbjct: 117 ADLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQHEIKN-CNFYHGEWCQA 174
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
L + +V NPPYIP D Q+ KHEPR AL G DGL + + + S L
Sbjct: 175 LPRRD--YHAIVGNPPYIPDKDQHLQQL---KHEPREALAAGSDGLSAIKIIIHEAKSYL 229
Query: 320 KPDKW 324
W
Sbjct: 230 VNGGW 234
>sp|Q8DPZ3|PRMC_STRR6 Release factor glutamine methyltransferase OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=prmC PE=3 SV=1
Length = 279
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 11/180 (6%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
Q++ KP QY++G + + L V+E V IPRPETE +V+L+ + N + +
Sbjct: 61 QQLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPETEELVELILTENLETNLSV-----L 115
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+GTGSGAIA+ +A+ S+ A D++ A +A NA+ LQ I +++ F ++
Sbjct: 116 DIGTGSGAIALALAKN-RPDWSVTAADISQEALDLARENAKNQNLQ--IFLKKSDCFTEI 172
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
+ K +VSNPPYI +D S + + V EP LAL DGL + LK
Sbjct: 173 SE---KYDIIVSNPPYISREDESEVGLNVLYSEPHLALFADEDGLAIYRRIAEDATDYLK 229
>sp|Q8PC99|PRMC_XANCP Release factor glutamine methyltransferase OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=prmC PE=3 SV=1
Length = 283
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
+G +R + +P YL G + L L+V IPR +TE +V+L + L G+R
Sbjct: 57 FGALVERRHQGEPVAYLTGSRGFWTLDLAVSTATLIPRADTETLVELALERL-ELTAGVR 115
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
VDLGTGSGAIA+ IA + +IA D + A A+A NA +GL + +E R G
Sbjct: 116 ---VVDLGTGSGAIALAIASER-PQAQLIATDASADALAIARHNAHAHGLHN-VECRLGH 170
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W L L + SNPPYI + D Q ++ ++EP AL G DGLD + + T
Sbjct: 171 WLQPLAGERFDL--IASNPPYIAAADPHLQQGDL-RYEPASALASGSDGLDDIRLIVADT 227
Query: 316 ASMLKPDKW 324
+ L W
Sbjct: 228 PAHLLAGGW 236
>sp|Q5E6T2|PRMC_VIBF1 Release factor glutamine methyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=prmC PE=3 SV=1
Length = 284
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 12/199 (6%)
Query: 129 RIGLDELYGLWKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
+I DE G + +E+R +P Y+VG + L L V IPRP+TE +V++ D
Sbjct: 49 KIVSDEELGNFNALLERRLAGEPIAYIVGYREFWSLPLKVSPTTLIPRPDTERLVEVALD 108
Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245
L + + +DLGTG+GAIA+ IA + + ++I VD A +A NA+ +
Sbjct: 109 HLTPNAQSI-----LDLGTGTGAIALAIASEMPTL-NVIGVDYQDDAVELAKGNAKINHI 162
Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
+ +E RQGSWF + + K +VSNPPYI +D + +V + EP+ AL +G
Sbjct: 163 NN-VEFRQGSWFEPIS-LSDKFDIIVSNPPYIDGNDPHLSEGDV-RFEPQTALVAEQNGF 219
Query: 306 DYLLHLCNGTASMLKPDKW 324
L+H+ L W
Sbjct: 220 SDLIHIMQHGREYLLNGGW 238
>sp|Q4UJU4|RFTRM_RICFE Bifunctional methyltransferase OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=prmC/trmB PE=3 SV=1
Length = 527
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 130 IGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDL------- 182
+ ++ L ++R+ K +P Y++G + + V + V IPR +TE++VD+
Sbjct: 54 VEIEAFEKLLERRL-KHEPIAYIIGIKEFYSREFIVNKHVLIPRADTEVLVDVCVHKSSL 112
Query: 183 --------VSDVLVR----------DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224
+S +L + ND ++LGTGSG IAI + L + ++
Sbjct: 113 RATKRSVAISGILSKIASSTPMASSRNDEYTK--ILELGTGSGCIAISLLCELPN-ARVV 169
Query: 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISG 284
A D++ A VA NA +Y + D I+I +WF L + K +VSNPPYI +D+
Sbjct: 170 ATDISLDAIEVARNNALKYHVTDRIQIIHSNWFENLG--KQKFDVIVSNPPYISTDEKPE 227
Query: 285 LQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPD 322
+ +E HEP +AL DGL + LKP+
Sbjct: 228 MALETLNHEPYIALFAEEDGLQAYRIIAENAKKFLKPN 265
>sp|Q7ULT2|PRMC_RHOBA Release factor glutamine methyltransferase OS=Rhodopirellula
baltica (strain SH1) GN=prmC PE=3 SV=1
Length = 296
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETE-LMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
P LVG + + + V+E V +PRPETE L+++ + + R +D +D+GTGS
Sbjct: 78 PVAQLVGYREFYSISIRVDENVLVPRPETEHLVIEAIDQIKGRLSDRPSPTV-LDIGTGS 136
Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGK 266
GAIA+ IA+ L K + AVD++ A +A +N + L D + + Q F L+ +
Sbjct: 137 GAIAVAIAKSL-PKTQVTAVDISLTALDIAKWNVENLKLSDRVTLLQSDLFDGLEP-DQT 194
Query: 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
+ SNPPYI + L V + EPR AL G DG + + L N + L
Sbjct: 195 FDVICSNPPYISQSEYDELPTTVREFEPRGALLSGPDGTEIIARLLNDSVQRL 247
>sp|Q8G3P4|PRMC_BIFLO Release factor glutamine methyltransferase OS=Bifidobacterium
longum (strain NCC 2705) GN=prmC PE=3 SV=1
Length = 294
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R KR+P QY+ G +R L L V GVFIPRPETE +V D L + +G+ VD
Sbjct: 66 RRAKREPLQYITGHAPFRYLDLKVGPGVFIPRPETETVVQAGLDWLTK--NGMIHPCVVD 123
Query: 202 LGTGSGAIAIG-IARVLGSKGSIIAVDLNPLAAAVAAFN----AQRY---GLQDIIEIRQ 253
L GSGAI + ++ V GS+ + AV+L+P A N A++Y +EI
Sbjct: 124 LCAGSGAIGLSVVSEVPGSQ--VWAVELSPNTAEWTRRNLSETAKKYPSIASNYHLEIAD 181
Query: 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG-VDGLDYLLHLC 312
+ F L ++G + V++NPPY+P DI Q EV +P LAL GG +DG +
Sbjct: 182 ATSFATLAQLDGTVDIVITNPPYVPQTDIPE-QPEVRDWDPELALYGGSMDGTLIPERII 240
Query: 313 NGTASMLKP 321
+LKP
Sbjct: 241 ERACRLLKP 249
>sp|Q8KCD5|PRMC_CHLTE Release factor glutamine methyltransferase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=prmC PE=3 SV=1
Length = 294
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 19/236 (8%)
Query: 100 LNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDE-----------LYGLWKQRIEKRKP 148
+ + E +++P L +L + RL++ LD ++R++ R P
Sbjct: 17 IAFFAEKKIDEPRLSAELLLGHVLGLQRLQLYLDHERPLTLKELEAFRAACRERLQGR-P 75
Query: 149 FQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN-DGLRDGFWVDLGTGSG 207
QY+ G + V+E V IPRPETEL+++ + L D +D+GTGSG
Sbjct: 76 VQYIAGEAFFYGYQFFVDERVLIPRPETELVLEHAMERLAASGLDSADSPSILDVGTGSG 135
Query: 208 AIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF-GKLKD-VE 264
IAI +A R+ G++ + A D++ A VA NA +G+ + I + D V
Sbjct: 136 CIAITLALRLPGAR--VTAADVSADALDVARRNADAHGVSERIRFVEADALSASFADAVG 193
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
G +VSNPPYIP + + LQ EV ++EPRLAL G +Y + S+L+
Sbjct: 194 GPFDLLVSNPPYIPEAEWATLQEEVRRYEPRLALVAPT-GFEYYQSIAVAAPSLLR 248
>sp|Q89DG5|PRMB_BRAJA 50S ribosomal protein L3 glutamine methyltransferase
OS=Bradyrhizobium japonicum (strain USDA 110) GN=prmB
PE=3 SV=1
Length = 319
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 12/194 (6%)
Query: 135 LYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP------ETELMVDLVSDVLV 188
L L QR+ RKP YLV + R L V+E V +PR ++ D + L+
Sbjct: 88 LLDLIHQRVTTRKPAAYLVNKIYMRGLPFYVDERVIVPRSYIGELLDSHFGGDGEAGSLI 147
Query: 189 RDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248
+ +DL TGSG +AI +A ++ AVD++ A VAA N +GL +
Sbjct: 148 DHPTAVER--VLDLCTGSGCLAI-LAAYHFPNATVDAVDISKGALEVAARNVGEHGLDER 204
Query: 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL 308
+ + +G F L D L +++NPPY+ ++ ++ L E + EP+LA DGGVDGLD +
Sbjct: 205 VTLHRGDLFAPLGDNRYDL--IITNPPYVDAEGMAALPPEC-RAEPKLAFDGGVDGLDVV 261
Query: 309 LHLCNGTASMLKPD 322
+ L PD
Sbjct: 262 RRILRDAPEHLTPD 275
>sp|A0R213|PRMC_MYCS2 Release factor glutamine methyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=prmC PE=3
SV=1
Length = 281
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 12/162 (7%)
Query: 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVD-LVSDVLVRDNDGLRDGFWVDLG 203
KR P Q+LVG + L L V GVFIPRPETE +++ V+ L RD VDL
Sbjct: 65 KRIPLQHLVGTAAFGPLTLEVGPGVFIPRPETESLLEWAVAQQLP------RDAVIVDLC 118
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
TG+GA+A+ +A+ + +IAV+ +P A A NA ++ + + L ++
Sbjct: 119 TGTGALALALAQ-HRPQARVIAVEDSPAALEYARCNAAGTSVE--VLAADVTAPDLLPEL 175
Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
+G + VVSNPPYIP + L EV H+P AL GG DG+
Sbjct: 176 DGAVDLVVSNPPYIPEG--AELDPEVADHDPAHALFGGPDGM 215
>sp|Q87DF7|PRMC_XYLFT Release factor glutamine methyltransferase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=prmC PE=3 SV=1
Length = 275
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 12/189 (6%)
Query: 139 WKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
++ +E+R P YL+G + L + V IPR ETE +V+ L D
Sbjct: 51 FQALVEQRARGIPVAYLIGRRGFWTLDVIVSSATLIPRAETETLVEQALQRL----DHAS 106
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
+ DLGTGSGAIA+ IA + ++A D + A +AA NA +GL ++ R+G+
Sbjct: 107 ERRVADLGTGSGAIALAIA-CERPQAQVLATDNSAAALDIAARNASAHGLNHVV-FREGN 164
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W+ L + + +VSNPPYI D Q ++ + EP AL G DGLD L L G
Sbjct: 165 WYEAL--LGERFDLIVSNPPYIAVTDPHLTQGDL-RFEPPSALISGGDGLDALRILAAGA 221
Query: 316 ASMLKPDKW 324
+ L+P W
Sbjct: 222 PAHLRPGGW 230
>sp|Q9PD67|PRMC_XYLFA Release factor glutamine methyltransferase OS=Xylella fastidiosa
(strain 9a5c) GN=prmC PE=3 SV=1
Length = 275
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 12/189 (6%)
Query: 139 WKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
++ +E+R P YL+G + L + V IPR ETE +V+ L D
Sbjct: 51 FQALVEQRARGIPVAYLIGRRGFWTLDVMVSSATLIPRAETETLVEQALQRL----DHAS 106
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
+ DLGTGSGAIA+ IA + ++A D + A +AA NA +GL ++ R+G
Sbjct: 107 ERRVADLGTGSGAIALAIA-CERPQAQVLATDNSAAALDIAARNASAHGLNHVV-FREGD 164
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W+ L + + +VSNPPYI D Q ++ + EP AL G DGLD L L G
Sbjct: 165 WYEAL--LGERFDLIVSNPPYIAVTDPHLTQGDL-RFEPPSALISGGDGLDALRILTAGA 221
Query: 316 ASMLKPDKW 324
+ L+P W
Sbjct: 222 PAYLRPGGW 230
>sp|Q8K9W9|PRMC_BUCAP Release factor glutamine methyltransferase OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=prmC PE=3 SV=1
Length = 275
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 21/207 (10%)
Query: 109 EDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKR----------KPFQYLVGCEHW 158
E+P ++ + + R+ I +++ L K++ +K +P Y++G + +
Sbjct: 18 ENPRYEAEILLSHVLKCTRIAIIINQEIDLSKEQYQKLNNFIYRRSIGEPIAYIIGKKEF 77
Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
L L V IPRP+TE++V+ +L + N R +DLGTGSGAIA+ +A V
Sbjct: 78 WSLSLCVSYKTLIPRPDTEILVE---KILSKVNKNFRSI--LDLGTGSGAIALALASVC- 131
Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
S +II VD + A +A N + L++ +E +WF + + K +VSNPPYI
Sbjct: 132 SHWNIIGVDNSYSALKIAKINGLKLNLKN-VEFFYSNWFSHINE---KFHIIVSNPPYIG 187
Query: 279 SDDISGLQVEVGKHEPRLALDGGVDGL 305
+I L+ ++ +EP AL DGL
Sbjct: 188 IKEIQSLKKDIF-YEPFNALISKKDGL 213
>sp|Q7W022|PRMC_BORPE Release factor glutamine methyltransferase OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=prmC
PE=3 SV=1
Length = 270
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 139 WKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
W+Q +R +P YL+G + ++ V IPRP+TEL+V+ L G
Sbjct: 49 WRQLAARRLAGEPMAYLLGGREFMGHWYALTPDVLIPRPDTELLVETALHWL----QGRA 104
Query: 196 DGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+DLGTGSGAIA+ +A LG + + A DL+ A AVA NAQR G + + G
Sbjct: 105 APRVLDLGTGSGAIAVSVA--LGCPQAEVTATDLSAAALAVAEGNAQRLGAR--VRCLAG 160
Query: 255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314
W+ L + + +VSNPPYI +D Q ++ + EPR AL DGL L + G
Sbjct: 161 DWYEALP-AQDRYDLIVSNPPYIAREDAHLAQGDL-RFEPRGALTDENDGLAALARIAGG 218
Query: 315 TASMLKP 321
L P
Sbjct: 219 APGRLLP 225
>sp|Q10602|PRMC_MYCTU Release factor glutamine methyltransferase OS=Mycobacterium
tuberculosis GN=prmC PE=3 SV=2
Length = 304
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 23/199 (11%)
Query: 133 DELYGLWKQRIE---KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR 189
DE +G ++ + +R P Q+L+G + +VL V GVF+PRPETE ++ + +
Sbjct: 49 DEFFGRYRDIVTARARRVPLQHLIGTVSFGPVVLHVGPGVFVPRPETEAILAWATAQSLP 108
Query: 190 DNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246
VD TGSGA+A+ +A+ LG K II +D + A A NA ++
Sbjct: 109 ARP-----LIVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVE 163
Query: 247 ----DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302
D+ R L +++G++ +VSNPPYIP D + L+ EV +H+P AL GG
Sbjct: 164 LVRADVTTPRL------LPELDGQVDLMVSNPPYIP--DAAVLEPEVAQHDPHHALFGGP 215
Query: 303 DGLDYLLHLCNGTASMLKP 321
DG+ + + L+P
Sbjct: 216 DGMTVISAVVGLAGRWLRP 234
>sp|P45253|PRMC_HAEIN Release factor glutamine methyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=prmC PE=3 SV=1
Length = 292
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 117 LGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176
L F + ++R+ +L L +R+ K +P Y++G + + L L+V +G IPRP+T
Sbjct: 43 LAFDDTEIDEKVRL---KLTALLDRRL-KGEPIAYILGEKEFWSLPLNVSKGTLIPRPDT 98
Query: 177 ELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG-------SIIAVDL 228
E++V+ + + + F + DLGTG+GAIA+ +A L II VDL
Sbjct: 99 EILVEKALQIALEKLEENPPHFRILDLGTGTGAIALALASELAPICQKRHIPLEIIGVDL 158
Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
A+A NA+R L +E Q WF ++ GK +VSNPPYI + D Q +
Sbjct: 159 MSDVVALAQSNAERNQLN--VEFLQSRWFD---NITGKFDLIVSNPPYIDAQDEHLHQGD 213
Query: 289 VGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPD 322
V + EP AL +G L H+ +S L +
Sbjct: 214 V-RFEPLSALVANDEGYADLRHIIELASSYLNSN 246
>sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransferase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=prmC PE=3 SV=1
Length = 276
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 14/194 (7%)
Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
+E + W R +P Y++G + + L L V IPRP+TEL+V+ L D
Sbjct: 51 NERFDDWIARRRNGEPVAYILGHQGFWSLDLEVAPHTLIPRPDTELLVETALATLAADTA 110
Query: 193 GLRDGFWVDLGTGSGAIAIGIA--RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
+ +DLGTG+GAIA+ +A R L ++ AVD A A+A N QR L++ +E
Sbjct: 111 TV-----LDLGTGTGAIALALASERPL---WTVTAVDRVEEAVALAERNRQRLLLEN-VE 161
Query: 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH 310
+R+ WF L ++ +V NPPYIP+ D + +V + EP+ AL G DGLD +
Sbjct: 162 VRRSHWFSALDGRRFRM--IVGNPPYIPASDPHLSEGDV-RFEPKSALVAGSDGLDDIRQ 218
Query: 311 LCNGTASMLKPDKW 324
+ L + W
Sbjct: 219 IVAQAPRHLLDEGW 232
>sp|Q9WYV8|PRMC_THEMA Release factor glutamine methyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=prmC PE=1 SV=1
Length = 282
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 12/168 (7%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+EKR P Y++G + + L VEEGVF+PRPETE +V+L +++ + G++
Sbjct: 70 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 125
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
D+GTGSGAI + +A+ S + A D++ A +A NA+R+G+ D +R+G +
Sbjct: 126 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 183
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307
K+ + ++SNPPY+ S + L +V EP AL GG DGLD+
Sbjct: 184 FKEKFASIEMILSNPPYVKSS--AHLPKDV-LFEPPEALFGGEDGLDF 228
>sp|Q7VXJ6|PRMB_BORPE 50S ribosomal protein L3 glutamine methyltransferase OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=prmB PE=3 SV=1
Length = 298
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 6/185 (3%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG 197
L +R+ +R P YL G R V+ V +PR ++D VRD L+
Sbjct: 75 LIDRRVTERLPAAYLTGEAWLRGHRFHVDRRVIVPRSPIAELLDEGLAPWVRD--PLQVE 132
Query: 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257
+D+ TGSG +AI +A + + AVD++ A VAA N YGLQD + +RQG+ F
Sbjct: 133 RALDMCTGSGCLAI-LAALAFPVAQVDAVDVSSDALEVAARNVAEYGLQDRLTLRQGNLF 191
Query: 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317
L +V NPPY+ + L E +HEP LAL GG DG+D + +
Sbjct: 192 EALP--AAAYDVIVCNPPYVNQASMGALPQEY-RHEPALALAGGADGMDLVRRILAAAPG 248
Query: 318 MLKPD 322
L D
Sbjct: 249 YLSAD 253
>sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member 1 OS=Mus musculus GN=Hemk1
PE=2 SV=2
Length = 340
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
+ EL G R +R P QY++G ++ L L + VFIPRPETE +V+ V + + +
Sbjct: 98 IQELCG----RRLQRMPVQYILGEWDFQGLSLKMVPPVFIPRPETEELVEWVLEEVAQRP 153
Query: 192 DGLR--DG-FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248
+R DG +++G GSGAI + + L K ++AVD A ++ NAQR LQD
Sbjct: 154 HAVRAQDGPLILEVGCGSGAITLSLLSQL-PKSRVVAVDKEEAAVSLTHENAQRLQLQDR 212
Query: 249 IEI------RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302
I I +G L L VVSNPPYI D+ L E+ +E +ALDGG
Sbjct: 213 IRIIHLDITSEGCCTHLLP--WSPLDLVVSNPPYIFRKDMEQLAPEICSYEDLVALDGGD 270
Query: 303 DGLDYLLHLCNGTASML 319
+G+D + H+ +L
Sbjct: 271 EGMDIITHILTLAPQLL 287
>sp|Q1II29|PRMC_KORVE Release factor glutamine methyltransferase OS=Koribacter versatilis
(strain Ellin345) GN=prmC PE=3 SV=1
Length = 280
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW--VDLGT 204
+P QY+ G + + V V IPRPETE +++ V ++ R+ W +D+GT
Sbjct: 68 EPAQYITGHQEFYGRDFLVSPAVLIPRPETEHLIEAVLEL------APREVRWEVLDVGT 121
Query: 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
GSG IA +A+ + + AVD++P A +A NA R L+ +E R ++
Sbjct: 122 GSGCIAATLAKEF-PRMKVTAVDISPEALQIAQANAAR--LEAQVEFRVSDLLSAIEPGR 178
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324
+ +VSNPPY+ + +Q +V EP A+ GG G+D + L LKP W
Sbjct: 179 -QFDMIVSNPPYVGECEADKVQRQVKDFEPHCAVFGGERGMDIIKRLAPQVWEHLKPGGW 237
>sp|P40816|PRMC_SALTY Release factor glutamine methyltransferase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=prmC PE=3 SV=2
Length = 277
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R ++ +P YL G + L L V IPRP+TE +V+ L ++ +D
Sbjct: 61 RRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQALARL-----PVKTCRILD 115
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
LGTG+GAIA+ +A + AVD P A A+A NA+ +++ + I Q WF L
Sbjct: 116 LGTGTGAIALALA-CERPDCEVTAVDRMPDAVALAIRNAEHLAIRN-VRILQSCWFSALS 173
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
+ + +VSNPPYI + D + +V + EPR AL +G+ L H+ + ML P
Sbjct: 174 GQQFDM--IVSNPPYIDAQDPHLSEGDV-RFEPRSALVADENGMADLTHIIDNARQMLTP 230
>sp|Q9Y5R4|HEMK1_HUMAN HemK methyltransferase family member 1 OS=Homo sapiens GN=HEMK1
PE=2 SV=1
Length = 338
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG---FWVD 201
+R P QY++G ++ L L + VFIPRPETE +V+ V + + + + + ++
Sbjct: 106 QRMPVQYILGEWDFQGLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILE 165
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD---IIEIRQGSWFG 258
+G GSGAI++ + L + +IAVD A ++ NAQR LQD II + S
Sbjct: 166 VGCGSGAISLSLLSQL-PQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERS 224
Query: 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318
G + +VSNPPY+ D+ L E+ +E ALDGG +G+D + H+ +
Sbjct: 225 WTHLPWGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRL 284
Query: 319 LK 320
LK
Sbjct: 285 LK 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,676,038
Number of Sequences: 539616
Number of extensions: 5950693
Number of successful extensions: 23405
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 22542
Number of HSP's gapped (non-prelim): 890
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)