Query 020573
Match_columns 324
No_of_seqs 416 out of 2778
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2904 Predicted methyltransf 100.0 1.1E-45 2.3E-50 333.5 22.7 250 56-324 26-280 (328)
2 COG2890 HemK Methylase of poly 100.0 3.2E-43 7E-48 328.3 20.8 232 65-324 2-233 (280)
3 PRK01544 bifunctional N5-gluta 100.0 2.2E-42 4.8E-47 346.6 21.4 240 66-324 5-264 (506)
4 TIGR00536 hemK_fam HemK family 100.0 1.1E-41 2.4E-46 319.1 20.9 237 66-324 3-239 (284)
5 PRK11805 N5-glutamine S-adenos 100.0 7E-41 1.5E-45 316.6 22.5 248 58-324 8-258 (307)
6 TIGR03533 L3_gln_methyl protei 100.0 9.7E-41 2.1E-45 312.7 21.7 242 65-324 3-246 (284)
7 PRK14966 unknown domain/N5-glu 100.0 1.3E-39 2.9E-44 315.2 20.6 213 97-324 164-376 (423)
8 TIGR03704 PrmC_rel_meth putati 100.0 1.4E-37 3.1E-42 286.4 19.2 197 97-324 14-211 (251)
9 PRK09328 N5-glutamine S-adenos 100.0 2.1E-35 4.5E-40 274.1 20.8 231 65-324 3-233 (275)
10 PLN02672 methionine S-methyltr 100.0 3.3E-31 7.1E-36 281.1 19.0 168 153-324 79-273 (1082)
11 TIGR03534 RF_mod_PrmC protein- 100.0 1E-30 2.2E-35 239.0 18.4 212 99-324 1-212 (251)
12 PF05175 MTS: Methyltransferas 99.9 1E-22 2.2E-27 177.0 14.2 131 161-324 2-135 (170)
13 PRK14967 putative methyltransf 99.9 5.3E-21 1.2E-25 173.1 15.3 150 159-324 5-154 (223)
14 COG4123 Predicted O-methyltran 99.8 5.1E-20 1.1E-24 167.6 11.0 146 160-324 17-165 (248)
15 TIGR00537 hemK_rel_arch HemK-r 99.8 4.1E-19 8.8E-24 155.2 14.0 135 169-324 1-135 (179)
16 KOG3191 Predicted N6-DNA-methy 99.8 4.7E-19 1E-23 152.3 12.1 147 168-324 17-163 (209)
17 PRK15001 SAM-dependent 23S rib 99.8 3.7E-18 8E-23 165.3 14.8 133 160-324 198-335 (378)
18 PF13659 Methyltransf_26: Meth 99.8 1.1E-18 2.4E-23 141.2 8.9 108 197-324 2-110 (117)
19 COG2813 RsmC 16S RNA G1207 met 99.8 3.9E-18 8.5E-23 158.4 13.8 130 160-323 128-260 (300)
20 PRK14968 putative methyltransf 99.8 6.6E-18 1.4E-22 147.4 14.1 141 166-324 2-143 (188)
21 PRK11727 23S rRNA mA1618 methy 99.8 4.1E-18 8.9E-23 161.6 13.7 163 159-324 72-262 (321)
22 PRK10909 rsmD 16S rRNA m(2)G96 99.7 4.8E-17 1E-21 144.9 13.6 125 146-278 9-133 (199)
23 PRK09489 rsmC 16S ribosomal RN 99.7 5.5E-17 1.2E-21 155.8 14.5 130 160-324 166-298 (342)
24 PRK13168 rumA 23S rRNA m(5)U19 99.7 4.8E-16 1E-20 154.3 15.6 126 145-278 241-379 (443)
25 PF12847 Methyltransf_18: Meth 99.7 8.5E-16 1.8E-20 123.1 11.6 105 196-324 2-106 (112)
26 COG2264 PrmA Ribosomal protein 99.6 1.9E-15 4.2E-20 141.1 14.0 154 132-324 95-258 (300)
27 PHA03411 putative methyltransf 99.6 1.3E-15 2.9E-20 140.7 12.5 112 196-324 65-178 (279)
28 PHA03412 putative methyltransf 99.6 6.7E-16 1.4E-20 139.8 10.3 105 196-323 50-157 (241)
29 PRK14902 16S rRNA methyltransf 99.6 1.4E-15 3.1E-20 151.0 13.6 142 167-324 229-374 (444)
30 PLN02336 phosphoethanolamine N 99.6 1.5E-15 3.3E-20 151.8 10.4 149 127-324 212-364 (475)
31 TIGR01177 conserved hypothetic 99.6 6.6E-15 1.4E-19 140.8 14.1 125 174-324 165-289 (329)
32 PRK15128 23S rRNA m(5)C1962 me 99.6 3.6E-15 7.9E-20 145.7 12.3 111 195-324 220-334 (396)
33 PF06325 PrmA: Ribosomal prote 99.6 6.2E-15 1.3E-19 138.5 11.5 130 131-273 93-232 (295)
34 PRK11783 rlmL 23S rRNA m(2)G24 99.6 5E-15 1.1E-19 154.6 11.6 113 195-324 538-651 (702)
35 TIGR00446 nop2p NOL1/NOP2/sun 99.6 1.8E-14 3.9E-19 133.8 12.9 141 167-324 50-194 (264)
36 TIGR00138 gidB 16S rRNA methyl 99.6 1.4E-14 3.1E-19 127.3 11.6 96 195-324 42-137 (181)
37 PRK03522 rumB 23S rRNA methylu 99.6 2E-14 4.4E-19 136.7 13.1 112 158-277 138-251 (315)
38 PRK14903 16S rRNA methyltransf 99.6 1.8E-14 3.9E-19 142.5 13.0 124 195-324 237-361 (431)
39 PF13847 Methyltransf_31: Meth 99.6 1.5E-14 3.3E-19 122.9 10.8 102 195-324 3-105 (152)
40 TIGR00406 prmA ribosomal prote 99.6 7.6E-14 1.7E-18 131.2 16.5 152 132-324 92-254 (288)
41 PRK00107 gidB 16S rRNA methylt 99.6 3.1E-14 6.8E-19 125.7 13.0 95 196-324 46-140 (187)
42 PRK14904 16S rRNA methyltransf 99.6 4E-14 8.8E-19 140.7 13.3 143 164-324 226-372 (445)
43 TIGR02085 meth_trns_rumB 23S r 99.5 4.3E-14 9.3E-19 137.5 12.7 112 158-277 198-311 (374)
44 PF01170 UPF0020: Putative RNA 99.5 6.5E-14 1.4E-18 122.9 12.0 126 172-321 9-143 (179)
45 PRK10901 16S rRNA methyltransf 99.5 7.2E-14 1.6E-18 138.2 13.7 119 195-324 244-367 (427)
46 TIGR02469 CbiT precorrin-6Y C5 99.5 1.9E-13 4.2E-18 110.8 13.8 99 195-324 19-117 (124)
47 PRK00377 cbiT cobalt-precorrin 99.5 9.5E-14 2.1E-18 123.4 12.2 104 192-324 37-140 (198)
48 PRK13944 protein-L-isoaspartat 99.5 1.9E-13 4.1E-18 122.3 14.1 93 178-275 59-151 (205)
49 PRK00517 prmA ribosomal protei 99.5 2.6E-13 5.6E-18 125.0 15.1 148 131-324 52-208 (250)
50 PF03602 Cons_hypoth95: Conser 99.5 2E-14 4.2E-19 126.6 7.3 117 157-278 7-126 (183)
51 TIGR00080 pimt protein-L-isoas 99.5 1.8E-13 3.8E-18 123.2 13.5 92 178-275 64-155 (215)
52 COG2226 UbiE Methylase involve 99.5 8.8E-14 1.9E-18 126.7 11.2 101 195-324 51-151 (238)
53 TIGR00563 rsmB ribosomal RNA s 99.5 1.7E-13 3.7E-18 135.5 13.4 121 195-324 238-363 (426)
54 PLN02781 Probable caffeoyl-CoA 99.5 1.1E-13 2.3E-18 126.5 10.5 114 175-324 55-173 (234)
55 PF01209 Ubie_methyltran: ubiE 99.5 7.9E-14 1.7E-18 127.2 9.5 102 195-324 47-148 (233)
56 COG2263 Predicted RNA methylas 99.5 2.3E-13 4.9E-18 118.4 11.6 96 171-279 26-121 (198)
57 TIGR00479 rumA 23S rRNA (uraci 99.5 1.9E-13 4.1E-18 135.3 12.7 123 147-277 242-373 (431)
58 PRK14901 16S rRNA methyltransf 99.5 3.6E-13 7.7E-18 133.5 13.4 121 195-324 252-379 (434)
59 PLN02244 tocopherol O-methyltr 99.5 4.3E-13 9.4E-18 128.9 13.6 102 194-324 117-218 (340)
60 TIGR00095 RNA methyltransferas 99.5 2.1E-13 4.6E-18 120.6 10.4 116 157-278 15-133 (189)
61 PRK08287 cobalt-precorrin-6Y C 99.5 7.2E-13 1.6E-17 116.5 13.7 96 195-324 31-126 (187)
62 PF05971 Methyltransf_10: Prot 99.5 5.9E-13 1.3E-17 124.7 13.6 159 159-318 63-246 (299)
63 TIGR02752 MenG_heptapren 2-hep 99.5 1.6E-12 3.5E-17 117.6 14.5 102 195-324 45-146 (231)
64 PRK00121 trmB tRNA (guanine-N( 99.5 4.4E-13 9.5E-18 119.7 10.6 108 195-324 40-151 (202)
65 COG2230 Cfa Cyclopropane fatty 99.4 7.3E-13 1.6E-17 122.9 12.2 103 192-324 69-171 (283)
66 PLN02233 ubiquinone biosynthes 99.4 1.5E-12 3.2E-17 120.8 14.1 103 195-324 73-177 (261)
67 COG0742 N6-adenine-specific me 99.4 2E-12 4.4E-17 113.1 13.8 120 152-277 4-125 (187)
68 COG2227 UbiG 2-polyprenyl-3-me 99.4 2E-13 4.3E-18 123.1 7.2 99 194-324 58-156 (243)
69 PRK05031 tRNA (uracil-5-)-meth 99.4 6.6E-13 1.4E-17 128.7 11.3 108 161-277 175-299 (362)
70 PRK11036 putative S-adenosyl-L 99.4 9E-13 2E-17 121.6 11.5 101 195-324 44-144 (255)
71 PF13649 Methyltransf_25: Meth 99.4 3.2E-13 7E-18 106.8 7.3 99 199-323 1-101 (101)
72 PF02353 CMAS: Mycolic acid cy 99.4 9.9E-13 2.1E-17 122.7 11.5 103 192-324 59-161 (273)
73 PRK13942 protein-L-isoaspartat 99.4 1.8E-12 3.9E-17 116.6 12.6 105 160-273 48-152 (212)
74 PF02384 N6_Mtase: N-6 DNA Met 99.4 6.8E-13 1.5E-17 125.6 10.1 142 169-324 28-178 (311)
75 TIGR00477 tehB tellurite resis 99.4 2.3E-12 4.9E-17 114.4 12.5 99 195-324 30-128 (195)
76 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.2E-12 2.6E-17 116.0 10.8 107 196-324 17-127 (194)
77 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.8E-12 6.1E-17 117.9 12.7 103 195-324 56-159 (247)
78 PRK07402 precorrin-6B methylas 99.4 2.9E-12 6.2E-17 113.6 12.3 98 195-324 40-137 (196)
79 PRK11207 tellurite resistance 99.4 3.3E-12 7.1E-17 113.6 12.4 100 195-324 30-129 (197)
80 COG2242 CobL Precorrin-6B meth 99.4 5E-12 1.1E-16 110.2 13.2 100 192-324 31-130 (187)
81 smart00828 PKS_MT Methyltransf 99.4 1.9E-12 4.1E-17 116.6 10.6 98 198-324 2-99 (224)
82 PF10672 Methyltrans_SAM: S-ad 99.4 4E-12 8.7E-17 118.9 12.7 108 195-324 123-233 (286)
83 PLN02396 hexaprenyldihydroxybe 99.4 1.6E-12 3.4E-17 124.0 9.8 100 195-324 131-230 (322)
84 PRK11873 arsM arsenite S-adeno 99.4 4.1E-12 9E-17 118.0 12.3 102 195-324 77-178 (272)
85 KOG2187 tRNA uracil-5-methyltr 99.4 1.4E-12 3E-17 128.1 9.1 124 146-277 332-466 (534)
86 PLN02476 O-methyltransferase 99.4 6.1E-12 1.3E-16 117.2 12.8 116 173-324 103-223 (278)
87 PRK14103 trans-aconitate 2-met 99.4 3E-12 6.5E-17 118.0 10.6 94 194-324 28-121 (255)
88 COG2265 TrmA SAM-dependent met 99.4 3E-12 6.4E-17 126.3 11.0 111 160-278 260-374 (432)
89 TIGR02987 met_A_Alw26 type II 99.4 4.3E-12 9.4E-17 128.6 12.3 112 167-280 4-126 (524)
90 PF05958 tRNA_U5-meth_tr: tRNA 99.4 2.2E-12 4.9E-17 124.5 9.5 109 160-277 164-289 (352)
91 COG1041 Predicted DNA modifica 99.4 5E-12 1.1E-16 119.9 11.4 109 194-324 196-305 (347)
92 PF08241 Methyltransf_11: Meth 99.3 2.6E-12 5.6E-17 98.8 7.3 92 200-324 1-92 (95)
93 PF08242 Methyltransf_12: Meth 99.3 2E-13 4.2E-18 107.4 1.1 97 200-324 1-98 (99)
94 PRK11783 rlmL 23S rRNA m(2)G24 99.3 4.7E-12 1E-16 132.4 11.7 137 172-311 170-358 (702)
95 PRK12335 tellurite resistance 99.3 8.5E-12 1.9E-16 117.2 12.3 99 195-324 120-218 (287)
96 PLN02490 MPBQ/MSBQ methyltrans 99.3 9.4E-12 2E-16 119.3 12.6 121 169-324 90-210 (340)
97 TIGR00740 methyltransferase, p 99.3 1.6E-11 3.4E-16 112.1 13.6 103 195-324 53-156 (239)
98 TIGR02143 trmA_only tRNA (urac 99.3 6.9E-12 1.5E-16 121.2 11.6 107 161-276 166-289 (353)
99 PF02475 Met_10: Met-10+ like- 99.3 5E-12 1.1E-16 112.6 9.5 107 160-277 72-180 (200)
100 PRK01683 trans-aconitate 2-met 99.3 7.6E-12 1.6E-16 115.3 10.9 96 194-324 30-125 (258)
101 COG1092 Predicted SAM-dependen 99.3 2.8E-12 6E-17 124.6 8.2 110 195-324 217-331 (393)
102 TIGR03587 Pse_Me-ase pseudamin 99.3 8E-12 1.7E-16 111.8 10.6 110 152-273 2-112 (204)
103 PRK06922 hypothetical protein; 99.3 1.2E-11 2.6E-16 126.0 13.0 114 195-324 418-532 (677)
104 COG4122 Predicted O-methyltran 99.3 1.3E-11 2.8E-16 111.1 11.8 115 174-324 45-161 (219)
105 smart00650 rADc Ribosomal RNA 99.3 7.5E-12 1.6E-16 108.4 9.9 77 195-278 13-89 (169)
106 PF09445 Methyltransf_15: RNA 99.3 3.2E-12 6.8E-17 110.1 7.0 78 198-278 2-81 (163)
107 PRK00312 pcm protein-L-isoaspa 99.3 2.4E-11 5.1E-16 109.0 13.0 77 194-275 77-153 (212)
108 PF01596 Methyltransf_3: O-met 99.3 7.4E-12 1.6E-16 112.1 9.5 115 174-324 31-150 (205)
109 PRK04457 spermidine synthase; 99.3 7.1E-12 1.5E-16 116.4 9.7 107 195-324 66-172 (262)
110 PRK08317 hypothetical protein; 99.3 3.8E-11 8.1E-16 108.0 13.1 118 174-324 2-119 (241)
111 COG2519 GCD14 tRNA(1-methylade 99.3 4.1E-11 8.8E-16 109.0 12.2 100 192-324 91-190 (256)
112 PTZ00098 phosphoethanolamine N 99.3 5.2E-11 1.1E-15 110.6 13.3 101 194-324 51-151 (263)
113 PRK15068 tRNA mo(5)U34 methylt 99.3 5E-11 1.1E-15 113.8 13.0 101 194-324 121-221 (322)
114 TIGR02716 C20_methyl_CrtF C-20 99.3 4.6E-11 9.9E-16 113.1 12.6 102 194-324 148-249 (306)
115 PLN02585 magnesium protoporphy 99.3 4.7E-11 1E-15 113.5 12.1 108 159-274 109-220 (315)
116 PRK00811 spermidine synthase; 99.3 4.3E-11 9.3E-16 112.3 11.4 105 195-324 76-186 (283)
117 PF03848 TehB: Tellurite resis 99.2 5.1E-11 1.1E-15 105.3 11.0 100 194-324 29-128 (192)
118 PTZ00338 dimethyladenosine tra 99.2 4.6E-11 9.9E-16 112.7 11.2 92 179-280 24-115 (294)
119 PRK14121 tRNA (guanine-N(7)-)- 99.2 6.9E-11 1.5E-15 114.7 12.6 107 196-324 123-230 (390)
120 KOG1270 Methyltransferases [Co 99.2 1.3E-11 2.9E-16 112.3 7.2 96 196-324 90-190 (282)
121 TIGR02021 BchM-ChlM magnesium 99.2 1.3E-10 2.8E-15 104.6 13.3 89 176-273 38-126 (219)
122 COG0116 Predicted N6-adenine-s 99.2 4.7E-11 1E-15 114.7 10.7 99 173-277 173-310 (381)
123 PRK04338 N(2),N(2)-dimethylgua 99.2 7E-11 1.5E-15 115.2 11.8 77 196-275 58-134 (382)
124 KOG1271 Methyltransferases [Ge 99.2 6.6E-11 1.4E-15 102.3 10.1 94 176-272 48-142 (227)
125 PF08704 GCD14: tRNA methyltra 99.2 1.1E-10 2.5E-15 107.1 12.3 84 192-275 37-122 (247)
126 PRK10258 biotin biosynthesis p 99.2 4.8E-11 1E-15 109.5 9.9 94 195-324 42-135 (251)
127 PRK04266 fibrillarin; Provisio 99.2 2.9E-10 6.3E-15 103.3 14.7 100 193-324 70-171 (226)
128 PF01135 PCMT: Protein-L-isoas 99.2 1.5E-10 3.4E-15 103.9 12.7 110 156-274 40-149 (209)
129 PLN03075 nicotianamine synthas 99.2 1.4E-10 3E-15 108.8 12.7 104 195-324 123-228 (296)
130 KOG1540 Ubiquinone biosynthesi 99.2 1.4E-10 3E-15 105.2 11.9 104 193-324 98-209 (296)
131 PRK13943 protein-L-isoaspartat 99.2 1.7E-10 3.8E-15 109.9 13.3 78 194-273 79-156 (322)
132 PRK11188 rrmJ 23S rRNA methylt 99.2 7E-11 1.5E-15 106.1 9.8 102 195-324 51-160 (209)
133 TIGR02072 BioC biotin biosynth 99.2 1.3E-10 2.8E-15 104.7 11.3 97 195-324 34-130 (240)
134 PRK00216 ubiE ubiquinone/menaq 99.2 2E-10 4.3E-15 103.6 12.5 103 195-324 51-153 (239)
135 PRK11933 yebU rRNA (cytosine-C 99.2 1.8E-10 3.9E-15 114.9 13.1 121 195-324 113-237 (470)
136 PLN02589 caffeoyl-CoA O-methyl 99.2 1.4E-10 3E-15 106.7 11.3 116 173-324 64-185 (247)
137 PRK11705 cyclopropane fatty ac 99.2 2E-10 4.3E-15 112.2 13.1 98 193-324 165-262 (383)
138 PRK14896 ksgA 16S ribosomal RN 99.2 1.2E-10 2.6E-15 107.8 11.0 76 195-279 29-104 (258)
139 PRK00274 ksgA 16S ribosomal RN 99.2 7.8E-11 1.7E-15 109.9 9.8 78 195-280 42-119 (272)
140 KOG3420 Predicted RNA methylas 99.2 5.2E-11 1.1E-15 99.4 7.6 84 192-280 45-128 (185)
141 TIGR00452 methyltransferase, p 99.2 3.1E-10 6.8E-15 107.8 13.2 103 192-324 118-220 (314)
142 smart00138 MeTrc Methyltransfe 99.2 1.7E-10 3.6E-15 107.3 10.6 123 177-324 81-237 (264)
143 cd02440 AdoMet_MTases S-adenos 99.2 3.3E-10 7.1E-15 86.7 10.3 99 198-324 1-99 (107)
144 PRK03612 spermidine synthase; 99.2 2.7E-10 5.9E-15 115.4 12.5 108 195-324 297-410 (521)
145 PF05401 NodS: Nodulation prot 99.1 1.1E-10 2.3E-15 102.8 8.0 98 196-324 44-141 (201)
146 TIGR03840 TMPT_Se_Te thiopurin 99.1 4.6E-10 1E-14 101.1 12.2 103 195-324 34-147 (213)
147 COG4106 Tam Trans-aconitate me 99.1 1.4E-10 3E-15 102.9 8.2 95 195-324 30-124 (257)
148 PRK07580 Mg-protoporphyrin IX 99.1 5.7E-10 1.2E-14 100.6 12.2 90 178-275 47-136 (230)
149 PLN02366 spermidine synthase 99.1 1.5E-09 3.2E-14 103.1 15.0 154 146-324 43-201 (308)
150 TIGR00438 rrmJ cell division p 99.1 6.1E-10 1.3E-14 98.0 11.1 102 194-324 31-141 (188)
151 TIGR03438 probable methyltrans 99.1 8.3E-10 1.8E-14 104.5 12.8 124 173-324 44-172 (301)
152 PRK01581 speE spermidine synth 99.1 1.1E-09 2.3E-14 105.3 13.5 155 145-324 103-263 (374)
153 COG2520 Predicted methyltransf 99.1 4.1E-10 8.8E-15 107.5 10.5 104 163-277 164-267 (341)
154 TIGR00417 speE spermidine synt 99.1 7.4E-10 1.6E-14 103.2 11.8 107 195-324 72-181 (270)
155 PRK13255 thiopurine S-methyltr 99.1 9E-10 1.9E-14 99.6 11.9 100 195-324 37-150 (218)
156 PRK11088 rrmA 23S rRNA methylt 99.1 7.6E-10 1.6E-14 103.1 11.5 71 196-273 86-158 (272)
157 COG2518 Pcm Protein-L-isoaspar 99.1 1.8E-09 3.9E-14 96.1 12.4 104 158-273 42-145 (209)
158 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.7E-09 3.7E-14 96.5 12.3 100 195-324 39-138 (223)
159 TIGR00308 TRM1 tRNA(guanine-26 99.1 1.2E-09 2.7E-14 106.1 11.5 78 197-275 46-123 (374)
160 PRK05134 bifunctional 3-demeth 99.0 1.9E-09 4.2E-14 97.6 11.8 100 194-324 47-146 (233)
161 TIGR01983 UbiG ubiquinone bios 99.0 2.6E-09 5.7E-14 95.9 12.5 100 195-324 45-144 (224)
162 PLN02336 phosphoethanolamine N 99.0 1.4E-09 3E-14 109.0 11.7 100 195-324 37-137 (475)
163 KOG2730 Methylase [General fun 99.0 1.1E-09 2.3E-14 97.4 7.7 99 172-280 78-179 (263)
164 PTZ00146 fibrillarin; Provisio 99.0 4.6E-09 9.9E-14 98.4 12.1 116 177-324 115-232 (293)
165 COG0286 HsdM Type I restrictio 99.0 2.6E-09 5.7E-14 107.4 11.2 147 167-323 166-320 (489)
166 PRK05785 hypothetical protein; 99.0 1.9E-09 4.1E-14 97.9 9.1 67 196-274 52-118 (226)
167 TIGR00755 ksgA dimethyladenosi 99.0 2.9E-09 6.2E-14 98.2 10.2 77 194-279 28-107 (253)
168 PRK06202 hypothetical protein; 99.0 2.2E-09 4.8E-14 97.5 8.6 76 195-275 60-138 (232)
169 PF13489 Methyltransf_23: Meth 98.9 3.4E-09 7.3E-14 89.5 7.9 90 194-324 21-110 (161)
170 PF05185 PRMT5: PRMT5 arginine 98.9 6.3E-09 1.4E-13 103.4 10.7 103 196-324 187-292 (448)
171 PF10294 Methyltransf_16: Puta 98.9 8.5E-09 1.8E-13 89.9 9.8 121 175-323 23-150 (173)
172 KOG1499 Protein arginine N-met 98.9 6.8E-09 1.5E-13 98.3 9.7 76 193-272 58-133 (346)
173 COG0144 Sun tRNA and rRNA cyto 98.9 2.3E-08 5.1E-13 96.7 13.4 144 165-324 133-283 (355)
174 KOG1541 Predicted protein carb 98.8 1E-08 2.2E-13 91.4 8.3 115 179-323 36-154 (270)
175 PF02390 Methyltransf_4: Putat 98.8 1.7E-08 3.6E-13 89.8 8.8 105 198-324 20-128 (195)
176 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 1.7E-08 3.6E-13 94.9 9.1 142 167-324 64-214 (283)
177 KOG1663 O-methyltransferase [S 98.8 5.3E-08 1.1E-12 87.4 11.7 115 174-324 59-178 (237)
178 COG3129 Predicted SAM-dependen 98.8 1.7E-08 3.8E-13 90.4 8.5 117 163-280 43-167 (292)
179 PF07021 MetW: Methionine bios 98.8 1.7E-08 3.8E-13 88.7 7.7 69 195-273 13-82 (193)
180 TIGR02081 metW methionine bios 98.8 2.5E-08 5.5E-13 88.1 8.5 72 196-277 14-86 (194)
181 PLN02823 spermine synthase 98.8 9E-08 1.9E-12 91.9 12.8 79 195-274 103-184 (336)
182 PRK04148 hypothetical protein; 98.8 4.4E-08 9.5E-13 81.7 9.1 70 195-275 16-87 (134)
183 PRK13256 thiopurine S-methyltr 98.8 5.5E-08 1.2E-12 88.3 10.5 103 195-324 43-158 (226)
184 PF05724 TPMT: Thiopurine S-me 98.7 2E-08 4.4E-13 90.8 7.3 103 195-324 37-150 (218)
185 PRK00050 16S rRNA m(4)C1402 me 98.7 3.3E-08 7.1E-13 93.2 8.4 95 178-279 6-103 (296)
186 KOG1500 Protein arginine N-met 98.7 7.8E-08 1.7E-12 90.5 10.0 80 190-274 172-251 (517)
187 COG4976 Predicted methyltransf 98.7 7.5E-09 1.6E-13 92.7 1.7 94 196-324 126-220 (287)
188 PF00891 Methyltransf_2: O-met 98.6 2.2E-07 4.9E-12 84.7 11.1 92 195-323 100-193 (241)
189 COG0030 KsgA Dimethyladenosine 98.6 1.8E-07 4E-12 86.2 10.4 81 194-280 29-109 (259)
190 KOG2899 Predicted methyltransf 98.6 1.5E-07 3.2E-12 85.1 9.2 49 194-243 57-105 (288)
191 PRK10742 putative methyltransf 98.6 3.2E-07 7E-12 83.9 11.5 81 198-281 91-179 (250)
192 COG0220 Predicted S-adenosylme 98.6 1.5E-07 3.2E-12 85.5 9.3 106 197-324 50-159 (227)
193 PF08003 Methyltransf_9: Prote 98.6 3.2E-07 6.8E-12 86.0 10.7 102 192-323 112-213 (315)
194 KOG0820 Ribosomal RNA adenine 98.6 2.8E-07 6E-12 84.6 9.8 83 192-280 55-137 (315)
195 PF02527 GidB: rRNA small subu 98.6 5.1E-07 1.1E-11 79.6 10.7 94 175-272 27-121 (184)
196 COG2521 Predicted archaeal met 98.6 3.8E-08 8.3E-13 88.4 3.2 106 194-324 133-240 (287)
197 KOG3010 Methyltransferase [Gen 98.6 6.2E-08 1.3E-12 87.5 4.5 95 198-323 36-130 (261)
198 KOG4300 Predicted methyltransf 98.5 3.1E-07 6.7E-12 81.3 7.7 100 196-324 77-177 (252)
199 COG0421 SpeE Spermidine syntha 98.5 1.4E-06 3E-11 81.7 11.7 104 196-324 77-185 (282)
200 PF01564 Spermine_synth: Sperm 98.5 4.3E-07 9.3E-12 83.6 7.3 107 195-324 76-186 (246)
201 KOG2912 Predicted DNA methylas 98.4 7.8E-07 1.7E-11 83.2 8.1 141 160-302 65-216 (419)
202 PF04816 DUF633: Family of unk 98.4 2.3E-06 4.9E-11 76.7 10.6 72 199-272 1-72 (205)
203 COG0357 GidB Predicted S-adeno 98.4 2.4E-06 5.2E-11 76.9 10.8 97 172-272 43-141 (215)
204 PF00398 RrnaAD: Ribosomal RNA 98.4 2.5E-06 5.5E-11 79.1 10.0 91 178-278 17-109 (262)
205 KOG2915 tRNA(1-methyladenosine 98.3 7.1E-06 1.5E-10 75.5 11.6 84 192-275 102-186 (314)
206 KOG2671 Putative RNA methylase 98.3 7.3E-07 1.6E-11 84.2 5.3 125 194-324 207-349 (421)
207 PF03291 Pox_MCEL: mRNA cappin 98.3 2.9E-06 6.4E-11 81.3 9.5 106 195-324 62-181 (331)
208 PF01861 DUF43: Protein of unk 98.3 1.6E-05 3.4E-10 72.4 13.6 82 192-277 41-123 (243)
209 PF06080 DUF938: Protein of un 98.2 1.3E-05 2.9E-10 71.4 11.3 102 198-324 28-136 (204)
210 COG4076 Predicted RNA methylas 98.2 2.2E-06 4.8E-11 74.9 6.0 69 197-272 34-102 (252)
211 PRK01544 bifunctional N5-gluta 98.2 5.2E-06 1.1E-10 84.1 9.3 107 196-324 348-457 (506)
212 PRK00536 speE spermidine synth 98.2 3.7E-05 8E-10 71.4 14.1 138 146-324 25-166 (262)
213 KOG1661 Protein-L-isoaspartate 98.2 5.5E-06 1.2E-10 73.6 8.0 78 194-272 81-168 (237)
214 KOG2361 Predicted methyltransf 98.2 1.6E-06 3.5E-11 78.5 4.7 135 159-324 39-178 (264)
215 PF13679 Methyltransf_32: Meth 98.2 1.4E-05 2.9E-10 67.3 10.0 95 176-272 6-105 (141)
216 PF12147 Methyltransf_20: Puta 98.2 3.9E-05 8.5E-10 71.5 13.7 106 195-324 135-244 (311)
217 PRK10611 chemotaxis methyltran 98.2 3.9E-06 8.6E-11 78.9 6.9 105 196-324 116-257 (287)
218 PF11599 AviRa: RRNA methyltra 98.1 2.7E-05 5.7E-10 69.6 10.4 108 195-319 51-204 (246)
219 COG1352 CheR Methylase of chem 98.1 2.3E-05 5E-10 72.9 10.5 122 177-324 79-236 (268)
220 TIGR01444 fkbM_fam methyltrans 98.1 1.3E-05 2.8E-10 66.8 8.0 59 198-258 1-59 (143)
221 KOG1975 mRNA cap methyltransfe 98.1 9.9E-06 2.1E-10 76.2 7.9 105 196-324 118-232 (389)
222 PF01739 CheR: CheR methyltran 98.1 1.2E-05 2.6E-10 71.5 8.1 121 177-324 13-170 (196)
223 COG3963 Phospholipid N-methylt 98.1 4.5E-05 9.7E-10 65.6 10.9 116 174-323 31-150 (194)
224 PLN02232 ubiquinone biosynthes 98.1 6.6E-06 1.4E-10 70.7 5.7 74 224-324 1-76 (160)
225 TIGR00497 hsdM type I restrict 98.0 3.1E-05 6.7E-10 78.4 11.0 108 165-278 193-305 (501)
226 PF06962 rRNA_methylase: Putat 98.0 1.6E-05 3.4E-10 66.9 7.2 86 222-324 1-87 (140)
227 TIGR00478 tly hemolysin TlyA f 98.0 1.8E-05 4E-10 72.0 8.2 40 194-235 74-113 (228)
228 PF05219 DREV: DREV methyltran 98.0 3.9E-05 8.6E-10 70.5 9.7 89 195-324 94-183 (265)
229 COG2384 Predicted SAM-dependen 98.0 6.1E-05 1.3E-09 67.6 10.5 75 196-272 17-91 (226)
230 KOG1122 tRNA and rRNA cytosine 98.0 6.2E-05 1.3E-09 73.1 11.3 120 192-324 238-366 (460)
231 PF13578 Methyltransf_24: Meth 98.0 2.5E-06 5.3E-11 67.8 1.5 97 200-324 1-100 (106)
232 COG3897 Predicted methyltransf 97.9 1.7E-05 3.6E-10 69.9 5.8 73 192-272 76-148 (218)
233 TIGR00006 S-adenosyl-methyltra 97.9 4.3E-05 9.3E-10 72.4 8.8 92 178-276 7-102 (305)
234 PF02005 TRM: N2,N2-dimethylgu 97.9 2.3E-05 5E-10 76.5 6.6 81 196-277 50-131 (377)
235 COG4262 Predicted spermidine s 97.8 0.00014 3.1E-09 69.5 10.9 150 147-324 243-402 (508)
236 TIGR03439 methyl_EasF probable 97.8 0.00016 3.4E-09 69.1 11.0 86 173-261 57-146 (319)
237 PF08123 DOT1: Histone methyla 97.8 6.9E-05 1.5E-09 67.2 7.5 80 193-273 40-129 (205)
238 PF01728 FtsJ: FtsJ-like methy 97.8 2.7E-05 5.7E-10 67.9 4.7 100 196-323 24-133 (181)
239 COG1867 TRM1 N2,N2-dimethylgua 97.8 0.00012 2.6E-09 70.3 9.0 77 196-274 53-129 (380)
240 PF03059 NAS: Nicotianamine sy 97.7 0.0003 6.5E-09 65.7 10.9 76 196-272 121-198 (276)
241 KOG1709 Guanidinoacetate methy 97.6 0.00061 1.3E-08 61.0 10.0 100 195-324 101-201 (271)
242 COG0293 FtsJ 23S rRNA methylas 97.6 0.00068 1.5E-08 60.5 10.3 102 195-324 45-154 (205)
243 PF05148 Methyltransf_8: Hypot 97.4 0.0003 6.6E-09 62.8 6.4 94 180-324 60-153 (219)
244 PF09243 Rsm22: Mitochondrial 97.4 0.00082 1.8E-08 62.9 9.6 52 192-243 30-81 (274)
245 PF07942 N2227: N2227-like pro 97.4 0.0018 3.8E-08 60.5 11.5 101 195-324 56-197 (270)
246 cd00315 Cyt_C5_DNA_methylase C 97.4 0.00031 6.8E-09 65.7 6.4 74 198-280 2-76 (275)
247 PF01269 Fibrillarin: Fibrilla 97.4 0.0018 3.8E-08 58.5 10.8 117 176-324 55-173 (229)
248 PF05891 Methyltransf_PK: AdoM 97.3 0.00018 3.9E-09 64.7 3.6 102 195-324 55-156 (218)
249 COG0500 SmtA SAM-dependent met 97.2 0.0051 1.1E-07 48.6 10.8 71 199-272 52-125 (257)
250 COG1568 Predicted methyltransf 97.2 0.0014 2.9E-08 60.9 7.8 83 192-277 149-232 (354)
251 COG0275 Predicted S-adenosylme 97.2 0.0022 4.9E-08 60.2 9.1 91 178-274 10-104 (314)
252 PF01795 Methyltransf_5: MraW 97.1 0.0005 1.1E-08 65.2 4.2 92 178-276 7-103 (310)
253 PRK11760 putative 23S rRNA C24 97.1 0.0016 3.5E-08 62.4 7.5 68 194-273 210-277 (357)
254 PF07669 Eco57I: Eco57I restri 97.1 0.00039 8.5E-09 55.7 2.6 44 266-323 2-45 (106)
255 KOG3201 Uncharacterized conser 97.0 0.00022 4.9E-09 61.1 1.2 94 174-272 12-109 (201)
256 PF01555 N6_N4_Mtase: DNA meth 96.9 0.0029 6.2E-08 56.1 7.5 59 172-238 173-231 (231)
257 KOG1269 SAM-dependent methyltr 96.9 0.0013 2.8E-08 63.9 5.3 101 195-324 110-210 (364)
258 KOG1253 tRNA methyltransferase 96.9 0.00055 1.2E-08 67.9 2.5 83 195-278 109-194 (525)
259 KOG2940 Predicted methyltransf 96.9 0.0017 3.8E-08 58.7 5.2 72 197-274 74-145 (325)
260 KOG4058 Uncharacterized conser 96.8 0.0033 7.2E-08 53.2 6.3 75 179-259 60-134 (199)
261 PRK11524 putative methyltransf 96.8 0.0049 1.1E-07 57.9 8.0 59 176-242 194-252 (284)
262 PRK13699 putative methylase; P 96.8 0.0048 1E-07 56.2 7.7 64 172-243 145-208 (227)
263 KOG4589 Cell division protein 96.7 0.0054 1.2E-07 54.0 7.1 102 195-323 69-178 (232)
264 PF07091 FmrO: Ribosomal RNA m 96.7 0.007 1.5E-07 55.6 8.1 72 196-272 106-177 (251)
265 KOG1501 Arginine N-methyltrans 96.6 0.0039 8.4E-08 61.2 5.9 60 197-258 68-127 (636)
266 KOG3115 Methyltransferase-like 96.5 0.0072 1.6E-07 53.8 6.6 66 196-262 61-132 (249)
267 PF04445 SAM_MT: Putative SAM- 96.5 0.011 2.4E-07 54.0 8.0 79 197-278 77-163 (234)
268 KOG1227 Putative methyltransfe 96.5 0.0011 2.3E-08 62.1 1.3 73 196-272 195-268 (351)
269 KOG0822 Protein kinase inhibit 96.5 0.0063 1.4E-07 61.0 6.5 75 196-272 368-445 (649)
270 KOG3045 Predicted RNA methylas 96.3 0.013 2.8E-07 54.1 7.2 79 196-324 181-259 (325)
271 PRK11524 putative methyltransf 96.3 0.0037 8E-08 58.7 3.6 67 248-324 8-75 (284)
272 KOG2198 tRNA cytosine-5-methyl 96.2 0.037 8E-07 53.4 10.2 124 192-324 152-291 (375)
273 PF11968 DUF3321: Putative met 96.2 0.0081 1.8E-07 54.0 5.3 107 175-324 31-139 (219)
274 PF00145 DNA_methylase: C-5 cy 96.2 0.0082 1.8E-07 56.4 5.6 75 198-282 2-77 (335)
275 KOG3178 Hydroxyindole-O-methyl 96.2 0.011 2.4E-07 56.6 6.4 92 197-324 179-270 (342)
276 PHA01634 hypothetical protein 96.2 0.027 5.8E-07 46.7 7.7 72 195-273 28-99 (156)
277 PF04989 CmcI: Cephalosporin h 96.1 0.0081 1.8E-07 53.8 4.7 78 173-259 17-97 (206)
278 COG1889 NOP1 Fibrillarin-like 96.0 0.085 1.8E-06 47.1 10.6 95 174-273 56-152 (231)
279 PRK13699 putative methylase; P 95.8 0.0088 1.9E-07 54.4 3.7 65 249-324 2-67 (227)
280 KOG2078 tRNA modification enzy 95.8 0.0085 1.8E-07 58.7 3.7 63 195-260 249-312 (495)
281 PF10354 DUF2431: Domain of un 95.8 0.069 1.5E-06 46.3 9.0 108 202-323 3-119 (166)
282 COG1189 Predicted rRNA methyla 95.7 0.067 1.5E-06 48.8 9.0 79 193-279 77-157 (245)
283 PF03141 Methyltransf_29: Puta 95.5 0.025 5.4E-07 56.7 5.6 94 167-272 90-187 (506)
284 TIGR00675 dcm DNA-methyltransf 95.4 0.035 7.5E-07 53.0 6.2 73 199-280 1-73 (315)
285 COG0270 Dcm Site-specific DNA 95.2 0.038 8.2E-07 53.0 5.9 77 197-281 4-82 (328)
286 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.2 0.026 5.7E-07 52.3 4.5 107 193-324 54-194 (256)
287 PRK10458 DNA cytosine methylas 95.1 0.19 4E-06 50.7 10.8 81 196-281 88-184 (467)
288 KOG3987 Uncharacterized conser 95.1 0.0042 9.1E-08 55.5 -0.9 41 195-238 112-152 (288)
289 KOG1331 Predicted methyltransf 94.8 0.029 6.4E-07 52.4 3.6 92 196-323 46-137 (293)
290 PF04672 Methyltransf_19: S-ad 94.6 0.11 2.5E-06 48.3 7.2 62 197-259 70-133 (267)
291 KOG2798 Putative trehalase [Ca 94.6 0.14 2.9E-06 48.7 7.6 40 195-237 150-189 (369)
292 KOG1596 Fibrillarin and relate 93.8 0.2 4.3E-06 46.0 6.7 78 193-273 154-233 (317)
293 KOG3924 Putative protein methy 93.8 0.12 2.5E-06 50.5 5.5 95 177-273 175-279 (419)
294 KOG1099 SAM-dependent methyltr 93.7 0.093 2E-06 47.7 4.5 99 197-323 43-157 (294)
295 KOG2793 Putative N2,N2-dimethy 93.7 0.34 7.5E-06 44.7 8.2 75 196-273 87-169 (248)
296 PTZ00357 methyltransferase; Pr 93.7 0.27 5.8E-06 51.3 8.1 75 198-272 703-798 (1072)
297 COG1064 AdhP Zn-dependent alco 93.6 0.37 8.1E-06 46.4 8.6 69 193-273 164-236 (339)
298 KOG2360 Proliferation-associat 93.5 0.24 5.2E-06 48.2 7.1 86 194-280 212-298 (413)
299 COG1565 Uncharacterized conser 93.3 0.41 8.9E-06 46.4 8.3 67 177-244 60-133 (370)
300 COG4798 Predicted methyltransf 93.0 0.22 4.8E-06 44.3 5.6 108 195-324 48-161 (238)
301 KOG1562 Spermidine synthase [A 93.0 0.26 5.6E-06 46.5 6.3 108 194-324 120-231 (337)
302 PF02636 Methyltransf_28: Puta 92.8 0.3 6.4E-06 44.9 6.5 47 196-242 19-72 (252)
303 PF10237 N6-adenineMlase: Prob 92.0 2.3 5E-05 36.7 10.6 85 176-279 12-99 (162)
304 PRK01747 mnmC bifunctional tRN 92.0 0.6 1.3E-05 49.0 8.3 106 196-324 58-201 (662)
305 PF07757 AdoMet_MTase: Predict 91.8 0.26 5.6E-06 39.6 4.1 32 195-229 58-89 (112)
306 COG4889 Predicted helicase [Ge 91.7 0.35 7.5E-06 51.7 6.0 155 169-324 816-1017(1518)
307 KOG2651 rRNA adenine N-6-methy 90.9 0.79 1.7E-05 44.7 7.1 42 196-239 154-195 (476)
308 COG4301 Uncharacterized conser 90.9 3.5 7.5E-05 38.2 10.8 88 172-263 59-149 (321)
309 PF05050 Methyltransf_21: Meth 89.9 0.98 2.1E-05 37.6 6.3 55 201-255 1-60 (167)
310 KOG2352 Predicted spermine/spe 89.6 1.8 3.8E-05 43.5 8.6 106 198-324 51-156 (482)
311 PF07279 DUF1442: Protein of u 88.7 4 8.7E-05 36.8 9.4 76 196-273 42-122 (218)
312 KOG3350 Uncharacterized conser 88.6 4.3 9.4E-05 35.7 9.2 124 133-280 21-149 (217)
313 PRK09424 pntA NAD(P) transhydr 88.5 2.2 4.9E-05 43.5 8.7 43 194-238 163-206 (509)
314 PF03686 UPF0146: Uncharacteri 87.5 1.2 2.6E-05 36.9 4.9 65 196-275 14-80 (127)
315 PRK07102 short chain dehydroge 87.1 5 0.00011 35.7 9.4 78 198-277 3-87 (243)
316 PRK07523 gluconate 5-dehydroge 86.6 6.9 0.00015 35.1 10.1 81 195-278 9-99 (255)
317 PF02086 MethyltransfD12: D12 86.5 1.2 2.6E-05 40.5 5.1 52 179-237 8-59 (260)
318 KOG2352 Predicted spermine/spe 85.4 0.48 1E-05 47.5 1.9 77 195-273 295-377 (482)
319 KOG2920 Predicted methyltransf 85.3 1.2 2.7E-05 41.7 4.5 38 194-233 115-152 (282)
320 PRK12384 sorbitol-6-phosphate 85.1 8.8 0.00019 34.5 10.1 81 197-278 3-93 (259)
321 PRK08251 short chain dehydroge 84.9 10 0.00023 33.7 10.4 81 197-278 3-93 (248)
322 KOG1201 Hydroxysteroid 17-beta 84.8 9.4 0.0002 36.2 10.1 85 193-283 35-131 (300)
323 PRK06124 gluconate 5-dehydroge 84.7 9.7 0.00021 34.1 10.1 81 195-278 10-100 (256)
324 PRK09880 L-idonate 5-dehydroge 84.5 4.2 9.2E-05 38.6 7.9 43 195-238 169-212 (343)
325 COG0863 DNA modification methy 84.3 4.5 9.8E-05 37.5 7.9 47 194-243 221-267 (302)
326 PF03141 Methyltransf_29: Puta 83.9 0.54 1.2E-05 47.3 1.5 96 197-324 367-462 (506)
327 PRK06940 short chain dehydroge 83.9 4.9 0.00011 37.0 7.9 76 198-277 4-87 (275)
328 PRK12826 3-ketoacyl-(acyl-carr 83.7 10 0.00022 33.5 9.7 80 196-278 6-95 (251)
329 KOG0024 Sorbitol dehydrogenase 83.3 2.6 5.6E-05 40.4 5.7 46 192-238 166-212 (354)
330 COG5459 Predicted rRNA methyla 83.0 2.8 6E-05 40.7 5.8 45 192-236 110-154 (484)
331 PRK07533 enoyl-(acyl carrier p 83.0 13 0.00029 33.6 10.3 80 195-277 9-99 (258)
332 COG2961 ComJ Protein involved 82.4 27 0.00059 32.4 11.7 77 200-282 93-172 (279)
333 PRK08945 putative oxoacyl-(acy 82.4 5.3 0.00012 35.7 7.4 80 195-276 11-102 (247)
334 PF04378 RsmJ: Ribosomal RNA s 82.2 0.44 9.6E-06 43.9 0.1 78 200-283 62-142 (245)
335 PRK07666 fabG 3-ketoacyl-(acyl 82.1 15 0.00031 32.6 10.0 79 196-277 7-95 (239)
336 PRK06949 short chain dehydroge 81.5 17 0.00037 32.4 10.4 79 195-276 8-96 (258)
337 PRK06125 short chain dehydroge 81.5 16 0.00034 32.9 10.2 81 196-278 7-93 (259)
338 PRK08213 gluconate 5-dehydroge 81.5 13 0.00027 33.5 9.5 80 195-277 11-100 (259)
339 PRK05599 hypothetical protein; 80.8 9.2 0.0002 34.4 8.3 77 199-277 3-88 (246)
340 PRK08085 gluconate 5-dehydroge 80.4 17 0.00036 32.6 9.9 79 196-277 9-97 (254)
341 KOG2782 Putative SAM dependent 80.4 1.7 3.7E-05 39.4 3.2 66 171-241 23-88 (303)
342 PF02254 TrkA_N: TrkA-N domain 80.4 3.2 6.9E-05 32.7 4.6 61 204-272 4-68 (116)
343 PRK08594 enoyl-(acyl carrier p 80.3 19 0.00041 32.7 10.3 82 195-277 6-98 (257)
344 PRK06079 enoyl-(acyl carrier p 80.3 16 0.00035 32.9 9.8 78 195-277 6-94 (252)
345 PRK07454 short chain dehydroge 80.0 19 0.0004 31.9 10.0 79 196-277 6-94 (241)
346 PRK06138 short chain dehydroge 79.9 18 0.0004 32.0 9.9 79 196-278 5-93 (252)
347 PRK05867 short chain dehydroge 79.7 15 0.00033 32.9 9.4 81 195-278 8-98 (253)
348 PRK07576 short chain dehydroge 79.2 21 0.00045 32.4 10.2 78 195-275 8-95 (264)
349 KOG4174 Uncharacterized conser 79.1 11 0.00024 35.0 8.0 117 196-323 57-184 (282)
350 PF00106 adh_short: short chai 79.1 11 0.00024 31.2 7.7 84 199-285 3-99 (167)
351 PRK06914 short chain dehydroge 79.0 24 0.00052 32.0 10.6 81 197-278 4-93 (280)
352 PF05711 TylF: Macrocin-O-meth 78.5 4.4 9.6E-05 37.4 5.4 101 196-324 75-207 (248)
353 cd08254 hydroxyacyl_CoA_DH 6-h 78.2 8 0.00017 36.0 7.3 43 194-238 164-207 (338)
354 PRK08703 short chain dehydroge 77.9 14 0.00029 32.8 8.4 80 195-276 5-97 (239)
355 KOG1098 Putative SAM-dependent 77.8 2.2 4.8E-05 44.1 3.5 36 195-230 44-79 (780)
356 PRK07985 oxidoreductase; Provi 77.0 12 0.00025 34.9 8.0 79 195-276 48-138 (294)
357 PRK08340 glucose-1-dehydrogena 76.9 14 0.0003 33.3 8.3 75 198-276 2-86 (259)
358 PRK05565 fabG 3-ketoacyl-(acyl 76.8 23 0.00049 31.2 9.5 80 196-278 5-95 (247)
359 PRK05875 short chain dehydroge 76.8 18 0.00039 32.8 9.1 80 196-276 7-96 (276)
360 PRK06194 hypothetical protein; 76.8 23 0.0005 32.3 9.9 80 196-278 6-95 (287)
361 TIGR01963 PHB_DH 3-hydroxybuty 76.8 24 0.00052 31.3 9.8 77 198-277 3-89 (255)
362 PLN03209 translocon at the inn 76.0 12 0.00026 38.8 8.2 81 195-276 79-169 (576)
363 PRK07063 short chain dehydroge 75.9 29 0.00062 31.2 10.1 81 195-276 6-96 (260)
364 PRK15001 SAM-dependent 23S rib 75.9 21 0.00046 35.0 9.6 80 176-272 32-112 (378)
365 COG1063 Tdh Threonine dehydrog 75.8 6.4 0.00014 38.0 6.0 43 195-238 168-211 (350)
366 PRK09242 tropinone reductase; 75.6 30 0.00064 31.0 10.1 81 196-277 9-99 (257)
367 PRK08643 acetoin reductase; Va 75.5 25 0.00054 31.4 9.6 79 198-279 4-92 (256)
368 TIGR02415 23BDH acetoin reduct 75.2 27 0.00059 31.0 9.7 80 198-280 2-91 (254)
369 PRK07814 short chain dehydroge 75.0 29 0.00062 31.3 9.9 79 195-276 9-97 (263)
370 PRK07024 short chain dehydroge 74.5 15 0.00033 33.0 7.9 74 198-275 4-87 (257)
371 PRK06182 short chain dehydroge 74.5 20 0.00043 32.6 8.7 74 197-279 4-87 (273)
372 PRK08415 enoyl-(acyl carrier p 73.8 45 0.00098 30.6 11.0 79 196-277 5-94 (274)
373 PRK07062 short chain dehydroge 73.7 36 0.00078 30.6 10.2 82 195-277 7-98 (265)
374 PRK07326 short chain dehydroge 73.5 18 0.00039 31.8 8.0 76 196-275 6-91 (237)
375 PLN02989 cinnamyl-alcohol dehy 73.5 11 0.00024 35.2 6.9 79 196-275 5-86 (325)
376 PRK05854 short chain dehydroge 73.4 30 0.00065 32.5 9.8 81 195-276 13-103 (313)
377 PRK06603 enoyl-(acyl carrier p 73.4 42 0.0009 30.4 10.5 80 195-277 7-97 (260)
378 PRK06181 short chain dehydroge 73.0 25 0.00055 31.5 9.0 76 198-276 3-88 (263)
379 PRK07984 enoyl-(acyl carrier p 72.9 32 0.0007 31.4 9.7 80 196-278 6-96 (262)
380 PLN02253 xanthoxin dehydrogena 72.7 19 0.00042 32.8 8.2 77 196-276 18-104 (280)
381 PRK06113 7-alpha-hydroxysteroi 72.3 31 0.00067 30.9 9.3 80 195-277 10-99 (255)
382 PRK06114 short chain dehydroge 72.3 35 0.00077 30.5 9.7 81 195-278 7-98 (254)
383 cd08283 FDH_like_1 Glutathione 71.8 9.1 0.0002 37.1 6.1 45 194-239 183-228 (386)
384 PRK06197 short chain dehydroge 71.8 30 0.00064 32.1 9.3 81 195-276 15-105 (306)
385 PRK07774 short chain dehydroge 71.1 29 0.00063 30.7 8.8 79 196-277 6-94 (250)
386 PRK05993 short chain dehydroge 71.1 29 0.00063 31.7 9.0 73 197-278 5-88 (277)
387 PRK08159 enoyl-(acyl carrier p 71.0 50 0.0011 30.2 10.6 80 195-277 9-99 (272)
388 PF12242 Eno-Rase_NADH_b: NAD( 70.9 24 0.00051 26.7 6.6 54 177-230 20-74 (78)
389 KOG0919 C-5 cytosine-specific 70.9 4.2 9.1E-05 37.5 3.1 80 196-280 3-83 (338)
390 PRK06196 oxidoreductase; Provi 70.9 26 0.00056 32.8 8.7 76 195-277 25-110 (315)
391 PRK07831 short chain dehydroge 70.7 44 0.00096 30.0 10.0 82 196-278 17-109 (262)
392 PRK12429 3-hydroxybutyrate deh 70.6 40 0.00086 29.9 9.6 79 197-278 5-93 (258)
393 PRK08265 short chain dehydroge 70.5 33 0.00072 30.9 9.2 76 196-277 6-91 (261)
394 PRK06172 short chain dehydroge 70.2 31 0.00068 30.7 8.9 80 195-277 6-95 (253)
395 PRK07067 sorbitol dehydrogenas 70.2 40 0.00086 30.2 9.6 76 196-277 6-91 (257)
396 PRK05876 short chain dehydroge 69.6 51 0.0011 30.2 10.3 81 195-278 5-95 (275)
397 PRK12824 acetoacetyl-CoA reduc 69.3 41 0.00089 29.5 9.4 79 198-279 4-93 (245)
398 COG1748 LYS9 Saccharopine dehy 69.3 11 0.00023 37.3 5.8 74 198-278 3-81 (389)
399 PRK06139 short chain dehydroge 69.0 46 0.00099 31.7 10.1 79 196-277 7-95 (330)
400 TIGR01832 kduD 2-deoxy-D-gluco 68.9 47 0.001 29.4 9.7 79 195-278 4-92 (248)
401 PRK13394 3-hydroxybutyrate deh 68.0 42 0.00091 29.9 9.2 79 196-277 7-95 (262)
402 PRK12743 oxidoreductase; Provi 67.3 49 0.0011 29.6 9.5 79 197-278 3-92 (256)
403 PRK06500 short chain dehydroge 66.9 53 0.0011 29.0 9.6 77 196-278 6-92 (249)
404 cd08281 liver_ADH_like1 Zinc-d 66.8 17 0.00036 35.0 6.7 43 194-238 190-234 (371)
405 PLN02780 ketoreductase/ oxidor 66.8 40 0.00088 31.9 9.2 80 196-276 53-142 (320)
406 PRK07097 gluconate 5-dehydroge 66.1 70 0.0015 28.8 10.4 81 195-278 9-99 (265)
407 PRK07109 short chain dehydroge 65.8 63 0.0014 30.7 10.4 79 196-277 8-96 (334)
408 PRK12939 short chain dehydroge 65.7 42 0.00091 29.6 8.7 79 196-277 7-95 (250)
409 PRK07677 short chain dehydroge 65.7 50 0.0011 29.4 9.2 76 197-275 2-87 (252)
410 PRK06179 short chain dehydroge 65.3 26 0.00057 31.6 7.4 71 197-278 5-85 (270)
411 PRK06128 oxidoreductase; Provi 65.3 57 0.0012 30.2 9.8 80 195-277 54-145 (300)
412 PRK07478 short chain dehydroge 64.9 42 0.0009 29.9 8.5 79 196-277 6-94 (254)
413 PRK07904 short chain dehydroge 64.7 28 0.00061 31.4 7.4 80 196-277 8-98 (253)
414 PF00107 ADH_zinc_N: Zinc-bind 64.5 10 0.00022 30.2 4.0 32 205-238 1-32 (130)
415 PRK08263 short chain dehydroge 64.3 53 0.0012 29.8 9.3 76 197-278 4-89 (275)
416 PRK12828 short chain dehydroge 64.3 44 0.00095 29.1 8.4 78 196-278 7-94 (239)
417 PRK08217 fabG 3-ketoacyl-(acyl 64.2 62 0.0013 28.5 9.5 79 196-277 5-93 (253)
418 PRK07889 enoyl-(acyl carrier p 64.1 23 0.00051 32.0 6.8 78 195-277 6-96 (256)
419 PRK08993 2-deoxy-D-gluconate 3 64.1 56 0.0012 29.2 9.2 78 195-277 9-96 (253)
420 PRK07832 short chain dehydroge 63.3 33 0.00072 31.1 7.7 77 199-277 3-89 (272)
421 PRK06935 2-deoxy-D-gluconate 3 63.2 68 0.0015 28.7 9.7 80 195-278 14-103 (258)
422 PRK12744 short chain dehydroge 63.2 96 0.0021 27.6 10.7 78 196-276 8-99 (257)
423 TIGR03206 benzo_BadH 2-hydroxy 62.9 83 0.0018 27.7 10.1 80 196-278 3-92 (250)
424 PRK08267 short chain dehydroge 62.4 55 0.0012 29.3 8.9 76 198-278 3-89 (260)
425 PRK05786 fabG 3-ketoacyl-(acyl 62.2 57 0.0012 28.6 8.8 76 196-275 5-90 (238)
426 PRK07035 short chain dehydroge 61.9 71 0.0015 28.3 9.5 79 196-277 8-96 (252)
427 PRK05650 short chain dehydroge 61.8 81 0.0017 28.4 9.9 79 198-279 2-90 (270)
428 PRK07370 enoyl-(acyl carrier p 61.7 52 0.0011 29.7 8.6 80 195-277 5-98 (258)
429 PF05430 Methyltransf_30: S-ad 61.0 3.6 7.8E-05 33.8 0.7 53 249-324 33-85 (124)
430 COG1062 AdhC Zn-dependent alco 61.0 24 0.00051 34.3 6.2 47 192-239 182-229 (366)
431 PF13561 adh_short_C2: Enoyl-( 60.8 24 0.00052 31.4 6.1 73 203-279 1-86 (241)
432 PRK12823 benD 1,6-dihydroxycyc 60.6 54 0.0012 29.3 8.5 76 196-275 8-93 (260)
433 PRK07231 fabG 3-ketoacyl-(acyl 60.5 61 0.0013 28.5 8.7 78 196-277 5-92 (251)
434 PLN02662 cinnamyl-alcohol dehy 60.4 28 0.0006 32.3 6.7 79 196-275 4-85 (322)
435 PRK06101 short chain dehydroge 60.3 66 0.0014 28.5 8.9 73 198-277 3-82 (240)
436 COG1255 Uncharacterized protei 60.2 20 0.00043 29.3 4.8 62 196-272 14-76 (129)
437 PRK07069 short chain dehydroge 60.1 45 0.00097 29.5 7.8 74 205-278 7-91 (251)
438 PF05206 TRM13: Methyltransfer 59.9 24 0.00053 32.7 6.1 36 195-230 18-57 (259)
439 PRK08339 short chain dehydroge 59.8 1.1E+02 0.0025 27.5 10.6 80 195-276 7-95 (263)
440 PRK08862 short chain dehydroge 59.5 93 0.002 27.6 9.7 78 196-276 5-93 (227)
441 PRK05653 fabG 3-ketoacyl-(acyl 59.2 92 0.002 27.1 9.6 81 196-279 5-95 (246)
442 PRK08690 enoyl-(acyl carrier p 59.2 46 0.00099 30.1 7.8 80 195-277 5-95 (261)
443 KOG0725 Reductases with broad 59.2 1E+02 0.0022 28.6 10.2 83 195-280 7-103 (270)
444 PRK09135 pteridine reductase; 59.1 1E+02 0.0022 27.0 9.9 80 196-277 6-96 (249)
445 KOG0821 Predicted ribosomal RN 58.8 25 0.00054 32.2 5.7 62 193-258 48-109 (326)
446 PRK12745 3-ketoacyl-(acyl-carr 58.7 63 0.0014 28.6 8.6 76 198-276 4-90 (256)
447 PRK05866 short chain dehydroge 58.7 70 0.0015 29.7 9.1 78 196-276 40-127 (293)
448 PRK09186 flagellin modificatio 58.4 72 0.0016 28.3 8.9 78 196-274 4-91 (256)
449 PF02153 PDH: Prephenate dehyd 58.3 33 0.00071 31.5 6.7 29 209-238 1-29 (258)
450 PRK12748 3-ketoacyl-(acyl-carr 58.2 88 0.0019 27.9 9.4 79 196-277 5-106 (256)
451 PRK05855 short chain dehydroge 58.0 74 0.0016 32.0 9.8 78 197-277 316-403 (582)
452 PRK07775 short chain dehydroge 57.8 1.1E+02 0.0023 27.9 10.0 78 197-277 11-98 (274)
453 PRK14106 murD UDP-N-acetylmura 57.3 54 0.0012 32.4 8.5 75 196-279 5-81 (450)
454 PRK08324 short chain dehydroge 57.1 75 0.0016 33.5 9.9 81 195-279 421-511 (681)
455 PRK09291 short chain dehydroge 57.1 1.1E+02 0.0023 27.2 9.8 77 198-277 4-84 (257)
456 COG3510 CmcI Cephalosporin hyd 56.8 33 0.00072 30.7 6.0 59 195-259 69-130 (237)
457 KOG1209 1-Acyl dihydroxyaceton 56.7 41 0.00089 30.8 6.6 72 195-274 6-89 (289)
458 cd08237 ribitol-5-phosphate_DH 56.6 25 0.00054 33.4 5.8 45 194-238 162-207 (341)
459 PRK08264 short chain dehydroge 56.4 62 0.0013 28.4 8.0 71 196-276 6-83 (238)
460 PRK07791 short chain dehydroge 56.2 1E+02 0.0022 28.3 9.7 81 195-278 5-104 (286)
461 PRK12829 short chain dehydroge 56.2 92 0.002 27.6 9.2 78 195-277 10-97 (264)
462 PRK08226 short chain dehydroge 56.2 1.1E+02 0.0025 27.2 9.9 80 196-279 6-95 (263)
463 PRK08277 D-mannonate oxidoredu 56.1 85 0.0018 28.4 9.1 79 195-276 9-97 (278)
464 KOG0022 Alcohol dehydrogenase, 55.4 31 0.00067 33.2 5.9 93 144-238 133-235 (375)
465 PRK05872 short chain dehydroge 55.4 92 0.002 28.8 9.3 80 195-278 8-97 (296)
466 PRK06505 enoyl-(acyl carrier p 55.4 64 0.0014 29.5 8.1 80 195-277 6-96 (271)
467 PLN02668 indole-3-acetate carb 55.1 9 0.0002 37.7 2.5 34 196-229 64-111 (386)
468 PRK08278 short chain dehydroge 54.6 95 0.002 28.2 9.1 80 196-278 6-102 (273)
469 PRK09072 short chain dehydroge 54.2 1.1E+02 0.0023 27.5 9.3 79 196-278 5-92 (263)
470 PRK12935 acetoacetyl-CoA reduc 53.8 1.3E+02 0.0028 26.5 9.7 80 196-278 6-96 (247)
471 PRK12481 2-deoxy-D-gluconate 3 53.8 1.1E+02 0.0023 27.4 9.3 79 195-278 7-95 (251)
472 PRK07453 protochlorophyllide o 53.3 76 0.0016 29.7 8.5 78 196-276 6-93 (322)
473 PRK07890 short chain dehydroge 53.1 1.1E+02 0.0024 27.1 9.2 79 196-277 5-93 (258)
474 PLN02657 3,8-divinyl protochlo 52.7 49 0.0011 32.3 7.3 76 195-273 59-143 (390)
475 PRK06482 short chain dehydroge 52.6 1.1E+02 0.0024 27.6 9.2 74 198-277 4-87 (276)
476 PRK07041 short chain dehydroge 52.4 92 0.002 27.1 8.4 70 205-277 5-80 (230)
477 COG0338 Dam Site-specific DNA 52.4 15 0.00032 34.5 3.3 32 249-280 157-188 (274)
478 PRK12859 3-ketoacyl-(acyl-carr 52.4 1.4E+02 0.003 26.7 9.8 82 195-278 5-108 (256)
479 COG2933 Predicted SAM-dependen 52.4 60 0.0013 30.6 7.1 68 194-273 210-277 (358)
480 PRK06720 hypothetical protein; 52.2 98 0.0021 26.4 8.3 79 196-277 16-104 (169)
481 COG0771 MurD UDP-N-acetylmuram 51.9 33 0.00073 34.5 5.9 72 196-276 7-79 (448)
482 PRK08589 short chain dehydroge 51.8 1.2E+02 0.0026 27.4 9.4 78 196-277 6-93 (272)
483 PRK06398 aldose dehydrogenase; 51.3 52 0.0011 29.6 6.8 69 195-277 5-83 (258)
484 COG5379 BtaA S-adenosylmethion 51.3 37 0.0008 32.4 5.6 45 195-242 63-107 (414)
485 PRK06057 short chain dehydroge 50.7 56 0.0012 29.1 6.9 75 195-277 6-90 (255)
486 PRK08303 short chain dehydroge 50.7 1E+02 0.0022 28.9 8.8 77 195-274 7-103 (305)
487 cd01065 NAD_bind_Shikimate_DH 50.3 97 0.0021 25.3 7.8 72 195-276 18-91 (155)
488 PRK13656 trans-2-enoyl-CoA red 50.0 2.3E+02 0.0049 28.2 11.2 82 195-279 40-144 (398)
489 PRK03369 murD UDP-N-acetylmura 49.7 75 0.0016 32.1 8.2 71 195-278 11-82 (488)
490 PLN02896 cinnamyl-alcohol dehy 49.6 71 0.0015 30.3 7.7 79 195-277 9-90 (353)
491 TIGR01746 Thioester-redct thio 49.5 42 0.00092 31.3 6.1 73 202-274 4-96 (367)
492 PRK12475 thiamine/molybdopteri 49.4 63 0.0014 31.1 7.3 76 195-272 23-122 (338)
493 TIGR02356 adenyl_thiF thiazole 49.4 55 0.0012 28.9 6.4 76 195-272 20-117 (202)
494 PF03721 UDPG_MGDP_dh_N: UDP-g 49.3 12 0.00026 32.7 2.1 33 205-237 7-40 (185)
495 cd08293 PTGR2 Prostaglandin re 49.2 55 0.0012 30.6 6.8 40 197-238 156-198 (345)
496 PRK07825 short chain dehydroge 48.9 1.4E+02 0.003 26.9 9.2 76 196-278 5-90 (273)
497 TIGR02632 RhaD_aldol-ADH rhamn 48.7 1.6E+02 0.0035 31.1 10.8 82 195-277 413-504 (676)
498 PRK07074 short chain dehydroge 48.0 1.3E+02 0.0029 26.6 8.9 75 198-277 4-88 (257)
499 PF11899 DUF3419: Protein of u 47.8 56 0.0012 32.2 6.7 45 194-241 34-78 (380)
500 COG0604 Qor NADPH:quinone redu 47.6 48 0.0011 31.6 6.2 73 194-272 141-217 (326)
No 1
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=333.50 Aligned_cols=250 Identities=34% Similarity=0.510 Sum_probs=212.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccC-ChhHHH
Q 020573 56 PPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRL-RIGLDE 134 (324)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~ 134 (324)
.|.|.++.+.|..|..|+.....+...+ ......|+..++++..-.... +.. .+.++ ...++.
T Consensus 26 ~p~hat~~sal~~~~~W~~~l~~~~~e~------------~k~~~~~i~shvL~~Kf~si~-ds~---~~~pl~~~ql~~ 89 (328)
T KOG2904|consen 26 TPSHATSLSALELLLPWTRTLEQAGEES------------SKLSYKWIVSHVLPDKFWSIE-DSI---VDDPLVILQLES 89 (328)
T ss_pred CCccCccchhhHhhchHHHHHHHhcCch------------hhhhhHHHHHhhhhhhhcccc-chh---hccccchhHHHH
Confidence 5888999999999999997664432221 125678999999886621111 111 12234 446788
Q ss_pred HHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 135 LYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 135 ~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
.++.|.+|+. +.|+|||+|+++|.++.+.+.++|||||||||.+|+++.+.+ .+.....+..|||+|||||+|++.++
T Consensus 90 i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsll 167 (328)
T KOG2904|consen 90 IRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSLL 167 (328)
T ss_pred HHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHHH
Confidence 8888888875 899999999999999999999999999999999999999988 55445556689999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE----EcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhh
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR----QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVG 290 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~----~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~ 290 (324)
..+ +++.|+|+|.|+.|+.+|.+|++++++.+++.++ ++|++++.+.+.+++|++|||||||+.+|+..+++||+
T Consensus 168 ~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~ 246 (328)
T KOG2904|consen 168 HGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVR 246 (328)
T ss_pred hcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchhe
Confidence 998 6899999999999999999999999999999888 67887776666789999999999999999999999999
Q ss_pred cccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 291 KHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 291 ~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|||..||+||.+|++.+.+++.-|.++|+|||.
T Consensus 247 ~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 247 LYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred ecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 9999999999999999999999999999999994
No 2
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-43 Score=328.34 Aligned_cols=232 Identities=34% Similarity=0.453 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.+|.+|+.+++...+ . ++ ..+++.++.+.++....... ......+..+..+.+..+..|+.
T Consensus 2 ~~~~~l~~a~~~l~~~~-~---~~--------~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rr~ 64 (280)
T COG2890 2 TIRQALREAVSRLSAAG-G---TP--------NLDAELLLLHLLGKPRDQLL-----AHPEAELSEEELERLRELLERRA 64 (280)
T ss_pred cHHHHHHHHHHHHHhcC-C---CC--------cccHHHHHHHHhCCCHHHHh-----hccccccCHHHHHHHHHHHHHHH
Confidence 68899999998888766 1 11 14677788888877543222 11223455455555555556669
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+++|+|||+|..+|+++.|.|+++|++|||+||.+++.++... ... .. +|||+|||||++++++++++ ++++|+
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~ 138 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI 138 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence 9999999999999999999999999999999999999987433 111 11 79999999999999999996 889999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG 304 (324)
|+|+|+.|+++|++|++.+|+ .++.++++|||+.+. ++||+||+||||++.. ...+.+++.+|||..||++|.||
T Consensus 139 a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 139 AVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred EEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC---CceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccH
Confidence 999999999999999999999 568888889998765 4999999999999998 66778888899999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
++++++|+.++.++|+|||+
T Consensus 214 l~~~~~i~~~a~~~l~~~g~ 233 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGV 233 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcE
Confidence 99999999999999999985
No 3
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=2.2e-42 Score=346.56 Aligned_cols=240 Identities=29% Similarity=0.402 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.++++|+......++.. . ...|++||++++++.+...+.+. .+..++.+..+.++.+.+|+.+
T Consensus 5 ~~~~l~~~~~~l~~~g~~---------~--~~~~a~~Ll~~~l~~~~~~l~~~-----~~~~l~~~~~~~~~~~~~rr~~ 68 (506)
T PRK01544 5 IKQILSDATDKLNKIGIS---------S--PQLEARILLQHVINKPIEYLLIN-----LDEQLNEAEIEAFEKLLERRLK 68 (506)
T ss_pred HHHHHHHHHHHHHHcCCC---------C--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 556777776665544321 1 13689999999999875433311 1235666667778888889899
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhc--------------------CCCCCCCeEEEEcCC
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD--------------------NDGLRDGFWVDLGTG 205 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~--------------------~~~~~~~~VLDLGcG 205 (324)
|+|+|||+|+++|+|++|+|+++||||||+||.+|+.+++.+... .....+.+|||+|||
T Consensus 69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G 148 (506)
T PRK01544 69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG 148 (506)
T ss_pred CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence 999999999999999999999999999999999999998765110 001134589999999
Q ss_pred ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccc
Q 020573 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 206 sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l 285 (324)
||++++.+++.+ ++++|+|+|+|+.|++.|++|++.+++.++++++++|+++.+. .++||+||+||||++..+...+
T Consensus 149 sG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l 225 (506)
T PRK01544 149 SGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEM 225 (506)
T ss_pred hhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhc
Confidence 999999999986 7889999999999999999999999998889999999987654 3589999999999999988888
Q ss_pred hhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 286 ~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++..|||..||+||+||++.|+.|++.+.++|+|||+
T Consensus 226 ~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 226 AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 899999999999999999999999999999999999995
No 4
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=100.00 E-value=1.1e-41 Score=319.12 Aligned_cols=237 Identities=33% Similarity=0.422 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.++++|+.......+.. +. ...|+++|++++++.+.....+. .+..++.+..+.+..+.+|+.+
T Consensus 3 ~~~~~~~~~~~l~~~~~~--------~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~r~~ 67 (284)
T TIGR00536 3 IQEALRWASSALSRAIAR--------EN--PWLEALLLLLHDLGRERDLLLAF-----LTEELTPDEKERIFRLVLRRVK 67 (284)
T ss_pred HHHHHHHHHHHHHHCCCC--------CC--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 456777776665433321 01 13689999999999875443311 1235677667778888888899
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
++|+|||+|.++|++++|.|++++|+|||+||.+++.+++.+ .. .....+|||+|||+|++++.++..+ ++.+|+|
T Consensus 68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~-~~--~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~a 143 (284)
T TIGR00536 68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL-IS--QNPILHILDLGTGSGCIALALAYEF-PNAEVIA 143 (284)
T ss_pred CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh-hh--cCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEE
Confidence 999999999999999999999999999999999999988765 11 1122589999999999999999986 7789999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+|+|+++++.|++|++.+++.++++++++|+++.+.. .+||+||+||||++..++..+ +++..|||+.||+||.||+
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHH
Confidence 9999999999999999999977899999999886542 389999999999999887777 6777899999999999999
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+++++.++|+|||+
T Consensus 221 ~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGF 239 (284)
T ss_pred HHHHHHHHHHHHhccCCCE
Confidence 9999999999999999995
No 5
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=7e-41 Score=316.63 Aligned_cols=248 Identities=30% Similarity=0.399 Sum_probs=204.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccccc-CCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHH
Q 020573 58 KYSATLSDLKKWHNWAKALASSVRSTFA-DSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELY 136 (324)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 136 (324)
+++..+.++.++.+|+.......+..+. +.++ ...|++||++++++.+...+.+. .+..++.+..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~a~~ll~~~l~~~~~~l~~~-----~~~~l~~~~~~~~ 76 (307)
T PRK11805 8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGTDN------AWDEAVQLVLHALHLPLDIPEPF-----LDARLTPSEKARI 76 (307)
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCCccCCCCCC------HHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHH
Confidence 4456678888999998777654433211 1111 13689999999999875433311 1235666666777
Q ss_pred HHHHHHHh-cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 137 GLWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 137 ~~~~~r~~-~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
..+.+||. +|+|+|||+|+++|++++|+|+++|||||++|+.+++.++. ++ .. ....+|||+|||+|++++.++
T Consensus 77 ~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~---~~~~~VLDlG~GsG~iai~la 152 (307)
T PRK11805 77 LELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL-ED---PPVTRILDLCTGSGCIAIACA 152 (307)
T ss_pred HHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh-cc---CCCCEEEEEechhhHHHHHHH
Confidence 77778886 69999999999999999999999999999999999998765 33 11 112589999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccc
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP 294 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP 294 (324)
+.+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.++ .++||+||+||||++..++..++.++ +|||
T Consensus 153 ~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~-~~eP 228 (307)
T PRK11805 153 YAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEY-RHEP 228 (307)
T ss_pred HHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhh-ccCc
Confidence 986 7889999999999999999999999998889999999987654 25899999999999998888888888 5999
Q ss_pred cccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 RLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||+||.+|+++++.+++.+.++|+|||+
T Consensus 229 ~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 229 ELALAAGDDGLDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred cceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999999999999995
No 6
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00 E-value=9.7e-41 Score=312.65 Aligned_cols=242 Identities=31% Similarity=0.415 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.++++|+.......+..+. .+.+. ...|++||++++++.+...+.+. .+..++.+..+.+..+.+||.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~rr~ 72 (284)
T TIGR03533 3 TIRDFLRWAVSRFNAAGLFFG---HGTDN--AWDEAVYLVLHALHLPLDILEPF-----LDARLTPSEKERILELIERRI 72 (284)
T ss_pred cHHHHHHHHHHHHHhcCCccc---CCCCC--HHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence 456677777666554332110 00011 13689999999999875433311 123566666666777777776
Q ss_pred -cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE
Q 020573 145 -KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (324)
Q Consensus 145 -~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~ 222 (324)
.++|+|||+|+++|++++|.|++++||||++||.+++..+. ++ . ...+.+|||+|||+|++++.+++.. ++.+
T Consensus 73 ~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~---~~~~~~vLDlG~GsG~i~~~la~~~-~~~~ 147 (284)
T TIGR03533 73 EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL-E---PEPVKRILDLCTGSGCIAIACAYAF-PEAE 147 (284)
T ss_pred hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh-c---cCCCCEEEEEeCchhHHHHHHHHHC-CCCE
Confidence 79999999999999999999999999999999999988765 33 1 1234689999999999999999986 7789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
|+|+|+|+.|++.|++|++.+++.++++++++|+++.+. .++||+||+||||++..++..++.++ .|||+.||+||+
T Consensus 148 v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~ 224 (284)
T TIGR03533 148 VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGE 224 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCC
Confidence 999999999999999999999998889999999987653 25899999999999999888888888 699999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++.++.+++.+.++|+|||+
T Consensus 225 dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 225 DGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred cHHHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999995
No 7
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=315.18 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=182.7
Q ss_pred HHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchH
Q 020573 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (324)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~t 176 (324)
..|+++|++++++.++..+.+. .+..++.+..+.+..+.+||.+|+|+|||+|.++|+|++|.|++++|+|||+|
T Consensus 164 ~~dA~~LL~~~l~~~r~~l~~~-----~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT 238 (423)
T PRK14966 164 KNEARMLLQYASEYTRVQLLTR-----GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET 238 (423)
T ss_pred HHHHHHHHHHHHCcCHHHHhhC-----CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence 3689999999999875433311 12356777777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
|.+++.+++.+ . ++.+|||+|||||++++.+++.. ++.+|+|+|+|+.|++.|++|++.++. +++++++|+
T Consensus 239 E~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 239 EHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred HHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 99999998765 1 24589999999999999999875 788999999999999999999998875 699999999
Q ss_pred ccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++......++||+|||||||++..+...++.++ +|||+.||+||+||+++++++++.+.++|+|||+
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v-~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhh-hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 875322235899999999999988765555555 7999999999999999999999999999999995
No 8
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=100.00 E-value=1.4e-37 Score=286.44 Aligned_cols=197 Identities=31% Similarity=0.487 Sum_probs=172.7
Q ss_pred HHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchH
Q 020573 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (324)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~t 176 (324)
..|++||++++.. ...++.|.+||.+|+|+|||+|.++|++++|.+++++|+||++|
T Consensus 14 ~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~T 70 (251)
T TIGR03704 14 EDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRT 70 (251)
T ss_pred HHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccH
Confidence 4899999999731 24456677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
+.+++.++.++ .. .....+|||+|||+|++++.+++.+ +..+|+|+|+|+.|++.|++|++.++ ++++++|+
T Consensus 71 e~Lv~~~l~~~-~~--~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 71 EFLVDEAAALA-RP--RSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred HHHHHHHHHhh-cc--cCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 99999998865 21 1123589999999999999999886 66799999999999999999999876 47899999
Q ss_pred cccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.+.. ..++||+||+||||++.+++..+++++..|||..||+||.||++.++.+++.+.++|||||+
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 876532 23589999999999999988889999999999999999999999999999999999999995
No 9
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=2.1e-35 Score=274.12 Aligned_cols=231 Identities=37% Similarity=0.504 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.++.+|+...... ...++++|++++++.+.....+. .+..++.+..+.+..+..|+.
T Consensus 3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 61 (275)
T PRK09328 3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLLN-----PEEELTPEELERFRALVARRA 61 (275)
T ss_pred cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence 356777887665431 13689999999999875443321 122345444455666667778
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+++|++|++|..+|++..|.+++++|+||++||.+++.+.... ...++.+|||+|||+|++++.++..+ ++.+|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~ 136 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKER-PDAEVT 136 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999999999999999999988654 22345689999999999999999986 788999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG 304 (324)
|+|+|+.+++.|++|++ ++...++.++.+|+++.+. .++||+||+||||++...+..+.+++..|||..|+++|.+|
T Consensus 137 ~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g 213 (275)
T PRK09328 137 AVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG 213 (275)
T ss_pred EEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence 99999999999999998 4445579999999987654 36899999999999998888888999889999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
++.++.+++++.++|||||+
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred HHHHHHHHHHHHHhcccCCE
Confidence 99999999999999999995
No 10
>PLN02672 methionine S-methyltransferase
Probab=99.97 E-value=3.3e-31 Score=281.14 Aligned_cols=168 Identities=24% Similarity=0.290 Sum_probs=146.0
Q ss_pred EecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 153 ~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
.|.++|++++|.|.|+||||||+||.+++. +... . ....++.+|||+|||||++++.+++.+ ++.+|+|+|+|++|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A 154 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA 154 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence 488899999999999999999999999998 4332 1 111235689999999999999999986 77899999999999
Q ss_pred HHHHHHHHHHcCCC---------------CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccc---
Q 020573 233 AAVAAFNAQRYGLQ---------------DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP--- 294 (324)
Q Consensus 233 l~~Ar~N~~~~gl~---------------~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP--- 294 (324)
+++|++|++.++++ ++++++++|+++.+.....+||+||||||||+..++..|+++|..|||
T Consensus 155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~ 234 (1082)
T PLN02672 155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF 234 (1082)
T ss_pred HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence 99999999987542 579999999998764322479999999999999999999999988875
Q ss_pred ------cccccC---CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 ------RLALDG---GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ------~~aL~g---g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||+| |.|||++|++|++++.++|+|||+
T Consensus 235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 689987 499999999999999999999995
No 11
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.97 E-value=1e-30 Score=239.02 Aligned_cols=212 Identities=38% Similarity=0.564 Sum_probs=182.1
Q ss_pred HHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHH
Q 020573 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178 (324)
Q Consensus 99 e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~ 178 (324)
|+++|+++.++........+ ....+..+..+.+..+.+++..++|++|++|..+|++..+.+++++++|+++++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLLLH-----PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE 75 (251)
T ss_pred CHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence 46789999998763222111 1234556566667777778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+++.+ . ..+.+|||+|||+|.+++.+++.+ ++.+|+|+|+++.+++.|++|++.+++. +++++++|+++
T Consensus 76 l~~~~l~~~-~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 76 LVEAALERL-K----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred HHHHHHHhc-c----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 999988876 2 134589999999999999999986 7789999999999999999999999886 59999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. .++||+|++||||+...+...+..++..|||..++.+|.+|++.++.+++.+.++|+|||+
T Consensus 149 ~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 149 PLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred cCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 553 3689999999999998888888889989999999999999999999999999999999995
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.89 E-value=1e-22 Score=177.03 Aligned_cols=131 Identities=38% Similarity=0.614 Sum_probs=111.3
Q ss_pred eeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 161 l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++|...+|||.|+ +.|++|++.+... ...+|||+|||+|++++.+++.. ++.+|+++|+|+.|++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence 5788999999964 5788888877653 25689999999999999999985 7889999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
+|++.+++.+ ++++.+|+++.+. .++||+|++|||+. .++.+|++.++.++++|.+
T Consensus 73 ~n~~~n~~~~-v~~~~~d~~~~~~--~~~fD~Iv~NPP~~---------------------~~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 73 RNAERNGLEN-VEVVQSDLFEALP--DGKFDLIVSNPPFH---------------------AGGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp HHHHHTTCTT-EEEEESSTTTTCC--TTCEEEEEE---SB---------------------TTSHCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccc-ccccccccccccc--ccceeEEEEccchh---------------------cccccchhhHHHHHHHHHH
Confidence 9999999988 9999999998766 37999999999953 2345688999999999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||.
T Consensus 129 ~Lk~~G~ 135 (170)
T PF05175_consen 129 YLKPGGR 135 (170)
T ss_dssp HEEEEEE
T ss_pred hccCCCE
Confidence 9999994
No 13
>PRK14967 putative methyltransferase; Provisional
Probab=99.86 E-value=5.3e-21 Score=173.05 Aligned_cols=150 Identities=32% Similarity=0.461 Sum_probs=125.7
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
-+..+.+.+++|.|+.+++.+++.+...- ..++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|++
T Consensus 5 ~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 5 PPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred CCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHH
Confidence 36788999999999999999888765431 224569999999999999999885 33599999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
|++.+++ ++.++++|+.+.+. .++||+|++||||++..... .....|..++.++.+|...+..+++++.++
T Consensus 78 n~~~~~~--~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 78 NALLAGV--DVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHhCC--eeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 9998886 38999999987543 36899999999999765432 224567788889999999999999999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
||+||.
T Consensus 149 Lk~gG~ 154 (223)
T PRK14967 149 LAPGGS 154 (223)
T ss_pred cCCCcE
Confidence 999995
No 14
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.82 E-value=5.1e-20 Score=167.64 Aligned_cols=146 Identities=23% Similarity=0.343 Sum_probs=116.8
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
.+.+...+.++-..-++-+|..++.. ...++|||+|||+|.+++.+|++. ++++|+|||+++++.+.|++|
T Consensus 17 ~~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~n 87 (248)
T COG4123 17 QFFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRN 87 (248)
T ss_pred ceEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHH
Confidence 45556666777777777776665432 126799999999999999999986 669999999999999999999
Q ss_pred HHHcCCCCcEEEEEcccccccccCC-CCeeEEEEcCCCCCCCCc--ccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 240 AQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPYIPSDDI--SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l~~~~-~~fDlIVsNPPYi~~~~~--~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
++.+++.+|++++++|+.+..+... .+||+|||||||-..... ..-..+..+||...-+ ..+++.|.
T Consensus 88 v~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~l----------e~~i~~a~ 157 (248)
T COG4123 88 VALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDL----------EDLIRAAA 157 (248)
T ss_pred HHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCH----------HHHHHHHH
Confidence 9999999999999999987654432 369999999999987765 2334555677766543 48999999
Q ss_pred cccCCCCC
Q 020573 317 SMLKPDKW 324 (324)
Q Consensus 317 ~~LkpgG~ 324 (324)
++||+||.
T Consensus 158 ~~lk~~G~ 165 (248)
T COG4123 158 KLLKPGGR 165 (248)
T ss_pred HHccCCCE
Confidence 99999994
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.81 E-value=4.1e-19 Score=155.25 Aligned_cols=135 Identities=24% Similarity=0.402 Sum_probs=109.2
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
|++||++|.++.+.+.. . ++.+|||+|||+|.+++.+++.. + +|+|+|+|+++++.|++|++.++. +
T Consensus 1 ~~~~~~d~~~l~~~l~~-~-------~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~--~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLRE-L-------KPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNV--G 67 (179)
T ss_pred CCCCCccHHHHHHHHHh-c-------CCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 58999999776665432 2 24689999999999999999863 3 899999999999999999998876 4
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+|+++.. .++||+|++||||++..+.... ......++.+|.+|.+.++.+++++.++|||||.
T Consensus 68 ~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 68 LDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred eEEEEccccccc---CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 899999998753 2589999999999866532111 1223457778999999999999999999999994
No 16
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.7e-19 Score=152.25 Aligned_cols=147 Identities=25% Similarity=0.411 Sum_probs=125.4
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
.|+-|-.+|-++++.+.... .+........++|+|||||+++..+++..+++....++|+|+.|++..++.++.|+..
T Consensus 17 dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~- 94 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH- 94 (209)
T ss_pred hccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-
Confidence 78899999999999887655 3333333668999999999999999999989999999999999999999999999864
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..++.|+.+.+.. +++|+++.||||+++.+... ..+--..|+.||.+|.+.+.+++.+....|.|.|+
T Consensus 95 -~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~i-----~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv 163 (209)
T KOG3191|consen 95 -IDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEEI-----GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGV 163 (209)
T ss_pred -cceeehhHHhhhcc--CCccEEEECCCcCcCCcccc-----hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCce
Confidence 89999999998876 79999999999999876322 12223457889999999999999999999999996
No 17
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.77 E-value=3.7e-18 Score=165.33 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=105.6
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++++...+|||... ..|+++++.+.. ...++|||+|||+|.+++.+++.. |+.+|+++|+|+.|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56777889999984 457777665432 123589999999999999999985 889999999999999999
Q ss_pred HHHHHHcCCC--CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHH
Q 020573 237 AFNAQRYGLQ--DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314 (324)
Q Consensus 237 r~N~~~~gl~--~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~ 314 (324)
++|++.++.. .+++++.+|.++.+.. ++||+|+|||||+....+ . -+...+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~~~~~--~~fDlIlsNPPfh~~~~~---~------------------~~ia~~l~~~ 325 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHAL---T------------------DNVAWEMFHH 325 (378)
T ss_pred HHHHHHcCcccCceEEEEEccccccCCC--CCEEEEEECcCcccCccC---C------------------HHHHHHHHHH
Confidence 9999988754 3689999998875532 589999999999853221 0 1234578999
Q ss_pred HhcccCCCCC
Q 020573 315 TASMLKPDKW 324 (324)
Q Consensus 315 a~~~LkpgG~ 324 (324)
+.++|||||.
T Consensus 326 a~~~LkpGG~ 335 (378)
T PRK15001 326 ARRCLKINGE 335 (378)
T ss_pred HHHhcccCCE
Confidence 9999999994
No 18
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.77 E-value=1.1e-18 Score=141.19 Aligned_cols=108 Identities=28% Similarity=0.366 Sum_probs=86.3
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNPP 275 (324)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.|+..+++.++++++++|+++... ...++||+|++|||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999973 689999999999999999999999998889999999987652 22579999999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.+........ -+.+..+++.+.++|||||+
T Consensus 80 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~ 110 (117)
T PF13659_consen 80 YGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGV 110 (117)
T ss_dssp TTSBTT----G------------------GCHHHHHHHHHHHHEEEEEE
T ss_pred Cccccccchhh------------------HHHHHHHHHHHHHHcCCCeE
Confidence 98643211100 11566899999999999984
No 19
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.9e-18 Score=158.43 Aligned_cols=130 Identities=24% Similarity=0.412 Sum_probs=108.5
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++.|.-.+|||.-. ..|++|++.+.... .++|||+|||.|.+++.+++.. |+.+|+.+|+|..|++.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~--------~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDL--------GGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA 198 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccC--------CCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence 57788899999963 66888887655422 3489999999999999999986 899999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
|+|++.|++++. ++..+|.+++.. ++||.|||||||+...+. ..+.-.+|+.+|.
T Consensus 199 r~Nl~~N~~~~~-~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v---------------------~~~~~~~~i~~A~ 253 (300)
T COG2813 199 RKNLAANGVENT-EVWASNLYEPVE---GKFDLIISNPPFHAGKAV---------------------VHSLAQEIIAAAA 253 (300)
T ss_pred HHhHHHcCCCcc-EEEEeccccccc---ccccEEEeCCCccCCcch---------------------hHHHHHHHHHHHH
Confidence 999999999864 889999988765 499999999999844321 1234558999999
Q ss_pred cccCCCC
Q 020573 317 SMLKPDK 323 (324)
Q Consensus 317 ~~LkpgG 323 (324)
++|++||
T Consensus 254 ~~L~~gG 260 (300)
T COG2813 254 RHLKPGG 260 (300)
T ss_pred HhhccCC
Confidence 9999999
No 20
>PRK14968 putative methyltransferase; Provisional
Probab=99.77 E-value=6.6e-18 Score=147.42 Aligned_cols=141 Identities=26% Similarity=0.473 Sum_probs=115.6
Q ss_pred eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 020573 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245 (324)
Q Consensus 166 ~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl 245 (324)
++++|.|++++.++++.+.. .++.+|||+|||+|.++..++.. +.+|+|+|+|+++++.+++|+..+++
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 57899999999988887653 23568999999999999999986 47999999999999999999999888
Q ss_pred CCc-EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 246 QDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 246 ~~r-v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++ +.++++|+.+.+.. ++||+|++||||.+........ .....++.+|.+|.+.+..+++++.++|||||+
T Consensus 71 ~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 71 RNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEWD-----DWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred CCcceEEEeccccccccc--cCceEEEECCCcCCCCchhhhh-----hhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 655 89999999886543 4899999999998754322111 112456778889999999999999999999994
No 21
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.77 E-value=4.1e-18 Score=161.59 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=117.0
Q ss_pred cCeee-eeeCCccccc-chHHHHHHHHHHHhhhcC----CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 159 ~~l~~-~v~~~vliPr-p~te~lve~l~~~l~~~~----~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
+|+++ .+..+.+.|. |..--++.++.+++.... ......++||||||+|+++..++... ++++++|+|+++.|
T Consensus 72 ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~A 150 (321)
T PRK11727 72 YGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQA 150 (321)
T ss_pred cCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHH
Confidence 46764 6888999986 777778888877762211 11235689999999999999998875 68999999999999
Q ss_pred HHHHHHHHHHc-CCCCcEEEEE-c---ccccccccCCCCeeEEEEcCCCCCCCCcccc--hh---hhhccccc---c---
Q 020573 233 AAVAAFNAQRY-GLQDIIEIRQ-G---SWFGKLKDVEGKLSGVVSNPPYIPSDDISGL--QV---EVGKHEPR---L--- 296 (324)
Q Consensus 233 l~~Ar~N~~~~-gl~~rv~~~~-g---D~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l--~~---ev~~~eP~---~--- 296 (324)
++.|++|++.+ ++.++|++++ . ++++.+....++||+|+|||||..+.+.... +. ...+|.+. +
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~ 230 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFG 230 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCc
Confidence 99999999999 8998998864 2 3343332224689999999999987654211 11 12223221 1
Q ss_pred ------cccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 297 ------ALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 297 ------aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-..||+ +.++.++++++..+++..||
T Consensus 231 g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gw 262 (321)
T PRK11727 231 GQQAELWCEGGE--VAFIKRMIEESKAFAKQVLW 262 (321)
T ss_pred chhhheeeCCcE--eeeehHhhHHHHHHHhhCcE
Confidence 113444 67888899998888887775
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.73 E-value=4.8e-17 Score=144.93 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=98.8
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
|.+.=||+|.. |+|+.+.+.++.-. ||.++.+.+.+++++ .. ...+.+|||+|||+|++++.++... ..+|++
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l-~~--~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~ 81 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWL-AP--VIVDARCLDCFAGSGALGLEALSRY--AAGATL 81 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHH-hh--hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEE
Confidence 33345788766 78999988554322 999999999998877 21 1245699999999999999755542 369999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
+|+++.+++.|++|++.+++. +++++++|+++.+....++||+|++||||..
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 999999999999999999986 5999999998765433357999999999964
No 23
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.73 E-value=5.5e-17 Score=155.78 Aligned_cols=130 Identities=22% Similarity=0.333 Sum_probs=104.6
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++.+...+++|.+. ..|+++++.+... ..++|||+|||+|.+++.+++.. ++.+|+++|+|+.|++.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS 236 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56778889999974 4567777654421 24589999999999999999985 778999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
++|++.+++. .+++.+|.++.. .++||+||+||||+... ....+..+.++.++.
T Consensus 237 ~~nl~~n~l~--~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~---------------------~~~~~~~~~~i~~a~ 290 (342)
T PRK09489 237 RATLAANGLE--GEVFASNVFSDI---KGRFDMIISNPPFHDGI---------------------QTSLDAAQTLIRGAV 290 (342)
T ss_pred HHHHHHcCCC--CEEEEccccccc---CCCccEEEECCCccCCc---------------------cccHHHHHHHHHHHH
Confidence 9999999875 577888887643 46899999999997321 112456778999999
Q ss_pred cccCCCCC
Q 020573 317 SMLKPDKW 324 (324)
Q Consensus 317 ~~LkpgG~ 324 (324)
++|||||.
T Consensus 291 ~~LkpgG~ 298 (342)
T PRK09489 291 RHLNSGGE 298 (342)
T ss_pred HhcCcCCE
Confidence 99999994
No 24
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.69 E-value=4.8e-16 Score=154.33 Aligned_cols=126 Identities=23% Similarity=0.236 Sum_probs=105.9
Q ss_pred cCCCceeEEec--------ccccCeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 145 ~~~pl~yi~g~--------~~f~~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
+++|.+|+.|. .+|+++.|.++++.|++ +..++.+++.+++++ ...++.+|||+|||+|.+++.++
T Consensus 241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHH
Confidence 46789999886 24778999999999986 567899999999887 22345799999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCCC
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~ 278 (324)
+.. .+|+|+|+|++|++.|++|++.+++.+ ++++++|+.+.+.. ..++||+|++||||..
T Consensus 317 ~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 317 RQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG 379 (443)
T ss_pred HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC
Confidence 874 699999999999999999999999864 99999999765432 1357999999999974
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=8.5e-16 Score=123.08 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+++++.|++|+...+..++++++++|+ .......++||+|+++-
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence 5699999999999999999975 78999999999999999999998888888999999999 22223346899999964
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. . .+-+ .++..+.+++.+.++|+|||+
T Consensus 79 ~~----~--------~~~~---------~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 79 FT----L--------HFLL---------PLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp GS----G--------GGCC---------HHHHHHHHHHHHHHHEEEEEE
T ss_pred Cc----c--------cccc---------chhHHHHHHHHHHHhcCCCcE
Confidence 31 0 0000 124456789999999999995
No 26
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.9e-15 Score=141.15 Aligned_cols=154 Identities=23% Similarity=0.392 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhcCCCceeEEecccccC-------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 020573 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (324)
Q Consensus 132 ~~~~~~~~~~r~~~~~pl~yi~g~~~f~~-------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VLD 201 (324)
.++|.+.|++.+.--+--..++-...|+. ..+.++||+-+- +|.|.+.++++.+.. .++.++||
T Consensus 95 e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlD 168 (300)
T COG2264 95 EEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLD 168 (300)
T ss_pred hHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCEEEE
Confidence 47888888765532222223444556663 347788887774 589999999988876 25779999
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCC
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~ 281 (324)
+|||||.++++.++. ...+|+|+|++|.|++.|++|+++|++...++....+..+... .++||+||+|=
T Consensus 169 vGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--~~~~DvIVANI------- 237 (300)
T COG2264 169 VGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--NGPFDVIVANI------- 237 (300)
T ss_pred ecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--cCcccEEEehh-------
Confidence 999999999999995 4578999999999999999999999987533333333322222 25999999981
Q ss_pred cccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 282 ~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. +.+..+...+.+.|||||+
T Consensus 238 ----LA------------------~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 238 ----LA------------------EVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred ----hH------------------HHHHHHHHHHHHHcCCCce
Confidence 11 2344678888999999985
No 27
>PHA03411 putative methyltransferase; Provisional
Probab=99.65 E-value=1.3e-15 Score=140.72 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=91.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
.++|||+|||+|.+++.+++.. +..+|+|+|+|+.|++.|++|. ++++++++|+.+... .++||+||+|||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--NEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--cCCCcEEEEcCC
Confidence 4689999999999999998874 4579999999999999999873 258999999987543 368999999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHH--HHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~--~~il~~a~~~LkpgG~ 324 (324)
|...... ..+...+..||+.|.+.+ ..++..+..+|+|+|.
T Consensus 136 F~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~ 178 (279)
T PHA03411 136 FGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGS 178 (279)
T ss_pred ccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCce
Confidence 9864321 112225677899999985 8999999999999994
No 28
>PHA03412 putative methyltransferase; Provisional
Probab=99.65 E-value=6.7e-16 Score=139.80 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+.+|||+|||+|.+++.++++.. +..+|+|+|+++.|+++|++|+. ++.++++|+.... ..++||+||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--FDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--ccCCccEEEEC
Confidence 56999999999999999998641 35699999999999999998853 3889999987532 24689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccc-cCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLAL-DGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL-~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|||.+... +. .+..+|+.....+++.|.+++++|+
T Consensus 122 PPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 122 PPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred CCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99986331 11 2336789999999999999888876
No 29
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=1.4e-15 Score=150.96 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=109.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.++.+.++..++..+++ ..++.+|||+|||+|..++.+++..+++++|+|+|+++.+++.+++|++++|+.
T Consensus 229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4556666666665554443 124568999999999999999998656789999999999999999999999997
Q ss_pred CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHH----HHHHHHHHHhcccCCC
Q 020573 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASMLKPD 322 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~----~~~~il~~a~~~Lkpg 322 (324)
+ ++++++|+.+......++||+|++||||...+.+ ++.|...+....+++. ..+.+++.+.++||||
T Consensus 302 ~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 302 N-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVI--------RRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred e-EEEEeCCcccccchhcccCCEEEEcCCCCCCeee--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6 9999999977543233689999999999754432 4556655555444443 3468999999999999
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|.
T Consensus 373 G~ 374 (444)
T PRK14902 373 GI 374 (444)
T ss_pred CE
Confidence 95
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=1.5e-15 Score=151.84 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=112.2
Q ss_pred cCChhHHHHHHHHHHHHhcCCCcee----EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEE
Q 020573 127 RLRIGLDELYGLWKQRIEKRKPFQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202 (324)
Q Consensus 127 ~l~~~~~~~~~~~~~r~~~~~pl~y----i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDL 202 (324)
.+..+..+.+..+.+| +|| |+|...|++..|.+.+++. +|+.+++.+. + .++.+|||+
T Consensus 212 ~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDi 273 (475)
T PLN02336 212 KVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDV 273 (475)
T ss_pred eecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEE
Confidence 3443333444444444 899 9999999999999999887 6777776543 1 235699999
Q ss_pred cCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCc
Q 020573 203 GTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 203 GcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~ 282 (324)
|||+|++++.+++.+ +.+|+|+|+|+.+++.|++|+. +...++++.++|+.+.. ...++||+|+++--
T Consensus 274 GcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~------- 341 (475)
T PLN02336 274 GCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-YPDNSFDVIYSRDT------- 341 (475)
T ss_pred eccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-CCCCCEEEEEECCc-------
Confidence 999999999999875 5799999999999999999876 44457999999998642 12468999999522
Q ss_pred ccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 283 ~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..|-+ ....+++++.+.|||||+
T Consensus 342 -------l~h~~------------d~~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 342 -------ILHIQ------------DKPALFRSFFKWLKPGGK 364 (475)
T ss_pred -------ccccC------------CHHHHHHHHHHHcCCCeE
Confidence 23322 123688999999999995
No 31
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.61 E-value=6.6e-15 Score=140.83 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+..+.+...+.+.. ...++.+|||+|||+|.+++.++.. +.+|+|+|+++.|++.|+.|++.+|+.+ +.+.+
T Consensus 165 ~l~~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 165 SMDPKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CCCHHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEe
Confidence 33344455444443 2234678999999999999987764 4799999999999999999999999987 99999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+ ++...++||+|++||||....... +....+.+..+++.+.++|||||+
T Consensus 237 ~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 237 GDATK-LPLSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred cchhc-CCcccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcE
Confidence 99987 332246899999999997533210 112236678999999999999995
No 32
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.61 E-value=3.6e-15 Score=145.74 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccC---CCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~---~~~fDlI 270 (324)
++++|||+|||+|++++.++.. ...+|+++|+|+.+++.|++|++.+++. ++++++++|+++.+... .++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3679999999999999987753 4569999999999999999999999986 47999999999865431 3589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+||||..... . ++. .++..|..++..+.++|+|||+
T Consensus 298 ilDPP~f~~~k-----~---------~l~---~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 298 VMDPPKFVENK-----S---------QLM---GACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred EECCCCCCCCh-----H---------HHH---HHHHHHHHHHHHHHHHcCCCeE
Confidence 99999975431 0 111 2355688899999999999995
No 33
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.60 E-value=6.2e-15 Score=138.53 Aligned_cols=130 Identities=30% Similarity=0.485 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhcCCCceeEEecccccC-------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~-------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
+.++|.+.|++.+..-+--..+.-...|.. ..+.++|++-+- +|.|.+.++.+.+.. .++.+||
T Consensus 93 ~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vL 166 (295)
T PF06325_consen 93 EEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVL 166 (295)
T ss_dssp -HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEE
T ss_pred ccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEE
Confidence 457788899877632211122333444532 346677776664 588999999888765 2456999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
|+|||||.++++.++. ...+|+|+|+++.|++.|++|++.|++.+++.+. ...+ . ..++||+|++|
T Consensus 167 DvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~-~--~~~~~dlvvAN 232 (295)
T PF06325_consen 167 DVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED-L--VEGKFDLVVAN 232 (295)
T ss_dssp EES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-T--CCS-EEEEEEE
T ss_pred EeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-c--ccccCCEEEEC
Confidence 9999999999999995 3468999999999999999999999999877663 1111 1 23799999998
No 34
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.59 E-value=5e-15 Score=154.57 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++++|||+|||+|.+++.+++. ...+|+++|+|+.|++.|++|++.+++. ++++++++|+++.+....++||+||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3579999999999999999985 3457999999999999999999999987 689999999988664444689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|||...... +. . -.++...|..++..+.++|+|||+
T Consensus 616 PP~f~~~~~--~~-~------------~~~~~~~y~~l~~~a~~lL~~gG~ 651 (702)
T PRK11783 616 PPTFSNSKR--ME-D------------SFDVQRDHVALIKDAKRLLRPGGT 651 (702)
T ss_pred CCCCCCCCc--cc-h------------hhhHHHHHHHHHHHHHHHcCCCCE
Confidence 999864321 00 0 013466788999999999999995
No 35
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.58 E-value=1.8e-14 Score=133.79 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.+.+......++..+++ ..++.+|||+|||+|..++.+++..+..+.|+|+|+++.+++.+++|++++|+.
T Consensus 50 ~G~~~~qd~~s~~~~~~l~-------~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 50 SGLYYIQEASSMIPPLALE-------PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred CCeEEEECHHHHHHHHHhC-------CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 3445555555555544332 234679999999999999999998755679999999999999999999999986
Q ss_pred CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCC
Q 020573 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPD 322 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~Lkpg 322 (324)
+ ++++++|..... ...++||.|++|||+...+.+ +++|...+.-..+-+ ...+.+++.|.++||||
T Consensus 123 ~-v~~~~~D~~~~~-~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 123 N-VAVTNFDGRVFG-AAVPKFDAILLDAPCSGEGVI--------RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred c-EEEecCCHHHhh-hhccCCCEEEEcCCCCCCccc--------ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5 999999976532 223579999999999755443 344444322222222 23467999999999999
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|+
T Consensus 193 G~ 194 (264)
T TIGR00446 193 GV 194 (264)
T ss_pred CE
Confidence 95
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=1.4e-14 Score=127.25 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.+++.++... ++++|+|+|.|+.+++.+++|++++++.+ ++++++|+.+. . ..++||+|++|.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-Q-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-c-ccCCccEEEehh
Confidence 46799999999999999999864 77899999999999999999999999864 99999999774 2 246899999973
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ..+..+++.+.++|+|||.
T Consensus 118 -~-----------------------------~~~~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 118 -L-----------------------------ASLNVLLELTLNLLKVGGY 137 (181)
T ss_pred -h-----------------------------hCHHHHHHHHHHhcCCCCE
Confidence 1 1122466777899999984
No 37
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.57 E-value=2e-14 Score=136.69 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=92.7
Q ss_pred ccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 158 f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+.+..|.+.++.|++. ..++.+++.+.+++ . ...+.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~---~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~ 210 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-R---ELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC 210 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 4567899999999975 45677888888776 2 223579999999999999999985 3799999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++. +++++++|+.+......++||+|++|||+.
T Consensus 211 A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 211 AKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred HHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 99999999984 699999999765432335799999999975
No 38
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=1.8e-14 Score=142.53 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.++...+++++|+|+|+++.+++.+++|+++.|+.+ +++.++|..+......++||.|++||
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECC
Confidence 46799999999999999999987667899999999999999999999999865 99999998763222346899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcH-HHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~ 324 (324)
||...+.+. ..+++..+.+... ..++ ...++++..+.++|||||+
T Consensus 316 PCsg~G~~~-~~p~~~~~~~~~~----~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 316 PCTSLGTAR-NHPEVLRRVNKED----FKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred CCCCCcccc-CChHHHHhCCHHH----HHHHHHHHHHHHHHHHHhcCCCCE
Confidence 998776542 2344433322211 1122 2557899999999999995
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=1.5e-14 Score=122.86 Aligned_cols=102 Identities=27% Similarity=0.336 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
.+.+|||+|||+|.++..+++...++.+|+|+|+|+++++.|+++++.+++. +++|.++|+.+ +.. ..++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccccCCCeeEEEEc
Confidence 3569999999999999999965557899999999999999999999999998 69999999998 542 12689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++.. +.....+++.+.++||+||+
T Consensus 81 ~~l~~--------------------------~~~~~~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 81 GVLHH--------------------------FPDPEKVLKNIIRLLKPGGI 105 (152)
T ss_dssp STGGG--------------------------TSHHHHHHHHHHHHEEEEEE
T ss_pred Cchhh--------------------------ccCHHHHHHHHHHHcCCCcE
Confidence 77621 11223578888999999884
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.57 E-value=7.6e-14 Score=131.17 Aligned_cols=152 Identities=24% Similarity=0.467 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCCCce-eEEeccccc-------CeeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 132 LDELYGLWKQRIEKRKPFQ-YLVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 132 ~~~~~~~~~~r~~~~~pl~-yi~g~~~f~-------~l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
.++|.+.|++.+.. .++. +++-...|. ...+.++|+..+. ++.|.+..+.+.... .++.+||
T Consensus 92 ~~dW~~~w~~~~~p-~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VL 164 (288)
T TIGR00406 92 SKDWERAWKDNFHP-VQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVI 164 (288)
T ss_pred hhhHHHHHHHhCCC-EEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEE
Confidence 47888999887633 2222 233334442 2456677877664 466777666655433 2457999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCC
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
|+|||+|.+++.+++. ...+|+|+|+|+.|++.|++|+..+++.+++.+..++.... ..++||+|++|..
T Consensus 165 DvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVvan~~----- 234 (288)
T TIGR00406 165 DVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIVANIL----- 234 (288)
T ss_pred EeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEEEecC-----
Confidence 9999999999998874 34699999999999999999999999988888888774332 2368999999842
Q ss_pred CcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 281 ~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+..++.++.++|||||+
T Consensus 235 ------------------------~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 235 ------------------------AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCcE
Confidence 12234678888999999985
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=3.1e-14 Score=125.71 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=81.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.+++.+++.. ++++|+|+|+++++++.|++|++.+++.+ ++++++|..+. .. .++||+|++|-
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~-~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEF-GQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhC-CC-CCCccEEEEcc-
Confidence 6799999999999999999875 78999999999999999999999999876 99999998773 33 56899999961
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...+..+++.+.++|||||+
T Consensus 121 -----------------------------~~~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 121 -----------------------------VASLSDLVELCLPLLKPGGR 140 (187)
T ss_pred -----------------------------ccCHHHHHHHHHHhcCCCeE
Confidence 01134688999999999995
No 42
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=4e-14 Score=140.68 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=106.9
Q ss_pred eeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 164 ~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
....|.++.+..+..++-.++. ..++.+|||+|||+|..++.+++..+..++|+|+|+|+.+++.+++|++++
T Consensus 226 ~~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 226 FLKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred HHhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 3456666766666665554443 224679999999999999999987655679999999999999999999999
Q ss_pred CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHH----HHHHHHHHHhccc
Q 020573 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASML 319 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~----~~~~il~~a~~~L 319 (324)
|+. +++++++|+.+... .++||+|++|||+.....+. ..|...+....+.+. ..+.++..+.++|
T Consensus 299 g~~-~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~--------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l 367 (445)
T PRK14904 299 GIT-IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG--------RRAELRWKLTPEKLAELVGLQAELLDHAASLL 367 (445)
T ss_pred CCC-eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 986 49999999877543 35899999999998765432 233333222222232 3467999999999
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
||||+
T Consensus 368 kpgG~ 372 (445)
T PRK14904 368 KPGGV 372 (445)
T ss_pred CCCcE
Confidence 99995
No 43
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.54 E-value=4.3e-14 Score=137.53 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=91.6
Q ss_pred ccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 158 f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+.|..|.++++.|++- ...+.+++.+.+++ . ...+.+|||+|||+|.+++.++.. ..+|+|+|+++.|++.
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~---~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-R---EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC 270 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence 4467899999999974 55677777777765 2 123468999999999999999974 3689999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++. +++++++|+.+.+....++||+||.||||.
T Consensus 271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 271 AQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred HHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 99999999986 599999999765433234699999999985
No 44
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.54 E-value=6.5e-14 Score=122.86 Aligned_cols=126 Identities=24% Similarity=0.233 Sum_probs=90.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHH
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~---------V~gvDis~~al~~Ar~N~~~ 242 (324)
|.+..+.+...++... ...++..++|..||||.+.+..+... .+.. ++|+|+++++++.|++|++.
T Consensus 9 ~a~L~~~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp STSS-HHHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4455566666666554 22346789999999999999998875 4545 99999999999999999999
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp 321 (324)
.++.+.+.+.++|+.+.- ...+.+|.||+||||...-.. . .+.-++|+.+++++.++|++
T Consensus 84 ag~~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~---~---------------~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGS---K---------------KDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp TT-CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCH---H---------------HHHHHHHHHHHHHHHCHSTT
T ss_pred cccCCceEEEecchhhcc-cccCCCCEEEECcchhhhccC---H---------------HHHHHHHHHHHHHHHHHCCC
Confidence 999988999999998743 335789999999999743210 0 11246788999999999987
No 45
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=7.2e-14 Score=138.21 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||+|||+|..++.+++.. ++++|+|+|+++.+++.+++|++++|+. ++++++|..+.... ..++||.|++|
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEEC
Confidence 46799999999999999999985 5579999999999999999999999874 78999998764221 13579999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
|||...+.+ ++.|...+......+ +..+.+++.+.++|||||+
T Consensus 321 ~Pcs~~G~~--------~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 321 APCSATGVI--------RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred CCCCccccc--------ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 999865433 233443333222222 4457899999999999995
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.54 E-value=1.9e-13 Score=110.80 Aligned_cols=99 Identities=27% Similarity=0.360 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|+|+|||+|.++..+++.+ ++.+|+|+|+++.+++.|++|++.+++. +++++.+|.........++||+|++..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence 35699999999999999999986 6689999999999999999999998876 499999987643333346899999842
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. ..+..+++.+.+.|||||+
T Consensus 97 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 97 SG-----------------------------GLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred cc-----------------------------hhHHHHHHHHHHHcCCCCE
Confidence 11 1234789999999999995
No 47
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.53 E-value=9.5e-14 Score=123.40 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|++.+++.+++.++.+|..+.+....++||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 34457799999999999999999876566899999999999999999999999767799999998775444446899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.. ...+..+++.+.+.|||||+
T Consensus 117 ~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 117 IGGG-----------------------------SEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred ECCC-----------------------------cccHHHHHHHHHHHcCCCcE
Confidence 8631 11234678888999999984
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=1.9e-13 Score=122.30 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.++..+.+.+ ...++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++|++.+++.++++++.+|..
T Consensus 59 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 59 HMVAMMCELI----EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHhc----CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3455555554 223467999999999999999999875567999999999999999999999998878999999998
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
+.+.. .++||+|+++-.
T Consensus 135 ~~~~~-~~~fD~Ii~~~~ 151 (205)
T PRK13944 135 RGLEK-HAPFDAIIVTAA 151 (205)
T ss_pred cCCcc-CCCccEEEEccC
Confidence 76543 468999999743
No 49
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=2.6e-13 Score=125.02 Aligned_cols=148 Identities=27% Similarity=0.408 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHhcCCCceeEEecccccC------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VLD 201 (324)
+.++|.+.|++....-+--..+.-...|.. ..+.++|++-+- .+.|..+++.+.... ..+.+|||
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD 125 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD 125 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence 346788889877643222223333344432 234555554443 466777777666543 24679999
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCC
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~ 281 (324)
+|||+|.+++.+++. + ..+|+|+|+|+.+++.|++|++.+++.+++.+..+|. +||+|++|.-
T Consensus 126 iGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vvani~------ 188 (250)
T PRK00517 126 VGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVANIL------ 188 (250)
T ss_pred eCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEEcCc------
Confidence 999999999987774 3 3479999999999999999999998865566555432 7999999831
Q ss_pred cccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 282 ~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+..++.++.++|||||+
T Consensus 189 -----------------------~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 189 -----------------------ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred -----------------------HHHHHHHHHHHHHhcCCCcE
Confidence 12234678889999999995
No 50
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.52 E-value=2e-14 Score=126.58 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=86.3
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+...++ -.-||.+..+-+.+.+++ ... ...+.+||||+||||++++....+ ...+|+.||.|+.++...
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL-~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 7 KYKGRKLKTPKG-DNTRPTTDRVREALFNIL-QPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKII 81 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHH-HCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred ecCCCEecCCCC-CCcCCCcHHHHHHHHHHh-ccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHH
Confidence 467777776655 344888888889888888 322 246789999999999999998886 457999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIP 278 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~ 278 (324)
++|++..++.++++++.+|.+..+... ..+||+|+.+|||..
T Consensus 82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK 126 (183)
T ss_dssp HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTS
T ss_pred HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCccc
Confidence 999999999888999999987765432 468999999999974
No 51
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=1.8e-13 Score=123.20 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.++..+++.+ ...++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|++++++. +++++.+|..
T Consensus 64 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~ 138 (215)
T TIGR00080 64 HMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcc
Confidence 3455555555 2345679999999999999999998755678999999999999999999999985 5999999998
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
+.... .++||+|+++++
T Consensus 139 ~~~~~-~~~fD~Ii~~~~ 155 (215)
T TIGR00080 139 QGWEP-LAPYDRIYVTAA 155 (215)
T ss_pred cCCcc-cCCCCEEEEcCC
Confidence 75443 358999999865
No 52
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=8.8e-14 Score=126.68 Aligned_cols=101 Identities=19% Similarity=0.292 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||||-+++.+++..+ .++|+|+|+|+.|++.|++.+...+..+ ++|+++|+.+ ++..+.+||+|.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~- 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN-LPFPDNSFDAVTIS- 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh-CCCCCCccCEEEee-
Confidence 578999999999999999999974 8999999999999999999999988887 9999999987 55557899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| ..++ +..+...|+++.|+|||||.
T Consensus 127 -f------------glrn------------v~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 127 -F------------GLRN------------VTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred -e------------hhhc------------CCCHHHHHHHHHHhhcCCeE
Confidence 1 1122 23456889999999999993
No 53
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.50 E-value=1.7e-13 Score=135.47 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
++.+|||+|||+|..++.+++.. ++++|+|+|+++++++.+++|++++|+..++.+..+|..+... ...++||.|++|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46799999999999999999987 4789999999999999999999999987445557788754321 013579999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
||+...+.+ ++.|.+.+....+.+ ...+.++..|.++|||||+
T Consensus 317 aPcSg~G~~--------~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 317 APCSATGVI--------RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred CCCCCCccc--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999877654 334443333222222 3347899999999999995
No 54
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.50 E-value=1.1e-13 Score=126.47 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
++..+...+.... ++++|||+|||+|+.++.++...+++++|+++|+++++++.|++|++++|+.++++++.+
T Consensus 55 ~~g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g 127 (234)
T PLN02781 55 DEGLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS 127 (234)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 3444455544433 366999999999999999999876688999999999999999999999999999999999
Q ss_pred ccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+.+..+ .++||+|+.|.+- ..|..+++.+.++|+|||+
T Consensus 128 da~~~L~~l~~~~~~~~fD~VfiDa~k-----------------------------~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 128 DALSALDQLLNNDPKPEFDFAFVDADK-----------------------------PNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred cHHHHHHHHHhCCCCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCeE
Confidence 998765432 3689999996220 1233567888899999985
No 55
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.50 E-value=7.9e-14 Score=127.23 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||||.++..+++..+++++|+|+|+|+.|++.|++.++..+.. +|+++++|..+ ++..+++||+|++-
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~-lp~~d~sfD~v~~~- 123 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAED-LPFPDNSFDAVTCS- 123 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-TT-EEEEEEE-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHH-hcCCCCceeEEEHH-
Confidence 4679999999999999999998777889999999999999999999998876 69999999977 44446899999982
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| ..++-| ...+.++++.++|||||.
T Consensus 124 -f------------glrn~~------------d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 124 -F------------GLRNFP------------DRERALREMYRVLKPGGR 148 (233)
T ss_dssp -S-------------GGG-S------------SHHHHHHHHHHHEEEEEE
T ss_pred -h------------hHHhhC------------CHHHHHHHHHHHcCCCeE
Confidence 0 112111 234688999999999994
No 56
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.3e-13 Score=118.42 Aligned_cols=96 Identities=30% Similarity=0.471 Sum_probs=75.5
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
+|.+.+..++..+. + .....+..|+|+|||||.+++.++.. + ..+|+|+|++++|++.+++|+.+. ..++.
T Consensus 26 Tp~~~Aa~il~~a~--~---~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l--~g~v~ 96 (198)
T COG2263 26 TPAPLAAYILWVAY--L---RGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEEL--LGDVE 96 (198)
T ss_pred CChHHHHHHHHHHH--H---cCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhh--CCceE
Confidence 34455555554443 1 13456778999999999999999885 3 479999999999999999999983 35699
Q ss_pred EEEcccccccccCCCCeeEEEEcCCCCCC
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVsNPPYi~~ 279 (324)
|+.+|..+. .+++|.+++||||...
T Consensus 97 f~~~dv~~~----~~~~dtvimNPPFG~~ 121 (198)
T COG2263 97 FVVADVSDF----RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred EEEcchhhc----CCccceEEECCCCccc
Confidence 999998653 4789999999999754
No 57
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.49 E-value=1.9e-13 Score=135.30 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCceeEEecccc----cCeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC
Q 020573 147 KPFQYLVGCEHW----RDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK 220 (324)
Q Consensus 147 ~pl~yi~g~~~f----~~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~ 220 (324)
++...+.|+..+ .+..|.++++.|++ +..++.+++.+.+++ ...++.+|||+|||+|.+++.+++..
T Consensus 242 ~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l----~~~~~~~vLDl~cG~G~~sl~la~~~--- 314 (431)
T TIGR00479 242 EETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL----ELQGEELVVDAYCGVGTFTLPLAKQA--- 314 (431)
T ss_pred CceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh----ccCCCCEEEEcCCCcCHHHHHHHHhC---
Confidence 455566665433 37789999999997 356788888888776 22345689999999999999999874
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCC
Q 020573 221 GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 221 ~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi 277 (324)
.+|+|+|+++.|++.|++|++.+++. +++++++|+.+.+.. ..++||+|+.|||+.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~ 373 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK 373 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC
Confidence 58999999999999999999999986 599999998764332 124799999999985
No 58
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=3.6e-13 Score=133.54 Aligned_cols=121 Identities=22% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---cCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---~~~~~fDlIV 271 (324)
++.+|||+|||+|..++.+++..+..++|+|+|+++.+++.+++|++++|+.+ ++++++|..+... ...++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEE
Confidence 46799999999999999999986556799999999999999999999999975 9999999876431 1236899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
+|||+...+.+ ++.|...+.-..+.+ ...+.+++.+.++|||||.
T Consensus 331 ~DaPCSg~G~~--------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 331 LDAPCSGLGTL--------HRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred EeCCCCccccc--------ccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 99998754433 333433222222222 2246899999999999994
No 59
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=4.3e-13 Score=128.91 Aligned_cols=102 Identities=25% Similarity=0.285 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|+++++..++.++++++++|+.+. +...++||+|+++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence 356799999999999999999975 5799999999999999999999999888899999998763 3234789999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +..|-|. ...+++++.++|||||+
T Consensus 194 ~--------------~~~h~~d------------~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 194 E--------------SGEHMPD------------KRKFVQELARVAAPGGR 218 (340)
T ss_pred C--------------chhccCC------------HHHHHHHHHHHcCCCcE
Confidence 1 2233221 23688999999999994
No 60
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.48 E-value=2.1e-13 Score=120.61 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=92.3
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.+..+...++.. -||.+..+.+.+..++ .. ...+.++||+|||||.+++.++.+. ..+|+++|+++.+++.+
T Consensus 15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l-~~--~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNIL-RP--EIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTL 88 (189)
T ss_pred hhCCcccCCCCCCC-CCCchHHHHHHHHHHH-HH--hcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHH
Confidence 46677777666543 4788888888877776 21 2346799999999999999999972 35899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIP 278 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~ 278 (324)
++|++.+++.++++++++|.++.+... ...||+|+.+|||..
T Consensus 89 ~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 89 KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC
Confidence 999999998878999999997754322 124899999999963
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=7.2e-13 Score=116.51 Aligned_cols=96 Identities=25% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|++++++. +++++.+|....+ .++||+|+++-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~---~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL---PGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc---CcCCCEEEECC
Confidence 56799999999999999999985 7789999999999999999999999875 5999999975433 35899999852
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. ..+..+++.+.++|+|||+
T Consensus 106 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 106 SG-----------------------------GNLTAIIDWSLAHLHPGGR 126 (187)
T ss_pred Cc-----------------------------cCHHHHHHHHHHhcCCCeE
Confidence 10 0123578888999999984
No 62
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.47 E-value=5.9e-13 Score=124.68 Aligned_cols=159 Identities=22% Similarity=0.372 Sum_probs=82.3
Q ss_pred cCeee-eeeCCccccc-chHHHHHHHHHHHhhhcCCC-CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 159 ~~l~~-~v~~~vliPr-p~te~lve~l~~~l~~~~~~-~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+|+.+ .+.++.|.|. |..--++.++.+++...... ....++||+|||..||--.|+... .+++++|+|+++.+++.
T Consensus 63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~ 141 (299)
T PF05971_consen 63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLES 141 (299)
T ss_dssp H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHH
T ss_pred cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHH
Confidence 46766 7899999997 77777888888877322111 124689999999998864444443 47999999999999999
Q ss_pred HHHHHHHc-CCCCcEEEEEc----ccccccccCCCCeeEEEEcCCCCCCCCcccch--hhh---hc-----ccccccccC
Q 020573 236 AAFNAQRY-GLQDIIEIRQG----SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQ--VEV---GK-----HEPRLALDG 300 (324)
Q Consensus 236 Ar~N~~~~-gl~~rv~~~~g----D~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~--~ev---~~-----~eP~~aL~g 300 (324)
|++|+++| +++++|+++.. +++..+....+.||+.+|||||..+.+...-. ... .+ ..|..+..|
T Consensus 142 A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G 221 (299)
T PF05971_consen 142 ARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTG 221 (299)
T ss_dssp HHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS-------------------------------
T ss_pred HHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCC
Confidence 99999999 99999999865 34554444446899999999998775432111 000 01 246666555
Q ss_pred CCCc-------HHHHHHHHHHHhcc
Q 020573 301 GVDG-------LDYLLHLCNGTASM 318 (324)
Q Consensus 301 g~dG-------l~~~~~il~~a~~~ 318 (324)
...- +.++.++++++..+
T Consensus 222 ~~~El~~~GGEv~FV~rMI~ES~~~ 246 (299)
T PF05971_consen 222 QSNELWCEGGEVAFVKRMIKESLQL 246 (299)
T ss_dssp -TTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred CcceEEcCCccHHHHHHHHHHHHHh
Confidence 4322 67888888887643
No 63
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.45 E-value=1.6e-12 Score=117.62 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.+++.++|+|+|+++++++.|++|++..++. +++++++|..+. ....++||+|+++-
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcC-CCCCCCccEEEEec
Confidence 4679999999999999999998767789999999999999999999888874 699999998763 22246899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. +-+ .+..+++++.+.|+|||+
T Consensus 123 ~l~--------------~~~------------~~~~~l~~~~~~Lk~gG~ 146 (231)
T TIGR02752 123 GLR--------------NVP------------DYMQVLREMYRVVKPGGK 146 (231)
T ss_pred ccc--------------cCC------------CHHHHHHHHHHHcCcCeE
Confidence 321 111 123678889999999994
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.45 E-value=4.4e-13 Score=119.67 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIVs 272 (324)
...+|||+|||+|.++..+++.+ ++.+|+|+|+|+++++.|++|++.+++. +++++++|+.+.+. ...+.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence 35689999999999999999986 7789999999999999999999998884 59999999833332 12468999999
Q ss_pred cCCC--CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPY--IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPY--i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.|. .... .+ ........+++++.++|||||+
T Consensus 118 ~~~~p~~~~~----------~~----------~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 118 NFPDPWPKKR----------HH----------KRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred ECCCCCCCcc----------cc----------ccccCCHHHHHHHHHHcCCCCE
Confidence 8642 2110 00 0011234788999999999994
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=7.3e-13 Score=122.95 Aligned_cols=103 Identities=24% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||.|.+++.+|+++ +.+|+|+++|+++.+.+++.++..|+++++++...|+.+. .++||-||
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----ccccceee
Confidence 55678899999999999999999996 6899999999999999999999999998999999998764 35699999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| -++..| -|.+.+..+++.+.++|+|||.
T Consensus 143 S--------------vgmfEh----------vg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 143 S--------------VGMFEH----------VGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred e--------------hhhHHH----------hCcccHHHHHHHHHhhcCCCce
Confidence 9 222222 1345677899999999999994
No 66
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=1.5e-12 Score=120.83 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~--~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
++.+|||+|||+|.++..+++.++++++|+|+|+|++|++.|+++... .+...+++++++|..+ ++..+++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEEE
Confidence 467999999999999999998765678999999999999999987642 2233469999999876 3333568999998
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+--+ +|-+ ....+++++.++|||||.
T Consensus 152 ~~~l--------------~~~~------------d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 152 GYGL--------------RNVV------------DRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred eccc--------------ccCC------------CHHHHHHHHHHHcCcCcE
Confidence 5211 2211 123688999999999994
No 67
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.44 E-value=2e-12 Score=113.14 Aligned_cols=120 Identities=20% Similarity=0.341 Sum_probs=99.4
Q ss_pred EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH
Q 020573 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (324)
Q Consensus 152 i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~ 231 (324)
|+| -.|.|..+.+.++ ---||.+..+-+.+.+++ ... ...+.++||+++|||++++..+.+ ...+++.||.|..
T Consensus 4 Ii~-G~~kgr~L~~p~~-~~~RPT~drVREalFNil-~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~ 77 (187)
T COG0742 4 IIG-GKYKGRKLKTPDG-PGTRPTTDRVREALFNIL-APD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRK 77 (187)
T ss_pred EEe-ccccCCcccCCCC-CCcCCCchHHHHHHHHhc-ccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHH
Confidence 444 3577888887776 233888889999999888 321 356889999999999999999997 4579999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccccccCCCC--eeEEEEcCCCC
Q 020573 232 AAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGK--LSGVVSNPPYI 277 (324)
Q Consensus 232 al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~--fDlIVsNPPYi 277 (324)
++...++|++..++..+++++.+|....+.....+ ||+|+.+|||.
T Consensus 78 a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 78 AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 99999999999998889999999998665554444 99999999997
No 68
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=2e-13 Score=123.10 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||-|.++..+|+. ++.|+|+|++++++++|+..+...++. +.+.+....+... ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~-~~~~FDvV~c- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS-AGGQFDVVTC- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh-cCCCccEEEE-
Confidence 45789999999999999999996 489999999999999999999999875 7777777766332 2379999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-||..|-|.- +.|+..+.+++||||+
T Consensus 131 -------------mEVlEHv~dp------------~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 131 -------------MEVLEHVPDP------------ESFLRACAKLVKPGGI 156 (243)
T ss_pred -------------hhHHHccCCH------------HHHHHHHHHHcCCCcE
Confidence 4888886654 4689999999999995
No 69
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.43 E-value=6.6e-13 Score=128.70 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=89.6
Q ss_pred eeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 161 l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+.|.++++.|++- ..++.+++.+.+++ . . .+.++||++||+|.+++.+++.. .+|+|+|+++.|++.|++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~---~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-K---G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY 246 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHh-h---c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence 6788889999873 57889999988877 2 1 12479999999999999999874 589999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccC---------------CCCeeEEEEcCCCC
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------------EGKLSGVVSNPPYI 277 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~---------------~~~fDlIVsNPPYi 277 (324)
|++.+++. +++++.+|+.+.+..+ ..+||+|+.||||.
T Consensus 247 N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 247 NIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred HHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC
Confidence 99999986 5999999997754321 12589999999983
No 70
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=9e-13 Score=121.55 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...++.++++++++|+.+......++||+|+++-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 3569999999999999999986 3799999999999999999999999887899999998764322346899999953
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|- .....+++++.++|||||+
T Consensus 121 vl--------------~~~------------~~~~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 121 VL--------------EWV------------ADPKSVLQTLWSVLRPGGA 144 (255)
T ss_pred HH--------------Hhh------------CCHHHHHHHHHHHcCCCeE
Confidence 21 221 1113578899999999995
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=3.2e-13 Score=106.84 Aligned_cols=99 Identities=26% Similarity=0.351 Sum_probs=74.5
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~--~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
|||+|||+|..+..+++.+ ++..+++|+|+|++|++.|+++....+. +++++++|+.+ +....++||+|+++=
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~-- 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSG-- 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-T--
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcC--
Confidence 7999999999999999986 3347999999999999999999988766 59999999977 444457999999920
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
..+ .|-+ -+.++.++++..++|||||
T Consensus 76 ---~~~--------~~~~----------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 ---LSL--------HHLS----------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---TGG--------GGSS----------HHHHHHHHHHHHHTEEEEE
T ss_pred ---Ccc--------CCCC----------HHHHHHHHHHHHHHhCCCC
Confidence 001 1111 2345689999999999998
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.43 E-value=9.9e-13 Score=122.70 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||.|.+++.+|+++ +++|+|+.+|++..+.|++.+++.|+.+++++...|+.+. .++||.||
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~~~fD~Iv 132 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----PGKFDRIV 132 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----CCCCCEEE
Confidence 55678899999999999999999996 5899999999999999999999999999999999998762 24999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| -++..|- |-..+..+++.+.++|||||.
T Consensus 133 S--------------i~~~Ehv----------g~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 133 S--------------IEMFEHV----------GRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp E--------------ESEGGGT----------CGGGHHHHHHHHHHHSETTEE
T ss_pred E--------------Eechhhc----------ChhHHHHHHHHHHHhcCCCcE
Confidence 9 2222331 234567899999999999994
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=1.8e-12 Score=116.62 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=78.9
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
+..+.+..+..+..| .++..+.+.+ ...++.+|||+|||+|+++..+++..+++++|+++|+++++++.|++|
T Consensus 48 d~~~~~~~g~~~~~p---~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 48 DTPLEIGYGQTISAI---HMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred CCCccCCCCCEeCcH---HHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 444444444333222 3444444444 233567999999999999999999876668999999999999999999
Q ss_pred HHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+++. +++++.+|..+.... .+.||+|+++
T Consensus 121 l~~~g~~-~v~~~~gd~~~~~~~-~~~fD~I~~~ 152 (212)
T PRK13942 121 LKKLGYD-NVEVIVGDGTLGYEE-NAPYDRIYVT 152 (212)
T ss_pred HHHcCCC-CeEEEECCcccCCCc-CCCcCEEEEC
Confidence 9999885 599999998765433 3689999984
No 74
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.42 E-value=6.8e-13 Score=125.63 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=89.5
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~------~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+|.|+..+.++++.+. ...+.+|+|++||+|.+.+++.+.+ ....+++|+|+++.++.+|+.|+..
T Consensus 28 ~~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp C---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4678877777666652 1235589999999999999998742 2568999999999999999999988
Q ss_pred cCCCCc-EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcc-cchhhhhcccccccccCCCCcHHHHHHHHHHHhccc
Q 020573 243 YGLQDI-IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDIS-GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (324)
Q Consensus 243 ~gl~~r-v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~-~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~L 319 (324)
++.... ..+..+|.+...... .++||+||+||||....-.. ...... +|... .......+. .+++.+.+.|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~--~Fi~~~l~~L 173 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDE-RFKKY---FPPKSNAEY--AFIEHALSLL 173 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTC-CCTTC---SSSTTEHHH--HHHHHHHHTE
T ss_pred hccccccccccccccccccccccccccccccCCCCccccccccccccccc-ccccc---CCCccchhh--hhHHHHHhhc
Confidence 876543 468899987643332 36899999999999762111 111111 22111 222333443 3889999999
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
|+||.
T Consensus 174 k~~G~ 178 (311)
T PF02384_consen 174 KPGGR 178 (311)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 99983
No 75
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.41 E-value=2.3e-12 Score=114.45 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.++++++..++. +.+..+|..... ..++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~--~~~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA--LNEDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc--ccCCCCEEEEec
Confidence 3569999999999999999985 479999999999999999999888874 778888875421 235899999987
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+... . .+....+++.+.++|||||+
T Consensus 103 ~~~~~------~------------------~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 103 VFMFL------Q------------------AGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ccccC------C------------------HHHHHHHHHHHHHHhCCCcE
Confidence 76411 0 12334688999999999994
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=1.2e-12 Score=116.03 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=84.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsN 273 (324)
..++||+|||+|.+++.+++.. |+.+|+|+|+++++++.|++|+...++. +++++++|+.+.... ..+.+|.|++|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4589999999999999999986 8899999999999999999999999886 599999999764321 13589999999
Q ss_pred CC--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PP--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+| |.. . +|..+.. ....+++.++++|||||.
T Consensus 95 ~pdpw~k----------~-~h~~~r~---------~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 95 FPDPWPK----------K-RHNKRRI---------TQPHFLKEYANVLKKGGV 127 (194)
T ss_pred CCCcCCC----------C-Ccccccc---------CCHHHHHHHHHHhCCCCE
Confidence 75 321 1 2222211 124688999999999994
No 77
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=2.8e-12 Score=117.86 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+.+|||+|||+|..+..+++.+ .++++|+|+|+|+.|++.|++|+..++..++++++++|+.+. +. +.+|+|++|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCCEEehh
Confidence 45689999999999999998843 367899999999999999999999988877899999998763 22 469999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.... |-+ .+....+++++.+.|||||.
T Consensus 133 ~~l~--------------~l~----------~~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 133 FTLQ--------------FLE----------PSERQALLDKIYQGLNPGGA 159 (247)
T ss_pred hHHH--------------hCC----------HHHHHHHHHHHHHhcCCCCE
Confidence 4321 111 01234688999999999994
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=2.9e-12 Score=113.60 Aligned_cols=98 Identities=22% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+++++.|++|++++++. +++++.+|..+.+......+|.++.+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 46799999999999999999864 6789999999999999999999999885 599999998653332223455554420
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ..+..+++.+.++|+|||+
T Consensus 118 --------------------------~----~~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 118 --------------------------G----RPIKEILQAVWQYLKPGGR 137 (196)
T ss_pred --------------------------C----cCHHHHHHHHHHhcCCCeE
Confidence 0 1134678888999999984
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=3.3e-12 Score=113.57 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.|++.|++++...++.+ +++..+|+.+.. ..++||+|+++-
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT--FDGEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC--cCCCcCEEEEec
Confidence 4579999999999999999985 3699999999999999999999988854 999999987632 236799999974
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ .+....+++.+.++|||||+
T Consensus 104 ~~--------------~~~~----------~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 104 VL--------------MFLE----------AKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred ch--------------hhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 32 1111 12345789999999999994
No 80
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.40 E-value=5e-12 Score=110.23 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=83.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+++|+|||||.+++.++.. +|.++|+|+|.++++++..++|+++.|++ +++++.||.-+.+.... ++|.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCC-CCCEEE
Confidence 3446779999999999999999955 69999999999999999999999999965 59999999988777643 788888
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ |. .-+..+++.+..+|||||.
T Consensus 108 IG---------------------------Gg---~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 108 IG---------------------------GG---GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred EC---------------------------CC---CCHHHHHHHHHHHcCcCCe
Confidence 73 22 2244688999999999984
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=1.9e-12 Score=116.65 Aligned_cols=98 Identities=21% Similarity=0.151 Sum_probs=81.5
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|||+|||+|..+..+++.+ ++.+|+|+|+|+++++.|++++...|+.+++++..+|+.+.. ..++||+|+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~~~~fD~I~~~---- 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--FPDTYDLVFGF---- 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--CCCCCCEeehH----
Confidence 79999999999999999986 678999999999999999999999999889999999986542 23689999983
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|-+ ....+++++.++|||||+
T Consensus 75 ----------~~l~~~~------------~~~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 75 ----------EVIHHIK------------DKMDLFSNISRHLKDGGH 99 (224)
T ss_pred ----------HHHHhCC------------CHHHHHHHHHHHcCCCCE
Confidence 2323321 134789999999999995
No 82
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.39 E-value=4e-12 Score=118.95 Aligned_cols=108 Identities=23% Similarity=0.256 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccccc--CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKD--VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~--~~~~fDlIV 271 (324)
.+++|||++|=||.+++.++.. ...+|++||.|..++++|++|++.||++ ++++++++|+++.+.. ..++||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999988774 4468999999999999999999999986 6799999999986542 146999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++||=-.... + +=...|..++..+.++|+|||+
T Consensus 201 lDPPsF~k~~----------~----------~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSK----------F----------DLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESST----------C----------EHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCH----------H----------HHHHHHHHHHHHHHHhcCCCCE
Confidence 9999332111 1 0024678899999999999984
No 83
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.38 E-value=1.6e-12 Score=123.97 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. +.+|+|+|.++++++.|+++++..+...+++++++|+.+ +....++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~-- 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAVLS-- 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEEEE--
Confidence 4568999999999999999873 579999999999999999998776665679999999865 3323468999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|..|-+. ...++++..++|||||.
T Consensus 205 ------------~~vLeHv~d------------~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 205 ------------LEVIEHVAN------------PAEFCKSLSALTIPNGA 230 (322)
T ss_pred ------------hhHHHhcCC------------HHHHHHHHHHHcCCCcE
Confidence 355555332 34688899999999995
No 84
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=4.1e-12 Score=118.04 Aligned_cols=102 Identities=27% Similarity=0.353 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+++..++..+|+|+|+++.+++.|++|....++. +++++.+|+.+ ++...+.||+|++|-
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~-l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEA-LPVADNSVDVIISNC 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhh-CCCCCCceeEEEEcC
Confidence 5679999999999999888887666779999999999999999999988875 69999999866 332246899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|-|. ...+++++.++|||||+
T Consensus 155 v~--------------~~~~d------------~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 155 VI--------------NLSPD------------KERVFKEAFRVLKPGGR 178 (272)
T ss_pred cc--------------cCCCC------------HHHHHHHHHHHcCCCcE
Confidence 32 12111 13678999999999995
No 85
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.4e-12 Score=128.06 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=102.6
Q ss_pred CCCceeEEec----ccccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC
Q 020573 146 RKPFQYLVGC----EHWRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (324)
Q Consensus 146 ~~pl~yi~g~----~~f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p 219 (324)
+.|++++-|. +.+.|+.|.++++.|++. ...|.+...+.++. +...++.++|++||||.|++++|+.+
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~~~-- 405 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALARGV-- 405 (534)
T ss_pred CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhccc--
Confidence 3678877664 577899999999999985 78899999999887 34456789999999999999999975
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC----CCee-EEEEcCCCC
Q 020573 220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE----GKLS-GVVSNPPYI 277 (324)
Q Consensus 220 ~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~----~~fD-lIVsNPPYi 277 (324)
.+|+||++++++++.|++|++.||++| .+|++|-..+.+..+. +.=+ ++|.|||-.
T Consensus 406 -~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~ 466 (534)
T KOG2187|consen 406 -KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK 466 (534)
T ss_pred -cceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcccCCCCCceEEEECCCcc
Confidence 799999999999999999999999986 9999996555443321 2334 889999973
No 86
>PLN02476 O-methyltransferase
Probab=99.37 E-value=6.1e-12 Score=117.19 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..+...+.... +.++|||+|||+|+.++.+|+..+++++|+++|.++++.+.|++|+++.|+.++|+++
T Consensus 103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 456666666666544 4679999999999999999998766889999999999999999999999999999999
Q ss_pred EcccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||..+.++.+ .++||+|+.+.+- ..|..+++.+.++|+|||+
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K-----------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADK-----------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcE
Confidence 99998866432 3589999996431 2345677888899999995
No 87
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=3e-12 Score=118.03 Aligned_cols=94 Identities=28% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++ +++++++|+.+.. ..++||+|++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~fD~v~~~ 96 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK--PKPDTDVVVSN 96 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC--CCCCceEEEEe
Confidence 346799999999999999999986 778999999999999999763 3789999986542 24689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-|. ...+++++.+.|||||+
T Consensus 97 ~~l~--------------~~~d------------~~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 97 AALQ--------------WVPE------------HADLLVRWVDELAPGSW 121 (255)
T ss_pred hhhh--------------hCCC------------HHHHHHHHHHhCCCCcE
Confidence 6542 2111 13578888999999994
No 88
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3e-12 Score=126.31 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=95.1
Q ss_pred CeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
+..+.+.++.|++- ..++.|++.+.+++ +..++.+++|+.||.|.|++.+|+.. .+|+|+|+++++++.|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQ 332 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHH
Confidence 46788888888873 67899999999998 33346789999999999999999764 79999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCC--CCeeEEEEcCCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVE--GKLSGVVSNPPYIP 278 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~--~~fDlIVsNPPYi~ 278 (324)
+|++.|++.| ++|..++..+...... ..+|.||.|||=-.
T Consensus 333 ~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G 374 (432)
T COG2265 333 ENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG 374 (432)
T ss_pred HHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC
Confidence 9999999987 9999999988655432 47899999999653
No 89
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.36 E-value=4.3e-12 Score=128.64 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=81.6
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-------~~~V~gvDis~~al~~Ar~N 239 (324)
..+|.|...++.+++.+.... .........+|+|+|||+|++.++++..+.. ...++|+|+++.++..|+.|
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 456889999999998876543 1111113468999999999999999987621 25799999999999999999
Q ss_pred HHHcCCCCcEEEEEccccccc----ccCCCCeeEEEEcCCCCCCC
Q 020573 240 AQRYGLQDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l----~~~~~~fDlIVsNPPYi~~~ 280 (324)
+...+. ..+.+..+|..... ....++||+||+||||+...
T Consensus 83 l~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 83 LGEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred HhhcCC-CCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence 987762 22566666654321 11135899999999999754
No 90
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.36 E-value=2.2e-12 Score=124.52 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=78.4
Q ss_pred CeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++.|.++++.|++ ...++.+++.+.+++ . .. +..+||+.||+|.+++.+|+.+ .+|+|||+++.|++.|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~---~~-~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-D---LS-KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHC-T---T--TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHh-h---cC-CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence 5678999999997 377899999999988 2 22 2379999999999999999975 69999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccc------------c---CCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLK------------D---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~------------~---~~~~fDlIVsNPPYi 277 (324)
+|++.+++.+ ++|+.++..+... . ....+|+||.|||=-
T Consensus 236 ~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~ 289 (352)
T PF05958_consen 236 ENAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA 289 (352)
T ss_dssp HHHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT
T ss_pred HHHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC
Confidence 9999999975 9999887643211 0 012689999999964
No 91
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.35 E-value=5e-12 Score=119.88 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDlIVs 272 (324)
.++..|||..||||.+.+.+... +++++|+|++..|++-|+.|++.+++.+ ..++.+ |+.+ ++-.+.++|.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~-lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN-LPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc-CCCCCCccceEEe
Confidence 45779999999999999998874 5899999999999999999999999876 766666 8766 3322235999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|||..+....... =-++|..+++.+.++||+||+
T Consensus 271 DPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 271 DPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGR 305 (347)
T ss_pred cCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcE
Confidence 99998765432111 136788999999999999995
No 92
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.35 E-value=2.6e-12 Score=98.84 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=71.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~ 279 (324)
||+|||+|..+..+++. +..+|+++|+++++++.++++.... ++.+.++|..+. +..+++||+|+++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~~~~sfD~v~~~------ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PFPDNSFDVVFSN------ 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-TT-EEEEEEE------
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-ccccccccccccc------
Confidence 79999999999999997 5789999999999999999987643 366999998774 4446899999995
Q ss_pred CCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 280 ~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..| ++....+++++.++|||||+
T Consensus 68 --------~~~~~------------~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 68 --------SVLHH------------LEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp --------SHGGG------------SSHHHHHHHHHHHHEEEEEE
T ss_pred --------cceee------------ccCHHHHHHHHHHHcCcCeE
Confidence 22233 13455889999999999995
No 93
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.35 E-value=2e-13 Score=107.43 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=62.5
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP 278 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~ 278 (324)
||+|||+|.++..++..+ +..+++|+|+|+.|++.|+++....+..+ ......+..+..... .++||+|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~----- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS----- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence 799999999999999997 78999999999999999999998876543 444444433322211 2599999994
Q ss_pred CCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 279 ~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..| ++..+.+++.+.++|||||+
T Consensus 74 ---------~vl~~------------l~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 74 ---------NVLHH------------LEDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp ----------TTS--------------S-HHHHHHHHTTT-TSS-E
T ss_pred ---------hhHhh------------hhhHHHHHHHHHHHcCCCCC
Confidence 34344 23455899999999999995
No 94
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.34 E-value=4.7e-12 Score=132.40 Aligned_cols=137 Identities=21% Similarity=0.132 Sum_probs=97.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---------------------------------
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--------------------------------- 218 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~--------------------------------- 218 (324)
+-|..|.++..++... .- ...+..++|++||||.+.+..|....
T Consensus 170 ~Apl~etlAaa~l~~a-~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 170 EAPLKENLAAAILLRS-GW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCcHHHHHHHHHHc-CC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 3467777887777543 11 12356899999999999999886310
Q ss_pred --------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCc----ccc
Q 020573 219 --------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDI----SGL 285 (324)
Q Consensus 219 --------p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~----~~l 285 (324)
...+++|+|+++.|++.|++|+..+|+.+++++.++|+.+..... .++||+||+||||...-.. ..+
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l 326 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL 326 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence 123799999999999999999999999988999999998743221 2479999999999754321 111
Q ss_pred hhh------hhcccccccccCCCCcHHHHHHH
Q 020573 286 QVE------VGKHEPRLALDGGVDGLDYLLHL 311 (324)
Q Consensus 286 ~~e------v~~~eP~~aL~gg~dGl~~~~~i 311 (324)
..+ .....+..++..+++++.....+
T Consensus 327 Y~~lg~~lk~~~~g~~~~llt~~~~l~~~~~l 358 (702)
T PRK11783 327 YSQLGRRLKQQFGGWNAALFSSSPELLSCLGL 358 (702)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHhCC
Confidence 111 11245667788888877766554
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=8.5e-12 Score=117.17 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|..++.+++. +.+|+|+|+|+.|++.+++|++..++ ++++..+|+.+.. ..++||+|+++-
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--IQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--ccCCccEEEEcc
Confidence 3569999999999999999985 47999999999999999999999888 4899888876532 246899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|-+ -+....+++.+.++|+|||+
T Consensus 193 vl--------------~~l~----------~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 193 VL--------------MFLN----------RERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred hh--------------hhCC----------HHHHHHHHHHHHHhcCCCcE
Confidence 32 1110 12345789999999999995
No 96
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.34 E-value=9.4e-12 Score=119.25 Aligned_cols=121 Identities=21% Similarity=0.095 Sum_probs=89.0
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
++.|+..++.+.+.+++.. . ....+.+|||+|||+|.++..+++.+ +..+|+++|+|+++++.|+++... .+
T Consensus 90 ~~~~~~~~e~~r~~~l~~~-~--l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~----~~ 161 (340)
T PLN02490 90 IINPGHWTEDMRDDALEPA-D--LSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KE 161 (340)
T ss_pred CeecCcchHHHHHHHHhhc-c--cCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc----cC
Confidence 4456677777777666543 1 11245699999999999999999886 567999999999999999998652 34
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+|+.+ +....+.||+|++|..+. |-|. ...+++++.+.|||||.
T Consensus 162 i~~i~gD~e~-lp~~~~sFDvVIs~~~L~--------------~~~d------------~~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 162 CKIIEGDAED-LPFPTDYADRYVSAGSIE--------------YWPD------------PQRGIKEAYRVLKIGGK 210 (340)
T ss_pred CeEEeccHHh-CCCCCCceeEEEEcChhh--------------hCCC------------HHHHHHHHHHhcCCCcE
Confidence 8899999876 222246899999974432 1111 12578999999999994
No 97
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=1.6e-11 Score=112.07 Aligned_cols=103 Identities=19% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ .++++|+|+|+|+.|++.|+++++..+...+++++++|+.+.. . ..+|+|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEeee
Confidence 45689999999999999999874 2578999999999999999999988776667999999997632 2 368999985
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.. .|-+ .+....+++++.+.|||||+
T Consensus 130 ~~l--------------~~~~----------~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 130 FTL--------------QFLP----------PEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred cch--------------hhCC----------HHHHHHHHHHHHHhcCCCeE
Confidence 321 1111 11234688999999999994
No 98
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.34 E-value=6.9e-12 Score=121.17 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=87.2
Q ss_pred eeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 161 l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+.+.++++.|.+- ..++.+++.+.+++ . . .+.++||+|||+|.+++.+++.. .+|+|+|++++|++.|++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~---~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-Q---G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHh-h---c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence 6788888988853 45788888888876 2 1 12379999999999999999874 489999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccC---------C------CCeeEEEEcCCC
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------E------GKLSGVVSNPPY 276 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~---------~------~~fDlIVsNPPY 276 (324)
|++.+++.+ ++++.+|+.+.+... . .+||+|+.|||.
T Consensus 238 n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR 289 (353)
T TIGR02143 238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR 289 (353)
T ss_pred HHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC
Confidence 999999865 999999997754321 1 148999999995
No 99
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.33 E-value=5e-12 Score=112.60 Aligned_cols=107 Identities=28% Similarity=0.347 Sum_probs=73.4
Q ss_pred Ceeeee--eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSV--EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v--~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|..|.+ +.-+|.||-.+|.. .+.+.+ .++..|+|++||.|.+++.+|+. ++..+|+|+|++|.|++.++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~ 142 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK 142 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence 445554 44567788666652 222222 24679999999999999999995 35689999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|++.|++.+++..+++|..+.+. .+.+|-|++|.|..
T Consensus 143 ~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~~ 180 (200)
T PF02475_consen 143 ENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPES 180 (200)
T ss_dssp HHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TSS
T ss_pred HHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChHH
Confidence 999999999999999999988665 47999999998864
No 100
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=7.6e-12 Score=115.25 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|+++. .++.++.+|..+... .++||+|++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--PQALDLIFAN 100 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--CCCccEEEEc
Confidence 346799999999999999999986 7789999999999999999874 248899999876432 3589999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-+ ....+++++.+.|||||+
T Consensus 101 ~~l~--------------~~~------------d~~~~l~~~~~~LkpgG~ 125 (258)
T PRK01683 101 ASLQ--------------WLP------------DHLELFPRLVSLLAPGGV 125 (258)
T ss_pred cChh--------------hCC------------CHHHHHHHHHHhcCCCcE
Confidence 5542 111 123678888999999994
No 101
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.33 E-value=2.8e-12 Score=124.58 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccCC---CCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVE---GKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~~---~~fDlI 270 (324)
.+++|||++|=||.+++.+|.. ...+|++||+|..++++|++|++.||+. +++.|+++|.|+.+.... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4789999999999999999985 4459999999999999999999999985 568999999999876542 389999
Q ss_pred EEcCC-CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPP-YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPP-Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.+|| |..+... + .++..+|..++..+.+.|+|||+
T Consensus 295 ilDPPsF~r~k~~----------~--------~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 295 ILDPPSFARSKKQ----------E--------FSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred EECCcccccCccc----------c--------hhHHHHHHHHHHHHHHHcCCCCE
Confidence 99999 4433221 1 23467889999999999999995
No 102
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=8e-12 Score=111.84 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=79.5
Q ss_pred EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH
Q 020573 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (324)
Q Consensus 152 i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~-~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~ 230 (324)
+++.+.||+-+| ...+++|..++.++...++.+... ....++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+
T Consensus 2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~ 77 (204)
T TIGR03587 2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE 77 (204)
T ss_pred cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH
Confidence 455666666555 233778876665555444433110 012245689999999999999999875 678999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 231 LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 231 ~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+|++.|+++.. ++.+.++|+.++.. .++||+|++|
T Consensus 78 ~~l~~A~~~~~------~~~~~~~d~~~~~~--~~sfD~V~~~ 112 (204)
T TIGR03587 78 YAVEKAKAYLP------NINIIQGSLFDPFK--DNFFDLVLTK 112 (204)
T ss_pred HHHHHHHhhCC------CCcEEEeeccCCCC--CCCEEEEEEC
Confidence 99999998742 37888999887433 4799999996
No 103
>PRK06922 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=126.01 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.|++.|++++...+. +++++++|..+... ...++||+|++|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46799999999999999999986 789999999999999999999876653 58899999876311 124689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++..- ..|.| ..++..+.+....+++++.++|||||+
T Consensus 495 ~vLH~L----------~syIp---~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 495 SILHEL----------FSYIE---YEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred hHHHhh----------hhhcc---cccccccHHHHHHHHHHHHHHcCCCcE
Confidence 876410 01111 112223456778899999999999995
No 104
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=111.06 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|++-.+...+.... .+++||++||+.|+-++.+|..++.+++++.+|++++..+.|++|+++.|+.++|+++.
T Consensus 45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 67777777776644 46799999999999999999998558999999999999999999999999999999999
Q ss_pred -ccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 -GSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 -gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+.+.. ..++||+|+.+ +.+ ..|..+++.+.++|+|||+
T Consensus 118 ~gdal~~l~~~~~~~fDliFID------------------adK-----------~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFID------------------ADK-----------ADYPEYLERALPLLRPGGL 161 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEe------------------CCh-----------hhCHHHHHHHHHHhCCCcE
Confidence 599887764 46899999984 110 1345788889999999995
No 105
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.32 E-value=7.5e-12 Score=108.42 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++|+.. .++++++++|+.+.... ..+||.|++||
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-KLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-ccCCCEEEECC
Confidence 4568999999999999999986 37999999999999999999864 24699999999874322 24699999999
Q ss_pred CCCC
Q 020573 275 PYIP 278 (324)
Q Consensus 275 PYi~ 278 (324)
||..
T Consensus 86 Py~~ 89 (169)
T smart00650 86 PYNI 89 (169)
T ss_pred Cccc
Confidence 9974
No 106
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.32 E-value=3.2e-12 Score=110.07 Aligned_cols=78 Identities=32% Similarity=0.493 Sum_probs=61.2
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC-CC-eeEEEEcCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GK-LSGVVSNPP 275 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~-~~-fDlIVsNPP 275 (324)
.|+|++||.|.-++.+|+.+ .+|+|+|+++..++.|+.|++-+|+.++|+++++|+++.+.... .. +|+|+++||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 69999999999999999986 68999999999999999999999999999999999998765432 12 899999999
Q ss_pred CCC
Q 020573 276 YIP 278 (324)
Q Consensus 276 Yi~ 278 (324)
|..
T Consensus 79 WGG 81 (163)
T PF09445_consen 79 WGG 81 (163)
T ss_dssp BSS
T ss_pred CCC
Confidence 975
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.32 E-value=2.4e-11 Score=108.97 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++|++++++.+ +++..+|..+.+.. .++||+|+++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPA-YAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCc-CCCcCEEEEc
Confidence 356799999999999999888864 489999999999999999999998865 99999998775443 3689999997
Q ss_pred CC
Q 020573 274 PP 275 (324)
Q Consensus 274 PP 275 (324)
.+
T Consensus 152 ~~ 153 (212)
T PRK00312 152 AA 153 (212)
T ss_pred cC
Confidence 53
No 108
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.31 E-value=7.4e-12 Score=112.07 Aligned_cols=115 Identities=25% Similarity=0.406 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+++..++..+.... +.++||++|||+|+-++.+|+.++++++|+.+|++++..+.|++|+++.|+.++|+++.
T Consensus 31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 45555666666554 35699999999999999999988678999999999999999999999999999999999
Q ss_pred cccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+.+.++.+ .++||+|+.+= +- ..|..+++.+.++|++||+
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa-------------~K----------------~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDA-------------DK----------------RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEES-------------TG----------------GGHHHHHHHHHHHEEEEEE
T ss_pred eccHhhHHHHHhccCCCceeEEEEcc-------------cc----------------cchhhHHHHHhhhccCCeE
Confidence 9998765432 25899999941 00 1233566777789999985
No 109
>PRK04457 spermidine synthase; Provisional
Probab=99.31 E-value=7.1e-12 Score=116.35 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.+ |+.+|+++|+++++++.|+++....+..++++++.+|..+.+....++||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35689999999999999999986 88999999999999999999987655556899999999876655456899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.... .+. . .....+++.+.++|+|||+
T Consensus 145 -~~~~~----~~~-------~----------l~t~efl~~~~~~L~pgGv 172 (262)
T PRK04457 145 -FDGEG----IID-------A----------LCTQPFFDDCRNALSSDGI 172 (262)
T ss_pred -CCCCC----Ccc-------c----------cCcHHHHHHHHHhcCCCcE
Confidence 32111 000 0 0124788999999999995
No 110
>PRK08317 hypothetical protein; Provisional
Probab=99.30 E-value=3.8e-11 Score=107.96 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|..+.+.+.+.+.+ ...++.+|||+|||+|.++..+++.+++.++|+|+|+++.+++.|+++.. ....++++..
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~ 75 (241)
T PRK08317 2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVR 75 (241)
T ss_pred chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEe
Confidence 34455566666655 33456799999999999999999987567899999999999999999833 2334699999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|..+. +...++||+|+++--+ .|-+ ....+++++.+.|||||+
T Consensus 76 ~d~~~~-~~~~~~~D~v~~~~~~--------------~~~~------------~~~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 76 GDADGL-PFPDGSFDAVRSDRVL--------------QHLE------------DPARALAEIARVLRPGGR 119 (241)
T ss_pred cccccC-CCCCCCceEEEEechh--------------hccC------------CHHHHHHHHHHHhcCCcE
Confidence 998652 2224689999995221 2211 123678888999999994
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.1e-11 Score=108.96 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=87.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|+|.|+|||+++..||..+++.++|+.+|+.++..+.|++|++..++.+++.+..+|..+.... ..||.|+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~ 168 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDAVF 168 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCEEE
Confidence 44568899999999999999999988899999999999999999999999999999999999999887654 4899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+-| +|. ..++++.+.|||||+
T Consensus 169 LDmp-----------------~PW--------------~~le~~~~~Lkpgg~ 190 (256)
T COG2519 169 LDLP-----------------DPW--------------NVLEHVSDALKPGGV 190 (256)
T ss_pred EcCC-----------------ChH--------------HHHHHHHHHhCCCcE
Confidence 9644 232 578889999999984
No 112
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.28 E-value=5.2e-11 Score=110.57 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|..+..+++.+ .++|+|+|+|+.+++.|+++... .+++.+..+|+.+. +...++||+|+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CCCCCCeEEEEEh
Confidence 356799999999999999998864 57999999999999999988654 34699999998752 2224689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.- ..|-+ .+....+++++.++|||||+
T Consensus 125 ~~--------------l~h~~----------~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 125 DA--------------ILHLS----------YADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred hh--------------HHhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 21 12211 12334788999999999995
No 113
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=5e-11 Score=113.83 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++...+..+...+++++.+|+.+. +. .++||+|+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V~s~ 196 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTVFSM 196 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEEEEC
Confidence 45679999999999999999987 33 479999999998876554444333345699999998763 33 5789999993
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|.+ ....+++++.+.|+|||.
T Consensus 197 --------------~vl~H~~------------dp~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 197 --------------GVLYHRR------------SPLDHLKQLKDQLVPGGE 221 (322)
T ss_pred --------------ChhhccC------------CHHHHHHHHHHhcCCCcE
Confidence 2333422 234678999999999994
No 114
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.27 E-value=4.6e-11 Score=113.06 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+..+|||+|||+|.+++.+++++ |+.+++++|. +.+++.|++|++..|+.++++++.+|+++... +.+|+|++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~---~~~D~v~~~ 222 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY---PEADAVLFC 222 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---CCCCEEEeE
Confidence 345799999999999999999997 8899999998 79999999999999999999999999986321 247987752
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++- +-+....+++++.+.|||||.
T Consensus 223 --------------~~lh~~----------~~~~~~~il~~~~~~L~pgG~ 249 (306)
T TIGR02716 223 --------------RILYSA----------NEQLSTIMCKKAFDAMRSGGR 249 (306)
T ss_pred --------------hhhhcC----------ChHHHHHHHHHHHHhcCCCCE
Confidence 111110 112345789999999999994
No 115
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.26 E-value=4.7e-11 Score=113.51 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=84.3
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++....+....+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++
T Consensus 109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~ 184 (315)
T PLN02585 109 YGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAER 184 (315)
T ss_pred cCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHH
Confidence 45556667777888888888888888887 3221234679999999999999999985 4699999999999999999
Q ss_pred HHHHcCC----CCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 239 NAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 239 N~~~~gl----~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
|++..+. ..++.|..+|+.+. .++||+|+++-
T Consensus 185 ~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~~ 220 (315)
T PLN02585 185 RAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCLD 220 (315)
T ss_pred HHHhcccccccccceEEEEcchhhc----CCCcCEEEEcC
Confidence 9876532 13588999997542 36899999863
No 116
>PRK00811 spermidine synthase; Provisional
Probab=99.25 E-value=4.3e-11 Score=112.33 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L--QDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l--~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
.+++||++|||+|.++..+++.. +..+|++||+++++++.|+++....+ . .++++++.+|..+.+....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 46799999999999999998863 45799999999999999999986532 2 4579999999987665445789999
Q ss_pred EEcC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|. |+.+... + ..+.+++.+.+.|+|||+
T Consensus 155 i~D~~dp~~~~~~-----------------------l-~t~ef~~~~~~~L~~gGv 186 (283)
T PRK00811 155 IVDSTDPVGPAEG-----------------------L-FTKEFYENCKRALKEDGI 186 (283)
T ss_pred EECCCCCCCchhh-----------------------h-hHHHHHHHHHHhcCCCcE
Confidence 9983 4421110 0 124678888999999995
No 117
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.25 E-value=5.1e-11 Score=105.34 Aligned_cols=100 Identities=25% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+++++||+|||.|..++.||+. +..|+|+|+|+.+++.+++.+++.+++ |+....|+.+... .+.||+|++-
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCcCEEEEE
Confidence 35779999999999999999996 589999999999999999999998886 9999999876432 4689999982
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..|-+. +....+++...+.++|||+
T Consensus 102 --------------~v~~fL~~----------~~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 102 --------------VVFMFLQR----------ELRPQIIENMKAATKPGGY 128 (192)
T ss_dssp --------------SSGGGS-G----------GGHHHHHHHHHHTEEEEEE
T ss_pred --------------EEeccCCH----------HHHHHHHHHHHhhcCCcEE
Confidence 11222221 1234688888999999995
No 118
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.24 E-value=4.6e-11 Score=112.65 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.. ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++..++..++++++++|+.+
T Consensus 24 i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 24 VLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 344444443 23356799999999999999999863 68999999999999999999888766679999999977
Q ss_pred ccccCCCCeeEEEEcCCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
.. ...||.||+|+||.-+.
T Consensus 97 ~~---~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 97 TE---FPYFDVCVANVPYQISS 115 (294)
T ss_pred hc---ccccCEEEecCCcccCc
Confidence 32 24789999999997544
No 119
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.24 E-value=6.9e-11 Score=114.69 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNP 274 (324)
+..+||+|||+|.+++.+|+.. |+..++|+|+++.+++.|.+++..+++.+ +.++++|+...+.. ..+.+|.|++|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4589999999999999999996 88999999999999999999999999976 99999998543211 247899999997
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.-=.. .+| ..+ ....+++.+.++|+|||.
T Consensus 201 PdPW~K---------krH---RRl--------v~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 201 PVPWDK---------KPH---RRV--------ISEDFLNEALRVLKPGGT 230 (390)
T ss_pred CCCccc---------cch---hhc--------cHHHHHHHHHHHcCCCcE
Confidence 631000 122 111 135789999999999994
No 120
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.24 E-value=1.3e-11 Score=112.25 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcccccccccCCCCeeEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-----rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
+.+|||+|||.|.++..||+. +++|+|+|+++++++.|++.....-..+ ++++...|..+ ..++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh----ccccccee
Confidence 467999999999999999996 3899999999999999999955443333 36666666544 23579999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|| .||..| .++...+++...++|||||.
T Consensus 163 vc--------------sevleH------------V~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 163 VC--------------SEVLEH------------VKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred ee--------------HHHHHH------------HhCHHHHHHHHHHHhCCCCc
Confidence 99 678777 55667899999999999984
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.24 E-value=1.3e-10 Score=104.59 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
.+.+.+.+++++ .. ...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++.+.++|
T Consensus 38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d 112 (219)
T TIGR02021 38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112 (219)
T ss_pred HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 345566666666 21 1235679999999999999999875 369999999999999999999888776679999999
Q ss_pred cccccccCCCCeeEEEEc
Q 020573 256 WFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 256 ~~~~l~~~~~~fDlIVsN 273 (324)
+.+.. ++||+|+++
T Consensus 113 ~~~~~----~~fD~ii~~ 126 (219)
T TIGR02021 113 LLSLC----GEFDIVVCM 126 (219)
T ss_pred hhhCC----CCcCEEEEh
Confidence 87632 589999984
No 122
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.7e-11 Score=114.69 Aligned_cols=99 Identities=27% Similarity=0.307 Sum_probs=79.7
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--------------------------------
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------- 220 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~-------------------------------- 220 (324)
-|..|.|...++... +-..+..++|+-||||.|+|..|... ++
T Consensus 173 ApLketLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 173 APLKETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred CCchHHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 366677777666543 22234589999999999999999863 31
Q ss_pred c-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 221 G-------SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 221 ~-------~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+ .++|+|+++.+++.|+.|+++.|+.+.|+|.++|+...-... +.+|+|||||||.
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG 310 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG 310 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc
Confidence 1 378999999999999999999999999999999997643332 6899999999997
No 123
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.23 E-value=7e-11 Score=115.21 Aligned_cols=77 Identities=22% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||++||+|.+++.++.+. +..+|+++|+++.+++.+++|++.|++.+ +++.++|+.+.+.. .++||+|+.|||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence 3589999999999999999985 44589999999999999999999999875 78999998765432 357999999986
No 124
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.22 E-value=6.6e-11 Score=102.33 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 176 TELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~-~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
.+.+++++.+.+. ..... ...+|||||||.|.+...|+++ +-....+|||.|++|+++|+..+++.++++.|+|.+.
T Consensus 48 e~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 48 EERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 3556777766552 11111 2239999999999999999997 3456799999999999999999999999999999999
Q ss_pred ccccccccCCCCeeEEEE
Q 020573 255 SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 255 D~~~~l~~~~~~fDlIVs 272 (324)
|.+++ ....++||+|.-
T Consensus 126 DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 126 DITDP-DFLSGQFDLVLD 142 (227)
T ss_pred eccCC-cccccceeEEee
Confidence 99986 334578998875
No 125
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.22 E-value=1.1e-10 Score=107.09 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc-ccc-cCCCCeeE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG-KLK-DVEGKLSG 269 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~-~l~-~~~~~fDl 269 (324)
+..++.+|+|-|+|||+++.++++.++|.++|+..|+.++..+.|++|++.+|+.++|.+.+.|..+ .+. ..+..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 4457889999999999999999999999999999999999999999999999999899999999964 332 23468999
Q ss_pred EEEcCC
Q 020573 270 VVSNPP 275 (324)
Q Consensus 270 IVsNPP 275 (324)
|+.+-|
T Consensus 117 vfLDlp 122 (247)
T PF08704_consen 117 VFLDLP 122 (247)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999754
No 126
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=4.8e-11 Score=109.54 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.. ...++++|+.+ ++...++||+|++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~-~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES-LPLATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc-CcCCCCcEEEEEECc
Confidence 3568999999999999988764 4799999999999999998742 25678888865 233346899999986
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++. |.+ ....++.++.++|||||+
T Consensus 112 ~l~--------------~~~------------d~~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 112 AVQ--------------WCG------------NLSTALRELYRVVRPGGV 135 (251)
T ss_pred hhh--------------hcC------------CHHHHHHHHHHHcCCCeE
Confidence 542 111 123678888999999984
No 127
>PRK04266 fibrillarin; Provisional
Probab=99.22 E-value=2.9e-10 Score=103.34 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlI 270 (324)
..++.+|||+|||+|.++..+++.. +.++|+|+|+++.|++.+.++++.. .++.++.+|..++. ....++||+|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEE
Confidence 3456799999999999999999987 4679999999999999888887754 35899999986531 1223579999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++-+. |. ....+++++.++|||||.
T Consensus 146 ~~d~~~-----------------p~-----------~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 146 YQDVAQ-----------------PN-----------QAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred EECCCC-----------------hh-----------HHHHHHHHHHHhcCCCcE
Confidence 985220 10 112467899999999994
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.22 E-value=1.5e-10 Score=103.88 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=83.3
Q ss_pred ccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 156 ~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
..|.+..+.+..+..+..| .++..+++.+ ...++.+|||+|||||+.+..+++..++...|+++|+++..++.
T Consensus 40 ~aY~d~~l~i~~~~~is~P---~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 40 LAYEDRPLPIGCGQTISAP---SMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp GTTSSS-EEEETTEEE--H---HHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred CCCCCCCeeecceeechHH---HHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 3445677777777777655 3455555555 34467899999999999999999998777899999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
|++|++.++.. ++.++.+|.....+. .+.||.|+++.
T Consensus 113 A~~~l~~~~~~-nv~~~~gdg~~g~~~-~apfD~I~v~~ 149 (209)
T PF01135_consen 113 ARRNLARLGID-NVEVVVGDGSEGWPE-EAPFDRIIVTA 149 (209)
T ss_dssp HHHHHHHHTTH-SEEEEES-GGGTTGG-G-SEEEEEESS
T ss_pred HHHHHHHhccC-ceeEEEcchhhcccc-CCCcCEEEEee
Confidence 99999999987 499999998877654 46899999963
No 129
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=1.4e-10 Score=108.83 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~i-ai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.+++|+|+|||.|-+ ++.++....++++++|+|+|+++++.|+++++. .++.++++|..+|..+.... .++||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 567999999997743 555554445889999999999999999999965 78988999999999875332 368999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ --+. +.+ ....+++++..++|+|||+
T Consensus 202 ~-ALi~------~dk------------------~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 202 A-ALVG------MDK------------------EEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred e-cccc------ccc------------------ccHHHHHHHHHHhcCCCcE
Confidence 5 2110 000 1234788999999999995
No 130
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.21 E-value=1.4e-10 Score=105.17 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCC------cEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEcccccccccCC
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSK------GSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSWFGKLKDVE 264 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~------~~V~gvDis~~al~~Ar~N~~~~gl~~r--v~~~~gD~~~~l~~~~ 264 (324)
...+.++||++||||-++..+.+.. +. .+|+.+|+|++|++++++.+++.++..+ +.++.+|..+ ++...
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v-~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHV-KSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhh-ccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCCC
Confidence 3456799999999999999999987 44 7999999999999999999988877665 9999999877 44446
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||..++- | .+ ++- -++.+.+++|+|+|||||.
T Consensus 176 ~s~D~yTia--f-----------GI-RN~------------th~~k~l~EAYRVLKpGGr 209 (296)
T KOG1540|consen 176 DSFDAYTIA--F-----------GI-RNV------------THIQKALREAYRVLKPGGR 209 (296)
T ss_pred CcceeEEEe--c-----------ce-ecC------------CCHHHHHHHHHHhcCCCcE
Confidence 789987761 1 11 221 2245789999999999994
No 131
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=109.94 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++..+..++|+++|+++++++.|++|++.+|+. ++.++++|..+.... .+.||+|+++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-FAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-cCCccEEEEC
Confidence 34679999999999999999998644468999999999999999999999985 599999998765443 2579999984
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.20 E-value=7e-11 Score=106.13 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-------ccCCCCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-------~~~~~~f 267 (324)
++.+|||+|||+|.++..+++..++.++|+|+|+++ + +... +++++++|+.+.. ....++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 466899999999999999999876668999999998 1 1233 4999999998741 0124689
Q ss_pred eEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|+||+ |+...... .+...+ +.....+++.+.++|||||+
T Consensus 119 D~V~S~~~~~~~g~~~----~d~~~~------------~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 119 QVVMSDMAPNMSGTPA----VDIPRA------------MYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred CEEecCCCCccCCChH----HHHHHH------------HHHHHHHHHHHHHHcCCCCE
Confidence 9999997 55422110 000000 22345789999999999995
No 133
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.20 E-value=1.3e-10 Score=104.66 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++.. .++.++.+|+.+.. ...++||+|+++-
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-LEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-CCCCceeEEEEhh
Confidence 34689999999999999999985 77889999999999999987654 35889999987642 2346899999962
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|. .....+++.+.+.|||||+
T Consensus 107 ~l--------------~~~------------~~~~~~l~~~~~~L~~~G~ 130 (240)
T TIGR02072 107 AL--------------QWC------------DDLSQALSELARVLKPGGL 130 (240)
T ss_pred hh--------------hhc------------cCHHHHHHHHHHHcCCCcE
Confidence 21 221 1234688899999999995
No 134
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.20 E-value=2e-10 Score=103.64 Aligned_cols=103 Identities=20% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..++...+++.+|+++|+++.+++.+++++..+++.+++.++.+|+.+.. ...+.||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~- 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIA- 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEe-
Confidence 457999999999999999999863368999999999999999999987777677999999987643 224689999984
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. ..+- .....+++.+.+.|+|||+
T Consensus 129 -~~------------l~~~------------~~~~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 129 -FG------------LRNV------------PDIDKALREMYRVLKPGGR 153 (239)
T ss_pred -cc------------cccC------------CCHHHHHHHHHHhccCCcE
Confidence 11 0111 1134678888999999994
No 135
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.19 E-value=1.8e-10 Score=114.88 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|+|.|.-+..+|..++..+.|+++|+++.-+...++|+++.|+.+ +.+...|.........+.||.|+.++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEcC
Confidence 56799999999999999999988667899999999999999999999999975 89998887653223346799999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
|+...+.+.. .|.....-..+.+ ..-++|+..|.++|||||+
T Consensus 192 PCSG~G~~rk--------~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 192 PCSGEGTVRK--------DPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred CCCCCccccc--------CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 9987765533 2322211111112 2237899999999999995
No 136
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1.4e-10 Score=106.67 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=92.9
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..+...+.... ..++||++||++|+-++.+|..++++++|+++|.+++..+.|++|+++.|+.++|+++
T Consensus 64 ~~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 64 SADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred CHHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence 355556666666544 3569999999999999999998877899999999999999999999999999999999
Q ss_pred EcccccccccC------CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~------~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||+.+.++.+ .++||+|+.+ .+ =+.|..+++.+.++|++||+
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiD-------------ad----------------K~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVD-------------AD----------------KDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEec-------------CC----------------HHHhHHHHHHHHHhcCCCeE
Confidence 99998866542 2689999984 00 01234566777889999985
No 137
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.19 E-value=2e-10 Score=112.20 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.+++.+++.. +++|+|+|+|+++++.|+++++ ++ .+++..+|+.+. .++||.|++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----~~~fD~Ivs 234 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----NGQFDRIVS 234 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----CCCCCEEEE
Confidence 3456799999999999999999874 5799999999999999999985 33 388888987652 368999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.-+ .|- |...+..+++++.++|||||+
T Consensus 235 ~~~~--------------ehv----------g~~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 235 VGMF--------------EHV----------GPKNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred eCch--------------hhC----------ChHHHHHHHHHHHHHcCCCcE
Confidence 6332 111 233456789999999999994
No 138
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=107.78 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++.. .++++++++|+.+. .. ..||.||+||
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~~--~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-DL--PEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-Cc--hhceEEEEcC
Confidence 46799999999999999999973 6899999999999999998854 24699999999873 21 3689999999
Q ss_pred CCCCC
Q 020573 275 PYIPS 279 (324)
Q Consensus 275 PYi~~ 279 (324)
||..+
T Consensus 100 Py~i~ 104 (258)
T PRK14896 100 PYQIS 104 (258)
T ss_pred CcccC
Confidence 99754
No 139
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.19 E-value=7.8e-11 Score=109.92 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.. .+|+|+|+|+++++.+++|+.. ++++++++|+.+.... .-.+|.||+||
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~-~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS-ELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH-HcCcceEEEeC
Confidence 46689999999999999999984 3899999999999999988742 4699999999874211 11159999999
Q ss_pred CCCCCC
Q 020573 275 PYIPSD 280 (324)
Q Consensus 275 PYi~~~ 280 (324)
||..+.
T Consensus 114 PY~iss 119 (272)
T PRK00274 114 PYNITT 119 (272)
T ss_pred CccchH
Confidence 997653
No 140
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.2e-11 Score=99.37 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+...+++++|||||.|.+.++.+.. .+..|+|+|++++|++++++|++...++ +.+++.|..+.... .+.||..|
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEE
Confidence 4556889999999999999777663 5678999999999999999999988775 79999999875443 47999999
Q ss_pred EcCCCCCCC
Q 020573 272 SNPPYIPSD 280 (324)
Q Consensus 272 sNPPYi~~~ 280 (324)
.||||....
T Consensus 120 iNppFGTk~ 128 (185)
T KOG3420|consen 120 INPPFGTKK 128 (185)
T ss_pred ecCCCCccc
Confidence 999997543
No 141
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.18 E-value=3.1e-10 Score=107.84 Aligned_cols=103 Identities=16% Similarity=0.027 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++...+..+...++.+..+++.+. +. ...||+|+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-~~~FD~V~ 193 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-LYAFDTVF 193 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-CCCcCEEE
Confidence 3456789999999999999998876 23 489999999999887654433333345688888887653 32 24899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++ .+..|-+. ...+++++++.|||||.
T Consensus 194 s~--------------gvL~H~~d------------p~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 194 SM--------------GVLYHRKS------------PLEHLKQLKHQLVIKGE 220 (314)
T ss_pred Ec--------------chhhccCC------------HHHHHHHHHHhcCCCCE
Confidence 95 33344322 23578899999999994
No 142
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=1.7e-10 Score=107.30 Aligned_cols=123 Identities=19% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHH----HcC
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLGS----KGSIIAVDLNPLAAAVAAFNAQ----RYG 244 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~----iai~la~~~~p----~~~V~gvDis~~al~~Ar~N~~----~~g 244 (324)
+.+.+.++..+........+.+|+|+|||||- +++.+++.+.. +.+|+|+|+|+.|++.|++++- ..+
T Consensus 81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~ 160 (264)
T smart00138 81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELED 160 (264)
T ss_pred HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhc
Confidence 34555554433121112234699999999996 66667765421 4789999999999999998641 011
Q ss_pred ----------------------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 245 ----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 245 ----------------------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
+.++|+|.++|+.+... ..++||+|+|. .|..|-+
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~cr--------------nvl~yf~-------- 217 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCR--------------NVLIYFD-------- 217 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEec--------------hhHHhCC--------
Confidence 22469999999987533 24789999993 2222211
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-....+++++.++.|+|||+
T Consensus 218 --~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 218 --EPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred --HHHHHHHHHHHHHHhCCCeE
Confidence 12234789999999999995
No 143
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.16 E-value=3.3e-10 Score=86.72 Aligned_cols=99 Identities=24% Similarity=0.364 Sum_probs=77.9
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+++|+|||+|.++..+++ . ...+++++|+++.++..++++....+ ..+++++.+|+.+......++||+|++|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999988 3 56899999999999999986544443 34699999999876532246899999999875
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .+....+++.+.+.|++||+
T Consensus 78 ~~-------------------------~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 78 HL-------------------------VEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred eh-------------------------hhHHHHHHHHHHHHcCCCCE
Confidence 31 12344688888999999984
No 144
>PRK03612 spermidine synthase; Provisional
Probab=99.16 E-value=2.7e-10 Score=115.42 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-----cCC-CCcEEEEEcccccccccCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-----YGL-QDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-----~gl-~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
++++|||+|||+|..+..+++. ++..+|+++|+|+++++.|++|... ..+ .++++++.+|..+.+....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4679999999999999999875 2337999999999999999996321 122 25799999999886654457999
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++|+|......... . ..+++++.+.++|||||+
T Consensus 376 vIi~D~~~~~~~~~~~------L---------------~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 376 VIIVDLPDPSNPALGK------L---------------YSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred EEEEeCCCCCCcchhc------c---------------chHHHHHHHHHhcCCCeE
Confidence 9999987532111000 1 124678888999999995
No 145
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=1.1e-10 Score=102.85 Aligned_cols=98 Identities=20% Similarity=0.132 Sum_probs=74.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
-.+++|+|||.|.++..||.+. .+++++|+|+.|++.|++.+... + +|+++++|+-+..+ .++||+||.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dvp~~~P--~~~FDLIV~--- 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--P-HVEWIQADVPEFWP--EGRFDLIVL--- 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT-----SS-EEEEEE---
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcCCCCCC--CCCeeEEEE---
Confidence 3589999999999999999986 68999999999999999987643 3 59999999977654 479999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||..|-. ..+.++.++......|+|||.
T Consensus 113 -----------SEVlYYL~---------~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 113 -----------SEVLYYLD---------DAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp -----------ES-GGGSS---------SHHHHHHHHHHHHHTEEEEEE
T ss_pred -----------ehHhHcCC---------CHHHHHHHHHHHHHHhCCCCE
Confidence 57767632 246778899999999999994
No 146
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.15 E-value=4.6e-10 Score=101.14 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEcccccccccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----------GLQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-----------gl~~rv~~~~gD~~~~l~~~ 263 (324)
++.+|||+|||.|..++.||++ +.+|+|+|+|+.|++.+....... .-..+|+++++|+++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4569999999999999999985 579999999999999864321100 01235999999998854322
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||.|+-.--+ ..++++ .-..+++...++|||||+
T Consensus 111 ~~~fD~i~D~~~~------~~l~~~------------------~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 111 LGPVDAVYDRAAL------IALPEE------------------MRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCcCEEEechhh------ccCCHH------------------HHHHHHHHHHHHcCCCCe
Confidence 3578988863111 122222 234688999999999994
No 147
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.14 E-value=1.4e-10 Score=102.91 Aligned_cols=95 Identities=25% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|.|||||+|..+-.|++++ |.+.|+|+|-|++|++.|++. +. +++|.++|..+.-+ +..+|+|++|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp-~~~f~~aDl~~w~p--~~~~dllfaN- 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LP-DATFEEADLRTWKP--EQPTDLLFAN- 99 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CC-CCceecccHhhcCC--CCccchhhhh-
Confidence 45689999999999999999998 899999999999999998654 23 49999999877544 3689999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..|-|.- -+++..-...|.|||+
T Consensus 100 -------------AvlqWlpdH------------~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 100 -------------AVLQWLPDH------------PELLPRLVSQLAPGGV 124 (257)
T ss_pred -------------hhhhhcccc------------HHHHHHHHHhhCCCce
Confidence 334555532 1456666788999995
No 148
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.13 E-value=5.7e-10 Score=100.58 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
...+.+..++ ......++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++....+..+++.+..+|+.
T Consensus 47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 3444455554 2211234679999999999999999886 25799999999999999999988887677999999943
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
. ..+.||+|+++=.
T Consensus 123 ~----~~~~fD~v~~~~~ 136 (230)
T PRK07580 123 S----LLGRFDTVVCLDV 136 (230)
T ss_pred h----ccCCcCEEEEcch
Confidence 2 2368999998633
No 149
>PLN02366 spermidine synthase
Probab=99.12 E-value=1.5e-09 Score=103.05 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCceeEEe-cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
.-+.|.|.= +..-+|..+.++..+-+-..+ |.....++..+ .......+++||++|||.|.++..+++. .+..+|+
T Consensus 43 ~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~d-e~~Y~e~l~h~-~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~ 119 (308)
T PLN02366 43 KSDFQDVLVFESATYGKVLVLDGVIQLTERD-ECAYQEMITHL-PLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQID 119 (308)
T ss_pred cCCCeeEEEEEcCCCceEEEECCEeeecCcc-HHHHHHHHHHH-HHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEE
Confidence 346666533 222235666666554333333 33333333222 1111234679999999999999999986 3457899
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
.||+++++++.|++..... ++ .+|++++.+|..+.+... .++||+|+++.+-- .. |.
T Consensus 120 ~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp-~~-------------~~----- 180 (308)
T PLN02366 120 ICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDP-VG-------------PA----- 180 (308)
T ss_pred EEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCC-CC-------------ch-----
Confidence 9999999999999987643 23 358999999987765443 46899999974311 00 00
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.--..+.+++.+.+.|+|||+
T Consensus 181 ---~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 181 ---QELFEKPFFESVARALRPGGV 201 (308)
T ss_pred ---hhhhHHHHHHHHHHhcCCCcE
Confidence 011235788899999999995
No 150
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.11 E-value=6.1e-10 Score=98.00 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------c-cCCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------K-DVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~-~~~~~ 266 (324)
.++.+|||+|||+|.++..+++.+.+.++|+|+|+|+.+ .. .+++++++|+.+.. . ...++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 457799999999999999999886556789999999854 12 24888999986531 0 11357
Q ss_pred eeEEEEcC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 267 LSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 267 fDlIVsNP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+|++|+ ++........+ ..++..+.++..+.++|+|||.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHL-----------------RSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ccEEEcCCCCCCCCCccccHH-----------------HHHHHHHHHHHHHHHHccCCCE
Confidence 99999985 33211111000 0123456789999999999994
No 151
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.11 E-value=8.3e-10 Score=104.47 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=83.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
|.+.+.+.+.+.+.. ... ..+.+|||+|||+|..+..+++.+....+|+|+|+|++|++.|++++......-++.++
T Consensus 44 r~E~~il~~~~~~ia-~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 44 RTEAAILERHADEIA-AAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHH-Hhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 455566665555544 211 23568999999999999999998632579999999999999999998764322347889
Q ss_pred EcccccccccCCCCe---e--EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDVEGKL---S--GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~~~~f---D--lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+.+... ..+ + ++++.-. +. .++ .+....+++++.++|+|||+
T Consensus 121 ~gD~~~~~~~~-~~~~~~~~~~~~~gs~------~~-------~~~-----------~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 121 CADFTQPLALP-PEPAAGRRLGFFPGST------IG-------NFT-----------PEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred EEcccchhhhh-cccccCCeEEEEeccc------cc-------CCC-----------HHHHHHHHHHHHHhcCCCCE
Confidence 99998754321 222 2 3332111 11 111 22345789999999999994
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=1.1e-09 Score=105.29 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=96.9
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
...|.|.|.-.. ..++.+.++..+-+--.+...+.+.+.... . .....+.+||++|||.|..+..+.+. .+..+|+
T Consensus 103 ~~S~yQ~I~I~e-t~~~~L~LDG~~Q~se~DE~iYHE~Lvhp~-m-~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It 178 (374)
T PRK01581 103 EKSNYQNINLLQ-VSDIRLYLDKQLQFSSVDEQIYHEALVHPI-M-SKVIDPKRVLILGGGDGLALREVLKY-ETVLHVD 178 (374)
T ss_pred cCCCCceEEEEE-cCCEEEEECCeeccccccHHHHHHHHHHHH-H-HhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEE
Confidence 345777764311 112345555544333223222233322211 0 01234579999999999998888875 3567999
Q ss_pred EEeCCHHHHHHHHHHH-----HHcCC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccc
Q 020573 225 AVDLNPLAAAVAAFNA-----QRYGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298 (324)
Q Consensus 225 gvDis~~al~~Ar~N~-----~~~gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL 298 (324)
+||+++++++.|+++- .+..+ .+|++++.+|..+.+....++||+|++|.|--..... .
T Consensus 179 ~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~-----~---------- 243 (374)
T PRK01581 179 LVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELL-----S---------- 243 (374)
T ss_pred EEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccch-----h----------
Confidence 9999999999999621 11122 4689999999998766556789999999653111000 0
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 299 DGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 299 ~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
--.-+.+++.+.+.|+|||+
T Consensus 244 ------~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 244 ------TLYTSELFARIATFLTEDGA 263 (374)
T ss_pred ------hhhHHHHHHHHHHhcCCCcE
Confidence 01124688899999999995
No 153
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=107.48 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=82.8
Q ss_pred eeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 163 ~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+.++.-+|.||-.+|-. .+.+.. ..+.+|+|+++|.|.+++.+|+. ....|+|+|+||.|++..++|++.
T Consensus 164 vD~~Kv~Fsprl~~ER~--Rva~~v------~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~L 233 (341)
T COG2520 164 VDVAKVYFSPRLSTERA--RVAELV------KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRL 233 (341)
T ss_pred EchHHeEECCCchHHHH--HHHhhh------cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHh
Confidence 34455688898666642 122222 13679999999999999999996 334599999999999999999999
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++.+++..++||..+..... +.+|-|++|-|..
T Consensus 234 N~v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~ 267 (341)
T COG2520 234 NKVEGRVEPILGDAREVAPEL-GVADRIIMGLPKS 267 (341)
T ss_pred cCccceeeEEeccHHHhhhcc-ccCCEEEeCCCCc
Confidence 999999999999998866543 6899999997763
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.10 E-value=7.4e-10 Score=103.22 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+.+||++|||+|.++..+++.. +..+|+++|+++++++.|+++....+ + ..+++++.+|..+.+....++||+||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35699999999999999888863 46789999999999999999886542 1 24689999998776554457999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++.-.... .. + ..+.+++.+.+.|+|||+
T Consensus 151 ~D~~~~~~~~--------------~~-------l-~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 151 VDSTDPVGPA--------------ET-------L-FTKEFYELLKKALNEDGI 181 (270)
T ss_pred EeCCCCCCcc--------------cc-------h-hHHHHHHHHHHHhCCCcE
Confidence 9976421100 00 0 124678888999999995
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=9e-10 Score=99.61 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------------QDIIEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl--------------~~rv~~~~gD~~~~l 260 (324)
++.+|||+|||.|..++.||++ +.+|+|||+|+.|++.+.. ++++ ..+|++.++|+++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 3569999999999999999985 5899999999999998642 2222 246999999999864
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
....+.||.|+-- ..+..++++ .-..+++...++|+|||+
T Consensus 111 ~~~~~~fd~v~D~------~~~~~l~~~------------------~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 111 AADLADVDAVYDR------AALIALPEE------------------MRERYVQQLAALLPAGCR 150 (218)
T ss_pred cccCCCeeEEEeh------HhHhhCCHH------------------HHHHHHHHHHHHcCCCCe
Confidence 3333578988851 111222222 234688899999999984
No 156
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.09 E-value=7.6e-10 Score=103.13 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p--~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+|||+|||+|.++..+++.++. ..+|+|+|+|+.|++.|+++. .++.+..+|..+ ++...++||+|+++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~-lp~~~~sfD~I~~~ 158 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHR-LPFADQSLDAIIRI 158 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeeccc-CCCcCCceeEEEEe
Confidence 468999999999999999987522 247999999999999998752 248899999876 33334689999984
No 157
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-09 Score=96.14 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred ccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 158 f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|-+..+-+..+..|-.|. ++-.+.+++ ...++.+|||+|||||+.+..+|+.. .+|+++|+.++..+.|+
T Consensus 42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~ 111 (209)
T COG2518 42 YEDRALPIGCGQTISAPH---MVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR 111 (209)
T ss_pred ccCCcccCCCCceecCcH---HHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence 345556666777776664 444445544 34467899999999999999999985 49999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+|++..|+.| |.++++|-...++. ...||.|+.+
T Consensus 112 ~~L~~lg~~n-V~v~~gDG~~G~~~-~aPyD~I~Vt 145 (209)
T COG2518 112 RNLETLGYEN-VTVRHGDGSKGWPE-EAPYDRIIVT 145 (209)
T ss_pred HHHHHcCCCc-eEEEECCcccCCCC-CCCcCEEEEe
Confidence 9999999987 99999999887765 4799999985
No 158
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1.7e-09 Score=96.49 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++..+...+++++|+++.+++.++++.. ...+++++.+|+.+.. ...++||+|+++=
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP-FEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC-CCCCcEEEEEEee
Confidence 46799999999999999999986322799999999999999999876 3356999999988743 2246899999851
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .+. .....+++.+.+.|+|||+
T Consensus 115 ~~--------------~~~------------~~~~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 115 GL--------------RNV------------TDIQKALREMYRVLKPGGR 138 (223)
T ss_pred ee--------------CCc------------ccHHHHHHHHHHHcCCCcE
Confidence 11 111 1234688999999999994
No 159
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.05 E-value=1.2e-09 Score=106.09 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=67.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
.+|||++||||..++.++++.+...+|+++|+|++|++.+++|++.+++. ++++.++|....+.....+||+|..||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 48999999999999999998423368999999999999999999999886 4999999998766544468999999994
No 160
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.04 E-value=1.9e-09 Score=97.64 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++|+...+. ++.+..+|+.+......++||+|+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEh
Confidence 35678999999999999999875 36899999999999999999987776 48888888866432234689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.+ .|-+. ...+++.+.++|+|||+
T Consensus 122 ~~l--------------~~~~~------------~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 122 EML--------------EHVPD------------PASFVRACAKLVKPGGL 146 (233)
T ss_pred hHh--------------hccCC------------HHHHHHHHHHHcCCCcE
Confidence 222 22111 12567888888999884
No 161
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.04 E-value=2.6e-09 Score=95.94 Aligned_cols=100 Identities=22% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++.+..+|+.+......++||+|+++-
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4679999999999999998875 257999999999999999999887764 488999987664333236899999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|.+ ....+++.+.+.|++||.
T Consensus 121 ~l--------------~~~~------------~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 121 VL--------------EHVP------------DPQAFIRACAQLLKPGGI 144 (224)
T ss_pred HH--------------HhCC------------CHHHHHHHHHHhcCCCcE
Confidence 21 2211 123677888888999884
No 162
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=1.4e-09 Score=108.99 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~~~fDlIVsN 273 (324)
.+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++ .++...++.++++|+.+. ++...++||+|++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 45689999999999999999874 589999999999987654 233334699999998642 22234689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++. |-+ -+....+++++.++|||||+
T Consensus 111 ~~l~--------------~l~----------~~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 111 WLLM--------------YLS----------DKEVENLAERMVKWLKVGGY 137 (475)
T ss_pred hhHH--------------hCC----------HHHHHHHHHHHHHhcCCCeE
Confidence 6642 111 11234789999999999995
No 163
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=97.43 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~ 251 (324)
|.++.+.+...+...+ ....|+|..||.|.-++..|... ..|+++|++|.-++.|++|++-+|+++||.|
T Consensus 78 pe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred cHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 4556666666655543 24589999999999999999875 6899999999999999999999999999999
Q ss_pred EEcccccccccC---CCCeeEEEEcCCCCCCC
Q 020573 252 RQGSWFGKLKDV---EGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 252 ~~gD~~~~l~~~---~~~fDlIVsNPPYi~~~ 280 (324)
++|||++....+ ...+|++..-||+...+
T Consensus 148 I~GD~ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 148 ICGDFLDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred EechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 999998754332 34578999999987543
No 164
>PTZ00146 fibrillarin; Provisional
Probab=98.99 E-value=4.6e-09 Score=98.39 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
.-|...++.-+ ......++.+|||+|||+|.++..++...++..+|+|||+++.+++...+.++.. .+|.++.+|.
T Consensus 115 SKlaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 115 SKLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred cHHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34444444333 2223345679999999999999999999877789999999998665444443322 3488999998
Q ss_pred cccc--ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l--~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. ....+.||+|+++-. +| +..+.++.++.++|||||.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva-----------------~p-----------dq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA-----------------QP-----------DQARIVALNAQYFLKNGGH 232 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC-----------------Cc-----------chHHHHHHHHHHhccCCCE
Confidence 6542 112357999999631 11 1223456678999999984
No 165
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.99 E-value=2.6e-09 Score=107.39 Aligned_cols=147 Identities=23% Similarity=0.269 Sum_probs=99.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
...|.||..++++++.+.. ....+|+|.+||||.+.+..++.++. +..++|.|+++....+|+.|+-.+
T Consensus 166 GEfyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 166 GEFYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred CccCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 4578899999988887653 12348999999999999999887732 367999999999999999999999
Q ss_pred CCCCcEEEEEccccccccc----CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC-CCCcHHHHHHHHHHHhcc
Q 020573 244 GLQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG-GVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~----~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g-g~dGl~~~~~il~~a~~~ 318 (324)
|+...+....+|-+..... ..++||+|++||||.........-.. ....+....| ..-.-.....++++...+
T Consensus 238 gi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~af~~h~~~~ 315 (489)
T COG0286 238 GIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLES--EQDERFFFYGVFPTKNSADLAFLQHILYK 315 (489)
T ss_pred CCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccc--cccccccccCCCCCCCchHHHHHHHHHHh
Confidence 9874467777776653322 23679999999999733322211000 0111111111 111122224577777888
Q ss_pred cCCCC
Q 020573 319 LKPDK 323 (324)
Q Consensus 319 LkpgG 323 (324)
|+|||
T Consensus 316 l~~~g 320 (489)
T COG0286 316 LKPGG 320 (489)
T ss_pred cCCCc
Confidence 88876
No 166
>PRK05785 hypothetical protein; Provisional
Probab=98.98 E-value=1.9e-09 Score=97.94 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.|+++ ..++++|+.+ ++..+++||+|+++-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~-lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEA-LPFRDKSFDVVMSSF 118 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhh-CCCCCCCEEEEEecC
Confidence 5699999999999999999874 47999999999999999864 1346788765 344457999999963
No 167
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.97 E-value=2.9e-09 Score=98.24 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCee---EE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLS---GV 270 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fD---lI 270 (324)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.++.+... ..+++++++|+.+... ..+| +|
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~---~~~d~~~~v 98 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL---PDFPKQLKV 98 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh---hHcCCcceE
Confidence 346799999999999999999974 4699999999999999988743 3469999999977422 2466 99
Q ss_pred EEcCCCCCC
Q 020573 271 VSNPPYIPS 279 (324)
Q Consensus 271 VsNPPYi~~ 279 (324)
++|+||..+
T Consensus 99 vsNlPy~i~ 107 (253)
T TIGR00755 99 VSNLPYNIS 107 (253)
T ss_pred EEcCChhhH
Confidence 999999643
No 168
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=2.2e-09 Score=97.51 Aligned_cols=76 Identities=33% Similarity=0.384 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~---~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
++.+|||+|||+|.++..+++.. +++.+|+|+|+|++|++.|+++....+ +++..++... +....++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~-l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDE-LVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccc-ccccCCCccEEE
Confidence 45699999999999999988643 345699999999999999998865443 4444444322 122246899999
Q ss_pred EcCC
Q 020573 272 SNPP 275 (324)
Q Consensus 272 sNPP 275 (324)
+|--
T Consensus 135 ~~~~ 138 (232)
T PRK06202 135 SNHF 138 (232)
T ss_pred ECCe
Confidence 9844
No 169
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.92 E-value=3.4e-09 Score=89.52 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|.++..+++. ..+|+|+|+++.+++. . ++.....+..+.. ...++||+|+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPP-FPDGSFDLIICN 85 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---------T--TSEEEEEECHTHH-CHSSSEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhh-ccccchhhHhhH
Confidence 35679999999999999999775 2499999999999987 1 1222222111111 124799999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-| ....+++.+.++|||||+
T Consensus 86 --------------~~l~~~~------------d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 86 --------------DVLEHLP------------DPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp --------------SSGGGSS------------HHHHHHHHHHHCEEEEEE
T ss_pred --------------HHHhhcc------------cHHHHHHHHHHhcCCCCE
Confidence 3334432 345789999999999995
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.91 E-value=6.3e-09 Score=103.43 Aligned_cols=103 Identities=23% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCeEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~---~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..|+|+|||+|.+....++. .+...+|+|||.|+.|+...++.++.++..++|+++++|+.+.-. ..++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 568999999999998776654 223579999999999998888888899999999999999987433 359999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++......+| .....+..+-++|||||+
T Consensus 265 -----------ElLGsfg~nE-------------l~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 265 -----------ELLGSFGDNE-------------LSPECLDAADRFLKPDGI 292 (448)
T ss_dssp --------------BTTBTTT-------------SHHHHHHHGGGGEEEEEE
T ss_pred -----------eccCCccccc-------------cCHHHHHHHHhhcCCCCE
Confidence 1111121221 223567888899999985
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.90 E-value=8.5e-09 Score=89.91 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhhh--cCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEE
Q 020573 175 ETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDIIE 250 (324)
Q Consensus 175 ~te~lve~l~~~l~~--~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l~~rv~ 250 (324)
-+..+.+.+...... ......+.+|||||||+|..++.+++.. ...+|+..|.++ .++..+.|++.|+ ...++.
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 344555555542100 1123457899999999999999999974 568999999998 9999999999987 667799
Q ss_pred EEEcccccccc--c-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 251 IRQGSWFGKLK--D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 251 ~~~gD~~~~l~--~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+..-||.+... . ...+||+|++ .++ .|.+. .+..++....++|+++|
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~Ila--------------sDv-~Y~~~-----------~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILA--------------SDV-LYDEE-----------LFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEE--------------ES---S-GG-----------GHHHHHHHHHHHBTT-T
T ss_pred CcEEEecCcccccccccccCCEEEE--------------ecc-cchHH-----------HHHHHHHHHHHHhCCCC
Confidence 99999977431 1 1358999998 344 23322 34467777778888876
No 172
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.90 E-value=6.8e-09 Score=98.34 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..+++.|||+|||+|.+++..|+. ...+|+|||.|.-+ +.|++.++.|++.+.|++++|...+..-+ .+++|+|||
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-ccceeEEee
Confidence 457889999999999999999997 36899999998665 99999999999999999999998874222 479999999
No 173
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.3e-08 Score=96.72 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=104.7
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 165 v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
...|.+++.....+++-.+++ ..++.+|||+|++.|.=+..+|+.... ...|+++|+++.-+...++|+++.
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~-------p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLD-------PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcC-------CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 455666666666666665553 335789999999999999999998633 256799999999999999999999
Q ss_pred CCCCcEEEEEccccccccc--CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc---H-HHHHHHHHHHhc
Q 020573 244 GLQDIIEIRQGSWFGKLKD--VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG---L-DYLLHLCNGTAS 317 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG---l-~~~~~il~~a~~ 317 (324)
|+.+ +.+.+.|....... ..++||.|+.++|+...+.+ +..|.....-..+- + ..-..|+..|.+
T Consensus 206 G~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~i--------rr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 206 GVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVI--------RRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred CCCc-eEEEecccccccccccccCcCcEEEECCCCCCCccc--------ccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9987 88888876532211 12369999999999877665 33333322222221 2 233689999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||.
T Consensus 277 ~lk~GG~ 283 (355)
T COG0144 277 LLKPGGV 283 (355)
T ss_pred hcCCCCE
Confidence 9999995
No 174
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.85 E-value=1e-08 Score=91.44 Aligned_cols=115 Identities=25% Similarity=0.309 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+.+.+++.+ .. ....+.-|||+|||||.-+-.+... +-..+|+|+|+.|+++|.+ +.. + -.++.+|+-+
T Consensus 36 m~eRaLELL-al-p~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~--e--gdlil~DMG~ 104 (270)
T KOG1541|consen 36 MAERALELL-AL-PGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--REL--E--GDLILCDMGE 104 (270)
T ss_pred HHHHHHHHh-hC-CCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhh--h--cCeeeeecCC
Confidence 344445544 21 2224678999999999999887664 4789999999999999997 222 1 3578889988
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccch----hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQ----VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~----~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.++...+.||.+|+ ++.+| ..-..|.|+.. +..|+...+..|++|+
T Consensus 105 GlpfrpGtFDg~IS---------ISAvQWLcnA~~s~~~P~~R----------l~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 105 GLPFRPGTFDGVIS---------ISAVQWLCNADKSLHVPKKR----------LLRFFGTLYSCLKRGA 154 (270)
T ss_pred CCCCCCCccceEEE---------eeeeeeecccCccccChHHH----------HHHHhhhhhhhhccCc
Confidence 88877899999888 22222 12224555543 3367777788888876
No 175
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.81 E-value=1.7e-08 Score=89.80 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=78.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeEEEEcCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSNPP 275 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsNPP 275 (324)
.+||+|||.|.+.+.+|+.. |+..++|+|+....+..|.+.+.+.++.| +.++++|+...+.. ..+++|.|..|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 79999999999999999996 99999999999999999999999999975 99999998874432 1478999999854
Q ss_pred --CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 --YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 --Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|-.. +|.-+. +. -..+++..++.|+|||.
T Consensus 98 DPWpK~-----------rH~krR-l~--------~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 98 DPWPKK-----------RHHKRR-LV--------NPEFLELLARVLKPGGE 128 (195)
T ss_dssp ----SG-----------GGGGGS-TT--------SHHHHHHHHHHEEEEEE
T ss_pred CCCccc-----------chhhhh-cC--------CchHHHHHHHHcCCCCE
Confidence 3221 111111 11 12678888899999984
No 176
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.81 E-value=1.7e-08 Score=94.85 Aligned_cols=142 Identities=20% Similarity=0.316 Sum_probs=101.8
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.+........++-.++. ..++.+|||+|+|.|.-+..++......+.|+++|+++.-+...+.|+++.|+.
T Consensus 64 ~G~~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred CCcEEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 3444444455555554443 235678999999999999999998866789999999999999999999999987
Q ss_pred CcEEEEEccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhccc--
Q 020573 247 DIIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASML-- 319 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~L-- 319 (324)
+ +.....|....... ....||.|+.++|....+.+ +..|.....-....+ ..-+++++.|.+++
T Consensus 137 ~-v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i--------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~ 207 (283)
T PF01189_consen 137 N-VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTI--------RRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNI 207 (283)
T ss_dssp S-EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGT--------TTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHH
T ss_pred e-EEEEeeccccccccccccccchhhcCCCccchhhh--------hhccchhhcccccccchHHHHHHHHHHHHHHhhcc
Confidence 6 88888887664322 12369999999999876543 233333322122222 23368999999999
Q ss_pred --CCCCC
Q 020573 320 --KPDKW 324 (324)
Q Consensus 320 --kpgG~ 324 (324)
||||+
T Consensus 208 ~~k~gG~ 214 (283)
T PF01189_consen 208 DFKPGGR 214 (283)
T ss_dssp HBEEEEE
T ss_pred cccCCCe
Confidence 99984
No 177
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=5.3e-08 Score=87.44 Aligned_cols=115 Identities=16% Similarity=0.252 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|+--.+++.+.+.+ .++++||+|+=+|+-+++.|..++++++|+++|+++++.+++.+-.+..|+..+|.+++
T Consensus 59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 34445666666655 46799999999999999999999889999999999999999999999999999999999
Q ss_pred cccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+..+.+.++ .+.||+++.+ ... +.|-...+++.++||+||+
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvD----------adK-------------------~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVD----------ADK-------------------DNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEc----------cch-------------------HHHHHHHHHHHhhcccccE
Confidence 9998765432 4689999983 000 1223577888899999995
No 178
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=1.7e-08 Score=90.39 Aligned_cols=117 Identities=18% Similarity=0.304 Sum_probs=88.5
Q ss_pred eeeeCCccccc-chHHHHHHHHHHHhhhcCCCC--CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 163 LSVEEGVFIPR-PETELMVDLVSDVLVRDNDGL--RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 163 ~~v~~~vliPr-p~te~lve~l~~~l~~~~~~~--~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
..+.++.+.|- |...-++..+.+++....... +..++||+|+|.-||--.+..+- -+++.+|.|+++.+++.|+.|
T Consensus 43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred ecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHH
Confidence 45677888874 777778888888774322222 44589999999999887666542 468999999999999999999
Q ss_pred HHHc-CCCCcEEEEEcc----cccccccCCCCeeEEEEcCCCCCCC
Q 020573 240 AQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 240 ~~~~-gl~~rv~~~~gD----~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
+..| +++..+++.... .|..+....++||+++|||||+.+.
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhH
Confidence 9998 888778876542 3333433357999999999998764
No 179
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.78 E-value=1.7e-08 Score=88.67 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||||||.|.+...|.+. .+..++|+|++++.+..+.++ | +.++++|+.+.+.. .+++||+||.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 4679999999999999999886 579999999999988776654 3 77999999887753 36799999985
No 180
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.77 E-value=2.5e-08 Score=88.15 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNP 274 (324)
+.+|||+|||+|.++..+++.. ...++|+|+++++++.|+++ +++++++|+.+.+. ...++||+|++|.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 5689999999999999988753 46889999999999888642 36788888865332 2246899999997
Q ss_pred CCC
Q 020573 275 PYI 277 (324)
Q Consensus 275 PYi 277 (324)
.+.
T Consensus 84 ~l~ 86 (194)
T TIGR02081 84 TLQ 86 (194)
T ss_pred HhH
Confidence 653
No 181
>PLN02823 spermine synthase
Probab=98.77 E-value=9e-08 Score=91.88 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g---l~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+++||.+|+|.|..+..+.+.. +..+|+.||++++.+++|+++...++ -.+|++++.+|..+.+....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45689999999999999888863 55789999999999999999875432 246899999999987765567899999
Q ss_pred EcC
Q 020573 272 SNP 274 (324)
Q Consensus 272 sNP 274 (324)
.+.
T Consensus 182 ~D~ 184 (336)
T PLN02823 182 GDL 184 (336)
T ss_pred ecC
Confidence 985
No 182
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=4.4e-08 Score=81.69 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE-
Q 020573 195 RDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS- 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs- 272 (324)
++.+++|+|||+|. ++..|++. +..|+|+|+++.+++.|+++ .++++.+|+|++-..+-+.+|+|.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 45689999999996 88888864 47999999999999888776 2789999999976655678999988
Q ss_pred cCC
Q 020573 273 NPP 275 (324)
Q Consensus 273 NPP 275 (324)
+||
T Consensus 85 rpp 87 (134)
T PRK04148 85 RPP 87 (134)
T ss_pred CCC
Confidence 444
No 183
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=5.5e-08 Score=88.28 Aligned_cols=103 Identities=11% Similarity=-0.037 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-----cCCCCcEEEEEcccccccc--
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ------R-----YGLQDIIEIRQGSWFGKLK-- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~------~-----~gl~~rv~~~~gD~~~~l~-- 261 (324)
++.+||++|||.|.-++.||.. +.+|+|+|+|+.|++.+.+... . .--..+++++++|+|+.-.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4579999999999999999996 4689999999999998865210 0 0012359999999998532
Q ss_pred cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 ~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...++||+|+- ...+..++++.+ .++++...+.|+|||.
T Consensus 120 ~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 120 NNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQ 158 (226)
T ss_pred cccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcE
Confidence 22368999764 223334444443 3678888999999984
No 184
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.75 E-value=2e-08 Score=90.77 Aligned_cols=103 Identities=24% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEcccccccccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF-NAQRYG----------LQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~-N~~~~g----------l~~rv~~~~gD~~~~l~~~ 263 (324)
.+.+||++|||.|.-...||.+ +.+|+|+|+|+.|++.|.+ |..... -..+|+++++|+|+.-...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4569999999999999999986 4799999999999999843 221010 1236899999999854443
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||+|+= ...+..++++.+. ++.+...++|+|||.
T Consensus 114 ~g~fD~iyD------r~~l~Alpp~~R~------------------~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYD------RTFLCALPPEMRE------------------RYAQQLASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEE------CSSTTTS-GGGHH------------------HHHHHHHHCEEEEEE
T ss_pred cCCceEEEE------ecccccCCHHHHH------------------HHHHHHHHHhCCCCc
Confidence 468999985 3445566665533 678888999999984
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.73 E-value=3.3e-08 Score=93.15 Aligned_cols=95 Identities=27% Similarity=0.365 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+++.+ ...+++.++|.+||.|..+..+++.++++++|+|+|.+++|++.|++++.. .++++++++|+.
T Consensus 6 Vll~Evl~~L----~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 6 VLLDEVVDAL----AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred ccHHHHHHhh----CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 4566666665 223467999999999999999999875578999999999999999998765 367999999997
Q ss_pred cccccCC---CCeeEEEEcCCCCCC
Q 020573 258 GKLKDVE---GKLSGVVSNPPYIPS 279 (324)
Q Consensus 258 ~~l~~~~---~~fDlIVsNPPYi~~ 279 (324)
+...... .++|+|++|.-+...
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCcccc
Confidence 6432222 279999999876543
No 186
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.71 E-value=7.8e-08 Score=90.45 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=68.6
Q ss_pred cCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeE
Q 020573 190 DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG 269 (324)
Q Consensus 190 ~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDl 269 (324)
+..+..++.|+|+|||||.++...|+. ...+|++||.| +|.+.|++-++.|.+.+||.++.|...+. + +.++.|+
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-e-LPEk~Dv 246 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-E-LPEKVDV 246 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-c-CchhccE
Confidence 334567889999999999999999987 46899999997 68899999999999999999999998763 2 3479999
Q ss_pred EEEcC
Q 020573 270 VVSNP 274 (324)
Q Consensus 270 IVsNP 274 (324)
||+-|
T Consensus 247 iISEP 251 (517)
T KOG1500|consen 247 IISEP 251 (517)
T ss_pred EEecc
Confidence 99965
No 187
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.66 E-value=7.5e-09 Score=92.72 Aligned_cols=94 Identities=23% Similarity=0.241 Sum_probs=67.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNP 274 (324)
-.++||||||||..+..+-... .+++|||||.+|++.|.+. |+-+ .+.+++....+. .-..+||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~A-- 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVA-- 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhh--
Confidence 3589999999999999987764 6899999999999998764 2221 222333222222 11368999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|.-| |..+..++..+...|+|||.
T Consensus 195 ------------aDVl~Y------------lG~Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 195 ------------ADVLPY------------LGALEGLFAGAAGLLAPGGL 220 (287)
T ss_pred ------------hhHHHh------------hcchhhHHHHHHHhcCCCce
Confidence 455444 44566788999999999994
No 188
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.65 E-value=2.2e-07 Score=84.74 Aligned_cols=92 Identities=26% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|+|+|+|+|.++..+++++ |+.+++..|+ |+.++.+++ .+||+++.||+++.++ . +|+++..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---~-~D~~~l~- 165 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---V-ADVYLLR- 165 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---S-ESEEEEE-
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---c-ccceeee-
Confidence 44689999999999999999997 9999999999 889988887 5789999999997654 3 9999882
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCC--C
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPD--K 323 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkpg--G 323 (324)
.|.+.-+ -+....|++++++.|+|| |
T Consensus 166 -------------~vLh~~~----------d~~~~~iL~~~~~al~pg~~g 193 (241)
T PF00891_consen 166 -------------HVLHDWS----------DEDCVKILRNAAAALKPGKDG 193 (241)
T ss_dssp -------------SSGGGS-----------HHHHHHHHHHHHHHSEECTTE
T ss_pred -------------hhhhhcc----------hHHHHHHHHHHHHHhCCCCCC
Confidence 2222111 244568999999999998 7
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.8e-07 Score=86.23 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++..|+|+|+|.|+++..|++.. .+|+++|+++..++..++... ..++++++++|+.+.-.....+++.||+|
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 346799999999999999999974 689999999999999888765 33569999999987422100168999999
Q ss_pred CCCCCCC
Q 020573 274 PPYIPSD 280 (324)
Q Consensus 274 PPYi~~~ 280 (324)
.||.-+.
T Consensus 103 lPY~Iss 109 (259)
T COG0030 103 LPYNISS 109 (259)
T ss_pred CCCcccH
Confidence 9997654
No 190
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=1.5e-07 Score=85.08 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=43.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
..+..+||+||-+|.+++.+|+.|+ ...|+|+||++..+..|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccc
Confidence 3467899999999999999999985 468999999999999999998643
No 191
>PRK10742 putative methyltransferase; Provisional
Probab=98.63 E-value=3.2e-07 Score=83.94 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=69.9
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEcccccccccCCCCeeE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY------G--LQDIIEIRQGSWFGKLKDVEGKLSG 269 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~------g--l~~rv~~~~gD~~~~l~~~~~~fDl 269 (324)
+|||+.+|+|..++.++.. +++|+++|.++.+..+.++|+++. + +..+++++++|..+.+......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 8999999999999999986 477999999999999999999985 2 2357999999998887655558999
Q ss_pred EEEcCCCCCCCC
Q 020573 270 VVSNPPYIPSDD 281 (324)
Q Consensus 270 IVsNPPYi~~~~ 281 (324)
|..+|||-....
T Consensus 168 VYlDPMfp~~~k 179 (250)
T PRK10742 168 VYLDPMFPHKQK 179 (250)
T ss_pred EEECCCCCCCcc
Confidence 999999976543
No 192
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=85.54 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=85.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC--CCCeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~--~~~fDlIVsNP 274 (324)
..+||||||.|.+.+.+|++. |+..++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+ .+++|-|..|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 479999999999999999996 9999999999999999999999999997 5999999998765443 35899999985
Q ss_pred C--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 P--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 P--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| +... +|+-+.- ....+++...+.|+|||.
T Consensus 128 PDPWpKk-----------RH~KRRl---------~~~~fl~~~a~~Lk~gG~ 159 (227)
T COG0220 128 PDPWPKK-----------RHHKRRL---------TQPEFLKLYARKLKPGGV 159 (227)
T ss_pred CCCCCCc-----------ccccccc---------CCHHHHHHHHHHccCCCE
Confidence 4 4322 2322211 234789999999999994
No 193
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.60 E-value=3.2e-07 Score=86.00 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
....+++|||+|||+|+.+..++.+ ....|+|+|-+...+...+--.+..|...++.++ ....+.++. .+.||+|+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-cCCcCEEE
Confidence 3567889999999999999999987 3468999998877665544333334443333333 223344554 57899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
| -.|..|...- + ..+.+..+.|++||
T Consensus 188 ~--------------MGVLYHrr~P--------l----~~L~~Lk~~L~~gG 213 (315)
T PF08003_consen 188 S--------------MGVLYHRRSP--------L----DHLKQLKDSLRPGG 213 (315)
T ss_pred E--------------eeehhccCCH--------H----HHHHHHHHhhCCCC
Confidence 9 4565663321 2 45677789999998
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=2.8e-07 Score=84.64 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++..||++|-|||.++..+... +++|+|+|+++.+++...+.++....+++.+++.||+++.- ...||++|
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P~fd~cV 128 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LPRFDGCV 128 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Ccccceee
Confidence 4456789999999999999999986 47999999999999999988876666789999999998742 24799999
Q ss_pred EcCCCCCCC
Q 020573 272 SNPPYIPSD 280 (324)
Q Consensus 272 sNPPYi~~~ 280 (324)
+|-||--++
T Consensus 129 sNlPyqISS 137 (315)
T KOG0820|consen 129 SNLPYQISS 137 (315)
T ss_pred ccCCccccC
Confidence 999996554
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.57 E-value=5.1e-07 Score=79.55 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhhhcCCC-CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 175 ETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~-~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
..+.+..++++-+...... ....+++|+|||.|.-++.+|-.+ |+.+|+.+|.+..-+...+.-+...|++| +++++
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~ 104 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVIN 104 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEE
Confidence 3445555666544211111 122279999999999999999986 89999999999999999999999999975 99999
Q ss_pred cccccccccCCCCeeEEEE
Q 020573 254 GSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVs 272 (324)
+...+ .....+||+|++
T Consensus 105 ~R~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 105 GRAEE--PEYRESFDVVTA 121 (184)
T ss_dssp S-HHH--TTTTT-EEEEEE
T ss_pred eeecc--cccCCCccEEEe
Confidence 99887 223479999999
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.56 E-value=3.8e-08 Score=88.45 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEcccccccccC-CCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-QDIIEIRQGSWFGKLKDV-EGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl-~~rv~~~~gD~~~~l~~~-~~~fDlIV 271 (324)
..+.+|||-|+|-|+.++..+++ ...+|+.+|.+++.+++|.-|==..++ +.+++++.||..+..+.+ +.+||+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45789999999999999999986 334999999999999999887432222 225899999999877655 45799999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+||-.+-.. .|. -.+|.++.++.|||||.
T Consensus 211 HDPPRfS~Ag--eLY---------------------seefY~El~RiLkrgGr 240 (287)
T COG2521 211 HDPPRFSLAG--ELY---------------------SEEFYRELYRILKRGGR 240 (287)
T ss_pred eCCCccchhh--hHh---------------------HHHHHHHHHHHcCcCCc
Confidence 9999643221 111 12455666899999983
No 197
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.56 E-value=6.2e-08 Score=87.52 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=66.1
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
.++|+|||+|.-++.+|..+ .+|+|+|+|+.|+++|++.-...-......+...+..+ +...++++|+|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~----- 106 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD-LLGGEESVDLITA----- 106 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc-ccCCCcceeeehh-----
Confidence 79999999998888888886 68999999999999988643211111112333333333 2222579999998
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.+..+| -++.++.+.+.++||+.|
T Consensus 107 ---------Aqa~HW-------------Fdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 107 ---------AQAVHW-------------FDLERFYKEAYRVLRKDG 130 (261)
T ss_pred ---------hhhHHh-------------hchHHHHHHHHHHcCCCC
Confidence 232232 245689999999999988
No 198
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=3.1e-07 Score=81.30 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE-IRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~-~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|++|||+|..--..-. .|...|+++|-++.|-++|.+.++.+... ++. |+.++..+...-.++++|.||+-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~T- 152 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCT- 152 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEE-
Confidence 34689999999987655433 27889999999999999999999887443 466 88888766322236899999982
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-|. -. .+..++.+++..++|+|||+
T Consensus 153 -------------lvL--------CS----ve~~~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 153 -------------LVL--------CS----VEDPVKQLNEVRRLLRPGGR 177 (252)
T ss_pred -------------EEE--------ec----cCCHHHHHHHHHHhcCCCcE
Confidence 110 00 12234678888999999994
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.4e-06 Score=81.67 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=82.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.++||-+|-|.|..+..+.+.. +-.+++.||++++.+++|++-..... . ..|++++.+|..+.+.....+||+|+.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3699999999999999999984 67899999999999999999875432 2 478999999999988765568999999
Q ss_pred cC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|- | + -|.-+| +-..|++.+.+.|+++|+
T Consensus 156 D~tdp-~---------------gp~~~L--------ft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 156 DSTDP-V---------------GPAEAL--------FTEEFYEGCRRALKEDGI 185 (282)
T ss_pred cCCCC-C---------------Cccccc--------CCHHHHHHHHHhcCCCcE
Confidence 61 1 1 011111 123688999999999996
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.45 E-value=4.3e-07 Score=83.64 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEcccccccccCCC-CeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL---QDIIEIRQGSWFGKLKDVEG-KLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl---~~rv~~~~gD~~~~l~~~~~-~fDlI 270 (324)
.+++||=+|-|.|..+..+.+.. +..+|+.||+++..++.|++....... .+|++++.+|....+....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46799999999999999998863 467999999999999999998765322 46899999999887776556 89999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.+- +.... .. . .-+.+++.+.+.|+|||+
T Consensus 155 i~D~~d-p~~~~----~~--l---------------~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 155 IVDLTD-PDGPA----PN--L---------------FTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp EEESSS-TTSCG----GG--G---------------SSHHHHHHHHHHEEEEEE
T ss_pred EEeCCC-CCCCc----cc--c---------------cCHHHHHHHHhhcCCCcE
Confidence 997653 21110 00 1 123688889999999985
No 201
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=98.42 E-value=7.8e-07 Score=83.19 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=99.6
Q ss_pred CeeeeeeCCccccc-chHHHHHHHHHHHhhhcCCCCCCCe--EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDGF--WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr-p~te~lve~l~~~l~~~~~~~~~~~--VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
|+...+.++.++|+ |...-++.++.+++ ...+..++.. =+|+|+|.-||--.+.... -++..+++|+++..++.|
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a 142 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA 142 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence 67788899999997 77777888888887 3332222222 4899999999887776553 568999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccc-----cc-CCCCeeEEEEcCCCCCCCCccc--chhhhhcccccccccCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKL-----KD-VEGKLSGVVSNPPYIPSDDISG--LQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l-----~~-~~~~fDlIVsNPPYi~~~~~~~--l~~ev~~~eP~~aL~gg~ 302 (324)
..|+.++++++++.+++.+-.+.+ .. .+..||+..|||||-....-.. -...-++--|+.+..||.
T Consensus 143 ~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~ 216 (419)
T KOG2912|consen 143 KSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGS 216 (419)
T ss_pred hccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccch
Confidence 999999999998888876432211 11 1346999999999976522111 112223455666666664
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.41 E-value=2.3e-06 Score=76.74 Aligned_cols=72 Identities=35% Similarity=0.478 Sum_probs=57.4
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
|+|+||--|++++.|.+. +.-.+|+++|+++..++.|++|++++|+.+++++..||-++.+.. .+..|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE
Confidence 689999999999999997 455689999999999999999999999999999999999887765 123787776
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=2.4e-06 Score=76.86 Aligned_cols=97 Identities=22% Similarity=0.127 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCC-CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLR-DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~-~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
++...+++..++++.+........ +.+|+|+|+|.|.-++.+|-.+ |+.+|+-+|-..+-+...++-.+..+++| ++
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~ 120 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VE 120 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eE
Confidence 455667777777776521111112 5799999999999999999765 88999999999999999999999999976 99
Q ss_pred EEEcccccccccCCCC-eeEEEE
Q 020573 251 IRQGSWFGKLKDVEGK-LSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~-fDlIVs 272 (324)
++++...+.-.. .+ ||+|++
T Consensus 121 i~~~RaE~~~~~--~~~~D~vts 141 (215)
T COG0357 121 IVHGRAEEFGQE--KKQYDVVTS 141 (215)
T ss_pred EehhhHhhcccc--cccCcEEEe
Confidence 999998774332 23 999999
No 204
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.35 E-value=2.5e-06 Score=79.14 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+.+.+ ....+..|+|+|.|.|.++..+++.. .+|+++|+++..++..++... ...+++++.+|+.
T Consensus 17 ~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l 86 (262)
T PF00398_consen 17 NIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TT
T ss_pred HHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchh
Confidence 4566666655 22356799999999999999999973 799999999999998887654 3457999999998
Q ss_pred cccccC--CCCeeEEEEcCCCCC
Q 020573 258 GKLKDV--EGKLSGVVSNPPYIP 278 (324)
Q Consensus 258 ~~l~~~--~~~fDlIVsNPPYi~ 278 (324)
+..... ......||+|.||.-
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETGTG
T ss_pred ccccHHhhcCCceEEEEEecccc
Confidence 743221 246779999999953
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=7.1e-06 Score=75.52 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlI 270 (324)
+..++.+|++-|||||.++.++++..+|.++++..|....-.+.|++..+.+|+.+++++..-|.-..-... ...+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 445688999999999999999999999999999999999999999999999999999999998876432111 4689999
Q ss_pred EEcCC
Q 020573 271 VSNPP 275 (324)
Q Consensus 271 VsNPP 275 (324)
+.+-|
T Consensus 182 FLDlP 186 (314)
T KOG2915|consen 182 FLDLP 186 (314)
T ss_pred EEcCC
Confidence 99865
No 206
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.31 E-value=7.3e-07 Score=84.22 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCCc-EEEEEcccccccccCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA-------VAAFNAQRYGLQDI-IEIRQGSWFGKLKDVEG 265 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~-------~Ar~N~~~~gl~~r-v~~~~gD~~~~l~~~~~ 265 (324)
.+++.|.|...|||.+.++.|.. ++.|+|.||+-.++. ..+.|.+++|..++ +.++.+|+..+.-....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred CCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 46789999999999999999884 489999999988887 35678888885543 57788888764322246
Q ss_pred CeeEEEEcCCCCCCCCcccch----------hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQ----------VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~----------~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||.|||+|||.-.......- ..-..|-|..... .=.+++-.++.-++++|..||.
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCce
Confidence 899999999997543322110 0111233322111 1145667889999999999984
No 207
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.31 E-value=2.9e-06 Score=81.34 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEcccccc-----c
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---------LQDIIEIRQGSWFGK-----L 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g---------l~~rv~~~~gD~~~~-----l 260 (324)
++.+|||||||-|.-..-.... .-..++|+|++..+++.|++..+... ..=...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999999877666664 34799999999999999999883321 111367888988753 1
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.....+||+|-+- +--|.++. --+-.+.+++.+.++|+|||+
T Consensus 140 ~~~~~~FDvVScQ------------------FalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 140 PPRSRKFDVVSCQ------------------FALHYAFE----SEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp SSTTS-EEEEEEE------------------S-GGGGGS----SHHHHHHHHHHHHHTEEEEEE
T ss_pred cccCCCcceeehH------------------HHHHHhcC----CHHHHHHHHHHHHHhcCCCCE
Confidence 2212589999882 11111111 134567899999999999995
No 208
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.31 E-value=1.6e-05 Score=72.38 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlI 270 (324)
....+++||=+|=+ =.+++++|.. +...+|+.+|+++..++..++.+++.|+. ++.++.|+.++++. +.++||++
T Consensus 41 gdL~gk~il~lGDD-DLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 41 GDLEGKRILFLGDD-DLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp T-STT-EEEEES-T-T-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred CcccCCEEEEEcCC-cHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 34567899988844 3556666654 35689999999999999999999999986 99999999998875 46899999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
++||||-
T Consensus 117 ~TDPPyT 123 (243)
T PF01861_consen 117 FTDPPYT 123 (243)
T ss_dssp EE---SS
T ss_pred EeCCCCC
Confidence 9999996
No 209
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.23 E-value=1.3e-05 Score=71.39 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-------CCCCeeEE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSGV 270 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-------~~~~fDlI 270 (324)
+||++|||||--+..+|+++ |..+..-.|.++......+..+...++++-..-+.-|+.+.... ..+.||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 59999999999999999998 88999999999999888888888877765333334444332111 13589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++- .+.+--| -.....+++.|.++|++||.
T Consensus 107 ~~~--------------N~lHI~p----------~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 107 FCI--------------NMLHISP----------WSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred eeh--------------hHHHhcC----------HHHHHHHHHHHHHhCCCCCE
Confidence 982 2222222 24556899999999999994
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.23 E-value=2.2e-06 Score=74.88 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=59.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+.|||+|||.++...|+.. .+|++++.+|.-.++|.+|+...|..+ ++++.||..+.- . ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~-f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYD-F--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccc-c--cccceeHH
Confidence 579999999999999998863 699999999999999999998888764 999999987632 1 46799988
No 211
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.21 E-value=5.2e-06 Score=84.06 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNP 274 (324)
...+||+|||.|-+.+.+|... |+..++|+|++...+..|.+.+.+.++.| +.++.+|+...... ..+++|.|..|-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4589999999999999999996 99999999999999999999988889865 88988886422111 136799999986
Q ss_pred C--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 P--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 P--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| |-.. +|.-+. + .-..+++..++.|||||.
T Consensus 426 PDPWpKk-----------rh~krR-l--------~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 426 PDPWIKN-----------KQKKKR-I--------FNKERLKILQDKLKDNGN 457 (506)
T ss_pred CCCCCCC-----------CCcccc-c--------cCHHHHHHHHHhcCCCCE
Confidence 4 4221 222111 1 123678888999999994
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=98.21 E-value=3.7e-05 Score=71.38 Aligned_cols=138 Identities=8% Similarity=-0.129 Sum_probs=89.3
Q ss_pred CCCceeEE-ecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLV-GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~-g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+-+.|.|. -+..-+|.-+.++ ++.. ...-|.+...++-.. .-.....+++||=+|.|-|..+..+.+. + .+|+
T Consensus 25 kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~-~~v~ 98 (262)
T PRK00536 25 RSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--D-THVD 98 (262)
T ss_pred CCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--C-CeeE
Confidence 45677643 2444557777777 5543 333344444444332 1112335689999999999999999997 4 3999
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCC
Q 020573 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg 301 (324)
-|||+++.++.+++..-.. ++ +.|++++. ++. ....++||+||.+-.|-
T Consensus 99 mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--~~~~~~fDVIIvDs~~~------------------------ 150 (262)
T PRK00536 99 FVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--DLDIKKYDLIICLQEPD------------------------ 150 (262)
T ss_pred EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--hccCCcCCEEEEcCCCC------------------------
Confidence 9999999999999954321 22 35788876 221 11136899999963211
Q ss_pred CCcHHHHHHHHHHHhcccCCCCC
Q 020573 302 VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+.+.+.+.|+|||+
T Consensus 151 -------~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 151 -------IHKIDGLKRMLKEDGV 166 (262)
T ss_pred -------hHHHHHHHHhcCCCcE
Confidence 1456777888999985
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.5e-06 Score=73.61 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCC---------CCcEEEEEcccccccccC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFNAQRYGL---------QDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~-V~gvDis~~al~~Ar~N~~~~gl---------~~rv~~~~gD~~~~l~~~ 263 (324)
.++.++||+|+|||+++..++...+..+. ++|||.-++.++.+++|+.+.-- ..++.++.||......+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e- 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE- 159 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-
Confidence 35779999999999999999976655444 49999999999999999976531 23588889998775544
Q ss_pred CCCeeEEEE
Q 020573 264 EGKLSGVVS 272 (324)
Q Consensus 264 ~~~fDlIVs 272 (324)
..+||.|.+
T Consensus 160 ~a~YDaIhv 168 (237)
T KOG1661|consen 160 QAPYDAIHV 168 (237)
T ss_pred cCCcceEEE
Confidence 468999988
No 214
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=1.6e-06 Score=78.46 Aligned_cols=135 Identities=13% Similarity=0.208 Sum_probs=86.1
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVA 236 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~--~~V~gvDis~~al~~A 236 (324)
|+.-+.....-|.. +.+++....-++. ...+ ....+||++|||.|.....+.+.. ++ ..|+++|.|+.|+++.
T Consensus 39 wD~fy~~~~~rFfk--dR~wL~~Efpel~-~~~~-~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 39 WDTFYKIHENRFFK--DRNWLLREFPELL-PVDE-KSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhccccccc--hhHHHHHhhHHhh-Cccc-cChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHH
Confidence 34434444444432 3445555544444 2111 223379999999999999999874 66 7999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccc---ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKL---KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l---~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
++|..... .++.....|+..+- +...+.+|+|++= |+ ++.+.+ +-....++
T Consensus 114 k~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I--Fv----LSAi~p------------------ek~~~a~~ 167 (264)
T KOG2361|consen 114 KKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI--FV----LSAIHP------------------EKMQSVIK 167 (264)
T ss_pred Hhccccch--hhhcccceeccchhccCCCCcCccceEEEE--EE----EeccCh------------------HHHHHHHH
Confidence 99876543 45666666655432 1124789988771 11 122222 23346788
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
...++|||||.
T Consensus 168 nl~~llKPGG~ 178 (264)
T KOG2361|consen 168 NLRTLLKPGGS 178 (264)
T ss_pred HHHHHhCCCcE
Confidence 88999999994
No 215
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.19 E-value=1.4e-05 Score=67.30 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEE
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDIIE 250 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~---~p~~~V~gvDis~~al~~Ar~N~~~~g--l~~rv~ 250 (324)
-+.+++.+...............|+|+|||.|+++..++..| .++.+|+|+|.++..++.|++..+..+ ...+++
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS 85 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence 344455544443111122346689999999999999999933 257899999999999999999998877 545677
Q ss_pred EEEcccccccccCCCCeeEEEE
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..++..+... ....+++|.
T Consensus 86 ~~~~~~~~~~~--~~~~~~~vg 105 (141)
T PF13679_consen 86 FIQGDIADESS--SDPPDILVG 105 (141)
T ss_pred hhccchhhhcc--cCCCeEEEE
Confidence 77776644211 235566665
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.19 E-value=3.9e-05 Score=71.55 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--cccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~--~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~--l~~~~~~fDlI 270 (324)
.+.+|+|+.||.|...+-+.... +. ..|.-.|.|+..++..++-++..|+.+-++|.++|+|+. +..+..+.+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46799999999999988888776 44 689999999999999999999999998779999999985 33334466776
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|..==| ..-| --+.++.-+...++.+.|||+
T Consensus 214 iVsGL~--------------ElF~---------Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 214 IVSGLY--------------ELFP---------DNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred EEecch--------------hhCC---------cHHHHHHHHHHHHHHhCCCcE
Confidence 662111 1111 135667788889999999985
No 217
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.17 E-value=3.9e-06 Score=78.87 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCeEEEEcCCccH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH--------------Hc-----------
Q 020573 196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ--------------RY----------- 243 (324)
Q Consensus 196 ~~~VLDLGcGsG~----iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~--------------~~----------- 243 (324)
.-+|+..||+||- +|+.+...++ .+.+|+|+|+|+.+++.|++-+- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999995 4455544321 14689999999999999987630 00
Q ss_pred -----CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 244 -----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 244 -----gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
.+.++|+|.+.|+.+......++||+|+|. .|..|-. -+.-+++++...+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR--------------NvliyF~----------~~~~~~vl~~l~~~ 251 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR--------------NVMIYFD----------KTTQERILRRFVPL 251 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh--------------hHHhcCC----------HHHHHHHHHHHHHH
Confidence 022568899999987322224789999993 2222210 12345789999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|+|||+
T Consensus 252 L~pgG~ 257 (287)
T PRK10611 252 LKPDGL 257 (287)
T ss_pred hCCCcE
Confidence 999995
No 218
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.11 E-value=2.7e-05 Score=69.55 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYG----------------------------- 244 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~g----------------------------- 244 (324)
.+..+.|.|||+|++...+.-..+. -..|+|.|++++++++|++|+....
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999999888765322 2479999999999999999985331
Q ss_pred ------------CCCcEEEEEcccccccc----cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHH
Q 020573 245 ------------LQDIIEIRQGSWFGKLK----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL 308 (324)
Q Consensus 245 ------------l~~rv~~~~gD~~~~l~----~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~ 308 (324)
-.....+.+.|.|++-. ......|+|+.+-||....++.. +.+-+-+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g-----------------~~~~~p~ 193 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG-----------------EGSGGPV 193 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS--------------------HHHH
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC-----------------CCCCCcH
Confidence 01126788889987422 11234799999999986554422 1223456
Q ss_pred HHHHHHHhccc
Q 020573 309 LHLCNGTASML 319 (324)
Q Consensus 309 ~~il~~a~~~L 319 (324)
..+++.....|
T Consensus 194 ~~ml~~l~~vL 204 (246)
T PF11599_consen 194 AQMLNSLAPVL 204 (246)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHHhhC
Confidence 67888888888
No 219
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.10 E-value=2.3e-05 Score=72.95 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCcc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHH------HHH
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFN------AQR 242 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG----~iai~la~~~~----p~~~V~gvDis~~al~~Ar~N------~~~ 242 (324)
+.+.+.+...+...... ..-+|+-.||+|| .+|+.+.+.++ ...+|+|+|+|..+++.|+.- ..+
T Consensus 79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 44555565543221111 4569999999999 57777777763 257999999999999999752 211
Q ss_pred ---------c------C-------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 243 ---------Y------G-------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 243 ---------~------g-------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
+ | +...|.|.+.|+.+... ..+.||+|+| ..|.-|--
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC--------------RNVLIYFd------ 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC--------------RNVLIYFD------ 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE--------------cceEEeeC------
Confidence 0 0 12358888888887543 4578999999 33322211
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-..-+++++.-+..|+|||+
T Consensus 217 ----~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 217 ----EETQERILRRFADSLKPGGL 236 (268)
T ss_pred ----HHHHHHHHHHHHHHhCCCCE
Confidence 11224788888999999995
No 220
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.10 E-value=1.3e-05 Score=66.79 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=52.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
.++|+|||.|.+++.+++.. +.++|+++|.++.+.+.+++|++.+++.+ +.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 38999999999999999875 77799999999999999999999998865 8888877664
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.10 E-value=9.9e-06 Score=76.20 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEcccccc-----cccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-LQD----IIEIRQGSWFGK-----LKDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g-l~~----rv~~~~gD~~~~-----l~~~~~ 265 (324)
+..++|||||-|.-++-.-+. .-..++|+||.+..++.|++..+... ... .+.|+.+|.+.. ++..+.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 457899999999988887765 35789999999999999998876431 111 278999998753 222233
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||+|-|- |--|.++. -.+-.+.++..++++|||||+
T Consensus 196 ~fDivScQ------------------F~~HYaFe----tee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 196 RFDIVSCQ------------------FAFHYAFE----TEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred Ccceeeee------------------eeEeeeec----cHHHHHHHHHHHHhhcCCCcE
Confidence 59988872 22222322 134456789999999999996
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.09 E-value=1.2e-05 Score=71.55 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=68.1
Q ss_pred HHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccH----HHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHH-------
Q 020573 177 ELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVL----GSKGSIIAVDLNPLAAAVAAFNA------- 240 (324)
Q Consensus 177 e~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~----iai~la~~~----~p~~~V~gvDis~~al~~Ar~N~------- 240 (324)
+.+.+.++. .+ ........-+|+..||+||- +++.+.... +-..+|+|+|+|+.+++.|++-+
T Consensus 13 ~~l~~~vlp~~~-~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 13 EALRDEVLPPLL-ARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHhhc-cccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 456666663 33 22222245699999999995 444444421 11469999999999999997621
Q ss_pred -------HHc-----C--------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhc-cccccccc
Q 020573 241 -------QRY-----G--------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-HEPRLALD 299 (324)
Q Consensus 241 -------~~~-----g--------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~-~eP~~aL~ 299 (324)
+++ + +.++|.|.+.|+.+. ....++||+|+|. .|.- +.
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CR--------------NVlIYF~------ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCR--------------NVLIYFD------ 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------EEEEEE---------------SSGGGS-------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-CcccCCccEEEec--------------CEEEEeC------
Confidence 111 0 124699999999882 2235799999993 2222 21
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 300 GGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 300 gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+.-.++++..++.|+|||+
T Consensus 151 -----~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 151 -----PETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEE
T ss_pred -----HHHHHHHHHHHHHHcCCCCE
Confidence 23345789999999999995
No 223
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.08 E-value=4.5e-05 Score=65.64 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|.+..+.+.+...+ +...+.-||++|.|+|.++-++.++--+...++++|.|++.+....+. -+.+++++
T Consensus 31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~------~p~~~ii~ 100 (194)
T COG3963 31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPGVNIIN 100 (194)
T ss_pred CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh------CCCccccc
Confidence 34556777777665 334566899999999999999988755678899999999998766543 23478999
Q ss_pred ccccccc----ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 254 GSWFGKL----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 254 gD~~~~l----~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
||.++.- +.....||.|||--|...- +. ..--++++.+...|..||
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~------P~------------------~~~iaile~~~~rl~~gg 150 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNF------PM------------------HRRIAILESLLYRLPAGG 150 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccC------cH------------------HHHHHHHHHHHHhcCCCC
Confidence 9998742 1234579999998886522 11 112268888888898887
No 224
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.06 E-value=6.6e-06 Score=70.71 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=53.4
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCC
Q 020573 224 IAVDLNPLAAAVAAFNAQRYG--LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (324)
Q Consensus 224 ~gvDis~~al~~Ar~N~~~~g--l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg 301 (324)
+|+|+|++|++.|+++.+..+ ..++++++++|..+ ++...++||+|+++ | +.+|-+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~--~------------~l~~~~------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMG--Y------------GLRNVV------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEec--c------------hhhcCC-------
Confidence 489999999999988765332 23469999999876 44445689999984 1 112211
Q ss_pred CCcHHHHHHHHHHHhcccCCCCC
Q 020573 302 VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
....+++++.++|||||.
T Consensus 59 -----d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 59 -----DRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred -----CHHHHHHHHHHHcCcCeE
Confidence 223688999999999994
No 225
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.04 E-value=3.1e-05 Score=78.42 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH
Q 020573 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 165 v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
-...++.|+...+++++.+... ..+...+.|++||||.+.+...+... ....++|.++...+...|+.|+.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~------~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGK------KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccC------CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 3445677887777766543321 11345899999999999987665431 12469999999999999999998
Q ss_pred HcCCCC-cEEEEEccccccccc-CCCCeeEEEEcCCCCC
Q 020573 242 RYGLQD-IIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 242 ~~gl~~-rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~ 278 (324)
.++... ......+|-+..... ...+||.|++||||..
T Consensus 267 l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 267 LHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred HcCCCccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 887642 244445555442211 1247999999999975
No 226
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.03 E-value=1.6e-05 Score=66.85 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCC-CeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEG-KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 222 ~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~-~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
+|+|.||.++|++.+++.++..++.+++++++.+-......... ++|+++.|--|.|.+|..-...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~------------- 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK------------- 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB---------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-------------
Confidence 69999999999999999999999988999999887664443334 8999999999999887542221
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+-.-..++.+.+.|++||+
T Consensus 68 ----~~TTl~Al~~al~lL~~gG~ 87 (140)
T PF06962_consen 68 ----PETTLKALEAALELLKPGGI 87 (140)
T ss_dssp ----HHHHHHHHHHHHHHEEEEEE
T ss_pred ----cHHHHHHHHHHHHhhccCCE
Confidence 11222567888899999984
No 227
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=1.8e-05 Score=72.00 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
..+.++||+|||+|.++..+++. ...+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999986 34789999999987765
No 228
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.00 E-value=3.9e-05 Score=70.52 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-cccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ-GSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~-gD~~~~l~~~~~~fDlIVsN 273 (324)
...++||||+|.|.++..++..| .+|+++|+|+.|.. .+++.|. +++. .||.+ ...+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~----rL~~kg~----~vl~~~~w~~----~~~~fDvIsc- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRW----RLSKKGF----TVLDIDDWQQ----TDFKFDVISC- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHH----HHHhCCC----eEEehhhhhc----cCCceEEEee-
Confidence 45689999999999999999987 57999999998854 3444554 3332 23332 1358999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.|+. .+.|. .+++++.+.|+|+|+
T Consensus 158 --------LNvLDR---c~~P~--------------~LL~~i~~~l~p~G~ 183 (265)
T PF05219_consen 158 --------LNVLDR---CDRPL--------------TLLRDIRRALKPNGR 183 (265)
T ss_pred --------hhhhhc---cCCHH--------------HHHHHHHHHhCCCCE
Confidence 344442 34443 588888999999995
No 229
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=6.1e-05 Score=67.56 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+++|+||--|++.+.+.+. .+...+++.|+++..++.|.+|+.++++.++++...+|-+..+.. +..+|+||.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE
Confidence 346999999999999999998 478899999999999999999999999999999999999887764 347888776
No 230
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.99 E-value=6.2e-05 Score=73.14 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=91.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-ccCCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-~~~~~~fDlI 270 (324)
...++.+|||+|+..|.-+..+|......+.|+|.|.+..-+...+.|+.++|+.+ ..+...|..+.- ....++||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCccccee
Confidence 34467899999999999999999887677899999999999999999999999876 777777765432 1223489999
Q ss_pred EEcCCCCCCCCcccch--------hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQ--------VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~--------~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+-|+..++.+..-+ .++.+| -..-++++..|.+++++||+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~------------~~LQr~LllsAi~lv~~GGv 366 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRY------------AHLQRELLLSAIDLVKAGGV 366 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHh------------HHHHHHHHHHHHhhccCCcE
Confidence 9999997654432211 122222 12347899999999999996
No 231
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.99 E-value=2.5e-06 Score=67.80 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=41.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC-CCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~--~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~-~~fDlIVsNPPY 276 (324)
||+||..|..++.+++.+.++. +++++|..+. .+.+++++++.++.+++++++++..+.++... +++|+|+.+=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence 6899999999999998775544 7999999986 55566667667787889999999977655443 6899999841
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|. -.....-++.+..+|+|||+
T Consensus 78 --------------~H~-----------~~~~~~dl~~~~~~l~~ggv 100 (106)
T PF13578_consen 78 --------------DHS-----------YEAVLRDLENALPRLAPGGV 100 (106)
T ss_dssp ----------------------------HHHHHHHHHHHGGGEEEEEE
T ss_pred --------------CCC-----------HHHHHHHHHHHHHHcCCCeE
Confidence 111 12334567888899999984
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=1.7e-05 Score=69.86 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+...+++|||+|+|+|..+++.++. ....|++.|+.+......+.|++.||+. +.+...|... . ...||+|+
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~--~~~~Dl~L 147 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S--PPAFDLLL 147 (218)
T ss_pred cccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C--CcceeEEE
Confidence 4457889999999999999999997 4578999999999999999999999974 8888888754 1 35799877
Q ss_pred E
Q 020573 272 S 272 (324)
Q Consensus 272 s 272 (324)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 6
No 233
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.92 E-value=4.3e-05 Score=72.37 Aligned_cols=92 Identities=21% Similarity=0.347 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|.+.+++.+ ...+++.++|.-+|.|.-+..+++.+ ++++|+|+|.++.|++.|+++++.+ .++++++++++.
T Consensus 7 Vll~Evl~~L----~~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGL----NIKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhc----CcCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence 4667777766 23356799999999999999999987 4599999999999999999998765 468999999987
Q ss_pred cccccC----CCCeeEEEEcCCC
Q 020573 258 GKLKDV----EGKLSGVVSNPPY 276 (324)
Q Consensus 258 ~~l~~~----~~~fDlIVsNPPY 276 (324)
+....+ ..++|.|+.|--.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccC
Confidence 632211 2469999998654
No 234
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.89 E-value=2.3e-05 Score=76.48 Aligned_cols=81 Identities=22% Similarity=0.190 Sum_probs=62.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+.++||.-+|||.=++..++++....+|++-|+|++|++..++|++.|++.+ ++++.+.|.-..+......||+|=.+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 3589999999999999999996455799999999999999999999999988 79999999876553234789999887
Q ss_pred CCC
Q 020573 275 PYI 277 (324)
Q Consensus 275 PYi 277 (324)
||.
T Consensus 129 PfG 131 (377)
T PF02005_consen 129 PFG 131 (377)
T ss_dssp -SS
T ss_pred CCC
Confidence 454
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.85 E-value=0.00014 Score=69.54 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=100.4
Q ss_pred CCceeEEecccccCeeeeeeCCccc-ccch---HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE
Q 020573 147 KPFQYLVGCEHWRDLVLSVEEGVFI-PRPE---TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (324)
Q Consensus 147 ~pl~yi~g~~~f~~l~~~v~~~vli-Prp~---te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~ 222 (324)
.|.|.|+=..+=.++.++.+.+.=+ -|.+ +|.++--.++.+ ....++|-+|-|.|.-+..+.+. +.-.+
T Consensus 243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLAlRellky-P~~~q 315 (508)
T COG4262 243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLALRELLKY-PQVEQ 315 (508)
T ss_pred CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccc------cccceEEEEcCCchHHHHHHHhC-CCcce
Confidence 4666665444444677787777443 3433 233333222222 22458999999999999999885 33679
Q ss_pred EEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccc
Q 020573 223 IIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~-----gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~ 296 (324)
|+-||++|++++.+++|.... .+ +.|++++..|.++.+.....+||.||.+-|=-.+..+..+..
T Consensus 316 I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS--------- 386 (508)
T COG4262 316 ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYS--------- 386 (508)
T ss_pred EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhh---------
Confidence 999999999999999775322 22 358999999999988776679999999866433332222211
Q ss_pred cccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 297 ALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 297 aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|..-+.++|+++|.
T Consensus 387 ------------~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 387 ------------VEFYRLLSRHLAETGL 402 (508)
T ss_pred ------------HHHHHHHHHhcCcCce
Confidence 2455667889999884
No 236
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.82 E-value=0.00016 Score=69.09 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCCC-c
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRYGLQD-I 248 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~~~gl~~-r 248 (324)
|-|.+++-+...+.. ... ..+..++|+|||+|.-...|.+.+. .....+++|+|.++++.+..++.....+. .
T Consensus 57 r~E~~iL~~~~~~Ia-~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 57 NDEIEILKKHSSDIA-ASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred HHHHHHHHHHHHHHH-Hhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 566777776666655 221 2345899999999998777666552 23679999999999999999998333332 2
Q ss_pred EEEEEcccccccc
Q 020573 249 IEIRQGSWFGKLK 261 (324)
Q Consensus 249 v~~~~gD~~~~l~ 261 (324)
+.-+.||+.+.+.
T Consensus 134 v~~l~gdy~~~l~ 146 (319)
T TIGR03439 134 CAGLLGTYDDGLA 146 (319)
T ss_pred EEEEEecHHHHHh
Confidence 4448999877643
No 237
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.79 E-value=6.9e-05 Score=67.19 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=52.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEEEccccccc--cc
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-------YGL-QDIIEIRQGSWFGKL--KD 262 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-------~gl-~~rv~~~~gD~~~~l--~~ 262 (324)
..++...+|||||.|...+.+|... +-.+++|||+.+...+.|+.+.+. .|. ..++++.++|+.+.. ..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3456799999999999999888876 445699999999999988876643 233 346899999988642 11
Q ss_pred CCCCeeEEEEc
Q 020573 263 VEGKLSGVVSN 273 (324)
Q Consensus 263 ~~~~fDlIVsN 273 (324)
.-...|+|++|
T Consensus 119 ~~s~AdvVf~N 129 (205)
T PF08123_consen 119 IWSDADVVFVN 129 (205)
T ss_dssp HGHC-SEEEE-
T ss_pred hhcCCCEEEEe
Confidence 11357999997
No 238
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=2.7e-05 Score=67.92 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-----cc----CCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----KD----VEGK 266 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-----~~----~~~~ 266 (324)
+.++||+||++|.++..+.++.++.++|+|+|+.+. ... ..+.++++|..+.. .. ..++
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 479999999999999999997545789999999876 122 24777788876531 11 1258
Q ss_pred eeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 267 LSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 267 fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+|+|+++- |...... ..+.. .-++.....+.-|..+|++||
T Consensus 92 ~dlv~~D~~~~~~g~~---------~~d~~-------~~~~l~~~~l~~a~~~L~~gG 133 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR---------NIDEF-------ISIRLILSQLLLALELLKPGG 133 (181)
T ss_dssp ESEEEE-------SSH---------HSSHH-------HHHHHHHHHHHHHHHHHCTTE
T ss_pred cceeccccccCCCCch---------hhHHH-------HHHHHHHHHHHHHHhhhcCCC
Confidence 99999974 2221110 00000 014555666778888999998
No 239
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00012 Score=70.25 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
..+|+|.-+|||.=++..|.+. +..+|+.-|+||+|++.+++|++.|...+ ...++.|....+......||+|=.+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCC
Confidence 5689999999999999999997 44599999999999999999999995544 66666888766655457899998873
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.73 E-value=0.0003 Score=65.73 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~-~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+|+=+|+|. -..++.+++..+++..|+++|++++|++.|++-++ ..|+..++.|+.+|..+....+ ..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-KEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-ccCCEEEE
Confidence 45999999994 56667777765567899999999999999999887 6688889999999987643332 58998887
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00061 Score=61.03 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsN 273 (324)
++++||.+|-|-|.+...+-.. .| .+=+-+|.+++.++..+++.=.. ..+|.++.|-|.+.++.+ ++.||.|.-+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence 5789999999999999988775 35 45567899999998888775322 346999999998876553 4679999974
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|-|. .+.++++.+.+.++|||+|+
T Consensus 177 -----------------Ty~e~---------yEdl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 177 -----------------TYSEL---------YEDLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred -----------------chhhH---------HHHHHHHHHHHhhhcCCCce
Confidence 12111 35677889999999999995
No 242
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00068 Score=60.53 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cC-CCCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV-EGKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~-~~~f 267 (324)
++.+|+|||+-.|..+..+++..+++.+|+|+|+.|-.. . ..|.++++|+++.-. .+ ...+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 467999999999999999999987777899999987321 2 249999999986421 11 2357
Q ss_pred eEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|+|++ |=+ ..... ..++. -+......++.|..+|++||.
T Consensus 113 DvV~sD~ap~~--~g~~~------~Dh~r--------~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 113 DVVLSDMAPNT--SGNRS------VDHAR--------SMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred ceEEecCCCCc--CCCcc------ccHHH--------HHHHHHHHHHHHHHeeCCCCe
Confidence 9999864 211 00000 01111 144556778888999999983
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.44 E-value=0.0003 Score=62.84 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=51.6
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 180 ve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
++.+.+++ . .......|.|+|||-+.++..+.. ..+|+..|+... . -.+...|+..
T Consensus 60 vd~iI~~l-~--~~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------n--~~Vtacdia~- 115 (219)
T PF05148_consen 60 VDVIIEWL-K--KRPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------N--PRVTACDIAN- 115 (219)
T ss_dssp HHHHHHHH-C--TS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------S--TTEEES-TTS-
T ss_pred HHHHHHHH-H--hcCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------C--CCEEEecCcc-
Confidence 34445555 1 112346899999999999965432 357999999631 1 2356677744
Q ss_pred cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 260 l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++-..+.+|++|+.-- .|-. .+..++.+|.|.||+||.
T Consensus 116 vPL~~~svDv~VfcLS--------LMGT-------------------n~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLS--------LMGT-------------------NWPDFIREANRVLKPGGI 153 (219)
T ss_dssp -S--TT-EEEEEEES-----------SS--------------------HHHHHHHHHHHEEEEEE
T ss_pred CcCCCCceeEEEEEhh--------hhCC-------------------CcHHHHHHHHheeccCcE
Confidence 3333579999998521 1111 244689999999999994
No 244
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.44 E-value=0.00082 Score=62.90 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
....+.+|||+|||.|.-..++...++.-.+++++|.|+.|+++++.-++..
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4456789999999999988888777754568999999999999999876544
No 245
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.43 E-value=0.0018 Score=60.45 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------C-
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------------------------L- 245 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g----------------------------l- 245 (324)
.+.+||-.|||.|.++..+|.. +..+.|.|.|--|+-..+-.+.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4569999999999999999996 4799999999988766554332100 0
Q ss_pred ----------CCcEEEEEcccccccccC--CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 246 ----------QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 246 ----------~~rv~~~~gD~~~~l~~~--~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
..++....||+.+..... .++||+|++. =||+ -...+-..++
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFID-------------------------TA~Ni~~Yi~ 186 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFID-------------------------TAENIIEYIE 186 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEee-------------------------chHHHHHHHH
Confidence 124666777777654332 3688888885 1121 1233446788
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
.+.++|||||+
T Consensus 187 tI~~lLkpgG~ 197 (270)
T PF07942_consen 187 TIEHLLKPGGY 197 (270)
T ss_pred HHHHHhccCCE
Confidence 88999999994
No 246
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.41 E-value=0.00031 Score=65.69 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=56.4
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPY 276 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPY 276 (324)
+++|++||.|.+...+.+. + -..|+++|+++.|++..+.|... .++.+|..+..... .+.+|+|+..||+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999999988775 2 35689999999999999988631 14566666533221 3579999999999
Q ss_pred CCCC
Q 020573 277 IPSD 280 (324)
Q Consensus 277 i~~~ 280 (324)
-+.+
T Consensus 73 q~fS 76 (275)
T cd00315 73 QPFS 76 (275)
T ss_pred hhhh
Confidence 7544
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.40 E-value=0.0018 Score=58.52 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
..-|...++.-+ ......++.+||-||..+|.....++...++++.|+|||.|+......-.-+++- .||--+.+|
T Consensus 55 RSKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~D 130 (229)
T PF01269_consen 55 RSKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILED 130 (229)
T ss_dssp T-HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-
T ss_pred hhHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeecc
Confidence 344555554433 2223446779999999999999999999988999999999997655444333332 358888999
Q ss_pred cccccc--cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 256 WFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 256 ~~~~l~--~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...+.. .+-+.+|+|+++= ..|.. .+-++.++..+||+||.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DV-----------------aQp~Q-----------a~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDV-----------------AQPDQ-----------ARIAALNARHFLKPGGH 173 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE------------------SSTTH-----------HHHHHHHHHHHEEEEEE
T ss_pred CCChHHhhcccccccEEEecC-----------------CChHH-----------HHHHHHHHHhhccCCcE
Confidence 887643 2346899999951 12222 12466788889999883
No 248
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.33 E-value=0.00018 Score=64.69 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+.||.|+|.|.++-.+...+ -.+|..||-++..++.|++.+...+ ....++++.-+.+..+. .++||+|.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWIQ- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEEE-
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEeh-
Confidence 34689999999999998764432 2699999999999999997754311 12256666665554332 4699999993
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
=+..|-.. +.+..|++.+...|+|||+
T Consensus 130 -------------W~lghLTD----------~dlv~fL~RCk~~L~~~G~ 156 (218)
T PF05891_consen 130 -------------WCLGHLTD----------EDLVAFLKRCKQALKPNGV 156 (218)
T ss_dssp -------------S-GGGS-H----------HHHHHHHHHHHHHEEEEEE
T ss_pred -------------HhhccCCH----------HHHHHHHHHHHHhCcCCcE
Confidence 12233332 4455899999999999985
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.23 E-value=0.0051 Score=48.56 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=47.3
Q ss_pred EEEEcCCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCC-CCeeEEEE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVE-GKLSGVVS 272 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~-~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~-~~fDlIVs 272 (324)
++|+|||+|... .++... .. ..++|+|.++.++..++......+.. .+.+..+|.... +.... ..||++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 444432 22 48999999999999866554432211 167888887652 33222 37999844
No 250
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.20 E-value=0.0014 Score=60.87 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlI 270 (324)
.+..++.|+-+| -.-..+++++.. +...+|..|||++..+....+-++..|+.| ++.+.-|+.++++. +..+||+.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCee
Confidence 445677899999 666666766664 344689999999999999999999999865 99999999998864 45799999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
+.+|||.
T Consensus 226 iTDPpeT 232 (354)
T COG1568 226 ITDPPET 232 (354)
T ss_pred ecCchhh
Confidence 9999985
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0022 Score=60.22 Aligned_cols=91 Identities=22% Similarity=0.412 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+.+.+ ...+++..+|.--|-|..+..+...+++.++++|+|.++.|++.|++.+..++ +|+.++++++.
T Consensus 10 VLl~E~i~~L----~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 10 VLLNEVVELL----APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred hHHHHHHHhc----ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 3555556555 33456899999999999999999998667889999999999999999988765 68999999876
Q ss_pred cccccC----CCCeeEEEEcC
Q 020573 258 GKLKDV----EGKLSGVVSNP 274 (324)
Q Consensus 258 ~~l~~~----~~~fDlIVsNP 274 (324)
+....+ .+++|.|+.+-
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHhcCCCceeEEEEec
Confidence 532211 25788887753
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.10 E-value=0.0005 Score=65.21 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+++.+ ...+++.++|.--|.|..+.++.+.+ ++++|+|+|.+++|++.|+++++.. .+++.++++++-
T Consensus 7 Vll~Evl~~L----~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 7 VLLKEVLEAL----NPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp TTHHHHHHHH----T--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred ccHHHHHHhh----CcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence 3566666666 23456799999999999999999987 5699999999999999999887644 578999999986
Q ss_pred cccc---c--CCCCeeEEEEcCCC
Q 020573 258 GKLK---D--VEGKLSGVVSNPPY 276 (324)
Q Consensus 258 ~~l~---~--~~~~fDlIVsNPPY 276 (324)
+... . ...++|.|+.+.-+
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHccCCCccCEEEEcccc
Confidence 5321 1 13589999997554
No 253
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.08 E-value=0.0016 Score=62.43 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.++||+||++|.++..+.++ +.+|+|||..+-+ .++.. .++|..+++|-+...+. .+.+|++||+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence 46789999999999999999986 3699999966422 11221 35699999999886553 4689999996
No 254
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.06 E-value=0.00039 Score=55.68 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+||+||.||||+........... .....+.|..|++.+.++| +|
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~------------~~~~~dlY~~Fie~~~~ll--~G 45 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK------------KKKKSDLYILFIEKSLNLL--NG 45 (106)
T ss_pred CcCEEEECCCChhhccccchhhc------------ccccCcHHHHHHHHHHHHh--CC
Confidence 69999999999976643322111 1115788999999999988 66
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00022 Score=61.08 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIE 250 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~--~rv~ 250 (324)
|..|.+.-.++... ....+.+|+++|.| +|.-++.+|... +...|+-.|-++++++..++....|... .++.
T Consensus 12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201|consen 12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence 45566665555422 23456789999999 666777777765 7889999999999999888877665222 2354
Q ss_pred EEEcccccccccC-CCCeeEEEE
Q 020573 251 IRQGSWFGKLKDV-EGKLSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~-~~~fDlIVs 272 (324)
.+..++....... ...||+|++
T Consensus 87 vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 87 VLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred hhHHHHhhhHHHHhhCcccEEEe
Confidence 4555544332222 248999998
No 256
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.94 E-value=0.0029 Score=56.13 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
|.+-...|++.+.... . .++..|||.+||||..++++.+. +.+.+|+|++++.+++|++
T Consensus 173 ~~~kP~~l~~~lI~~~-t----~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS-T----NPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh-h----ccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 4444556777777655 2 24679999999999999988774 4789999999999999975
No 257
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.91 E-value=0.0013 Score=63.93 Aligned_cols=101 Identities=24% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+++|+|||.|.....++.. ....++|+|.++.-+..+..-....++.++-.++.+|+.+... .+..||.+-++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v~~l- 185 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGVRFL- 185 (364)
T ss_pred ccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcEEEE-
Confidence 3447999999999999999885 5689999999998888888877777787777777777766432 25789988883
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|.|... ..++++.+.+||||+
T Consensus 186 -------------d~~~~~~~~~------------~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 186 -------------EVVCHAPDLE------------KVYAEIYRVLKPGGL 210 (364)
T ss_pred -------------eecccCCcHH------------HHHHHHhcccCCCce
Confidence 4456655432 456777888999995
No 258
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.00055 Score=67.87 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIV 271 (324)
.+-+|||.-++||.-++..|++++.-.+|++-|.++.+++..++|++.++..+.++..++|+....-. ....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 35689999999999999999998555689999999999999999999999999899999998643211 236899998
Q ss_pred EcCCCCC
Q 020573 272 SNPPYIP 278 (324)
Q Consensus 272 sNPPYi~ 278 (324)
.+ ||..
T Consensus 189 LD-PyGs 194 (525)
T KOG1253|consen 189 LD-PYGS 194 (525)
T ss_pred cC-CCCC
Confidence 87 5653
No 259
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.86 E-value=0.0017 Score=58.73 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=52.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
..++|+|||-|++...+-.+ .-.+++-+|.|-.|++.++.. +..++. +....+|-. .+...++++|+|++.-
T Consensus 74 p~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE-~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEE-FLDFKENSVDLIISSL 145 (325)
T ss_pred cceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchh-cccccccchhhhhhhh
Confidence 47999999999999988776 246899999999999988753 223332 455566632 2443457999999853
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.0033 Score=53.22 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
-++.++.++ ...+.++.+|+|+|.|.+-++.++.. -..-+|+|+++-.+..++-.+-+.|...+..|..-|.++
T Consensus 60 Qv~nVLSll----~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 60 QVENVLSLL----RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHc----cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 345556666 22345789999999999999999862 357899999999999999999999999899999999987
Q ss_pred c
Q 020573 259 K 259 (324)
Q Consensus 259 ~ 259 (324)
.
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 261
>PRK11524 putative methyltransferase; Provisional
Probab=96.79 E-value=0.0049 Score=57.86 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
.+.|++.+.... . .+++.|||.++|||..++++.+. +.+.+|+|++++.+++|++.++.
T Consensus 194 P~~L~erlI~~~-S----~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-S----NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-C----CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 355666666554 2 35779999999999999987774 47899999999999999998753
No 262
>PRK13699 putative methylase; Provisional
Probab=96.78 E-value=0.0048 Score=56.17 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
|.+-...|++.++... . .+++.|||.+||||..+++..+. +.+.+|+|++++..+.|.+.++..
T Consensus 145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3333345556555443 1 24679999999999999988774 468999999999999999988764
No 263
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.0054 Score=53.95 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccccc-------CCCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKD-------VEGK 266 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~-------~~~~ 266 (324)
++.+|||+||..|..+....+..+|++.|.|||+-.- ..+. .+.++++ |+.++... ...+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPE-GATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCC-CcccccccccCCHHHHHHHHHhCCCCc
Confidence 4679999999999999999998889999999998531 1122 3666666 66554210 2358
Q ss_pred eeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+|+|+|+--=..++. ..+.|+- -+++....+..|...++|+|
T Consensus 137 VdvVlSDMapnaTGv------r~~Dh~~---------~i~LC~s~l~~al~~~~p~g 178 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGV------RIRDHYR---------SIELCDSALLFALTLLIPNG 178 (232)
T ss_pred ccEEEeccCCCCcCc------chhhHHH---------HHHHHHHHHHHhhhhcCCCc
Confidence 999999621111110 1112211 14555566677888888888
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.71 E-value=0.007 Score=55.62 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+|+|+|||-==+++..... .++..++|+||+..+++....-+...+.. .++...|...... ....|+.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--TSEESEEEE
T ss_pred CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--CCCcchhhH
Confidence 569999999999999987765 37789999999999999999999998865 6677778776533 246777665
No 265
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0039 Score=61.19 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=52.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
..+||+|||||.++...+++ + .-.|+|+|.-.-|.+.|++-..++|.+++|+++.-.-.+
T Consensus 68 v~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 46999999999999999987 3 457999999999999999999999999999988755433
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.52 E-value=0.0072 Score=53.83 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccccccccc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKLKD 262 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g------l~~rv~~~~gD~~~~l~~ 262 (324)
...+.|||||-|.+.+.++-.+ |+.-|.|+||--...+.-++.++.++ .-.++.+...+.+..+++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 4579999999999999999997 89999999999998888888887654 223477888877766554
No 267
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.51 E-value=0.011 Score=53.95 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=50.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC-----CCcEEEEEcccccccccCCCCee
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GL-----QDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~---gl-----~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
.+|||.-+|-|.-++.+|. + +++|+++|.||....+.+.-+++. .- ..|++++++|..+.+.....+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-L--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-H--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHc-c--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 3899999999999999986 4 478999999998776666544332 11 14799999999987764457999
Q ss_pred EEEEcCCCCC
Q 020573 269 GVVSNPPYIP 278 (324)
Q Consensus 269 lIVsNPPYi~ 278 (324)
+|..+|=|-.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999998854
No 268
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0011 Score=62.12 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCeEEEEcCCccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai-~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..|+||..|.|++++ .+... ....|+|+|.+|.+++..++|++.|++.++..++.||-...- +....|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheee
Confidence 4689999999999999 55553 567999999999999999999999999888888888865432 2345665544
No 269
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.0063 Score=61.01 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccHHHHHHH---HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIA---RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la---~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
...|+-+|.|-|-+.-+.. +....+.++++||.+|.|+-..+. .+.....++|+++.+|+.+.-+. ..+.|++||
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 4578999999998765443 333356789999999999876654 66666778999999999875432 368899998
No 270
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.31 E-value=0.013 Score=54.10 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
...|.|+|||-+-|+. .. .-+|+..|+-. + +-+++..|+.+ ++-.+++.|++|..--
T Consensus 181 ~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------~--~~~V~~cDm~~-vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------V--NERVIACDMRN-VPLEDESVDVAVFCLS 237 (325)
T ss_pred ceEEEecccchhhhhh---cc---ccceeeeeeec--------------C--CCceeeccccC-CcCccCcccEEEeeHh
Confidence 4589999999999887 22 25799999853 1 24556677766 4434579999988411
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+. ..+..|+.+|.+.|++||.
T Consensus 238 ---------LMg------------------tn~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 238 ---------LMG------------------TNLADFIKEANRILKPGGL 259 (325)
T ss_pred ---------hhc------------------ccHHHHHHHHHHHhccCce
Confidence 111 1244689999999999994
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=96.26 E-value=0.0037 Score=58.69 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=42.6
Q ss_pred cEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+++++|..+.+..+ .++||+||+||||-........ .... . ..+=++.+..++.++.++|||||.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~-------~~~~--~-~~~~~~~l~~~l~~~~rvLK~~G~ 75 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL-------IEAW--K-EDLFIDWLYEWIDECHRVLKKQGT 75 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccc-------cccc--c-HHHHHHHHHHHHHHHHHHhCCCcE
Confidence 3578899998854332 4689999999999642211100 0000 0 111245567899999999999994
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.037 Score=53.43 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--cc------
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG--KL------ 260 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~--~l------ 260 (324)
+..++.+|||+|+..|.-++.+.+.... .+.|++-|.++.-+...++-+.+..-. ++.+...|... ..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence 3446789999999999999888876522 238999999998888877776544322 23333333211 11
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccccc---CCC-CcHHHH-HHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD---GGV-DGLDYL-LHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~---gg~-dGl~~~-~~il~~a~~~LkpgG~ 324 (324)
......||-|+++=|+...+.+ ++.|.+--. ... -||-.+ -.|+..+.++||+||.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~--------rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTL--------RKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred hhhhhhcceeEEecccCCCccc--------ccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 0112479999999999766433 222222111 111 234333 3789999999999994
No 273
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.21 E-value=0.0081 Score=54.03 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
....+++++.+............++||+||=+....+..... -.|+.+|+++. .-.+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~----fdvt~IDLns~----------------~~~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ----------------HPGILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc----eeeEEeecCCC----------------CCCceee
Confidence 345677777665421111122368999999987766665444 36999999851 1456788
Q ss_pred ccccc-cc-cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGK-LK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~-l~-~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||++- ++ ...++||+|++ .-|..|-|.-..- -.++..+.++|+++|.
T Consensus 91 DFm~rplp~~~~e~FdvIs~--------------SLVLNfVP~p~~R---------G~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISL--------------SLVLNFVPDPKQR---------GEMLRRAHKFLKPPGL 139 (219)
T ss_pred ccccCCCCCCcccceeEEEE--------------EEEEeeCCCHHHH---------HHHHHHHHHHhCCCCc
Confidence 88873 33 12569999998 3344555532211 1688999999999984
No 274
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.20 E-value=0.0082 Score=56.42 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=54.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPPY 276 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNPPY 276 (324)
+++||+||.|.+.+.+-+. + -..|.++|+++.|.+.-+.|.. ....+|..+.... +.+.+|+++.-||+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6899999999999999886 2 3579999999999999998864 6777887764221 11159999999999
Q ss_pred CCCCCc
Q 020573 277 IPSDDI 282 (324)
Q Consensus 277 i~~~~~ 282 (324)
-+-+..
T Consensus 72 Q~fS~a 77 (335)
T PF00145_consen 72 QGFSIA 77 (335)
T ss_dssp TTTSTT
T ss_pred ceEecc
Confidence 875543
No 275
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.20 E-value=0.011 Score=56.58 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
...+|+|.|.|.++-.+...+ | +|-+++.+...+..++.+.. .| |+.+.||.|+..+ +-|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEE----
Confidence 579999999999999999976 4 58888888888877777765 44 8889999998744 4568887
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+=+.+| -+=+...+|++++++.|+|||.
T Consensus 243 ----------kWiLhd----------wtDedcvkiLknC~~sL~~~Gk 270 (342)
T KOG3178|consen 243 ----------KWILHD----------WTDEDCVKILKNCKKSLPPGGK 270 (342)
T ss_pred ----------Eeeccc----------CChHHHHHHHHHHHHhCCCCCE
Confidence 222222 2235667899999999999994
No 276
>PHA01634 hypothetical protein
Probab=96.20 E-value=0.027 Score=46.66 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+++|+|+|.+.|.-++.++.. ...+|++++.++...+..++|++.+.+-++.. ..++|-. .-+.||+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW~~----~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEWNG----EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccccc----cCCCcceEEEE
Confidence 5779999999999999999886 46799999999999999999999886655332 2334543 23678887774
No 277
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.10 E-value=0.0081 Score=53.78 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII 249 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~---~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv 249 (324)
-|..-...+.++-.+ ++..|+++|+-.|.-++..|.. ++++++|+|+|++....... ..+.+.+.++|
T Consensus 17 ~P~Dm~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI 87 (206)
T PF04989_consen 17 YPQDMVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRI 87 (206)
T ss_dssp -HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred CHHHHHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCce
Confidence 344444455444433 4679999999999988887753 45678999999964433222 22335566789
Q ss_pred EEEEcccccc
Q 020573 250 EIRQGSWFGK 259 (324)
Q Consensus 250 ~~~~gD~~~~ 259 (324)
++++||..+.
T Consensus 88 ~~i~Gds~d~ 97 (206)
T PF04989_consen 88 TFIQGDSIDP 97 (206)
T ss_dssp EEEES-SSST
T ss_pred EEEECCCCCH
Confidence 9999998753
No 278
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.085 Score=47.11 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|...-|...++.-+ .+.....+.+||=||..+|.....++... +++.|+|||.|+....-.-.-+++- +|+--+.
T Consensus 56 p~RSKLaAaIl~Gl-~~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL 130 (231)
T COG1889 56 PRRSKLAAAILKGL-KNFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKR---PNIIPIL 130 (231)
T ss_pred cchhHHHHHHHcCc-ccCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhC---CCceeee
Confidence 34445566555544 33344567899999999999999999987 5889999999998765544444332 3477788
Q ss_pred cccccccc--cCCCCeeEEEEc
Q 020573 254 GSWFGKLK--DVEGKLSGVVSN 273 (324)
Q Consensus 254 gD~~~~l~--~~~~~fDlIVsN 273 (324)
+|+..+.. .+-+.+|+|+.+
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe
Confidence 88876532 234679999984
No 279
>PRK13699 putative methylase; Provisional
Probab=95.81 E-value=0.0088 Score=54.45 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=42.8
Q ss_pred EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++++||..+.+..+ .+++|+||.+|||-.... .+.-. -..+.+..+.+..++.++.++|||||+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~---------~~~~~--~~~~~~~~ew~~~~l~E~~RVLKpgg~ 67 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFR---------DRQGR--TIAGDKTDEWLQPACNEMYRVLKKDAL 67 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccc---------cCCCc--ccccccHHHHHHHHHHHHHHHcCCCCE
Confidence 467889988765433 479999999999953100 00000 011233456778899999999999984
No 280
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.80 E-value=0.0085 Score=58.66 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r-v~~~~gD~~~~l 260 (324)
.+..|.|++||.|-+++.+++. +++|++-|++++++++.+.|+..+.+... ++.+..|..+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4678999999999999999986 49999999999999999999999988776 999998887665
No 281
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.78 E-value=0.069 Score=46.26 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.5
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHH--HHH---HHHHHHHHcCCCCcEEE-EEccccccccc---CCCCeeEEEE
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPL--AAA---VAAFNAQRYGLQDIIEI-RQGSWFGKLKD---VEGKLSGVVS 272 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~--al~---~Ar~N~~~~gl~~rv~~-~~gD~~~~l~~---~~~~fDlIVs 272 (324)
+|=|.=.++.+|++.++...+++|+-.+.+ ..+ .+..|++.+.-.+ +.+ ..-|..+.-.. ..++||.||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 455666788888888754567777665543 222 2446766552222 333 33344442221 1468999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|-|-+... ...-...+..+ -.+++.|++.|..+|+++|
T Consensus 82 NFPH~G~~-~~~~~~~i~~n------------r~Ll~~Ff~Sa~~~L~~~G 119 (166)
T PF10354_consen 82 NFPHVGGG-SEDGKRNIRLN------------RELLRGFFKSASQLLKPDG 119 (166)
T ss_pred eCCCCCCC-ccchhHHHHHH------------HHHHHHHHHHHHHhcCCCC
Confidence 99987521 11111222222 3677899999999999988
No 282
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.067 Score=48.83 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlI 270 (324)
..++..+||+|+-||.|+-.+.+. ...+|+|+|..-..+..--+| ..|+..++.-=...+. ...+..|+|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 346789999999999999999986 457999999987666543322 3456555442222221 223578999
Q ss_pred EEcCCCCCC
Q 020573 271 VSNPPYIPS 279 (324)
Q Consensus 271 VsNPPYi~~ 279 (324)
+++--||+-
T Consensus 149 v~DvSFISL 157 (245)
T COG1189 149 VIDVSFISL 157 (245)
T ss_pred EEEeehhhH
Confidence 998777753
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.45 E-value=0.025 Score=56.66 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAV---DLNPLAAAVAAFNAQR 242 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~-~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gv---Dis~~al~~Ar~N~~~ 242 (324)
.|..+|.. ...+++.+.+.+ .. .....-..+||+|||+|.++..|..+ +..+..+ |..+..++.|-+
T Consensus 90 ggt~F~~G-a~~Yid~i~~~~-~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale---- 160 (506)
T PF03141_consen 90 GGTMFPHG-ADHYIDQIAEMI-PLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE---- 160 (506)
T ss_pred CCccccCC-HHHHHHHHHHHh-hccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----
Confidence 33444442 334566666655 21 11112236899999999999999875 2333333 333333444332
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
-|+..-+.+ -+ ..-++...+.||+|-|
T Consensus 161 RGvpa~~~~-~~--s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 161 RGVPAMIGV-LG--SQRLPFPSNAFDMVHC 187 (506)
T ss_pred cCcchhhhh-hc--cccccCCccchhhhhc
Confidence 344321111 11 1224444578998887
No 284
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.38 E-value=0.035 Score=52.99 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=53.3
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
|+||+||.|.+.+.+-+. + --.+.++|+++.+++.-+.|.. + .++.+|..+........+|+++.-||+-+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 589999999999999765 2 2356789999999999888842 1 34456765532211246899999999876
Q ss_pred CC
Q 020573 279 SD 280 (324)
Q Consensus 279 ~~ 280 (324)
-+
T Consensus 72 fS 73 (315)
T TIGR00675 72 FS 73 (315)
T ss_pred cc
Confidence 54
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.038 Score=53.02 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=57.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCC-CeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEG-KLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~-~fDlIVsNP 274 (324)
-+++||+||.|.+.+.+... + -.-+.++|+++.+++.-+.|... ..+..+|..+.... ... .+|+|+.-|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 47999999999999988875 2 35799999999999988888542 45556666543322 112 799999999
Q ss_pred CCCCCCC
Q 020573 275 PYIPSDD 281 (324)
Q Consensus 275 PYi~~~~ 281 (324)
|+-+-+.
T Consensus 76 PCQ~FS~ 82 (328)
T COG0270 76 PCQDFSI 82 (328)
T ss_pred CCcchhh
Confidence 9976543
No 286
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.16 E-value=0.026 Score=52.30 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------C---------
Q 020573 193 GLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----------------Q--------- 246 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~ia-i~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl----------------~--------- 246 (324)
..++.++||+|||+-..- +.++..+ .+|+..|..+...+..++-++.-+- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 345678999999985543 3333433 5899999999988877665543221 0
Q ss_pred --CcE-EEEEcccccccc--c---CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 247 --DII-EIRQGSWFGKLK--D---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 247 --~rv-~~~~gD~~~~l~--~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
..| +++..|..+.-+ . ..++||+|++- --+... -.-++.|+..++...++
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~---------fcLE~a-------------~~d~~~y~~al~ni~~l 188 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS---------FCLESA-------------CKDLDEYRRALRNISSL 188 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE---------SSHHHH--------------SSHHHHHHHHHHHHTT
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhh---------HHHHHH-------------cCCHHHHHHHHHHHHHH
Confidence 113 366777766322 1 12359998882 111111 11267899999999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|||||.
T Consensus 189 LkpGG~ 194 (256)
T PF01234_consen 189 LKPGGH 194 (256)
T ss_dssp EEEEEE
T ss_pred cCCCcE
Confidence 999994
No 287
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.14 E-value=0.19 Score=50.67 Aligned_cols=81 Identities=14% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------------- 260 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--------------- 260 (324)
.-+++||+||.|.+.+.+-.. ....|.++|+++.|.+.-+.|.... .....+.+|..+..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhh
Confidence 458999999999999999664 3346899999999999888874211 11333445544321
Q ss_pred -ccCCCCeeEEEEcCCCCCCCC
Q 020573 261 -KDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 261 -~~~~~~fDlIVsNPPYi~~~~ 281 (324)
......+|+++.-||+-+-+.
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hhccCCCCCEEEEcCCCCccch
Confidence 001136899999999876543
No 288
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.10 E-value=0.0042 Score=55.48 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.+.++||+|.|.|-++..++-.+ .+|+|.|+|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 45799999999999999999887 579999999988776543
No 289
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.77 E-value=0.029 Score=52.35 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=65.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+..++|.|||.|-.... .|...++|.|++...+..|++- +......+|+.+. +.....||.+++
T Consensus 46 gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~-p~~~~s~d~~ls--- 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKL-PFREESFDAALS--- 109 (293)
T ss_pred cceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC-------CCceeehhhhhcC-CCCCCccccchh---
Confidence 56899999999976531 2667899999999888877742 2126777887763 333568998877
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
...++++....++. .++++..+.|+|||
T Consensus 110 ---iavihhlsT~~RR~-----------------~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 110 ---IAVIHHLSTRERRE-----------------RALEELLRVLRPGG 137 (293)
T ss_pred ---hhhhhhhhhHHHHH-----------------HHHHHHHHHhcCCC
Confidence 23444555444332 68889999999998
No 290
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.65 E-value=0.11 Score=48.28 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred CeEEEEcCCcc--HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 197 GFWVDLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 197 ~~VLDLGcGsG--~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
...||||||-- ...-.+|+...|+++|+=||++|..+..++.-+..+.- .+..++++|+.++
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 37999999932 23445666667999999999999999999987765431 2489999999875
No 291
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.60 E-value=0.14 Score=48.69 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
...+||-.|||.|.++..+|.. +. .+-|-|.|--|+-...
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHHHHHH
Confidence 3568999999999999999997 34 4556688777765443
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.79 E-value=0.2 Score=45.95 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlI 270 (324)
..++.+||=||+++|..-..++...+|..-|+|||.|+.+=...-..+++. .+|--+.-|+..+.+ .+-+-+|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence 456789999999999999999998899999999999986533332222211 236666677765432 134578999
Q ss_pred EEc
Q 020573 271 VSN 273 (324)
Q Consensus 271 VsN 273 (324)
+++
T Consensus 231 FaD 233 (317)
T KOG1596|consen 231 FAD 233 (317)
T ss_pred ecc
Confidence 985
No 293
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.77 E-value=0.12 Score=50.45 Aligned_cols=95 Identities=16% Similarity=0.300 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QDI 248 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-------gl-~~r 248 (324)
|...+++.... .+....+.+...|+|.|.|.....+|... ....=+|+++....-+.|..|.+.+ |- .+.
T Consensus 175 E~~~~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~ 252 (419)
T KOG3924|consen 175 ETQLEQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK 252 (419)
T ss_pred hhhHHHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 44445555544 33344567789999999999999888864 4567789999988888887776432 33 456
Q ss_pred EEEEEcccccccc--cCCCCeeEEEEc
Q 020573 249 IEIRQGSWFGKLK--DVEGKLSGVVSN 273 (324)
Q Consensus 249 v~~~~gD~~~~l~--~~~~~fDlIVsN 273 (324)
++.+++++..+-. .+....++|++|
T Consensus 253 ~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 253 IETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred eeecccccCCHHHHHHHhhcceEEEEe
Confidence 8999999876421 223468899997
No 294
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.73 E-value=0.093 Score=47.74 Aligned_cols=99 Identities=27% Similarity=0.299 Sum_probs=64.2
Q ss_pred CeEEEEcCCccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------cc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGS----K----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KD 262 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p----~----~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~~ 262 (324)
.+++|||...|..+..+++++.. . .+|++||+.+-+ -++ .|.-+++|....- .+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence 48999999999999999987632 1 239999997532 233 3888999987642 22
Q ss_pred C-CCCeeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 263 V-EGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 263 ~-~~~fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+ .++.|+|||+- |=+. .++.+. |+.. -+++...+.-+..+|||||
T Consensus 111 fggekAdlVvcDGAPDvT--GlHd~D-Ey~Q-------------~qLllaAl~i~t~Vlk~Gg 157 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVT--GLHDLD-EYVQ-------------AQLLLAALNIATCVLKPGG 157 (294)
T ss_pred hCCCCccEEEeCCCCCcc--ccccHH-HHHH-------------HHHHHHHHHHHhheecCCC
Confidence 2 24899999962 2110 111111 1111 2344566788889999998
No 295
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.68 E-value=0.34 Score=44.66 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccccccc--CCCC-e
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----GLQDIIEIRQGSWFGKLKD--VEGK-L 267 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-----gl~~rv~~~~gD~~~~l~~--~~~~-f 267 (324)
..+||++|+|+|.-++.+|... .++|+-.|.. ..+...+.|...+ ++...+.+..-+|.+.+.. .... |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4579999999999999888864 5889999985 4555555554333 3333577777777664431 1234 8
Q ss_pred eEEEEc
Q 020573 268 SGVVSN 273 (324)
Q Consensus 268 DlIVsN 273 (324)
|+|++-
T Consensus 164 Dlilas 169 (248)
T KOG2793|consen 164 DLILAS 169 (248)
T ss_pred cEEEEe
Confidence 988873
No 296
>PTZ00357 methyltransferase; Provisional
Probab=93.66 E-value=0.27 Score=51.27 Aligned_cols=75 Identities=23% Similarity=0.146 Sum_probs=50.8
Q ss_pred eEEEEcCCccHHHHH---HHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCC-------CCcEEEEEccccccccc----
Q 020573 198 FWVDLGTGSGAIAIG---IARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGL-------QDIIEIRQGSWFGKLKD---- 262 (324)
Q Consensus 198 ~VLDLGcGsG~iai~---la~~~~p~~~V~gvDis~~al~~Ar~N~~~-~gl-------~~rv~~~~gD~~~~l~~---- 262 (324)
.|+-+|+|-|-+--. .++..+-+.+|++||.|+.++.+.+.+..+ ... .++|+++.+|+.+.-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999976544 344444467999999997766555555322 122 34699999999774221
Q ss_pred ------CCCCeeEEEE
Q 020573 263 ------VEGKLSGVVS 272 (324)
Q Consensus 263 ------~~~~fDlIVs 272 (324)
..+++|+|||
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 1147999998
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.59 E-value=0.37 Score=46.43 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---ccccccccCCCCee
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG---SWFGKLKDVEGKLS 268 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g---D~~~~l~~~~~~fD 268 (324)
..++++|+=.|+| .|.+++.+|+.. .++|+++|.+++-.+.|++- |. -.++.+ |..+.+ .+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~---~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV---KEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh---HhhCc
Confidence 3456787777776 678999999986 39999999999999988864 32 233332 333322 23599
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
+|+.-
T Consensus 232 ~ii~t 236 (339)
T COG1064 232 AIIDT 236 (339)
T ss_pred EEEEC
Confidence 98873
No 298
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.47 E-value=0.24 Score=48.20 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~~~fDlIVs 272 (324)
.++.+|+|.||-.|.-++.+|......++++|+|.+.+-.+..++-+...|... ++...+|+... .+.--..+-.|+.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~~~~~~~~v~~iL~ 290 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTATPEKFRDVTYILV 290 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCCCCcccccceeEEEe
Confidence 356899999999999999999887668899999999999999999999998865 77789998773 2221245778999
Q ss_pred cCCCCCCC
Q 020573 273 NPPYIPSD 280 (324)
Q Consensus 273 NPPYi~~~ 280 (324)
+|+...+.
T Consensus 291 DpscSgSg 298 (413)
T KOG2360|consen 291 DPSCSGSG 298 (413)
T ss_pred CCCCCCCc
Confidence 99997655
No 299
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.41 Score=46.36 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHHcC
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GS----KGSIIAVDLNPLAAAVAAFNAQRYG 244 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~---~p----~~~V~gvDis~~al~~Ar~N~~~~g 244 (324)
|++..++.+.+ +......+-.++++|.|.|.++.-+.+.. .| ..++.-||.|++..+.-+++++...
T Consensus 60 ella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 60 ELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45555555555 33333345689999999999998877654 22 5689999999999888888877553
No 300
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.05 E-value=0.22 Score=44.30 Aligned_cols=108 Identities=18% Similarity=0.067 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHH--cCCCCcEEEEEcccccccccCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL----AAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~----al~~Ar~N~~~--~gl~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
++.+|+|+--|.|.++..++...++++.|+++--.+. ..+..+.|... .... +++.+-.+..... ..+..|
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--CCCccc
Confidence 5679999999999999999999999999998764433 11223333221 1222 2555555544433 235677
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|-=|+.- +..... -.....+...+.+.|||||+
T Consensus 125 ~~~~~~~yhdm---------------h~k~i~----~~~A~~vna~vf~~LKPGGv 161 (238)
T COG4798 125 LVPTAQNYHDM---------------HNKNIH----PATAAKVNAAVFKALKPGGV 161 (238)
T ss_pred ccccchhhhhh---------------hccccC----cchHHHHHHHHHHhcCCCcE
Confidence 77776555421 111111 11223566778899999995
No 301
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.98 E-value=0.26 Score=46.47 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEEcccccccccC-CCCeeE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQ-DIIEIRQGSWFGKLKDV-EGKLSG 269 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl~-~rv~~~~gD~~~~l~~~-~~~fDl 269 (324)
..+++++-+|-|-|......+++ ..-.+++-+|++...++..++..... |.+ .+|.++-||-+..++.. .++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45679999999999999888887 34568999999999999999887643 332 46999999998876654 679999
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+ +++. ..+.+ -.+.+.+++...+.||+||+
T Consensus 199 ii~d-----ssdp-vgpa~----------------~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 199 IITD-----SSDP-VGPAC----------------ALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred EEEe-----cCCc-cchHH----------------HHHHHHHHHHHHHhhCCCcE
Confidence 9984 1111 11111 12345788888999999985
No 302
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.80 E-value=0.3 Score=44.92 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p-------~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+-+|+|+|.|+|.++.-+.+.+.. ..+++-||.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 368999999999999999987742 24899999999998888887754
No 303
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.02 E-value=2.3 Score=36.72 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
.+.+++.+.+.. ....+|+=+||=|-...+.- ...++.+++-.|++..-- ..+ ++ +|+.=|
T Consensus 12 ~~~l~~~l~~~~------~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA------LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc------CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECC
Confidence 445555555433 13468999999887777665 123667899999996432 122 22 455555
Q ss_pred cccccc---cCCCCeeEEEEcCCCCCC
Q 020573 256 WFGKLK---DVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 256 ~~~~l~---~~~~~fDlIVsNPPYi~~ 279 (324)
..++.. .+.++||+||.+|||...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~~ 99 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLSE 99 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCCH
Confidence 555432 235799999999999643
No 304
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.95 E-value=0.6 Score=49.01 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL------GS-----KGSIIAVDLNP---LAAAVA-----------AFNAQR-----YGL 245 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~------~p-----~~~V~gvDis~---~al~~A-----------r~N~~~-----~gl 245 (324)
.-+|+|+|-|+|...+...+.+ .+ ..+++++|..| +-+..+ ++-.+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999887777655 12 35899999754 222222 222211 122
Q ss_pred ------CC--cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 246 ------QD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 246 ------~~--rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
.+ +++++.||+.+.+..+..++|+++.++ |.|... ++. |. ..++...++
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~n-----p~~--W~---------------~~~~~~l~~ 194 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKN-----PDM--WS---------------PNLFNALAR 194 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccC-----hhh--cc---------------HHHHHHHHH
Confidence 12 355778998887766556799999973 333222 111 21 146777788
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+++|||.
T Consensus 195 ~~~~~~~ 201 (662)
T PRK01747 195 LARPGAT 201 (662)
T ss_pred HhCCCCE
Confidence 8888874
No 305
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.81 E-value=0.26 Score=39.62 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis 229 (324)
+....+|+|||+|.+.--|.++ +-..+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence 3457999999999999888876 3678899874
No 306
>COG4889 Predicted helicase [General function prediction only]
Probab=91.66 E-value=0.35 Score=51.73 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=82.2
Q ss_pred cccccchHHHHHHHHHHHhhh---cCCCCCCCeEEEEcCCccHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVR---DNDGLRDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~---~~~~~~~~~VLDLGcGsG~iai~la~~~~p--------~~~V~gvDis~~al~~Ar 237 (324)
|+.|-.....++..+-..+.. ..-...+.+|||.++|||.+...+.+.+-. ....+|.||---+..+|.
T Consensus 816 VyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAa 895 (1518)
T COG4889 816 VYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAA 895 (1518)
T ss_pred eecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566765545554433333211 111234568999999999988776543210 236788888777778888
Q ss_pred HHHHHc--CCCCcE----EEEEcccccccc------------------cCCCCeeEEEEcCCCCCCCCc-ccchhhhhcc
Q 020573 238 FNAQRY--GLQDII----EIRQGSWFGKLK------------------DVEGKLSGVVSNPPYIPSDDI-SGLQVEVGKH 292 (324)
Q Consensus 238 ~N~~~~--gl~~rv----~~~~gD~~~~l~------------------~~~~~fDlIVsNPPYi~~~~~-~~l~~ev~~~ 292 (324)
-|++.. ++.... .+...|-|+.++ +..-+.-+|+.||||.....- +.....+ .|
T Consensus 896 iNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl-~y 974 (1518)
T COG4889 896 INIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNL-SY 974 (1518)
T ss_pred hhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccccc-cc
Confidence 888642 111100 112222222111 112257899999999754321 1111111 11
Q ss_pred c--------ccccc--c-CCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 293 E--------PRLAL--D-GGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 293 e--------P~~aL--~-gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. -...- . -...-.|-|-+.++-|.+.++..|+
T Consensus 975 pkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GV 1017 (1518)
T COG4889 975 PKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGV 1017 (1518)
T ss_pred chHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCce
Confidence 1 10000 0 0122356677788888899988885
No 307
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.87 E-value=0.79 Score=44.73 Aligned_cols=42 Identities=19% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
-+.++|+|.|-|.++..++-.+ +-.|.|||-|..+.+.|++-
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 4589999999999999999875 68999999998877776654
No 308
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=3.5 Score=38.25 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
-|-+++.+...+.+.. ....+...+|+|+|+-.-+..+...+.+ -.+.+.+|+|...+.-..+-+...-..-.
T Consensus 59 TRtEaaIl~~~a~Eia----~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~ 134 (321)
T COG4301 59 TRTEAAILQARAAEIA----SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE 134 (321)
T ss_pred chhHHHHHHHHHHHHH----HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe
Confidence 3667777777666655 2224668999999999888777766522 26899999999887655444433322223
Q ss_pred EEEEEcccccccccC
Q 020573 249 IEIRQGSWFGKLKDV 263 (324)
Q Consensus 249 v~~~~gD~~~~l~~~ 263 (324)
+.-+.+|+...+..+
T Consensus 135 v~~l~~~~~~~La~~ 149 (321)
T COG4301 135 VNALCGDYELALAEL 149 (321)
T ss_pred EeehhhhHHHHHhcc
Confidence 677788877665543
No 309
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.91 E-value=0.98 Score=37.64 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=34.4
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEcc
Q 020573 201 DLGTGSG--AIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFN--AQRYGLQDIIEIRQGS 255 (324)
Q Consensus 201 DLGcGsG--~iai~la-~~~~p~~~V~gvDis~~al~~Ar~N--~~~~gl~~rv~~~~gD 255 (324)
|+|+..| .....+. +...+..+|+++|-++..++..++| +..+...+.++++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 5555543 2345788999999999999999999 6666443345555543
No 310
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.56 E-value=1.8 Score=43.52 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=68.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+++-+|||.--+...+-+. ....|+.+|+|+.+++.+..--.+. .....+...|..... ...++||+|+-=
T Consensus 51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~-fedESFdiVIdk---- 121 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLV-FEDESFDIVIDK---- 121 (482)
T ss_pred eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhcc-CCCcceeEEEec----
Confidence 8999999999988888775 3568999999999988765432211 123788888876632 235789998872
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++.+ +++..++.- ....-..+.+.++.|++||.
T Consensus 122 --GtlDal------~~de~a~~~----~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 122 --GTLDAL------FEDEDALLN----TAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred --Cccccc------cCCchhhhh----hHHhhHHHhhHHHHhccCCE
Confidence 111111 111111110 02334567888899999984
No 311
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.68 E-value=4 Score=36.85 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCeEEEEcCCcc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-cccccCCCCeeEE
Q 020573 196 DGFWVDLGTGSG----AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF-GKLKDVEGKLSGV 270 (324)
Q Consensus 196 ~~~VLDLGcGsG----~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~-~~l~~~~~~fDlI 270 (324)
.+.+++.+|+-| .++++.|.+- .++++++|--+++.+...++.+...++.+.++|+.|+-. +.+..+ ...|++
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-cCCCEE
Confidence 457899876644 4555555553 678999999999998888988888888877899999853 334443 468888
Q ss_pred EEc
Q 020573 271 VSN 273 (324)
Q Consensus 271 VsN 273 (324)
+.+
T Consensus 120 vVD 122 (218)
T PF07279_consen 120 VVD 122 (218)
T ss_pred EEe
Confidence 874
No 312
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=4.3 Score=35.66 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCCceeEEe--cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHH
Q 020573 133 DELYGLWKQRIEKRKPFQYLVG--CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIA 210 (324)
Q Consensus 133 ~~~~~~~~~r~~~~~pl~yi~g--~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~ia 210 (324)
.+....-.+|+...++..++++ ...|.--+|..+ +...+.+++...+.. ..+.+|.=+.|-|=++-
T Consensus 21 ~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~------~eta~~La~e~v~~s------~e~~rIacvS~Psly~y 88 (217)
T KOG3350|consen 21 NEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYS------DETARKLAAERVEAS------GEGSRIACVSCPSLYVY 88 (217)
T ss_pred HHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcC------HHHHHHHHHHHHhhc------ccCceEEEEeCchHHhh
Confidence 3334444456666666656554 234432122211 122334444443322 12457777777765522
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCCCCC
Q 020573 211 IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 211 i~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~ 280 (324)
.-.-..-.|.-+|+-.+.+.. ...+| -+|+.-|.-.++.. +.+.||+||.+|||....
T Consensus 89 ~k~re~~~~~~~v~lfEfDkR--------Fe~yg----~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e 149 (217)
T KOG3350|consen 89 QKKREIEIPHDQVYLFEFDKR--------FELYG----TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE 149 (217)
T ss_pred hhhhhccCCceeEEEEEehhh--------HHhcc----ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch
Confidence 211111124568888888753 23344 45666666555432 356899999999998654
No 313
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.55 E-value=2.2 Score=43.46 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 194 ~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.++.+|+=+|+| .|..++..|+.+ +++|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 457899999999 678888889986 3589999999999888775
No 314
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.46 E-value=1.2 Score=36.86 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=35.7
Q ss_pred CCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE-c
Q 020573 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS-N 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs-N 273 (324)
..+++++|-|.=. .+..|.+. +..|+++|+++. ++. . .+.++.-|.+++-...-...|+|.| |
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcEEEEeC
Confidence 4499999999654 45555554 379999999987 332 2 3778999999875444457899988 5
Q ss_pred CC
Q 020573 274 PP 275 (324)
Q Consensus 274 PP 275 (324)
||
T Consensus 79 PP 80 (127)
T PF03686_consen 79 PP 80 (127)
T ss_dssp --
T ss_pred CC
Confidence 55
No 315
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.14 E-value=5 Score=35.75 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=52.3
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cCCCCeeEE
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLSGV 270 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~~~~fDlI 270 (324)
+++-.| |+|.++..+++++- .+.+|++++.+++..+...+++...+ ..++++++.|..+.-. ....++|++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 566566 67888888887662 34689999999877665545444332 2368999999876321 112357999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
|.|..+.
T Consensus 81 v~~ag~~ 87 (243)
T PRK07102 81 LIAVGTL 87 (243)
T ss_pred EECCcCC
Confidence 9987654
No 316
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.55 E-value=6.9 Score=35.14 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++..|+.+.-. ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456788777 68888888887652 35689999999887766666665444 348888888875311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+..|++|.|.-+..
T Consensus 86 ~~~d~li~~ag~~~ 99 (255)
T PRK07523 86 GPIDILVNNAGMQF 99 (255)
T ss_pred CCCCEEEECCCCCC
Confidence 56899999976543
No 317
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=86.51 E-value=1.2 Score=40.48 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++.++.+.+ .. ....+++|+.||+|+++..+... ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~i-p~---~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELI-PK---NKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS--S----S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHc-CC---CCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 455566655 21 14569999999999999988763 478999999998776665
No 318
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.42 E-value=0.48 Score=47.46 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~~~~fD 268 (324)
.++++|=+|-|+|.+...+-..+ |..++++|+++|+++++|+++.....-. +.+++-.|-.+.+. .....||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 35678999999999999998887 7899999999999999999997543211 23333333332221 1235799
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
++..+
T Consensus 373 vl~~d 377 (482)
T KOG2352|consen 373 VLMVD 377 (482)
T ss_pred EEEEE
Confidence 98875
No 319
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.35 E-value=1.2 Score=41.66 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al 233 (324)
..+++|||+|||+|.-.+.+... ....++..|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence 45789999999999999999886 347899999998877
No 320
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=85.15 E-value=8.8 Score=34.46 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=52.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|=.| |+|.++..+++.+. .+.+|+.+|.+....+.....+....-..++.++..|+.+.-. ...++
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3577777 67888888877652 3578999999987665544444322111358889999865311 11257
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
.|+||.|.-+..
T Consensus 82 id~vv~~ag~~~ 93 (259)
T PRK12384 82 VDLLVYNAGIAK 93 (259)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
No 321
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.94 E-value=10 Score=33.66 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=54.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|=.| |+|.++..+++++. .+.+|+.++.+++.++.....+.......++.++.+|+.+.-. ...+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567666 68888888887662 2368999999988777665555443223358899999876411 11246
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
.|+||.|.-+..
T Consensus 82 id~vi~~ag~~~ 93 (248)
T PRK08251 82 LDRVIVNAGIGK 93 (248)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
No 322
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.80 E-value=9.4 Score=36.16 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------
Q 020573 193 GLRDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------- 260 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~---iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--------- 260 (324)
...++.||==|.|+|. +++.+|++ +++++..|++++..+...++++++| +++.+..|..+.-
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHH
Confidence 3457788888888873 56666664 4689999999999988888888876 5899999887531
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcc
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~ 283 (324)
+..-|..|++|.|---.+...+-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll 131 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLL 131 (300)
T ss_pred HHhcCCceEEEeccccccCCCcc
Confidence 12247899999996655544433
No 323
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.65 E-value=9.7 Score=34.11 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.| |+|.++..+++.+. .+.+|+.++.+++.++.....++..+ .++.++.+|+.+.-. ...
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456777777 67777888777652 35799999999877766655555544 358889999865311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|.-+..
T Consensus 87 ~~id~vi~~ag~~~ 100 (256)
T PRK06124 87 GRLDILVNNVGARD 100 (256)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999976643
No 324
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.47 E-value=4.2 Score=38.60 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++.+|+=.|+| .|.+++.+|+.. ...+|+++|.+++.++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH
Confidence 46788888876 566677778875 22379999999998887764
No 325
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.30 E-value=4.5 Score=37.48 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
..+..|+|..+|+|..+++..+. +.+++|+|++++.++.+.+.+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhh
Confidence 35779999999999999987764 468999999999999999988755
No 326
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.93 E-value=0.54 Score=47.32 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=56.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
..|+|+.+|.|.||.+|... + |+.+-.-+..-.-.-..+-.-|+- =..-||-+.+......||+|-+|-=|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIydRGLI----G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIYDRGLI----GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhhhcccc----hhccchhhccCCCCcchhheehhhhh
Confidence 36999999999999999764 3 444444332111011111122331 23457877776656799999986222
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. .+..+. .+..++-+.-|.|+|||+
T Consensus 438 s-------------~~~~rC----------~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 438 S-------------LYKDRC----------EMEDILLEMDRILRPGGW 462 (506)
T ss_pred h-------------hhcccc----------cHHHHHHHhHhhcCCCce
Confidence 1 111111 234678888999999995
No 327
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.86 E-value=4.9 Score=36.97 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=51.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--------cCCCCeeE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKLSG 269 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--------~~~~~fDl 269 (324)
.++=-| .|.++..+++.+..+.+|+.+|.+++.++.+.+.++..+ .++.++..|+.+.-. ...+++|+
T Consensus 4 ~~lItG--a~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIG--AGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEEC--CChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 344444 467999999988667899999999877665555554433 258888888865310 01257999
Q ss_pred EEEcCCCC
Q 020573 270 VVSNPPYI 277 (324)
Q Consensus 270 IVsNPPYi 277 (324)
+|.|.-+.
T Consensus 80 li~nAG~~ 87 (275)
T PRK06940 80 LVHTAGVS 87 (275)
T ss_pred EEECCCcC
Confidence 99997653
No 328
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.70 E-value=10 Score=33.53 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+- .+.+|++++.++..+..+.+.+...+ .++.++.+|+.+... ...+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45677555 57888888877652 24689999999876665555555443 248899999876311 1124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
++|+||.|..+..
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 7899999986654
No 329
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.28 E-value=2.6 Score=40.41 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
....+.+||=+|+| .|..+...|+.+ ...+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 34567899999999 688888889988 56899999999999999997
No 330
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.03 E-value=2.8 Score=40.71 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.+..+++|||+|.|.|.-+.++-..++.-..++-++.|+..-++.
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~ 154 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG 154 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH
Confidence 556678899999999998888888773334577888887544443
No 331
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.98 E-value=13 Score=33.63 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~ 263 (324)
.++.+|-.|.++ +.|+.++|+.+. .+++|+.++.+.+..+.+++-.+..+ .+.++..|..+.- ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 466888889887 478888877652 34688888988655443333333322 2456777876531 111
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.++.|++|.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 26799999997554
No 332
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=82.44 E-value=27 Score=32.40 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=61.5
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPY 276 (324)
+..-+||--++..+.+. +-++.++|+.++=....++|.. -..++.+.++|-|..+.. ..++=-+|+.+|||
T Consensus 93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPf 166 (279)
T COG2961 93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPF 166 (279)
T ss_pred cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCc
Confidence 89999999999988774 4689999999998888888876 234699999998865431 23466799999999
Q ss_pred CCCCCc
Q 020573 277 IPSDDI 282 (324)
Q Consensus 277 i~~~~~ 282 (324)
-..++.
T Consensus 167 E~~~eY 172 (279)
T COG2961 167 ELKDEY 172 (279)
T ss_pred ccccHH
Confidence 866554
No 333
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.44 E-value=5.3 Score=35.68 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----------ccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-----------LKD 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-----------l~~ 262 (324)
++++++=.| |+|.++..+++.+. .+.+|+++|.+.+.++...+.++..+. .++.++..|.... +..
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHH
Confidence 456777777 67888888887652 246999999998877666665555443 3477777776421 111
Q ss_pred CCCCeeEEEEcCCC
Q 020573 263 VEGKLSGVVSNPPY 276 (324)
Q Consensus 263 ~~~~fDlIVsNPPY 276 (324)
..++.|.||.|--.
T Consensus 89 ~~~~id~vi~~Ag~ 102 (247)
T PRK08945 89 QFGRLDGVLHNAGL 102 (247)
T ss_pred HhCCCCEEEECCcc
Confidence 12578999998543
No 334
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.20 E-value=0.44 Score=43.90 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=47.1
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPY 276 (324)
+..-.||=.++..+.+. .-+.+.+|+.+...+..++|+.. ..++++++.|-++.+.. ...+=-+|+.+|||
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 77889999999888774 47999999999999999888764 24799999999885432 23456799999999
Q ss_pred CCCCCcc
Q 020573 277 IPSDDIS 283 (324)
Q Consensus 277 i~~~~~~ 283 (324)
-..++..
T Consensus 136 E~~~dy~ 142 (245)
T PF04378_consen 136 EQKDDYQ 142 (245)
T ss_dssp -STTHHH
T ss_pred CCchHHH
Confidence 8766543
No 335
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.08 E-value=15 Score=32.58 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++-.| |+|.++..+++++ ..+.+|+.++.++...+.....+...+ .++.++..|..+... ...+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45677777 5888888888765 245699999999877665554554333 468889999865321 0124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
..|+||.|....
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 789999997654
No 336
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.55 E-value=17 Score=32.41 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+ .+++++..|+.+.-. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356777777 77888888887662 34689999999888766665554433 358888888865310 112
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+++|+||.|-..
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999998764
No 337
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.49 E-value=16 Score=32.88 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-----cCCCCeeE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLSG 269 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-----~~~~~fDl 269 (324)
+++++=.|+ +|.++..+++.+. .+.+|++++.+++.++.+...++... ..++.++..|+.+.-. ...++.|+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 456777774 5667777766542 34699999999887766665555432 2358888888865311 11257999
Q ss_pred EEEcCCCCC
Q 020573 270 VVSNPPYIP 278 (324)
Q Consensus 270 IVsNPPYi~ 278 (324)
+|.|.-...
T Consensus 85 lv~~ag~~~ 93 (259)
T PRK06125 85 LVNNAGAIP 93 (259)
T ss_pred EEECCCCCC
Confidence 999976543
No 338
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.46 E-value=13 Score=33.49 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+...++...+.+...+ .++.++.+|+.+.-. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 345777777 78888998888762 24689999999887776666655443 358889999876311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+.+|.||.|..+.
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999997653
No 339
>PRK05599 hypothetical protein; Provisional
Probab=80.81 E-value=9.2 Score=34.41 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=53.6
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCCCeeE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKLSG 269 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~~fDl 269 (324)
++=.|+ ++.++.++++.+..+.+|+.++.+++.++...+.++..+- +++.++..|..+.- ....++.|+
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 454555 5677888888776678899999998888776666665542 34788888876531 112368999
Q ss_pred EEEcCCCC
Q 020573 270 VVSNPPYI 277 (324)
Q Consensus 270 IVsNPPYi 277 (324)
+|.|.-+.
T Consensus 81 lv~nag~~ 88 (246)
T PRK05599 81 AVVAFGIL 88 (246)
T ss_pred EEEecCcC
Confidence 99997654
No 340
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=80.45 E-value=17 Score=32.58 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++++. .+.+|+.++.++..+......+...+ .++.++..|+.+... ...+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45666666 66788888877652 34689999999877766655555443 347788888865311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|.-+.
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 789999998654
No 341
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=80.44 E-value=1.7 Score=39.43 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
.|.+-.-.+++.+++.+ ...++...+|+--|.|.-+..+.+.. +..++++.|.+|.|-++|+....
T Consensus 23 ~~~~HVPVm~devl~~l----spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 23 VPSSHVPVMLDEVLDIL----SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ccccCCceehhhHHHHc----CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 34433446788888887 44567899999999999999999986 88999999999999999987764
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.39 E-value=3.2 Score=32.74 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccC-CCCeeEEEE
Q 020573 204 TGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS 272 (324)
Q Consensus 204 cGsG~iai~la~~~~p~~-~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~-~~~fDlIVs 272 (324)
||.|.++..+++.+..+. .|+.+|.+++.++.++.. + +.++.||..+.- ... -.+.|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEE
Confidence 788889999988775555 899999999997776642 2 779999987642 111 146787776
No 343
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.30 E-value=19 Score=32.69 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++.++=.|.++ +.++.++++.+. .+++|+.++.+....+..++-.+... ..++.+++.|..+.-. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 356788888874 788888887662 35688888654321111222222221 2358888888865311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 85 ~g~ld~lv~nag~~ 98 (257)
T PRK08594 85 VGVIHGVAHCIAFA 98 (257)
T ss_pred CCCccEEEECcccC
Confidence 26899999997654
No 344
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.25 E-value=16 Score=32.93 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|-.|.++ +.|+.++++++. .+.+|+.++.+....+.+++. . ..++.+++.|+.+.-. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 456788888775 678888877662 457899888875433322221 1 1347888899875311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999998654
No 345
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.95 E-value=19 Score=31.92 Aligned_cols=79 Identities=13% Similarity=-0.058 Sum_probs=53.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
.+++|=.| |+|.++..+++++. .+.+|++++.+++..+...+.++..+ .++.++.+|+.+.-. ...+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34677777 57888888887652 34689999999876655554444332 458899999876311 0124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|.-+.
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 689999997654
No 346
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.87 E-value=18 Score=32.05 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.|+ +|.++..+++.+. .+.+|++++.+.+........+. . ..++.++.+|+.+... ...+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456776665 6778887777542 34689999999877665555544 2 3458899999876311 0124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
++|+||.|..+..
T Consensus 81 ~id~vi~~ag~~~ 93 (252)
T PRK06138 81 RLDVLVNNAGFGC 93 (252)
T ss_pred CCCEEEECCCCCC
Confidence 7899999987654
No 347
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.67 E-value=15 Score=32.87 Aligned_cols=81 Identities=14% Similarity=-0.047 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++..|+.+.-. ...
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567777775 5566766666542 35689999999888776666665544 358888898865311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
++.|++|.|.-+..
T Consensus 85 g~id~lv~~ag~~~ 98 (253)
T PRK05867 85 GGIDIAVCNAGIIT 98 (253)
T ss_pred CCCCEEEECCCCCC
Confidence 57999999976543
No 348
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.17 E-value=21 Score=32.43 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------c---cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------K---DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~---~~~ 264 (324)
.++++|-.| |+|.++..+++.+. .+.+|++++.+++.++...+.+...+ .++.++..|..+.- . ...
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 345777776 67888888877652 35689999999877665544444433 34788888886521 0 012
Q ss_pred CCeeEEEEcCC
Q 020573 265 GKLSGVVSNPP 275 (324)
Q Consensus 265 ~~fDlIVsNPP 275 (324)
+++|++|.|.-
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46899999864
No 349
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.13 E-value=11 Score=35.01 Aligned_cols=117 Identities=17% Similarity=0.101 Sum_probs=67.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHH------HHHHHHHHHHcCCCCcEEEEEcccccccc--c-CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLA------AAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~a------l~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~-~~~ 265 (324)
..+|+.+|=|-=.++..++..++ ....+++..++..- ...|+.|++....-+-.-+...|.+..-. . -.+
T Consensus 57 ~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~ 136 (282)
T KOG4174|consen 57 KQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRLQ 136 (282)
T ss_pred cccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEeccccccc
Confidence 44799999999999999999886 44566666555433 12356666543211112233334333111 1 136
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccC-CCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK-PDK 323 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lk-pgG 323 (324)
+||-||.|-|.-...-........ -| + --+.++.|++.|..+|+ ..|
T Consensus 137 ~~d~IiFNFPH~G~g~~~e~d~~~---i~---~-----~qkL~rgFle~akemL~~edG 184 (282)
T KOG4174|consen 137 RYDNIIFNFPHSGKGIKFEQDRNI---IP---L-----HQKLFRGFLESAKEMLKDEDG 184 (282)
T ss_pred ccceEEEcCCCCCCCcccccchHH---HH---H-----HHHHHHHHHHHHHHHHHhcCC
Confidence 899999999976543211111100 00 0 13567889999999998 445
No 350
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.05 E-value=11 Score=31.22 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=54.6
Q ss_pred EEEEcCCccHHHHHHHHHhCC--CcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCC
Q 020573 199 WVDLGTGSGAIAIGIARVLGS--KGSIIAVDLN--PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p--~~~V~gvDis--~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~ 265 (324)
+|=.| |+|.++..+++.+-. ..+|+.+..+ .+..+.....++..+ .++.+++.|..+.- ....+
T Consensus 3 ~lItG-a~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITG-ASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEC-CCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 44444 456777777766522 3588999988 555555555566555 46999999976531 11136
Q ss_pred CeeEEEEcCCCCCCCCcccc
Q 020573 266 KLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l 285 (324)
.+|++|.|........+..+
T Consensus 80 ~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp SESEEEEECSCTTSBSGGGS
T ss_pred cccccccccccccccccccc
Confidence 89999999888765544443
No 351
>PRK06914 short chain dehydrogenase; Provisional
Probab=78.99 E-value=24 Score=32.04 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=53.9
Q ss_pred CeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--------cCCCCe
Q 020573 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKL 267 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--------~~~~~f 267 (324)
+++|-.| |+|.++..+++.+ ..+.+|++++.+++.++.........+...++.++.+|+.+.-. ...++.
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 3566655 5667777777654 23568999999887776665555554544569999999876321 112578
Q ss_pred eEEEEcCCCCC
Q 020573 268 SGVVSNPPYIP 278 (324)
Q Consensus 268 DlIVsNPPYi~ 278 (324)
|+||.|.-+..
T Consensus 83 d~vv~~ag~~~ 93 (280)
T PRK06914 83 DLLVNNAGYAN 93 (280)
T ss_pred eEEEECCcccc
Confidence 99999976543
No 352
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=78.54 E-value=4.4 Score=37.43 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=56.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHHcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL---G-SKGSIIAVDLN--------------------------PLAAAVAAFNAQRYGL 245 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~---~-p~~~V~gvDis--------------------------~~al~~Ar~N~~~~gl 245 (324)
++.+++.||--|..++.++..+ + ++.+|++.|-= ...++..++|..++|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 5689999999998777665432 1 35678888821 1234555566655664
Q ss_pred -CCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 246 -QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 246 -~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.++++++.|.+.+.++.. .+++-++-.+ +-.|+| .+..++..+..|.|||
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---------------~DlYes-------------T~~aLe~lyprl~~GG 206 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---------------CDLYES-------------TKDALEFLYPRLSPGG 206 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------------------SHHH-------------HHHHHHHHGGGEEEEE
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe---------------ccchHH-------------HHHHHHHHHhhcCCCe
Confidence 457999999987766532 2334333331 213443 3356777788888888
Q ss_pred C
Q 020573 324 W 324 (324)
Q Consensus 324 ~ 324 (324)
+
T Consensus 207 i 207 (248)
T PF05711_consen 207 I 207 (248)
T ss_dssp E
T ss_pred E
Confidence 4
No 353
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=78.25 E-value=8 Score=35.97 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 194 ~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..+.+||..|+| .|..++.+|+.. +.+|++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 345688888876 477888888875 4789999999988776654
No 354
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.86 E-value=14 Score=32.82 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc----c--------
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----K-------- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l----~-------- 261 (324)
++++++=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+- ..+.++..|+.+.. .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHH
Confidence 356788888 57778888777652 356899999999877666655544432 23566666664311 0
Q ss_pred cCCCCeeEEEEcCCC
Q 020573 262 DVEGKLSGVVSNPPY 276 (324)
Q Consensus 262 ~~~~~fDlIVsNPPY 276 (324)
...+.+|+||.|.-+
T Consensus 83 ~~~~~id~vi~~ag~ 97 (239)
T PRK08703 83 ATQGKLDGIVHCAGY 97 (239)
T ss_pred HhCCCCCEEEEeccc
Confidence 011568999988654
No 355
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=77.81 E-value=2.2 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~ 230 (324)
+...||||||..|......++.++.+.-|+|||+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 456799999999999999999987788999999876
No 356
>PRK07985 oxidoreductase; Provisional
Probab=77.03 E-value=12 Score=34.90 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccccccc---------cc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP--LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KD 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~--~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~ 262 (324)
.++++|-.| |+|.++..+++.+. .+.+|+.++.+. +..+...+.+...+ .++.++..|+.+.- ..
T Consensus 48 ~~k~vlITG-as~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788888 56777777776652 346788876542 33333333333333 35788889887531 11
Q ss_pred CCCCeeEEEEcCCC
Q 020573 263 VEGKLSGVVSNPPY 276 (324)
Q Consensus 263 ~~~~fDlIVsNPPY 276 (324)
..++.|++|.|.-+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 12578999998754
No 357
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=76.94 E-value=14 Score=33.34 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=50.9
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~~f 267 (324)
++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.+.+.++..+ ++.++..|+.+.- ....+++
T Consensus 2 ~vlItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTA-SSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEc-CCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 355556 45667777777652 35789999999988777666665433 4788889986531 0112579
Q ss_pred eEEEEcCCC
Q 020573 268 SGVVSNPPY 276 (324)
Q Consensus 268 DlIVsNPPY 276 (324)
|++|.|.-+
T Consensus 78 d~li~naG~ 86 (259)
T PRK08340 78 DALVWNAGN 86 (259)
T ss_pred CEEEECCCC
Confidence 999999754
No 358
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.84 E-value=23 Score=31.22 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAV-DLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gv-Dis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++|=.| |+|.++..+++.+. .+.+|+.+ +.+++.++.....+...+ .++.++..|+.+.-. ...
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34566665 57888888887652 34688888 998877766666555432 358899999876321 011
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+.+|+||.|..+..
T Consensus 82 ~~id~vi~~ag~~~ 95 (247)
T PRK05565 82 GKIDILVNNAGISN 95 (247)
T ss_pred CCCCEEEECCCcCC
Confidence 37999999987764
No 359
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.82 E-value=18 Score=32.80 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--c-------CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~-------~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|++++.+++..+...+.+...+...++.++..|+.+... . ..+
T Consensus 7 ~k~vlItG-asg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTG-GGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788777 45668888877652 3468999999887665544444433222458889999876321 0 024
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
+.|++|.|--.
T Consensus 86 ~~d~li~~ag~ 96 (276)
T PRK05875 86 RLHGVVHCAGG 96 (276)
T ss_pred CCCEEEECCCc
Confidence 68999998643
No 360
>PRK06194 hypothetical protein; Provisional
Probab=76.81 E-value=23 Score=32.28 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=52.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--cc-------CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KD-------VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~-------~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.+|.+.+.++.....+...+ .++.++.+|+.+.- .. ..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45677444 66788888877652 35689999998877665544444333 25888999986531 10 124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
+.|+||.|.-...
T Consensus 83 ~id~vi~~Ag~~~ 95 (287)
T PRK06194 83 AVHLLFNNAGVGA 95 (287)
T ss_pred CCCEEEECCCCCC
Confidence 6899999976543
No 361
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=76.79 E-value=24 Score=31.26 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=51.3
Q ss_pred eEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~~f 267 (324)
++|=.| |+|.++..+++.+ ..+.+|++++.++...+.....+...+ .++.++.+|+.+.- ....+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455444 6788888888765 234689999999876655554444333 35889999987632 1112468
Q ss_pred eEEEEcCCCC
Q 020573 268 SGVVSNPPYI 277 (324)
Q Consensus 268 DlIVsNPPYi 277 (324)
|+||.|.-+.
T Consensus 80 d~vi~~a~~~ 89 (255)
T TIGR01963 80 DILVNNAGIQ 89 (255)
T ss_pred CEEEECCCCC
Confidence 9999987543
No 362
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.96 E-value=12 Score=38.81 Aligned_cols=81 Identities=14% Similarity=-0.014 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEccccccc--ccCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGL-------QDIIEIRQGSWFGKL--KDVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl-------~~rv~~~~gD~~~~l--~~~~ 264 (324)
.++.||-. .|+|.++..+++++ ..+.+|++++.+.+.+.....++...++ ..++.++.+|+.+.- ...-
T Consensus 79 ~gKvVLVT-GATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVA-GATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 34455544 45788888888765 2456899999998776555444433211 135899999997632 1122
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+..|+||+|--.
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 578999998543
No 363
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.93 E-value=29 Score=31.16 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|-.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.+...+...++.++..|+.+.-. ...
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3557777775 5677777776552 3578999999988877766666543233458889999865311 012
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+.+|++|.|--.
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 579999998654
No 364
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=75.88 E-value=21 Score=35.04 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQG 254 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r-v~~~~g 254 (324)
-|++++.+.+.. ...+|+=++=.-|++++.++.. ++. .+ .| |--+-.-.++|++++|+... +++.
T Consensus 32 de~ll~~~~~~~-------~~~~~~i~nd~fGal~~~l~~~-~~~-~~--~d-s~~~~~~~~~n~~~n~~~~~~~~~~-- 97 (378)
T PRK15001 32 DEYLLQQLDDTE-------IRGPVLILNDAFGALSCALAEH-KPY-SI--GD-SYISELATRENLRLNGIDESSVKFL-- 97 (378)
T ss_pred HHHHHHHHhhcc-------cCCCEEEEcCchhHHHHHHHhC-CCC-ee--eh-HHHHHHHHHHHHHHcCCCcccceee--
Confidence 366677666532 1137999999999999999964 231 11 33 33455667899999998643 4444
Q ss_pred ccccccccCCCCeeEEEE
Q 020573 255 SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 255 D~~~~l~~~~~~fDlIVs 272 (324)
+..+.++ +.+|+|+.
T Consensus 98 ~~~~~~~---~~~d~vl~ 112 (378)
T PRK15001 98 DSTADYP---QQPGVVLI 112 (378)
T ss_pred ccccccc---CCCCEEEE
Confidence 3333333 46999998
No 365
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.81 E-value=6.4 Score=37.97 Aligned_cols=43 Identities=33% Similarity=0.469 Sum_probs=36.9
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.+.+|+=+||| .|.+++.+++.+ ...+|+++|.+++-++.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 34489999999 577888888886 56899999999999999987
No 366
>PRK09242 tropinone reductase; Provisional
Probab=75.63 E-value=30 Score=30.99 Aligned_cols=81 Identities=17% Similarity=-0.025 Sum_probs=54.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+.+.++....++....-..++.++..|+.+.- ....+
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456777665 5667777766552 357899999998887776666654422245888999987531 11125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|+||.|.-+.
T Consensus 88 ~id~li~~ag~~ 99 (257)
T PRK09242 88 GLHILVNNAGGN 99 (257)
T ss_pred CCCEEEECCCCC
Confidence 799999998664
No 367
>PRK08643 acetoin reductase; Validated
Probab=75.52 E-value=25 Score=31.40 Aligned_cols=79 Identities=24% Similarity=0.191 Sum_probs=53.6
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
++|=.| |+|.++..+++.+- .+.+|+.++.+++.++.....+...+ .++.++..|+.+.-. ...++.
T Consensus 4 ~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 4 VALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 455445 66778888777652 35689999999887776666665543 358889999876321 112578
Q ss_pred eEEEEcCCCCCC
Q 020573 268 SGVVSNPPYIPS 279 (324)
Q Consensus 268 DlIVsNPPYi~~ 279 (324)
|++|.|-.+.+.
T Consensus 81 d~vi~~ag~~~~ 92 (256)
T PRK08643 81 NVVVNNAGVAPT 92 (256)
T ss_pred CEEEECCCCCCC
Confidence 999999866543
No 368
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=75.24 E-value=27 Score=31.00 Aligned_cols=80 Identities=23% Similarity=0.162 Sum_probs=52.4
Q ss_pred eEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
+++=.| |+|.++..+++.+ ..+.+|+.++.++..++...+.+...+ .++.++..|+.+.-. ...++.
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 355555 5788888877665 235689999998776665555454443 358888999865311 112468
Q ss_pred eEEEEcCCCCCCC
Q 020573 268 SGVVSNPPYIPSD 280 (324)
Q Consensus 268 DlIVsNPPYi~~~ 280 (324)
|++|.|..+....
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 9999998765443
No 369
>PRK07814 short chain dehydrogenase; Provisional
Probab=74.98 E-value=29 Score=31.35 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+ ..+.+|++++.+++.++...+.++..+ .++.++..|..+.-. ...
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 355777777 5777888887754 235799999999877765555554433 358888898875321 012
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+++|+||.|.-+
T Consensus 86 ~~id~vi~~Ag~ 97 (263)
T PRK07814 86 GRLDIVVNNVGG 97 (263)
T ss_pred CCCCEEEECCCC
Confidence 478999998654
No 370
>PRK07024 short chain dehydrogenase; Provisional
Probab=74.46 E-value=15 Score=33.02 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=48.6
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
+++=.| |+|.++..+++.+. .+.+|+.+|.+++.++...+.+...+ ++.++..|+.+.-. ...+..
T Consensus 4 ~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 4 KVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred EEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 555555 47788888887662 34689999999877655444332221 58899999875310 112468
Q ss_pred eEEEEcCC
Q 020573 268 SGVVSNPP 275 (324)
Q Consensus 268 DlIVsNPP 275 (324)
|++|.|.-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 99999864
No 371
>PRK06182 short chain dehydrogenase; Validated
Probab=74.45 E-value=20 Score=32.59 Aligned_cols=74 Identities=16% Similarity=0.033 Sum_probs=49.1
Q ss_pred CeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
++++=.| |+|.++..+++.+ ..+.+|++++.+++.++... . .+++++.+|..+.-. ...+.
T Consensus 4 k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4677666 5677888888765 24568999999987654322 1 137788888865311 01247
Q ss_pred eeEEEEcCCCCCC
Q 020573 267 LSGVVSNPPYIPS 279 (324)
Q Consensus 267 fDlIVsNPPYi~~ 279 (324)
+|++|.|..+...
T Consensus 75 id~li~~ag~~~~ 87 (273)
T PRK06182 75 IDVLVNNAGYGSY 87 (273)
T ss_pred CCEEEECCCcCCC
Confidence 8999999876543
No 372
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.82 E-value=45 Score=30.63 Aligned_cols=79 Identities=18% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
++.+|=.|.++ +.|+.++|+.+. .+++|+.++.+....+.+++..+..+ .. .+++.|..+.-. ...
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 45788888763 677877777652 35689999988543333333333333 22 567778765311 113
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|++|.|.-+.
T Consensus 82 g~iDilVnnAG~~ 94 (274)
T PRK08415 82 GKIDFIVHSVAFA 94 (274)
T ss_pred CCCCEEEECCccC
Confidence 6899999998664
No 373
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.72 E-value=36 Score=30.59 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++.++=.| |+|.++..+++.+. .+.+|+.++.+++.++.+.+.+....-..++.++..|+.+.-. ...
T Consensus 7 ~~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 355677777 55667777776652 3578999999988777666555443222357888888876311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|++|.|--+.
T Consensus 86 g~id~li~~Ag~~ 98 (265)
T PRK07062 86 GGVDMLVNNAGQG 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997653
No 374
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.47 E-value=18 Score=31.78 Aligned_cols=76 Identities=16% Similarity=0.043 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------c---CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D---VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~---~~~ 265 (324)
+.+++=.| |+|.++..+++.+. .+.+|++++.++.......+.+... .+++++.+|+.+... . ..+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45788777 58888888887652 3568999999987766555544432 358899999865311 0 114
Q ss_pred CeeEEEEcCC
Q 020573 266 KLSGVVSNPP 275 (324)
Q Consensus 266 ~fDlIVsNPP 275 (324)
.+|+||.|.-
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 375
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=73.47 E-value=11 Score=35.22 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlIVs 272 (324)
++++|-.| |+|.++..+++.+- .+.+|+++..++.............+...+++++.+|..+.- ...-...|+||.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 45677766 78999999888662 345788877766543322221111233346899999987642 111235899998
Q ss_pred cCC
Q 020573 273 NPP 275 (324)
Q Consensus 273 NPP 275 (324)
|--
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 864
No 376
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.42 E-value=30 Score=32.49 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~ 264 (324)
.+++++=.|+ +|.|+..+++.+. .+.+|+.+..+.+..+.+.+.+....-..++.++..|+.+.- ....
T Consensus 13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3456665555 5667777776552 357899999998877666666554322235889999986531 1113
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
++.|++|.|.-.
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 579999999754
No 377
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.40 E-value=42 Score=30.39 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCcc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG-~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++.++=-|+++| .++.++++.+. .+++|+.++.++...+.+++..+..+ ...+++.|+.+.-. ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHH
Confidence 3556777787664 46666665542 35688888887543333443333333 12356778765311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 36799999997653
No 378
>PRK06181 short chain dehydrogenase; Provisional
Probab=72.98 E-value=25 Score=31.49 Aligned_cols=76 Identities=16% Similarity=0.043 Sum_probs=50.7
Q ss_pred eEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
++|=.| |+|.++..+++.+ ..+.+|++++.++...+...+.++..+ .++.++.+|+.+.-. ...+..
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 466555 6677888877654 235799999999877766655555443 358889999876321 011468
Q ss_pred eEEEEcCCC
Q 020573 268 SGVVSNPPY 276 (324)
Q Consensus 268 DlIVsNPPY 276 (324)
|+||.|.-.
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999998643
No 379
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.93 E-value=32 Score=31.39 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=48.2
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCC
Q 020573 196 DGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (324)
Q Consensus 196 ~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~ 264 (324)
++.+|=.|.|+ +.|+.++++.+. .+++|+.++.+....+.+++-.... +++.++..|+.+.- ....
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 45788888876 377777776652 3468888887743223332222222 23567788886531 1112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|.-+.+
T Consensus 83 g~iD~linnAg~~~ 96 (262)
T PRK07984 83 PKFDGFVHSIGFAP 96 (262)
T ss_pred CCCCEEEECCccCC
Confidence 67999999986543
No 380
>PLN02253 xanthoxin dehydrogenase
Probab=72.66 E-value=19 Score=32.75 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.+|.+++..+.....+ +...++.+++.|..+.-. ...+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 45677666 67888888887652 3578999999876654433332 223458899999875311 1125
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
+.|++|.|.-.
T Consensus 94 ~id~li~~Ag~ 104 (280)
T PLN02253 94 TLDIMVNNAGL 104 (280)
T ss_pred CCCEEEECCCc
Confidence 78999998754
No 381
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.33 E-value=31 Score=30.89 Aligned_cols=80 Identities=19% Similarity=0.100 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|-.| |+|.++..+++.+ ..+.+|+.++.+...++.+...++..+ .++.++..|+.+... ...
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788888 5677777776654 235689999988887766555554433 358888898875321 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|++|.|.-+.
T Consensus 87 ~~~d~li~~ag~~ 99 (255)
T PRK06113 87 GKVDILVNNAGGG 99 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997654
No 382
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.25 E-value=35 Score=30.52 Aligned_cols=81 Identities=17% Similarity=0.042 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPL-AAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~-al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+.. .++...+.++..+ .++.++..|+.+.-. ..
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 355677666 66778888887652 3468999998643 3444444444433 358888898865311 11
Q ss_pred CCCeeEEEEcCCCCC
Q 020573 264 EGKLSGVVSNPPYIP 278 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~ 278 (324)
.++.|++|.|.-+..
T Consensus 84 ~g~id~li~~ag~~~ 98 (254)
T PRK06114 84 LGALTLAVNAAGIAN 98 (254)
T ss_pred cCCCCEEEECCCCCC
Confidence 257899999987643
No 383
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=71.83 E-value=9.1 Score=37.10 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 194 ~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
.++.+||..|+|+ |.+++.+|+.. ...+|+++|.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc
Confidence 3567899999998 88999999986 334699999999988887764
No 384
>PRK06197 short chain dehydrogenase; Provisional
Probab=71.78 E-value=30 Score=32.14 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++..+.+.+.+.......++.++..|+.+.-. ...
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 345666555 57888888887652 3468999999887766665555433222358889999875311 112
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+++|++|.|.-.
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 578999999754
No 385
>PRK07774 short chain dehydrogenase; Provisional
Probab=71.10 E-value=29 Score=30.73 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.++..+++.+ ..+.+|+.++.++.........++..+ .++.++..|..+.-. ...+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45677666 7788888888765 235689999999876655554444322 347788888875321 0124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|+||.|-.+.
T Consensus 83 ~id~vi~~ag~~ 94 (250)
T PRK07774 83 GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEECCCCc
Confidence 689999987764
No 386
>PRK05993 short chain dehydrogenase; Provisional
Probab=71.10 E-value=29 Score=31.67 Aligned_cols=73 Identities=19% Similarity=0.076 Sum_probs=48.4
Q ss_pred CeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------cc----CCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KD----VEG 265 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~~----~~~ 265 (324)
++++=.|+ +|.++..+++.+ ..+.+|++++.+++.++..+. . .++++..|+.+.- .. ..+
T Consensus 5 k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 5 RSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46776664 678888887765 245789999999876653321 2 3677888886531 11 125
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
..|++|.|.-+..
T Consensus 76 ~id~li~~Ag~~~ 88 (277)
T PRK05993 76 RLDALFNNGAYGQ 88 (277)
T ss_pred CccEEEECCCcCC
Confidence 7899999976543
No 387
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.97 E-value=50 Score=30.21 Aligned_cols=80 Identities=18% Similarity=0.060 Sum_probs=49.4
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccC
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~ 263 (324)
.++.+|=.|.+ ++.|+.++|+.+. .+++|+.++.+....+.+++..+..+ ...+++.|+.+.- ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 35678888876 4788888887762 35688887765433333333333333 2456788876521 111
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.++.|++|.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 35799999997654
No 388
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=70.93 E-value=24 Score=26.65 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCH
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNP 230 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~ 230 (324)
+..++...+.+........+++||-+|+-||+ ++..++..|+.++..+||-...
T Consensus 20 ~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 20 ARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 33444444444222223345799999999996 5655777777778888886643
No 389
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=70.91 E-value=4.2 Score=37.50 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+.+|+++-.|.|.+--++-...-|.--|.|+|+++.|-++-..|-..+-+.. +|+-+...-++ . -++|++++.|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd---~--l~~~m~lMSP 77 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFD---K--LQANMLLMSP 77 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhh---h--cccceEeeCC
Confidence 3489999999998877665543366679999999998888777721111110 12222111111 1 2689999999
Q ss_pred CCCCCC
Q 020573 275 PYIPSD 280 (324)
Q Consensus 275 PYi~~~ 280 (324)
|+-|-.
T Consensus 78 pCQPfT 83 (338)
T KOG0919|consen 78 PCQPFT 83 (338)
T ss_pred CCCchh
Confidence 997753
No 390
>PRK06196 oxidoreductase; Provisional
Probab=70.87 E-value=26 Score=32.79 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|++++.+++..+.+...+. ++.++.+|+.+.-. ...
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 355777777 56778888887652 34689999999876654443332 27788888875311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
++.|++|.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997653
No 391
>PRK07831 short chain dehydrogenase; Provisional
Probab=70.67 E-value=44 Score=29.98 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=51.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~-~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++=.|.....++..+++.+. .+.+|+.+|.+++.++.+.+.++. .+- .++.+++.|+.+.-. ...
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45677666432245666555441 346899999998877766665554 232 358889999875311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
++.|++|.|.-+..
T Consensus 96 g~id~li~~ag~~~ 109 (262)
T PRK07831 96 GRLDVLVNNAGLGG 109 (262)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999987543
No 392
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.55 E-value=40 Score=29.90 Aligned_cols=79 Identities=22% Similarity=0.130 Sum_probs=54.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++| +-.|+|.++..+++.+. .+.+|++++.++...+.....++..+ .++.++.+|+.+.-. ...+.
T Consensus 5 ~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 5 KVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555 44468899999988752 34689999999887776666665543 358889999875321 11246
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
+|+||.|-.+..
T Consensus 82 ~d~vi~~a~~~~ 93 (258)
T PRK12429 82 VDILVNNAGIQH 93 (258)
T ss_pred CCEEEECCCCCC
Confidence 899999876543
No 393
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.47 E-value=33 Score=30.94 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=49.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.++..+++.+. .+.+|+.+|.+++.++...+ ..+ .++.++++|+.+.-. ...+
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45677666 56677777777652 35689999999765443322 222 358889999875311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|.-+.
T Consensus 80 ~id~lv~~ag~~ 91 (261)
T PRK08265 80 RVDILVNLACTY 91 (261)
T ss_pred CCCEEEECCCCC
Confidence 789999997654
No 394
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.25 E-value=31 Score=30.68 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.|+ +|.++..+++.+. .+.+|+.++.+++.++.+.+.++..+ .++.++.+|+.+... ...
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3557777774 6777777776652 24689999999887776666665544 458899999875311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|+||.|.-+.
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997654
No 395
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=70.21 E-value=40 Score=30.15 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.+|.+.+.++...+.. ..++.++..|+.+.-. ...+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 44677666 77888888887652 3568999999987665443322 2348888999865311 1124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|..+.
T Consensus 80 ~id~li~~ag~~ 91 (257)
T PRK07067 80 GIDILFNNAALF 91 (257)
T ss_pred CCCEEEECCCcC
Confidence 789999987654
No 396
>PRK05876 short chain dehydrogenase; Provisional
Probab=69.60 E-value=51 Score=30.18 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-|+ +|.++..+++.+. .+.+|+.+|.++..++.+.+.++..+ .++.++..|+.+.-. ...
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3456775554 5677777776652 34689999999887766555554443 248888999865311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
++.|++|.|.-+..
T Consensus 82 g~id~li~nAg~~~ 95 (275)
T PRK05876 82 GHVDVVFSNAGIVV 95 (275)
T ss_pred CCCCEEEECCCcCC
Confidence 57899999987643
No 397
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=69.32 E-value=41 Score=29.53 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=49.5
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcccccccc---------cCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~-gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
++|-.| |+|.++..+++.+. .+.+|++++.++. +.+++..... ....++.++..|+.+.-. ...++
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 455555 68888888887662 2468999998854 2222222221 123468999999876311 11256
Q ss_pred eeEEEEcCCCCCC
Q 020573 267 LSGVVSNPPYIPS 279 (324)
Q Consensus 267 fDlIVsNPPYi~~ 279 (324)
+|++|.|.-+...
T Consensus 81 id~vi~~ag~~~~ 93 (245)
T PRK12824 81 VDILVNNAGITRD 93 (245)
T ss_pred CCEEEECCCCCCC
Confidence 9999999877643
No 398
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=69.28 E-value=11 Score=37.26 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=48.5
Q ss_pred eEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--cccCCCCeeEEEEc
Q 020573 198 FWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGVVSN 273 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~--l~~~~~~fDlIVsN 273 (324)
+||=+|| |.++...|..+. .+.+|+..|.+.+.++.+..+.. .+++.++-|..+. +..+-..+|+||+-
T Consensus 3 ~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 3 KILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred cEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 6888999 666666555432 23699999999888877766532 2588888888763 11222356877665
Q ss_pred -CCCCC
Q 020573 274 -PPYIP 278 (324)
Q Consensus 274 -PPYi~ 278 (324)
|||+.
T Consensus 76 ~p~~~~ 81 (389)
T COG1748 76 APPFVD 81 (389)
T ss_pred CCchhh
Confidence 55543
No 399
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.01 E-value=46 Score=31.73 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.++..+. ++.++..|+.+.-. ...+
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 446665554 6777777776542 357899999999988877777766553 47888888865311 1126
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|--+.
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 799999997654
No 400
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=68.91 E-value=47 Score=29.37 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.|+ +|.++..+++++- .+.+|++++.++. ..+.+.++..+ .++.++..|+.+.-. ...
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3556777776 4667888777662 3468999998752 22333333333 458889999875311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
++.|++|.|.-+..
T Consensus 79 ~~~d~li~~ag~~~ 92 (248)
T TIGR01832 79 GHIDILVNNAGIIR 92 (248)
T ss_pred CCCCEEEECCCCCC
Confidence 57999999986654
No 401
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.05 E-value=42 Score=29.86 Aligned_cols=79 Identities=19% Similarity=0.057 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++| +-.|+|.++..+++.+. .+.+|+.++.++...+.+.+.++..+ .++.++++|+.+.-. ...+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 44566 55566788877777552 34689999999977766665554443 358889999865311 1124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|.-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 689999987654
No 402
>PRK12743 oxidoreductase; Provisional
Probab=67.34 E-value=49 Score=29.62 Aligned_cols=79 Identities=18% Similarity=0.045 Sum_probs=50.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVD-LNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvD-is~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++|=.|+ +|.++..+++.+- .+.+|+.++ .+...++.+.+.++..+ .++.++..|+.+.-. ...+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46777774 6778888887652 346787764 45555555555555544 358899999876311 1125
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
+.|+||.|.-+..
T Consensus 80 ~id~li~~ag~~~ 92 (256)
T PRK12743 80 RIDVLVNNAGAMT 92 (256)
T ss_pred CCCEEEECCCCCC
Confidence 7899999976643
No 403
>PRK06500 short chain dehydrogenase; Provisional
Probab=66.91 E-value=53 Score=28.97 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~ 265 (324)
+++++=.| |+|.++..+++.+. .+.+|++++.+++.++...+. .+ .++.+++.|..+.- ....+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITG-GTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LG--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 34455444 56778887777652 346899999987655433322 22 34778888875421 11125
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
++|++|.|..+..
T Consensus 80 ~id~vi~~ag~~~ 92 (249)
T PRK06500 80 RLDAVFINAGVAK 92 (249)
T ss_pred CCCEEEECCCCCC
Confidence 7899999987653
No 404
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.83 E-value=17 Score=34.97 Aligned_cols=43 Identities=28% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 020573 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 194 ~~~~~VLDLGcG-sG~iai~la~~~~p~~-~V~gvDis~~al~~Ar~ 238 (324)
.++.+||=.|+| .|.+++.+|+.. +. +|+++|.+++-++.|++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence 345677778875 355666777764 34 69999999988887764
No 405
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.79 E-value=40 Score=31.87 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=49.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-------CCC--
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEG-- 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-------~~~-- 265 (324)
+..++=.| |+|.++..+|+++. .+.+|+.++.+++.++...+.++...-..++..+..|+.+.... .-+
T Consensus 53 g~~~lITG-As~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTG-PTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 45666666 56667777776652 35689999999998877766665432122467777776532111 012
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
..|++|.|.-+
T Consensus 132 didilVnnAG~ 142 (320)
T PLN02780 132 DVGVLINNVGV 142 (320)
T ss_pred CccEEEEecCc
Confidence 35589988654
No 406
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=66.10 E-value=70 Score=28.76 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++-.|+++ .++..+++++ ..+.+|+.++.+++.++.+..+++..+ .++.++..|+.+... ...
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 345677777664 5566655544 135789999999888877776666544 358889999875321 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|--+..
T Consensus 86 ~~id~li~~ag~~~ 99 (265)
T PRK07097 86 GVIDILVNNAGIIK 99 (265)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999987653
No 407
>PRK07109 short chain dehydrogenase; Provisional
Probab=65.82 E-value=63 Score=30.69 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=55.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++.+|+.+.-. ...+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 44566666 56777877777652 35789999999988877777776555 358889999876311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|.-+.
T Consensus 85 ~iD~lInnAg~~ 96 (334)
T PRK07109 85 PIDTWVNNAMVT 96 (334)
T ss_pred CCCEEEECCCcC
Confidence 799999997643
No 408
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.70 E-value=42 Score=29.58 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=53.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.++..+++.+. .+.+|++++.+++.+....+.++..+ .++.++.+|+.+... ...+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45676444 67889988887662 34689999999887766655554333 358999999876321 0115
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|+||.|--+.
T Consensus 84 ~id~vi~~ag~~ 95 (250)
T PRK12939 84 GLDGLVNNAGIT 95 (250)
T ss_pred CCCEEEECCCCC
Confidence 789999986543
No 409
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.69 E-value=50 Score=29.44 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=49.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|-.|+ +|.++..+++.+. .+.+|+.++.++..++.+.+.+...+ .++.++..|..+.-. ...+.
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 35666665 5556666666542 35689999999877766655554433 458889998765210 01257
Q ss_pred eeEEEEcCC
Q 020573 267 LSGVVSNPP 275 (324)
Q Consensus 267 fDlIVsNPP 275 (324)
.|++|.|..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899999864
No 410
>PRK06179 short chain dehydrogenase; Provisional
Probab=65.34 E-value=26 Score=31.61 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=47.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
++++=.| |+|.++..+++++. .+.+|++++.+++.... ..+++++++|+.+.-. ...+.
T Consensus 5 ~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 5 KVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 4677667 57888888887652 35689999988654321 1247888999876311 11257
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
+|++|.|--+..
T Consensus 74 ~d~li~~ag~~~ 85 (270)
T PRK06179 74 IDVLVNNAGVGL 85 (270)
T ss_pred CCEEEECCCCCC
Confidence 899999976644
No 411
>PRK06128 oxidoreductase; Provisional
Probab=65.29 E-value=57 Score=30.17 Aligned_cols=80 Identities=16% Similarity=-0.022 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLA--AAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~a--l~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.+..+.+. .+...+.++..+ .++.++.+|+.+... .
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 345777777 57777878777652 34678777665432 222223333333 357888899875311 1
Q ss_pred CCCCeeEEEEcCCCC
Q 020573 263 VEGKLSGVVSNPPYI 277 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi 277 (324)
..++.|++|.|.-+.
T Consensus 131 ~~g~iD~lV~nAg~~ 145 (300)
T PRK06128 131 ELGGLDILVNIAGKQ 145 (300)
T ss_pred HhCCCCEEEECCccc
Confidence 125789999997653
No 412
>PRK07478 short chain dehydrogenase; Provisional
Probab=64.88 E-value=42 Score=29.95 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=53.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.+...++..+ .++.++..|+.+.-. ...+
T Consensus 6 ~k~~lItG-as~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITG-ASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 44566444 55777777777652 35689999999888777666665554 358888899865311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|..+.
T Consensus 83 ~id~li~~ag~~ 94 (254)
T PRK07478 83 GLDIAFNNAGTL 94 (254)
T ss_pred CCCEEEECCCCC
Confidence 789999997654
No 413
>PRK07904 short chain dehydrogenase; Provisional
Probab=64.68 E-value=28 Score=31.42 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=53.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC--CcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEcccccccc------cC--C
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV--E 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p--~~~V~gvDis~~a-l~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~--~ 264 (324)
+.++|-.|+ +|.++..+++++-. +.+|+.++.+++. ++.+.+.++..+- .+++++..|..+.-. .. .
T Consensus 8 ~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 8 PQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHhc
Confidence 456777776 67888888876522 3689999998764 6655555555442 258999999865311 10 2
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+..|++|.|-.+.
T Consensus 86 g~id~li~~ag~~ 98 (253)
T PRK07904 86 GDVDVAIVAFGLL 98 (253)
T ss_pred CCCCEEEEeeecC
Confidence 5799999886553
No 414
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.50 E-value=10 Score=30.22 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 205 GsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
|.|..++.+|+..+ .+|+++|.++.-++.+++
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh
Confidence 56899999999873 999999999998888764
No 415
>PRK08263 short chain dehydrogenase; Provisional
Probab=64.29 E-value=53 Score=29.79 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=49.7
Q ss_pred CeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|=.| |+|.++..+++.+ ..+.+|++++.++..++..... ..+++.+++.|+.+.-. ...+.
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEK-----YGDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----ccCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566666 6788888888765 2356899999998776543322 12357888888865311 01247
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
+|.||.|.-+..
T Consensus 78 ~d~vi~~ag~~~ 89 (275)
T PRK08263 78 LDIVVNNAGYGL 89 (275)
T ss_pred CCEEEECCCCcc
Confidence 899999976543
No 416
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.27 E-value=44 Score=29.10 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=48.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+ ..+.+|++++.++.-.....+..... .+++..+|+.+.-. ...+
T Consensus 7 ~k~vlItG-atg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK12828 7 GKVVAITG-GFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CCEEEEEC-CCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 45666665 6688888887765 23578999999875443332222222 36677788765210 1124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
+.|+|+.|..+..
T Consensus 82 ~~d~vi~~ag~~~ 94 (239)
T PRK12828 82 RLDALVNIAGAFV 94 (239)
T ss_pred CcCEEEECCcccC
Confidence 7899999987654
No 417
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.22 E-value=62 Score=28.48 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|+.+|.++..++.+.+.++..+ .++.+++.|..+.-. ...+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 557887764 6777777776552 34689999999877766666555443 358888888765210 1124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
.+|+||.|..+.
T Consensus 82 ~id~vi~~ag~~ 93 (253)
T PRK08217 82 QLNGLINNAGIL 93 (253)
T ss_pred CCCEEEECCCcc
Confidence 689999997654
No 418
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.08 E-value=23 Score=31.99 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=50.2
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhC-CCcEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccccccc---------c
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNP--LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------K 261 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~-p~~~V~gvDis~--~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~ 261 (324)
.+++++=.|.| ++.|+.++++.+. .+.+|+.++.+. +.++... +..+ .++.++..|+.+.- .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~---~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIA---KRLP--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHH---HhcC--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 35678888886 7888888887652 356899888763 3333222 2222 24778888886531 1
Q ss_pred cCCCCeeEEEEcCCCC
Q 020573 262 DVEGKLSGVVSNPPYI 277 (324)
Q Consensus 262 ~~~~~fDlIVsNPPYi 277 (324)
...+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 1136899999997654
No 419
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.07 E-value=56 Score=29.24 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--c-------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--K-------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~-------~~~ 264 (324)
.++.+|=.| |+|.++.++++++. .+++|+++|.+.. ....+.+...+ .++.+++.|..+.- . ...
T Consensus 9 ~~k~~lItG-~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 9 EGKVAVVTG-CDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 345677767 46788888888662 3578999987643 22223333333 35788888886521 0 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
++.|++|.|.-+.
T Consensus 84 ~~~D~li~~Ag~~ 96 (253)
T PRK08993 84 GHIDILVNNAGLI 96 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999998664
No 420
>PRK07832 short chain dehydrogenase; Provisional
Probab=63.31 E-value=33 Score=31.11 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=47.6
Q ss_pred EEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCee
Q 020573 199 WVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLS 268 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~fD 268 (324)
++=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.+...+- +.+.++..|+.+.-. ...++.|
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 33344 46777777776542 356899999998877666555554432 225556778754211 1125689
Q ss_pred EEEEcCCCC
Q 020573 269 GVVSNPPYI 277 (324)
Q Consensus 269 lIVsNPPYi 277 (324)
++|.|.-+.
T Consensus 81 ~lv~~ag~~ 89 (272)
T PRK07832 81 VVMNIAGIS 89 (272)
T ss_pred EEEECCCCC
Confidence 999997654
No 421
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.20 E-value=68 Score=28.66 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.|+ +|.++..+++.+ ..+.+|+.++.+. ..+.+.+.+...+ .++.++..|..+.-. ...
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3556777665 556677776655 2356888888873 3333443343333 358889999875311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+.+|++|.|..+..
T Consensus 90 g~id~li~~ag~~~ 103 (258)
T PRK06935 90 GKIDILVNNAGTIR 103 (258)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999987653
No 422
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.18 E-value=96 Score=27.64 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN----PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------- 261 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis----~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--------- 261 (324)
++++|=.| |+|.++..+++.+. .+.+|+.++.+ .+..+...+.++..+ .++.++..|+.+.-.
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 45778777 57778888888763 24566666543 233333333333333 358889999875311
Q ss_pred cCCCCeeEEEEcCCC
Q 020573 262 DVEGKLSGVVSNPPY 276 (324)
Q Consensus 262 ~~~~~fDlIVsNPPY 276 (324)
...++.|++|.|.-.
T Consensus 85 ~~~~~id~li~~ag~ 99 (257)
T PRK12744 85 AAFGRPDIAINTVGK 99 (257)
T ss_pred HhhCCCCEEEECCcc
Confidence 112578999998654
No 423
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.86 E-value=83 Score=27.70 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+- .+.+|+.++.+......+...+...+ .++.++.+|+.+.-. ...+
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34666666 56788888877652 24689999999887776666655443 358899999865311 1124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
+.|++|.|..+..
T Consensus 80 ~~d~vi~~ag~~~ 92 (250)
T TIGR03206 80 PVDVLVNNAGWDK 92 (250)
T ss_pred CCCEEEECCCCCC
Confidence 6899999987653
No 424
>PRK08267 short chain dehydrogenase; Provisional
Probab=62.45 E-value=55 Score=29.25 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=50.4
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cC----CCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV----EGK 266 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~----~~~ 266 (324)
++|-.| |+|.++..+++.+. .+.+|+.++.+++.++....... ..++.++++|+.+.-. .. .++
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 456566 45677777776542 35689999999887666544432 2358899999876311 10 357
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
+|++|.|.-+..
T Consensus 78 id~vi~~ag~~~ 89 (260)
T PRK08267 78 LDVLFNNAGILR 89 (260)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
No 425
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.21 E-value=57 Score=28.59 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++-.|+ +|.++..+++.+ ..+.+|++++.+++....+.+.+... .+++++.+|+.+.-. ...+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457888887 477777777665 23578999999988776554444332 248889999875311 0124
Q ss_pred CeeEEEEcCC
Q 020573 266 KLSGVVSNPP 275 (324)
Q Consensus 266 ~fDlIVsNPP 275 (324)
.+|.++.|..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5798888864
No 426
>PRK07035 short chain dehydrogenase; Provisional
Probab=61.87 E-value=71 Score=28.32 Aligned_cols=79 Identities=18% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|++++.+++.++...+.+...+ .++.+++.|+.+... ...+
T Consensus 8 ~k~vlItGa-s~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGA-SRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 446666664 5666777666542 34699999999887776666555443 347788888765311 1124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|..+.
T Consensus 85 ~id~li~~ag~~ 96 (252)
T PRK07035 85 RLDILVNNAAAN 96 (252)
T ss_pred CCCEEEECCCcC
Confidence 689999988754
No 427
>PRK05650 short chain dehydrogenase; Provisional
Probab=61.80 E-value=81 Score=28.44 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=52.7
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
++|-.| |+|.++..+++.+. .+.+|+.++.+.+.++.+...++..+ .++.++.+|+.+.-. ...+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455455 57778888777652 35689999999887776665555443 358889999875311 112479
Q ss_pred eEEEEcCCCCCC
Q 020573 268 SGVVSNPPYIPS 279 (324)
Q Consensus 268 DlIVsNPPYi~~ 279 (324)
|++|.|-.....
T Consensus 79 d~lI~~ag~~~~ 90 (270)
T PRK05650 79 DVIVNNAGVASG 90 (270)
T ss_pred CEEEECCCCCCC
Confidence 999999765543
No 428
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=61.70 E-value=52 Score=29.70 Aligned_cols=80 Identities=15% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhC-CCcEEEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEcccccccc--------
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNPL---AAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------- 261 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~-p~~~V~gvDis~~---al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-------- 261 (324)
.++.++=.|++ ++.|+..+++.+. .+.+|+.++.+.+ ..+.+++ +...+ .++.+++.|+.+.-.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRE-LTEPL--NPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHH-HHhcc--CcceEeecCcCCHHHHHHHHHHH
Confidence 35678888885 6888888888762 3467777654432 1111222 22222 236677888765311
Q ss_pred -cCCCCeeEEEEcCCCC
Q 020573 262 -DVEGKLSGVVSNPPYI 277 (324)
Q Consensus 262 -~~~~~fDlIVsNPPYi 277 (324)
...+++|++|.|.-+.
T Consensus 82 ~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 82 KQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHcCCCCEEEEccccc
Confidence 1126899999998764
No 429
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=61.03 E-value=3.6 Score=33.85 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=32.5
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++..||+.+.++.+...||+|..++ |.|...-+. |.+ .+++..++++++||+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPel-------Ws~---------------e~~~~l~~~~~~~~~ 85 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPEL-------WSE---------------ELFKKLARLSKPGGT 85 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGG-------SSH---------------HHHHHHHHHEEEEEE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCccc-------CCH---------------HHHHHHHHHhCCCcE
Confidence 67788998877776668999999984 665543221 211 466777788888763
No 430
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.00 E-value=24 Score=34.28 Aligned_cols=47 Identities=32% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
+..++.++.=+||| -|.-++.-|+.. ...+|+|+|++++-+++|++-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhc
Confidence 33467789999998 566666667765 567999999999999998863
No 431
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.77 E-value=24 Score=31.40 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=47.6
Q ss_pred cCC-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccc---------ccCC-CCeeE
Q 020573 203 GTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKL---------KDVE-GKLSG 269 (324)
Q Consensus 203 GcG-sG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~-~gl~~rv~~~~gD~~~~l---------~~~~-~~fDl 269 (324)
|+| ++.|+..+|+.+. .+++|+.++.+.+.++.+-+.+.. .+ .+++..|..+.- .... +++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 455 5667777776642 368999999999986555444443 33 335888886531 0112 78999
Q ss_pred EEEcCCCCCC
Q 020573 270 VVSNPPYIPS 279 (324)
Q Consensus 270 IVsNPPYi~~ 279 (324)
+|.|..+.+.
T Consensus 77 lV~~a~~~~~ 86 (241)
T PF13561_consen 77 LVNNAGISPP 86 (241)
T ss_dssp EEEEEESCTG
T ss_pred EEeccccccc
Confidence 9999766543
No 432
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=60.62 E-value=54 Score=29.27 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.+|.++.. ....+.+...+ .++.++..|+.+.-. ...+
T Consensus 8 ~k~vlVtG-as~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTG-AAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45677666 56777777777652 35689999998643 22333333333 347788888765310 1125
Q ss_pred CeeEEEEcCC
Q 020573 266 KLSGVVSNPP 275 (324)
Q Consensus 266 ~fDlIVsNPP 275 (324)
.+|++|.|--
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 7899999864
No 433
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.53 E-value=61 Score=28.54 Aligned_cols=78 Identities=19% Similarity=0.122 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+- .+.+|++++.++..++....++.. ..++.++.+|+.+.-. ...+
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 34555554 56777777776642 346899999998776665555443 2458899999875321 0124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|+||.|..+.
T Consensus 81 ~~d~vi~~ag~~ 92 (251)
T PRK07231 81 SVDILVNNAGTT 92 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999998664
No 434
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=60.39 E-value=28 Score=32.30 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIVs 272 (324)
+++||=.| |+|.++..+++++- .+.+|++++.+..............+..++++++.+|+.+... ..-..+|.||-
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 34666554 48999999887762 2458888887754322222211112223468999999876421 11235798887
Q ss_pred cCC
Q 020573 273 NPP 275 (324)
Q Consensus 273 NPP 275 (324)
+-.
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 754
No 435
>PRK06101 short chain dehydrogenase; Provisional
Probab=60.28 E-value=66 Score=28.51 Aligned_cols=73 Identities=10% Similarity=-0.185 Sum_probs=45.4
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------ccCCCCeeEE
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KDVEGKLSGV 270 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~~~~~~fDlI 270 (324)
+++=. -|+|.++..+++.+. .+.+|+.++.+++.++.... .+ .++.++.+|+.+.- .......|.+
T Consensus 3 ~vlIt-Gas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 3 AVLIT-GATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----QS--ANIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred EEEEE-cCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----hc--CCCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 34433 457888888887662 35789999999876543322 11 24788888886531 1112246888
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
|.|....
T Consensus 76 i~~ag~~ 82 (240)
T PRK06101 76 IFNAGDC 82 (240)
T ss_pred EEcCccc
Confidence 8887643
No 436
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.24 E-value=20 Score=29.33 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.++|+++|-|-=. .+-.|+++ +..|+++|+++. ++. ..++++..|.+++--..-...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 4589999877432 34444443 378999999976 221 23899999999875444456888888
No 437
>PRK07069 short chain dehydrogenase; Validated
Probab=60.06 E-value=45 Score=29.46 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCeeEEEEc
Q 020573 205 GSGAIAIGIARVLG-SKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLSGVVSN 273 (324)
Q Consensus 205 GsG~iai~la~~~~-p~~~V~gvDis-~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~fDlIVsN 273 (324)
|+|.++..+++.+. .+.+|+.++.+ .+.++...+.+....-...+.++..|+.+.-. ...+..|++|.|
T Consensus 7 ~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 86 (251)
T PRK07069 7 AAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLVNN 86 (251)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEEEC
Confidence 46778877777652 35689999987 66555555444433222235567778765211 112568999999
Q ss_pred CCCCC
Q 020573 274 PPYIP 278 (324)
Q Consensus 274 PPYi~ 278 (324)
.-+..
T Consensus 87 ag~~~ 91 (251)
T PRK07069 87 AGVGS 91 (251)
T ss_pred CCcCC
Confidence 86654
No 438
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=59.89 E-value=24 Score=32.74 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNP 230 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~ 230 (324)
++..++|+|||.|.++..+++.+. +...++.||...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 455899999999999999999762 346899999854
No 439
>PRK08339 short chain dehydrogenase; Provisional
Probab=59.83 E-value=1.1e+02 Score=27.51 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------c--CCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D--VEG 265 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~--~~~ 265 (324)
.++++|=.|+ +|.++.++++.+- .+.+|+.++.+++.++.+.+.++... ..++.++..|..+.-. . ..+
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTAS-SKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 3456666564 4556666666542 35789999999887776666654431 2358889999876311 0 025
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
.+|++|.|.-.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 78999998643
No 440
>PRK08862 short chain dehydrogenase; Provisional
Probab=59.47 E-value=93 Score=27.64 Aligned_cols=78 Identities=14% Similarity=-0.009 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--c-------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--K-------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~-------~~~~ 265 (324)
++.++=.|+++| ++.++++.+ ..+.+|+.++.+++.++.+.+.++..+ .++..+..|..+.- . ...+
T Consensus 5 ~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457887777775 455555443 245789999999988877666665554 23667777765421 1 1114
Q ss_pred -CeeEEEEcCCC
Q 020573 266 -KLSGVVSNPPY 276 (324)
Q Consensus 266 -~fDlIVsNPPY 276 (324)
++|++|.|.-+
T Consensus 82 ~~iD~li~nag~ 93 (227)
T PRK08862 82 RAPDVLVNNWTS 93 (227)
T ss_pred CCCCEEEECCcc
Confidence 79999999743
No 441
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=59.25 E-value=92 Score=27.10 Aligned_cols=81 Identities=20% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
.+++|=.| |+|.++..+++.+. .+.+|++++.++...+.....++..+ .++.++..|+.+.-. ...+
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 34677666 48999988887652 24579999999877665554444333 358888899875311 1124
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
+.|.||.|.-+...
T Consensus 82 ~id~vi~~ag~~~~ 95 (246)
T PRK05653 82 ALDILVNNAGITRD 95 (246)
T ss_pred CCCEEEECCCcCCC
Confidence 67999998766543
No 442
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.22 E-value=46 Score=30.14 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccC
Q 020573 195 RDGFWVDLGT-GSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGc-GsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~ 263 (324)
.++.+|=-|+ |++.|+.++|+.+. .+++|+.++.+....+.+++..+..+ ....++.|..+.- ...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHH
Confidence 3457887777 57788888887662 35688887765443344443333322 2456788876531 111
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 82 ~g~iD~lVnnAG~~ 95 (261)
T PRK08690 82 WDGLDGLVHSIGFA 95 (261)
T ss_pred hCCCcEEEECCccC
Confidence 36899999997654
No 443
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=59.17 E-value=1e+02 Score=28.63 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCcc---HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccccccc----------
Q 020573 195 RDGFWVDLGTGSG---AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-QDIIEIRQGSWFGKL---------- 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG---~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl-~~rv~~~~gD~~~~l---------- 260 (324)
.++.+|-=|..+| +++..+++. +++|+.++.+++.++.+.+-....+. ..++..+..|..+.-
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~---Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKA---GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3556666665555 344444443 58999999999999888877766554 356888888886431
Q ss_pred ccCCCCeeEEEEcCCCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~ 280 (324)
....++.|++|.|.-.....
T Consensus 84 ~~~~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLT 103 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCC
Confidence 11247899999997766543
No 444
>PRK09135 pteridine reductase; Provisional
Probab=59.12 E-value=1e+02 Score=27.02 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis-~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+.++|-.| |+|.++..+++.+. .+.+|++++.+ +...+.....+...+. +.+.++.+|..+.-. ...
T Consensus 6 ~~~vlItG-a~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 6 AKVALITG-GARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45788888 46888888877652 35789999975 3333333333333221 348889999865311 012
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+..|+||.|....
T Consensus 84 ~~~d~vi~~ag~~ 96 (249)
T PRK09135 84 GRLDALVNNASSF 96 (249)
T ss_pred CCCCEEEECCCCC
Confidence 4689999997643
No 445
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=58.84 E-value=25 Score=32.20 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
.....-|+++|.|.|.++..+... .-.+...||+++..+.-.+.-.+.. +.+..++.+|...
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 334568999999999999999875 3468889999988777666555433 2357777887653
No 446
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.71 E-value=63 Score=28.63 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=48.3
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP-LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~-~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
.++=.| |+|.++..+++.+. .+.+|+.++.+. ...+...+.++..+ .++.++..|+.+.-. ...+.
T Consensus 4 ~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 4 VALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALG--VEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 466555 68888888887662 346899998653 33333334443333 358999999876311 11257
Q ss_pred eeEEEEcCCC
Q 020573 267 LSGVVSNPPY 276 (324)
Q Consensus 267 fDlIVsNPPY 276 (324)
.|+||.|.-+
T Consensus 81 id~vi~~ag~ 90 (256)
T PRK12745 81 IDCLVNNAGV 90 (256)
T ss_pred CCEEEECCcc
Confidence 8999999654
No 447
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.66 E-value=70 Score=29.65 Aligned_cols=78 Identities=14% Similarity=-0.000 Sum_probs=52.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.-. ...+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776664 667777777655 234789999999887776666555443 347888999875310 1125
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
..|++|.|.-.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 78999998654
No 448
>PRK09186 flagellin modification protein A; Provisional
Probab=58.37 E-value=72 Score=28.27 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|++++.+++.++.+.+.+....-...+.++.+|+.+.-. ...+
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 446666665 5678888777652 3468999999988776665555332112346777888875311 0124
Q ss_pred CeeEEEEcC
Q 020573 266 KLSGVVSNP 274 (324)
Q Consensus 266 ~fDlIVsNP 274 (324)
..|++|.|-
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 589999985
No 449
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=58.30 E-value=33 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 209 IAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 209 iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
|+.+|.+. ++..+|+|+|.++..++.|++
T Consensus 1 ~A~aL~~~-g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKA-GPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHT-TTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhC-CCCeEEEEEeCCHHHHHHHHH
Confidence 45666665 567899999999998877653
No 450
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.22 E-value=88 Score=27.90 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=49.7
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcccccccc
Q 020573 196 DGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261 (324)
Q Consensus 196 ~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis------------~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~ 261 (324)
++++|=.|++. |.++..+++.+. .+.+|+.++.+ ++... ..+.++..+ .++.++..|+.+.-.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--VRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--CeEEEEECCCCCHHH
Confidence 45788888664 678888877652 34689998876 33333 223333333 358899999865311
Q ss_pred ---------cCCCCeeEEEEcCCCC
Q 020573 262 ---------DVEGKLSGVVSNPPYI 277 (324)
Q Consensus 262 ---------~~~~~fDlIVsNPPYi 277 (324)
...+.+|+||.|.-+.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~ 106 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYS 106 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcC
Confidence 1125789999987554
No 451
>PRK05855 short chain dehydrogenase; Validated
Probab=57.96 E-value=74 Score=31.97 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=53.9
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
.++|=.| |+|.++..+++++. .+.+|+.++.+...++...+.++..+. ++.++..|..+.-. ...+.
T Consensus 316 ~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 316 KLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4555444 58888888887662 346899999998877766666655553 58899999876421 11357
Q ss_pred eeEEEEcCCCC
Q 020573 267 LSGVVSNPPYI 277 (324)
Q Consensus 267 fDlIVsNPPYi 277 (324)
+|++|.|--..
T Consensus 393 id~lv~~Ag~~ 403 (582)
T PRK05855 393 PDIVVNNAGIG 403 (582)
T ss_pred CcEEEECCccC
Confidence 89999997554
No 452
>PRK07775 short chain dehydrogenase; Provisional
Probab=57.82 E-value=1.1e+02 Score=27.87 Aligned_cols=78 Identities=12% Similarity=-0.095 Sum_probs=51.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+.++=.| |+|.++..+++.+- .+.+|+.++.+.........++...+ .++.++.+|..+.-. ...++
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4666666 57888988887662 34688899888776655554444433 358888999875311 01246
Q ss_pred eeEEEEcCCCC
Q 020573 267 LSGVVSNPPYI 277 (324)
Q Consensus 267 fDlIVsNPPYi 277 (324)
.|.+|.|.-+.
T Consensus 88 id~vi~~Ag~~ 98 (274)
T PRK07775 88 IEVLVSGAGDT 98 (274)
T ss_pred CCEEEECCCcC
Confidence 89999987554
No 453
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.28 E-value=54 Score=32.36 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=45.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNP-LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~-~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+++|+=+|.|. ++..+|+.+ ..+.+|+++|.+. +.+....+.+..++ ++++.+|..+.. .+.+|+||.+
T Consensus 5 ~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~---~~~~d~vv~~ 75 (450)
T PRK14106 5 GKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG----IELVLGEYPEEF---LEGVDLVVVS 75 (450)
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchhH---hhcCCEEEEC
Confidence 56788887766 555555543 2467999999985 33322222333333 567777765422 2579999998
Q ss_pred CCCCCC
Q 020573 274 PPYIPS 279 (324)
Q Consensus 274 PPYi~~ 279 (324)
+=+.+.
T Consensus 76 ~g~~~~ 81 (450)
T PRK14106 76 PGVPLD 81 (450)
T ss_pred CCCCCC
Confidence 765433
No 454
>PRK08324 short chain dehydrogenase; Validated
Probab=57.12 E-value=75 Score=33.54 Aligned_cols=81 Identities=22% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.|+ +|.++..+++.+. .+.+|+.+|.++..++.+...+... .++.++..|..+.-. ...
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3456665554 5677777776542 3568999999998776655444322 358888998865311 012
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
+.+|+||.|--+...
T Consensus 497 g~iDvvI~~AG~~~~ 511 (681)
T PRK08324 497 GGVDIVVSNAGIAIS 511 (681)
T ss_pred CCCCEEEECCCCCCC
Confidence 578999999765543
No 455
>PRK09291 short chain dehydrogenase; Provisional
Probab=57.06 E-value=1.1e+02 Score=27.18 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=50.7
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---cCCCCeeEEEEc
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVSN 273 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---~~~~~fDlIVsN 273 (324)
++|=.|+ +|.++..+++.+. .+.+|++++.++...+..+......+. ++.++.+|+.+... ...+..|+||.|
T Consensus 4 ~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 4 TILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 5666665 6777877776552 357899999987766555554444443 48888999876321 123479999998
Q ss_pred CCCC
Q 020573 274 PPYI 277 (324)
Q Consensus 274 PPYi 277 (324)
--+.
T Consensus 81 ag~~ 84 (257)
T PRK09291 81 AGIG 84 (257)
T ss_pred CCcC
Confidence 6543
No 456
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=56.75 E-value=33 Score=30.72 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIAR---VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~---~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
++..|++.|+--|.-++..|. .++...+|+++|++-..++-+... ..+|.|++|+-.++
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dp 130 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDP 130 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCH
Confidence 356899999998888877765 345557999999987665433221 24588888887654
No 457
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.69 E-value=41 Score=30.76 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccccccc----------cc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KD 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~a-l~~Ar~N~~~~gl~~rv~~~~gD~~~~l----------~~ 262 (324)
.++.||=-||.+|.|+-++|++|.. +.+|+++-.+-+- -+++. ..| +....-|..++- ..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~----~~g----l~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI----QFG----LKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH----hhC----CeeEEeccCChHHHHHHHHHHhhC
Confidence 3568999999999999999998733 4688888766443 23322 223 444444543321 12
Q ss_pred CCCCeeEEEEcC
Q 020573 263 VEGKLSGVVSNP 274 (324)
Q Consensus 263 ~~~~fDlIVsNP 274 (324)
..|+.|+.+-|-
T Consensus 78 ~~Gkld~L~NNA 89 (289)
T KOG1209|consen 78 PDGKLDLLYNNA 89 (289)
T ss_pred CCCceEEEEcCC
Confidence 358999999884
No 458
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=56.56 E-value=25 Score=33.38 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 194 ~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.++.+||=+|+| .|.+++.+++......+|+++|.+++-++.|++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 356789999876 334445556642234689999999988888764
No 459
>PRK08264 short chain dehydrogenase; Validated
Probab=56.39 E-value=62 Score=28.39 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=47.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-----cCCCCee
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLS 268 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~-~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-----~~~~~fD 268 (324)
+++++=.| |+|.++..+++.+. .+. +|+.++.+++.+.. ...++.++.+|+.+.-. ...+..|
T Consensus 6 ~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 45677777 68888888887653 244 89999988765432 22458899999876321 0123689
Q ss_pred EEEEcCCC
Q 020573 269 GVVSNPPY 276 (324)
Q Consensus 269 lIVsNPPY 276 (324)
+||.|.-.
T Consensus 76 ~vi~~ag~ 83 (238)
T PRK08264 76 ILVNNAGI 83 (238)
T ss_pred EEEECCCc
Confidence 99998755
No 460
>PRK07791 short chain dehydrogenase; Provisional
Probab=56.18 E-value=1e+02 Score=28.34 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCH---------HHHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP---------LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---- 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~---------~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---- 260 (324)
.++++|-.|+ ++.|+..+++.+. .+.+|+.+|.+. +.++.+.+.++..+ .++.++..|..+.-
T Consensus 5 ~~k~~lITGa-s~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGA-GGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHH
Confidence 3456777775 4566666666542 356888888764 44444444444333 34778888886521
Q ss_pred -----ccCCCCeeEEEEcCCCCC
Q 020573 261 -----KDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 261 -----~~~~~~fDlIVsNPPYi~ 278 (324)
....++.|++|.|.-+..
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCC
Confidence 111267999999976543
No 461
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.18 E-value=92 Score=27.64 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|-.|+ +|.++..+++.+ ..+.+|++++.+++..+...+... +. ++.++.+|+.+.-. ...
T Consensus 10 ~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 10 DGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4568887776 577777777664 235689999998876654433322 11 47888999875321 012
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|+||.|-.+.
T Consensus 85 ~~~d~vi~~ag~~ 97 (264)
T PRK12829 85 GGLDVLVNNAGIA 97 (264)
T ss_pred CCCCEEEECCCCC
Confidence 4789999987665
No 462
>PRK08226 short chain dehydrogenase; Provisional
Probab=56.17 E-value=1.1e+02 Score=27.18 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.|+ +|.++..+++.+- .+.+|+.++.+....+.+++. ...+ .++.++..|+.+... ...+
T Consensus 6 ~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456776665 6777777777652 357899999987654444332 2222 357888999875311 1125
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
+.|++|.|.-+...
T Consensus 82 ~id~vi~~ag~~~~ 95 (263)
T PRK08226 82 RIDILVNNAGVCRL 95 (263)
T ss_pred CCCEEEECCCcCCC
Confidence 78999999876543
No 463
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=56.11 E-value=85 Score=28.38 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.|. +|.++..+++.+ ..+.+|+.++.+++..+...+.++..+ .++.+++.|+.+.-. ...
T Consensus 9 ~~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 9 KGKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456665554 566777777655 235689999999877665555554433 358889999875311 112
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+++|++|.|..+
T Consensus 86 g~id~li~~ag~ 97 (278)
T PRK08277 86 GPCDILINGAGG 97 (278)
T ss_pred CCCCEEEECCCC
Confidence 578999999764
No 464
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.41 E-value=31 Score=33.24 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=53.5
Q ss_pred hcCCCceeEEecccccCeeeeeeCCccccc----chHH-HHHH----H-HHHHhhhcCCCCCCCeEEEEcCCccHHHHHH
Q 020573 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPR----PETE-LMVD----L-VSDVLVRDNDGLRDGFWVDLGTGSGAIAIGI 213 (324)
Q Consensus 144 ~~~~pl~yi~g~~~f~~l~~~v~~~vliPr----p~te-~lve----~-l~~~l~~~~~~~~~~~VLDLGcGsG~iai~l 213 (324)
.+++|+.+++|...|..+..- +...+.+- |-.. .|+- . .-..+ ...+..++..+.-+|+|.=.+++..
T Consensus 133 ~~gk~iyHfmg~StFsEYTVv-~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~-~~Akv~~GstvAVfGLG~VGLav~~ 210 (375)
T KOG0022|consen 133 CKGKPIYHFMGTSTFSEYTVV-DDISVAKIDPSAPLEKVCLLGCGVSTGYGAAW-NTAKVEPGSTVAVFGLGGVGLAVAM 210 (375)
T ss_pred eCCCceEEecccccceeEEEe-ecceeEecCCCCChhheeEeeccccccchhhh-hhcccCCCCEEEEEecchHHHHHHH
Confidence 347888888988778666542 22222211 1100 0000 0 00000 1123345778999999876666555
Q ss_pred HHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 214 ARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 214 a~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..+....++++|||++++-.+.|++
T Consensus 211 Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 211 GAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hHHhcCcccEEEEecCHHHHHHHHh
Confidence 4333467899999999999998875
No 465
>PRK05872 short chain dehydrogenase; Provisional
Probab=55.41 E-value=92 Score=28.77 Aligned_cols=80 Identities=21% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|-.| |+|.++..+++.+. .+.+|+.++.+++.++...+.+ +-..++..+..|+.+.-. ...
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 455677655 56677777776652 3578999999987665544333 222346666788765311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|.-+..
T Consensus 84 g~id~vI~nAG~~~ 97 (296)
T PRK05872 84 GGIDVVVANAGIAS 97 (296)
T ss_pred CCCCEEEECCCcCC
Confidence 57999999987644
No 466
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.36 E-value=64 Score=29.49 Aligned_cols=80 Identities=18% Similarity=0.036 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++.+|-.|.++ +.|+.++|+.+. .+++|+.++.+....+..++..+..+. ..+++.|+.+.-. ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 356788888776 366766666552 357898888875443333333333331 3467788865311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-..
T Consensus 83 ~g~iD~lVnnAG~~ 96 (271)
T PRK06505 83 WGKLDFVVHAIGFS 96 (271)
T ss_pred hCCCCEEEECCccC
Confidence 36899999997543
No 467
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.13 E-value=9 Score=37.71 Aligned_cols=34 Identities=35% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHh--------------CCCcEEEEEeCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL--------------GSKGSIIAVDLN 229 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~--------------~p~~~V~gvDis 229 (324)
..+|+|+|||+|..++.+.... .|.-+|+.-|+-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 4589999999998876664322 134567777754
No 468
>PRK08278 short chain dehydrogenase; Provisional
Probab=54.61 E-value=95 Score=28.21 Aligned_cols=80 Identities=18% Similarity=0.071 Sum_probs=49.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHH-------HHHHHHHHHHcCCCCcEEEEEcccccccc------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLA-------AAVAAFNAQRYGLQDIIEIRQGSWFGKLK------ 261 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~a-------l~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------ 261 (324)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+... ++...+.+...+ .++.++.+|+.+.-.
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 6 GKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence 456776665 6777877777652 35689999987542 222223333333 358888999865321
Q ss_pred ---cCCCCeeEEEEcCCCCC
Q 020573 262 ---DVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 262 ---~~~~~fDlIVsNPPYi~ 278 (324)
...+++|++|.|..+..
T Consensus 83 ~~~~~~g~id~li~~ag~~~ 102 (273)
T PRK08278 83 KAVERFGGIDICVNNASAIN 102 (273)
T ss_pred HHHHHhCCCCEEEECCCCcC
Confidence 01247999999976643
No 469
>PRK09072 short chain dehydrogenase; Provisional
Probab=54.18 E-value=1.1e+02 Score=27.47 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cC--CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV--EGK 266 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~--~~~ 266 (324)
+.++|=.|+ +|.++..+++.+ ..+.+|++++.+++.++....-+ .. ..++.++..|..+.-. .. .+.
T Consensus 5 ~~~vlItG~-s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGA-SGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 345666654 466777666654 23578999999987766554433 22 3468899999866321 00 256
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
.|++|.|-.+..
T Consensus 81 id~lv~~ag~~~ 92 (263)
T PRK09072 81 INVLINNAGVNH 92 (263)
T ss_pred CCEEEECCCCCC
Confidence 899999976543
No 470
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=53.82 E-value=1.3e+02 Score=26.46 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVD-LNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvD-is~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++-.| |+|.++..+++++- .+.+|+.+. .+++..+.....+...+ .++.++..|+.+.-. ...
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45788888 68899998888652 246777654 34454443333333333 358899999875311 012
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+..|+||.|..+..
T Consensus 83 ~~id~vi~~ag~~~ 96 (247)
T PRK12935 83 GKVDILVNNAGITR 96 (247)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999987654
No 471
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=53.79 E-value=1.1e+02 Score=27.40 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|-.| |+|.|+..+++++ ..+.+|+.++.+.. +.+.+.++..+ .++.++..|+.+.-. ...
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITG-CNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 356788777 4667777777654 23578988887642 22233333333 358888999865311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|.-+..
T Consensus 82 g~iD~lv~~ag~~~ 95 (251)
T PRK12481 82 GHIDILINNAGIIR 95 (251)
T ss_pred CCCCEEEECCCcCC
Confidence 57999999976543
No 472
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=53.34 E-value=76 Score=29.65 Aligned_cols=78 Identities=19% Similarity=0.070 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.|+..+++.+. .+.+|+.++.+.+..+.+.+.+... ..++.++..|+.+.-. ...+
T Consensus 6 ~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 6 KGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 44666666 56778888777652 3468999999887665554444321 2358888999865311 1124
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
+.|++|.|.-.
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 68999999654
No 473
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.06 E-value=1.1e+02 Score=27.11 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++=.| |+|.++..+++.+- .+.+|+.++.++..++.+...+...+ .++.++..|+.+.-. ...+
T Consensus 5 ~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 57777777776552 35699999999877666655554443 358889999865311 0125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|+||.|.-+.
T Consensus 82 ~~d~vi~~ag~~ 93 (258)
T PRK07890 82 RVDALVNNAFRV 93 (258)
T ss_pred CccEEEECCccC
Confidence 789999997543
No 474
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=52.68 E-value=49 Score=32.29 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHH--HHHHHHHcCCCCcEEEEEccccccc--cc-CCC---
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAV--AAFNAQRYGLQDIIEIRQGSWFGKL--KD-VEG--- 265 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~--Ar~N~~~~gl~~rv~~~~gD~~~~l--~~-~~~--- 265 (324)
.+.+||=.| |+|.++..+++.+ ..+.+|++++.+...... ........ ..+++++.+|+.+.- .. ..+
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 355788777 7999999888765 234689999987653321 01111111 135899999987642 11 112
Q ss_pred CeeEEEEc
Q 020573 266 KLSGVVSN 273 (324)
Q Consensus 266 ~fDlIVsN 273 (324)
.+|+||.+
T Consensus 136 ~~D~Vi~~ 143 (390)
T PLN02657 136 PVDVVVSC 143 (390)
T ss_pred CCcEEEEC
Confidence 68999975
No 475
>PRK06482 short chain dehydrogenase; Provisional
Probab=52.58 E-value=1.1e+02 Score=27.60 Aligned_cols=74 Identities=22% Similarity=0.149 Sum_probs=48.7
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~f 267 (324)
++|=.| |+|.++..+++++. .+.+|++++.+++.++..+... ..++.++.+|+.+.-. ...++.
T Consensus 4 ~vlVtG-asg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 4 TWFITG-ASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred EEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 466444 47888888887652 3468999999987665443321 2358899999876311 012468
Q ss_pred eEEEEcCCCC
Q 020573 268 SGVVSNPPYI 277 (324)
Q Consensus 268 DlIVsNPPYi 277 (324)
|+||.|.-+.
T Consensus 78 d~vi~~ag~~ 87 (276)
T PRK06482 78 DVVVSNAGYG 87 (276)
T ss_pred CEEEECCCCC
Confidence 9999987654
No 476
>PRK07041 short chain dehydrogenase; Provisional
Probab=52.40 E-value=92 Score=27.09 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=46.6
Q ss_pred CccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-----cCCCCeeEEEEcCCCC
Q 020573 205 GSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLSGVVSNPPYI 277 (324)
Q Consensus 205 GsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-----~~~~~fDlIVsNPPYi 277 (324)
|+|.++..+++.+ ..+.+|++++.+++.++.....++. ..+++++..|+.+... ...+++|.+|.|..+.
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~ 80 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT 80 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 6788888887765 2356899999998766554444331 2358888999875311 1125689999997654
No 477
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=52.38 E-value=15 Score=34.49 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=24.8
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
+++.++|+.+.+......=|+|.++|||.+..
T Consensus 157 ~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s 188 (274)
T COG0338 157 ATIENGDFEEVLADADSGDDFVYCDPPYLPLS 188 (274)
T ss_pred CeEEcCCHHHHHhhccCCCcEEEeCCCCCccc
Confidence 89999999886654333348999999999854
No 478
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.38 E-value=1.4e+02 Score=26.67 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCC-----------HHHHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLN-----------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL- 260 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis-----------~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l- 260 (324)
.++++|=.|++. +.++..+++++. .+.+|+.++.+ ........+.++..+ .++.++..|+.+.-
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--VKVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHH
Confidence 456788888763 577777776552 24577776532 222223334445444 35888888876421
Q ss_pred --------ccCCCCeeEEEEcCCCCC
Q 020573 261 --------KDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 261 --------~~~~~~fDlIVsNPPYi~ 278 (324)
....+..|++|.|.-+..
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCC
Confidence 111256899999986643
No 479
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=52.36 E-value=60 Score=30.56 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++....|+|.-.|..+-.|.++ +-.|++||.-+-+ +++-..| +|+-...|-|+.-+. ..+.|..||+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~P~-r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFRPT-RSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhccc---ceeeeeccCcccccC-CCCCceEEee
Confidence 35678999999999999999886 4799999987533 2333333 588888998876542 4689999996
No 480
>PRK06720 hypothetical protein; Provisional
Probab=52.24 E-value=98 Score=26.44 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=49.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--c-------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--K-------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~-------~~~~ 265 (324)
++.++-.|.+ |.++..++..+. .+.+|+.+|.+.+.++.+.+.+...+ .++.++..|..+.- . ...+
T Consensus 16 gk~~lVTGa~-~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 16 GKVAIVTGGG-IGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCEEEEecCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4456655554 456666665441 35789999999887766555555443 24677788875421 1 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|-.+.
T Consensus 93 ~iDilVnnAG~~ 104 (169)
T PRK06720 93 RIDMLFQNAGLY 104 (169)
T ss_pred CCCEEEECCCcC
Confidence 789999996643
No 481
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=51.85 E-value=33 Score=34.47 Aligned_cols=72 Identities=25% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+++|+=+|-| ||.-+..+..+ .++.|+..|.++........-. ....+.+..|.... .....+|+||-||
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~--~G~~v~v~D~~~~~~~~~~~~~----~~~~i~~~~g~~~~---~~~~~~d~vV~SP 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK--LGAEVTVSDDRPAPEGLAAQPL----LLEGIEVELGSHDD---EDLAEFDLVVKSP 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH--CCCeEEEEcCCCCccchhhhhh----hccCceeecCccch---hccccCCEEEECC
Confidence 5689999988 55444444444 3589999999887732222211 12347777776544 1125799999998
Q ss_pred CC
Q 020573 275 PY 276 (324)
Q Consensus 275 PY 276 (324)
-.
T Consensus 78 Gi 79 (448)
T COG0771 78 GI 79 (448)
T ss_pred CC
Confidence 43
No 482
>PRK08589 short chain dehydrogenase; Validated
Probab=51.76 E-value=1.2e+02 Score=27.41 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=48.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+ +.++...+.++..+ .++.++..|+.+.-. ...+
T Consensus 6 ~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 456665554 5566777776552 35799999998 44444444444333 358888888865311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
+.|++|.|.-+.
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 789999998664
No 483
>PRK06398 aldose dehydrogenase; Validated
Probab=51.30 E-value=52 Score=29.63 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.++... .++.++..|..+... ...
T Consensus 5 ~gk~vlItG-as~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~~ 70 (258)
T PRK06398 5 KDKVAIVTG-GSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISKY 70 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777777 56777777777652 346899998875321 147888888865311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+.+|++|.|.-+.
T Consensus 71 ~~id~li~~Ag~~ 83 (258)
T PRK06398 71 GRIDILVNNAGIE 83 (258)
T ss_pred CCCCEEEECCCCC
Confidence 5799999986553
No 484
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=51.27 E-value=37 Score=32.44 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
.+.+|+-+|+|--.+...+++. | ++|.+||+++..++.-+-.+..
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 3568999999966677777764 4 7999999999988877766654
No 485
>PRK06057 short chain dehydrogenase; Provisional
Probab=50.71 E-value=56 Score=29.15 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|-.|+ +|.++..+++.+. .+.+|+++|.++..++...+.+ + ..+++.|..+.-. ...
T Consensus 6 ~~~~vlItGa-sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGG-GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---G----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---C----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4567887776 5677888777652 3578999999876554433322 1 2456667654211 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|+||.|.-+.
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 4789999997664
No 486
>PRK08303 short chain dehydrogenase; Provisional
Probab=50.71 E-value=1e+02 Score=28.91 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCH----------HHHHHHHHHHHHcCCCCcEEEEEcccccccc--
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP----------LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~----------~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-- 261 (324)
.++.+|-.|++ +.|+.++++.+. .+++|+.++.+. +.++.+.+.+...+ .++.+++.|..+.-.
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHH
Confidence 45678877855 457777777652 357899988873 33443333444333 347788889875311
Q ss_pred -------cCCCCeeEEEEcC
Q 020573 262 -------DVEGKLSGVVSNP 274 (324)
Q Consensus 262 -------~~~~~fDlIVsNP 274 (324)
...++.|++|.|.
T Consensus 84 ~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 1125799999997
No 487
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=50.32 E-value=97 Score=25.30 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p--~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.+.+++-+|+| .++..+++.+.. ..+|+.+|.+++..+...+...... +.....|..+. .+..|+||+
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL----LAEADLIIN 87 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc----cccCCEEEe
Confidence 45789999885 566666554422 3579999999876654443332111 11112232221 246899888
Q ss_pred cCCC
Q 020573 273 NPPY 276 (324)
Q Consensus 273 NPPY 276 (324)
.=|.
T Consensus 88 ~~~~ 91 (155)
T cd01065 88 TTPV 91 (155)
T ss_pred CcCC
Confidence 7554
No 488
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=49.99 E-value=2.3e+02 Score=28.16 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCccHHHHH--HHHHhCCCcEEEEEeCCHHHHH------------HHHHHHHHcCCCCcEEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIG--IARVLGSKGSIIAVDLNPLAAA------------VAAFNAQRYGLQDIIEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~--la~~~~p~~~V~gvDis~~al~------------~Ar~N~~~~gl~~rv~~~~gD~~~~l 260 (324)
.++++|=.|..+|. +++ +|+.+..++.|++++...+..+ ...+.++..|. .+..+.+|.++.-
T Consensus 40 ggK~aLVTGaSsGI-GlA~~IA~al~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~--~a~~i~~DVss~E 116 (398)
T PRK13656 40 GPKKVLVIGASSGY-GLASRIAAAFGAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGL--YAKSINGDAFSDE 116 (398)
T ss_pred CCCEEEEECCCchH-hHHHHHHHHHHcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCC--ceEEEEcCCCCHH
Confidence 35688888887764 333 5665545678888885432211 22333444443 3677889987631
Q ss_pred ---------ccCCCCeeEEEEcCCCCCC
Q 020573 261 ---------KDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 261 ---------~~~~~~fDlIVsNPPYi~~ 279 (324)
....+++|++|.|--|-+.
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r 144 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASPRR 144 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCC
Confidence 1123689999999776644
No 489
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.71 E-value=75 Score=32.07 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=42.8
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+++|+=+|.| +|.-++.+++. .+.+|++.|..+..++. ++..| +.+..++... ..+ ..+|+||-.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~--~G~~v~~~D~~~~~~~~----l~~~g----~~~~~~~~~~--~~l-~~~D~VV~S 77 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTR--FGARPTVCDDDPDALRP----HAERG----VATVSTSDAV--QQI-ADYALVVTS 77 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHH----HHhCC----CEEEcCcchH--hHh-hcCCEEEEC
Confidence 45689999988 45444544554 35799999987664332 33334 4555444321 111 358999999
Q ss_pred CCCCC
Q 020573 274 PPYIP 278 (324)
Q Consensus 274 PPYi~ 278 (324)
|..-+
T Consensus 78 pGi~~ 82 (488)
T PRK03369 78 PGFRP 82 (488)
T ss_pred CCCCC
Confidence 86543
No 490
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=49.58 E-value=71 Score=30.30 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlIV 271 (324)
.+.+||=.| |+|.++..+++.+- .+.+|++++.++........... . ..+++++.+|+.+.. ...-..+|.||
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--E-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--c-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 456788766 58999999988762 34689998887643322221111 1 245899999987632 11123589988
Q ss_pred EcCCCC
Q 020573 272 SNPPYI 277 (324)
Q Consensus 272 sNPPYi 277 (324)
-+....
T Consensus 85 h~A~~~ 90 (353)
T PLN02896 85 HVAASM 90 (353)
T ss_pred ECCccc
Confidence 876543
No 491
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=49.53 E-value=42 Score=31.28 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=45.4
Q ss_pred EcCCccHHHHHHHHHhCCC---cEEEEEeCCHH---HHHHHHHHHHHcCCC------CcEEEEEccccccc--------c
Q 020573 202 LGTGSGAIAIGIARVLGSK---GSIIAVDLNPL---AAAVAAFNAQRYGLQ------DIIEIRQGSWFGKL--------K 261 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~---~~V~gvDis~~---al~~Ar~N~~~~gl~------~rv~~~~gD~~~~l--------~ 261 (324)
+-.|||.++..+++.+-.. .+|+++..+.. +.+..+++....++. .+++++.+|..++. .
T Consensus 4 vtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~~~~ 83 (367)
T TIGR01746 4 LTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDAEWE 83 (367)
T ss_pred EeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHHHHH
Confidence 3456899999998876322 57999887644 333344444444331 46999999976531 1
Q ss_pred cCCCCeeEEEEcC
Q 020573 262 DVEGKLSGVVSNP 274 (324)
Q Consensus 262 ~~~~~fDlIVsNP 274 (324)
.....+|+||.|-
T Consensus 84 ~~~~~~d~vih~a 96 (367)
T TIGR01746 84 RLAENVDTIVHNG 96 (367)
T ss_pred HHHhhCCEEEeCC
Confidence 1124689988763
No 492
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=49.41 E-value=63 Score=31.14 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHHcCCCCcEEE
Q 020573 195 RDGFWVDLGTGS-GA-IAIGIARVLGSKGSIIAVDLNP---------------------LAAAVAAFNAQRYGLQDIIEI 251 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~-iai~la~~~~p~~~V~gvDis~---------------------~al~~Ar~N~~~~gl~~rv~~ 251 (324)
...+|+=+|||. |+ ++..|++. .-++++-+|-+. .-++.|++.+++.+..-+++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 356899999983 33 33334442 335889899874 123445556665544434666
Q ss_pred EEccccc-ccccCCCCeeEEEE
Q 020573 252 RQGSWFG-KLKDVEGKLSGVVS 272 (324)
Q Consensus 252 ~~gD~~~-~l~~~~~~fDlIVs 272 (324)
+..+... .+...-..+|+||.
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEE
Confidence 6666531 12222246787776
No 493
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=49.36 E-value=55 Score=28.90 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCCeEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEE
Q 020573 195 RDGFWVDLGTGS-GA-IAIGIARVLGSKGSIIAVDLNP-------------------LAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~-iai~la~~~~p~~~V~gvDis~-------------------~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
...+|+=+|||. |+ ++..|+.. .-.+++.+|.+. .-.+.+.+.++..+..-+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 356899999983 44 34444443 336899999772 22334444555443322344444
Q ss_pred cccccc-cccCCCCeeEEEE
Q 020573 254 GSWFGK-LKDVEGKLSGVVS 272 (324)
Q Consensus 254 gD~~~~-l~~~~~~fDlIVs 272 (324)
..+.+. +...-..+|+||.
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~ 117 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLD 117 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEE
Confidence 443221 1111246888886
No 494
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=49.26 E-value=12 Score=32.73 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=17.9
Q ss_pred CccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHH
Q 020573 205 GSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 205 GsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar 237 (324)
|.|++++.+|..+. .+.+|+|+|++++-++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 45555544443331 2469999999998776544
No 495
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.22 E-value=55 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=30.5
Q ss_pred CeEEEEcC--CccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 020573 197 GFWVDLGT--GSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 197 ~~VLDLGc--GsG~iai~la~~~~p~~-~V~gvDis~~al~~Ar~ 238 (324)
.+||=.|. |.|..++.+|+.. +. +|++++.+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence 67877775 5778888899985 45 79999999876666554
No 496
>PRK07825 short chain dehydrogenase; Provisional
Probab=48.92 E-value=1.4e+02 Score=26.91 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=48.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~ 265 (324)
++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+. ++.++..|+.+.- ....+
T Consensus 5 ~~~ilVtGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGG-ARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 446776665 566777777654 235789999999877654433321 3778888887531 11125
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
..|++|.|.-+..
T Consensus 78 ~id~li~~ag~~~ 90 (273)
T PRK07825 78 PIDVLVNNAGVMP 90 (273)
T ss_pred CCCEEEECCCcCC
Confidence 7899999976543
No 497
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=48.70 E-value=1.6e+02 Score=31.09 Aligned_cols=82 Identities=21% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+++|.+.+.++...+.+....-.+++.+++.|+.+.-. ...
T Consensus 413 ~gkvvLVTG-asggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTG-GAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 345666555 56778888877652 3579999999988776555444322112347788899875311 012
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+.+|++|.|.-+.
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 5789999997654
No 498
>PRK07074 short chain dehydrogenase; Provisional
Probab=47.97 E-value=1.3e+02 Score=26.65 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=47.6
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------c---CCCCe
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D---VEGKL 267 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~---~~~~f 267 (324)
++|=.|+ +|.++..+++.+. .+.+|++++.++...+...+.+. ..++.++..|+.+.-. . ..+++
T Consensus 4 ~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 4 TALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred EEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4555554 5567888777652 34689999998876554433331 2358888999876321 0 01468
Q ss_pred eEEEEcCCCC
Q 020573 268 SGVVSNPPYI 277 (324)
Q Consensus 268 DlIVsNPPYi 277 (324)
|+||.|.-..
T Consensus 79 d~vi~~ag~~ 88 (257)
T PRK07074 79 DVLVANAGAA 88 (257)
T ss_pred CEEEECCCCC
Confidence 9999997554
No 499
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=47.83 E-value=56 Score=32.16 Aligned_cols=45 Identities=27% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
.++.+||-|.+ .|+.++.+... +| .+|++||+|+..+.+.+-.+.
T Consensus 34 ~~~d~vl~ItS-aG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITS-AGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEcc-CCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 35668888864 56666666554 34 799999999988877765554
No 500
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=47.61 E-value=48 Score=31.62 Aligned_cols=73 Identities=18% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCCCeEEEEc--CCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC--CCeeE
Q 020573 194 LRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE--GKLSG 269 (324)
Q Consensus 194 ~~~~~VLDLG--cGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~--~~fDl 269 (324)
..+.+||=.| .|.|.+++.+|+.+ +..++++-.+++-.+.++ .+|-+.-+.+...||.+....+. ..+|+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 3467888888 34678999999986 236777777765555444 44543334555666666544332 25999
Q ss_pred EEE
Q 020573 270 VVS 272 (324)
Q Consensus 270 IVs 272 (324)
|+-
T Consensus 215 v~D 217 (326)
T COG0604 215 VLD 217 (326)
T ss_pred EEE
Confidence 886
Done!