Query 020578
Match_columns 324
No_of_seqs 146 out of 1108
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.6 3.3E-15 7.2E-20 111.1 8.2 67 30-105 1-68 (68)
2 cd00060 FHA Forkhead associate 99.5 1.6E-13 3.6E-18 106.5 13.1 88 19-113 12-100 (102)
3 KOG2293 Daxx-interacting prote 99.5 1.6E-14 3.5E-19 146.4 8.5 104 12-117 432-535 (547)
4 TIGR03354 VI_FHA type VI secre 99.4 1.9E-12 4.2E-17 128.4 10.8 89 19-115 15-105 (396)
5 COG1716 FOG: FHA domain [Signa 99.2 1.6E-10 3.4E-15 100.5 11.7 83 23-117 84-168 (191)
6 PLN02927 antheraxanthin epoxid 99.2 6.8E-11 1.5E-15 124.3 8.7 87 22-115 548-646 (668)
7 COG3456 Predicted component of 99.0 6.1E-10 1.3E-14 111.3 9.1 89 20-115 18-106 (430)
8 smart00240 FHA Forkhead associ 99.0 1.1E-09 2.5E-14 77.0 5.4 51 30-87 1-52 (52)
9 KOG0245 Kinesin-like protein [ 97.9 4.1E-05 8.8E-10 83.9 9.0 89 22-117 471-560 (1221)
10 COG5025 Transcription factor o 97.9 6.3E-06 1.4E-10 86.5 2.5 109 9-120 70-195 (610)
11 KOG1881 Anion exchanger adapto 97.7 1.9E-05 4.1E-10 83.9 3.5 83 27-117 176-268 (793)
12 KOG1882 Transcriptional regula 97.7 5E-05 1.1E-09 72.4 5.9 73 27-106 193-277 (293)
13 KOG1880 Nuclear inhibitor of p 96.9 0.0019 4.2E-08 63.2 6.2 87 23-116 33-120 (337)
14 TIGR01663 PNK-3'Pase polynucle 96.5 0.0052 1.1E-07 64.0 6.5 79 18-106 22-100 (526)
15 TIGR02500 type_III_yscD type I 96.4 0.026 5.7E-07 56.5 10.8 92 14-118 4-100 (410)
16 KOG0615 Serine/threonine prote 96.4 0.0067 1.5E-07 62.0 6.2 81 23-107 59-148 (475)
17 KOG1892 Actin filament-binding 93.7 0.11 2.4E-06 57.8 5.9 88 21-118 371-460 (1629)
18 KOG0241 Kinesin-like protein [ 88.4 0.85 1.8E-05 51.3 5.9 84 22-117 462-546 (1714)
19 PF12872 OST-HTH: OST-HTH/LOTU 77.0 19 0.00041 26.8 7.6 66 228-311 5-70 (74)
20 PRK11507 ribosome-associated p 70.4 10 0.00022 30.1 4.8 32 78-111 37-68 (70)
21 PF13275 S4_2: S4 domain; PDB: 69.9 3.6 7.7E-05 32.0 2.1 32 78-111 33-64 (65)
22 KOG2294 Transcription factor o 68.6 8.2 0.00018 38.3 4.9 93 21-113 60-162 (454)
23 COG2501 S4-like RNA binding pr 68.3 11 0.00025 30.1 4.7 33 78-112 37-69 (73)
24 PF04710 Pellino: Pellino; In 64.6 16 0.00035 37.7 6.1 21 95-115 235-255 (416)
25 PRK01777 hypothetical protein; 61.9 9.4 0.0002 31.5 3.3 28 74-104 46-73 (95)
26 smart00363 S4 S4 RNA-binding d 61.4 13 0.00029 25.1 3.5 26 78-106 26-52 (60)
27 TIGR02988 YaaA_near_RecF S4 do 57.2 15 0.00033 26.9 3.4 25 78-104 34-58 (59)
28 PF14478 DUF4430: Domain of un 56.8 12 0.00026 28.3 2.9 25 80-104 43-67 (68)
29 COG5131 URM1 Ubiquitin-like pr 51.9 12 0.00026 31.3 2.3 44 61-105 42-90 (96)
30 PF01479 S4: S4 domain; Inter 49.6 17 0.00037 25.2 2.5 23 78-102 26-48 (48)
31 cd00165 S4 S4/Hsp/ tRNA synthe 47.7 27 0.00058 24.2 3.4 27 77-106 25-52 (70)
32 PRK15367 type III secretion sy 42.8 1E+02 0.0023 31.8 7.8 77 21-113 17-93 (395)
33 cd00754 MoaD Ubiquitin domain 39.2 36 0.00079 25.5 3.1 23 79-104 51-73 (80)
34 KOG3842 Adaptor protein Pellin 37.3 42 0.0009 34.1 3.9 24 94-117 247-270 (429)
35 PF09269 DUF1967: Domain of un 36.8 30 0.00065 26.7 2.3 16 96-111 54-69 (69)
36 PF02824 TGS: TGS domain; Int 36.6 34 0.00074 25.4 2.5 23 79-104 36-58 (60)
37 PF14451 Ub-Mut7C: Mut7-C ubiq 35.6 44 0.00094 26.8 3.1 24 79-105 51-74 (81)
38 TIGR01687 moaD_arch MoaD famil 35.1 47 0.001 25.8 3.2 25 79-104 57-81 (88)
39 PRK06944 sulfur carrier protei 31.6 56 0.0012 23.9 3.0 25 80-104 33-58 (65)
40 cd00565 ThiS ThiaminS ubiquiti 31.0 52 0.0011 24.4 2.8 25 80-104 33-58 (65)
41 TIGR03595 Obg_CgtA_exten Obg f 30.9 40 0.00088 26.1 2.2 16 96-111 54-69 (69)
42 TIGR01683 thiS thiamine biosyn 30.8 61 0.0013 24.0 3.1 25 80-104 32-57 (64)
43 PRK06437 hypothetical protein; 30.2 68 0.0015 24.4 3.3 22 80-104 39-60 (67)
44 PF02597 ThiS: ThiS family; I 28.0 42 0.00091 24.9 1.8 26 79-104 45-70 (77)
45 KOG1098 Putative SAM-dependent 27.8 19 0.00041 39.4 -0.1 38 213-250 24-62 (780)
46 cd01764 Urm1 Urm1-like ubuitin 27.8 57 0.0012 26.6 2.7 24 80-104 62-87 (94)
47 TIGR01682 moaD molybdopterin c 24.1 90 0.0019 23.9 3.0 22 80-104 52-73 (80)
48 PRK05659 sulfur carrier protei 23.9 74 0.0016 23.4 2.5 25 80-104 34-59 (66)
49 PRK06488 sulfur carrier protei 23.5 77 0.0017 23.5 2.5 25 80-104 33-58 (65)
50 PRK07696 sulfur carrier protei 22.2 96 0.0021 23.5 2.8 25 80-104 35-60 (67)
51 cd01666 TGS_DRG_C TGS_DRG_C: 21.9 79 0.0017 25.0 2.4 21 81-104 53-73 (75)
52 PRK07440 hypothetical protein; 21.7 97 0.0021 23.8 2.8 25 80-104 38-63 (70)
53 PLN02799 Molybdopterin synthas 21.4 1.1E+02 0.0024 23.5 3.1 22 80-104 54-75 (82)
54 PRK05863 sulfur carrier protei 21.0 60 0.0013 24.4 1.5 25 80-104 34-58 (65)
55 PHA02650 hypothetical protein; 20.9 70 0.0015 26.2 1.9 46 249-294 1-55 (81)
56 PRK08364 sulfur carrier protei 20.7 1.2E+02 0.0026 23.1 3.1 22 80-104 42-63 (70)
57 PRK13259 regulatory protein Sp 20.6 1.2E+02 0.0025 25.5 3.2 23 58-83 20-46 (94)
58 COG2028 Uncharacterized conser 20.3 21 0.00046 31.5 -1.3 46 255-300 69-118 (145)
59 PF13325 MCRS_N: N-terminal re 20.2 56 0.0012 30.6 1.4 46 221-275 75-120 (199)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.60 E-value=3.3e-15 Score=111.10 Aligned_cols=67 Identities=40% Similarity=0.672 Sum_probs=56.8
Q ss_pred EEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 020578 30 IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 30 ItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~L~~GDlIqIG 105 (324)
++|||++. +||.| +++.|||+||.|.++. ++.|+|+++ |+|||||||+++.++. +++|++||+|+||
T Consensus 1 ~~iGR~~~---~di~l----~~~~iSr~Ha~i~~~~-~~~~~i~d~~s~ngt~vng~~l~~~~-~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD---CDIVL----PDPSISRRHARISFDD-DGQFYIEDLGSTNGTFVNGQRLGPGE-PVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT---SSEEE----TSTTSSTTSEEEEEET-TEEEEEEESSSSS-EEETTEEESSTS-EEEE-TTEEEEET
T ss_pred CEEcCCCC---CCEEE----CCHheeeeeeEEEEec-eeeEEEEeCCCCCcEEECCEEcCCCC-EEECCCCCEEEcC
Confidence 58999965 67887 5789999999999985 349999997 5999999999998865 7999999999998
No 2
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.54 E-value=1.6e-13 Score=106.49 Aligned_cols=88 Identities=31% Similarity=0.548 Sum_probs=72.6
Q ss_pred CceEEEeec-CeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 020578 19 EDFEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 19 ~~~ey~L~~-~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~ 97 (324)
....|.|.. ..++|||++.+ +++.| ++..|||+||.|.++...+.|++.+.|+|||+|||+.+.++. ++.|.
T Consensus 12 ~~~~~~l~~~~~~~iGr~~~~--~~i~l----~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~-~~~l~ 84 (102)
T cd00060 12 SGRRYYLDPGGTYTIGRDSDN--CDIVL----DDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGE-PVRLR 84 (102)
T ss_pred ceeEEEECCCCeEEECcCCCc--CCEEc----CCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCC-cEECC
Confidence 467899998 99999999985 47777 589999999999998644566666778999999999998754 69999
Q ss_pred CCCEEEeCCeEEEEEe
Q 020578 98 SQDLLQIGDKEFYFLL 113 (324)
Q Consensus 98 ~GDlIqIG~t~f~Fll 113 (324)
+||.|+||...+.|.+
T Consensus 85 ~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 85 DGDVIRLGNTSISFRF 100 (102)
T ss_pred CCCEEEECCeEEEEEE
Confidence 9999999965555544
No 3
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-14 Score=146.38 Aligned_cols=104 Identities=30% Similarity=0.374 Sum_probs=98.2
Q ss_pred eEEEEecCceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCC
Q 020578 12 GFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGN 91 (324)
Q Consensus 12 ayAkL~G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~ 91 (324)
|+|+|.|+.-.|+|++++|+|||++....|||||+..|+...|||++|.|..-. ++.|+|.++||.-+||||..+.+|+
T Consensus 432 AiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n-~GsF~IkNlGK~~I~vng~~l~~gq 510 (547)
T KOG2293|consen 432 AIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKN-DGSFFIKNLGKRSILVNGGELDRGQ 510 (547)
T ss_pred eeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEecc-CCcEEeccCcceeEEeCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999974 7999999999999999999999998
Q ss_pred CCeecCCCCEEEeCCeEEEEEecCcc
Q 020578 92 PPVKLDSQDLLQIGDKEFYFLLPVRS 117 (324)
Q Consensus 92 ~pv~L~~GDlIqIG~t~f~Fllp~~s 117 (324)
.+.|++.++|+|-+..|+|.+....
T Consensus 511 -~~~L~~nclveIrg~~FiF~~N~~~ 535 (547)
T KOG2293|consen 511 -KVILKNNCLVEIRGLRFIFEINQEA 535 (547)
T ss_pred -eEEeccCcEEEEccceEEEeecHHH
Confidence 6999999999999999999875443
No 4
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.38 E-value=1.9e-12 Score=128.36 Aligned_cols=89 Identities=31% Similarity=0.399 Sum_probs=75.1
Q ss_pred CceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEc--CEEeCCCCCCeec
Q 020578 19 EDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVE--GVLHLPGNPPVKL 96 (324)
Q Consensus 19 ~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVN--G~~i~pG~~pv~L 96 (324)
....|.+.+..++|||+++ |++.|. +....|||+||+|.++ ++.|+|+|+|+|||||| |.++.++. +++|
T Consensus 15 ~~~~~~f~~~~~~IGR~~~---~d~~l~--d~~~~VS~~Ha~I~~~--~g~~~l~DlStNGT~VN~sg~~l~~~~-~~~L 86 (396)
T TIGR03354 15 IAAQKTFGTNGGTIGRSED---CDWVLP--DPERHVSGRHARIRYR--DGAYLLTDLSTNGVFLNGSGSPLGRGN-PVRL 86 (396)
T ss_pred cceEEEECCCCEEEecCCC---CCEEeC--CCCCCcchhhcEEEEE--CCEEEEEECCCCCeEECCCCCCCCCCC-ceEc
Confidence 3457888888999999997 456662 2234599999999997 48999999999999999 89998765 6899
Q ss_pred CCCCEEEeCCeEEEEEecC
Q 020578 97 DSQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 97 ~~GDlIqIG~t~f~Fllp~ 115 (324)
.+||+|+||.+.+.|.+..
T Consensus 87 ~~GD~I~iG~~~lrv~~~~ 105 (396)
T TIGR03354 87 EQGDRLRLGDYEIRVSLGD 105 (396)
T ss_pred CCCCEEEECCEEEEEEeCC
Confidence 9999999999999999853
No 5
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-10 Score=100.51 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=66.1
Q ss_pred EEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCeecCCCCE
Q 020578 23 YYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQDL 101 (324)
Q Consensus 23 y~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~L~~GDl 101 (324)
+.+.+..++|||+.+ .++.+ ++..|||+||.|.++. +.++++++ |+|||||||.++.+ .+.|.+||.
T Consensus 84 ~~~~~~~~tigr~~~---~~i~~----~~~~vSR~Ha~l~~~~--~~~~~~d~~S~nGt~vn~~~v~~---~~~l~~gd~ 151 (191)
T COG1716 84 IVLGEPVTTIGRDPD---NDIVL----DDDVVSRRHAELRREG--NEVFLEDLGSTNGTYVNGEKVRQ---RVLLQDGDV 151 (191)
T ss_pred cccccceEEeccCCC---CCEEc----CCCccccceEEEEEeC--CceEEEECCCCcceEECCeEccC---cEEcCCCCE
Confidence 444455899999666 45666 6899999999999974 67778877 59999999999974 479999999
Q ss_pred EEeCCeEE-EEEecCcc
Q 020578 102 LQIGDKEF-YFLLPVRS 117 (324)
Q Consensus 102 IqIG~t~f-~Fllp~~s 117 (324)
|+||...+ .+......
T Consensus 152 i~i~~~~~~~~~~~~~~ 168 (191)
T COG1716 152 IRLGGTLAERLRIILTE 168 (191)
T ss_pred EEECccceeeEeecccc
Confidence 99999888 55444333
No 6
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.16 E-value=6.8e-11 Score=124.27 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=68.1
Q ss_pred EEEe---ecCeEEEcCCCCCCc--eeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEE---e--CCC
Q 020578 22 EYYM---QTYSIILGRNSKKST--VDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVL---H--LPG 90 (324)
Q Consensus 22 ey~L---~~~sItIGR~s~~~~--VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~---i--~pG 90 (324)
.+.| .+.+++|||++..+. .-|.| +++.||++||+|.++ ++.|+|+|| |+|||||||.. + .|+
T Consensus 548 ~~~l~~~~~~p~~iG~~~~~~~~~~~i~i----~~~~vS~~Ha~i~~~--~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~ 621 (668)
T PLN02927 548 TLCLTKDEDQPCIVGSEPDQDFPGMRIVI----PSSQVSKMHARVIYK--DGAFFLMDLRSEHGTYVTDNEGRRYRATPN 621 (668)
T ss_pred eeeeecCCCCCeEecCCCCcCCCCceEEe----cCCccChhHeEEEEE--CCEEEEEECCCCCccEEeCCCCceEecCCC
Confidence 3777 788899999998432 11345 679999999999996 689999998 58999997655 4 355
Q ss_pred CCCeecCCCCEEEeCCe-EEEEEecC
Q 020578 91 NPPVKLDSQDLLQIGDK-EFYFLLPV 115 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~t-~f~Fllp~ 115 (324)
. |++|++||+|+||+. +..|.+..
T Consensus 622 ~-~~~l~~~d~I~~g~~~~~~fr~~~ 646 (668)
T PLN02927 622 F-PARFRSSDIIEFGSDKKAAFRVKV 646 (668)
T ss_pred C-ceEeCCCCEEEeCCCcceeEEEEe
Confidence 5 799999999999984 35666543
No 7
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.04 E-value=6.1e-10 Score=111.30 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=75.5
Q ss_pred ceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCC
Q 020578 20 DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQ 99 (324)
Q Consensus 20 ~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~G 99 (324)
-..+.+.+...+|||++++ |..|. ++...||+.||+|.|+ ++.|+|+|.|.||+||||-.+..|...++|.+|
T Consensus 18 ~aq~~f~~~~g~IGrs~dc---dW~i~--D~~~~VS~~Hc~I~~~--dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqG 90 (430)
T COG3456 18 AAQKLFDRGGGVIGRSPDC---DWQID--DPERFVSKQHCTISYR--DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQG 90 (430)
T ss_pred hhhhhhhcCCcccccCCCC---Ccccc--CcccccchhheEEEec--CCeEEEEecCCCceeecccccCCCCCccccccC
Confidence 3457777888999999984 44432 4679999999999997 589999999988999999988777644899999
Q ss_pred CEEEeCCeEEEEEecC
Q 020578 100 DLLQIGDKEFYFLLPV 115 (324)
Q Consensus 100 DlIqIG~t~f~Fllp~ 115 (324)
|.|+||++.|...+..
T Consensus 91 d~i~iG~y~i~V~l~~ 106 (430)
T COG3456 91 DEILIGRYIIRVHLSR 106 (430)
T ss_pred CEEeeccEEEEEEecc
Confidence 9999999999999965
No 8
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.96 E-value=1.1e-09 Score=76.96 Aligned_cols=51 Identities=47% Similarity=0.703 Sum_probs=42.0
Q ss_pred EEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCC-CCceEEcCEEe
Q 020578 30 IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLH 87 (324)
Q Consensus 30 ItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLS-kNGTfVNG~~i 87 (324)
++|||.+.. +++.+ ++..|||.||+|.++. .+.|+|.+++ +|||||||+++
T Consensus 1 ~~iGr~~~~--~~i~~----~~~~vs~~H~~i~~~~-~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSED--CDIQL----PGPSISRRHAEIVYDG-GGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCC--CCEEe----CCCCcchhHcEEEECC-CCeEEEEECCCCCCeeECCEEC
Confidence 479999942 56666 5678999999999986 3479999987 99999999875
No 9
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.89 E-value=4.1e-05 Score=83.88 Aligned_cols=89 Identities=28% Similarity=0.385 Sum_probs=72.7
Q ss_pred EEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCCCE
Q 020578 22 EYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDL 101 (324)
Q Consensus 22 ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~GDl 101 (324)
-|+|....++|||.+.+...||.|+ ...|--.||.|+-+..++-..|.....-=|||||++|. +|..|++||+
T Consensus 471 lY~ikeG~TrVG~~~a~~~~DI~Ls----G~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~---ep~qL~~GdR 543 (1221)
T KOG0245|consen 471 LYYIKEGETRVGREDASSRQDIVLS----GQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVT---EPTQLRSGDR 543 (1221)
T ss_pred EEEeccCceecCCCCcccCCceEec----chhhhhhceEEEecCCCceEEeccCCccceeEccEEcC---CcceeccCCE
Confidence 4999999999999988888899994 67899999999987644435666665567999999996 3789999999
Q ss_pred EEeCC-eEEEEEecCcc
Q 020578 102 LQIGD-KEFYFLLPVRS 117 (324)
Q Consensus 102 IqIG~-t~f~Fllp~~s 117 (324)
|-||+ .-|.|.-|.+.
T Consensus 544 iilG~~H~frfn~P~~a 560 (1221)
T KOG0245|consen 544 IILGGNHVFRFNHPEQA 560 (1221)
T ss_pred EEEcCceeEEecCHHHH
Confidence 99995 56788777644
No 10
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=97.87 E-value=6.3e-06 Score=86.48 Aligned_cols=109 Identities=27% Similarity=0.367 Sum_probs=92.9
Q ss_pred ccceEEEEecCceEEEeecCeEEEcCCCC--CC-------------ceeeecCCCCCCCcccccceEEEEecCCCeEEEE
Q 020578 9 VEAGFAKLQGEDFEYYMQTYSIILGRNSK--KS-------------TVDVDLSSLGGGMNISRHHARIFYDFTRRRFALE 73 (324)
Q Consensus 9 ~~~ayAkL~G~~~ey~L~~~sItIGR~s~--~~-------------~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~Le 73 (324)
...+||+|.|..|.|+....++.+||..+ +. ..++++ +..+.++|.|+.|.||-..+.|+|.
T Consensus 70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~ 146 (610)
T COG5025 70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIK 146 (610)
T ss_pred HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEE
Confidence 67899999999999999999999999544 21 123443 6889999999999999888999999
Q ss_pred eCCCCceEEcCEEe--CCCCCCeecCCCCEEEeCCeEEEEEecCccccC
Q 020578 74 VLGKNGCFVEGVLH--LPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 120 (324)
Q Consensus 74 dLSkNGTfVNG~~i--~pG~~pv~L~~GDlIqIG~t~f~Fllp~~si~~ 120 (324)
+.++||..|+|.+. .|+..++.|..|.++.++.+.+.|.+|......
T Consensus 147 i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~~~~~~ 195 (610)
T COG5025 147 IEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPSSTEIK 195 (610)
T ss_pred EeccCCccccceeeccCCCccceeeccccccccccccccccCcccccee
Confidence 99999999999866 455567899999999999999999998876544
No 11
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.75 E-value=1.9e-05 Score=83.89 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=67.5
Q ss_pred cCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCe---------EEEEeCC-CCceEEcCEEeCCCCCCeec
Q 020578 27 TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRR---------FALEVLG-KNGCFVEGVLHLPGNPPVKL 96 (324)
Q Consensus 27 ~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~---------F~LedLS-kNGTfVNG~~i~pG~~pv~L 96 (324)
+...+|||-+. ||+-+ ..+.|||.||.|.|-..+-. |+|.++| +.|||+|-.++.+.. -+++
T Consensus 176 ~~~~~fgr~~~---cD~~~----eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~-yir~ 247 (793)
T KOG1881|consen 176 AAACLFGRLGG---CDVAL----EHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKV-YIRD 247 (793)
T ss_pred ceeEEecccCC---Ccccc----ccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcc-hhhh
Confidence 34579999996 67776 67899999999999654445 9999886 899999999997654 4789
Q ss_pred CCCCEEEeCCeEEEEEecCcc
Q 020578 97 DSQDLLQIGDKEFYFLLPVRS 117 (324)
Q Consensus 97 ~~GDlIqIG~t~f~Fllp~~s 117 (324)
.-|+++++|+..++|.+....
T Consensus 248 ~Vg~v~~fggsTrl~i~Qgp~ 268 (793)
T KOG1881|consen 248 RVGHVARFGGSTRLYIFQGPE 268 (793)
T ss_pred hHHHHHHhcCceEEEEeeCCC
Confidence 999999999988887765433
No 12
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.74 E-value=5e-05 Score=72.40 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=53.2
Q ss_pred cCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC------------CeEEEEeCCCCceEEcCEEeCCCCCCe
Q 020578 27 TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR------------RRFALEVLGKNGCFVEGVLHLPGNPPV 94 (324)
Q Consensus 27 ~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~------------~~F~LedLSkNGTfVNG~~i~pG~~pv 94 (324)
+...++||.-. ..||-+ +.+..|.+||+|.|-.-. ..|+|+..|.||||||.+.|.+.. =+
T Consensus 193 qs~yL~gRerk--IaDi~i----dhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqR-Yy 265 (293)
T KOG1882|consen 193 QSCYLDGRERK--IADIPI----DHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQR-YY 265 (293)
T ss_pred eeeeecCceee--eeccCC----CCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchh-ee
Confidence 44567888433 244544 679999999999985311 244444456999999999997643 57
Q ss_pred ecCCCCEEEeCC
Q 020578 95 KLDSQDLLQIGD 106 (324)
Q Consensus 95 ~L~~GDlIqIG~ 106 (324)
.|..+|+|.||.
T Consensus 266 EL~ekDvlkfgf 277 (293)
T KOG1882|consen 266 ELREKDVLKFGF 277 (293)
T ss_pred eeecCceeeecc
Confidence 899999999994
No 13
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=96.89 E-value=0.0019 Score=63.24 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=66.1
Q ss_pred EEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCC-CCceEEcCEEeCCCCCCeecCCCCE
Q 020578 23 YYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLHLPGNPPVKLDSQDL 101 (324)
Q Consensus 23 y~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLS-kNGTfVNG~~i~pG~~pv~L~~GDl 101 (324)
..+.+....+||+...++++|| ...+||.||-+.|-.....++|.|++ +.||||-..++.+.. ++.|..|..
T Consensus 33 ~iddkr~y~Fgrn~q~~df~id------h~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~-p~~l~i~~~ 105 (337)
T KOG1880|consen 33 IIDDKRRYLFGRNHQTCDFVID------HASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHK-PVQLEIGST 105 (337)
T ss_pred HhhhhhhhhhccCCCccceEee------cchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCC-CccccCCce
Confidence 3445666789999987555554 47999999999997656667777775 679999999998865 899999999
Q ss_pred EEeCCeEEEEEecCc
Q 020578 102 LQIGDKEFYFLLPVR 116 (324)
Q Consensus 102 IqIG~t~f~Fllp~~ 116 (324)
+.+|-..-.+.+-..
T Consensus 106 ~~fgasTr~y~lr~k 120 (337)
T KOG1880|consen 106 FHFGASTRIYLLREK 120 (337)
T ss_pred EEEeccceeeeeecc
Confidence 999965444444444
No 14
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.50 E-value=0.0052 Score=63.96 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=66.1
Q ss_pred cCceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 020578 18 GEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 18 G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~ 97 (324)
+....+.|....++|||.+... | .++.-||++.++.-|...+...+..||.|.+-|||+.+.++. .+.|.
T Consensus 22 ~~~~~~~~~~~~~~~gr~pet~---i------~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~-~~~l~ 91 (526)
T TIGR01663 22 AEHHFIHLDAGALFLGRGPETG---I------RDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGG-EGELG 91 (526)
T ss_pred CCCCeeccCCCceEEccCcccc---c------chhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCC-eeeec
Confidence 4445677777889999999842 3 478999999999999866666778999999999999999987 59999
Q ss_pred CCCEEEeCC
Q 020578 98 SQDLLQIGD 106 (324)
Q Consensus 98 ~GDlIqIG~ 106 (324)
+||++.|=.
T Consensus 92 ~g~~l~~v~ 100 (526)
T TIGR01663 92 HGDLLEIVN 100 (526)
T ss_pred CCCEEEEec
Confidence 999999975
No 15
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=96.43 E-value=0.026 Score=56.54 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=70.6
Q ss_pred EEEecCc--eEEEeecCeEEEc-CCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcC--EEeC
Q 020578 14 AKLQGED--FEYYMQTYSIILG-RNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEG--VLHL 88 (324)
Q Consensus 14 AkL~G~~--~ey~L~~~sItIG-R~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG--~~i~ 88 (324)
-+|.|.. .++.|....++|| +..+ |||.| .+..|||+|++|..+. ..+.+.+. .+++.+|| ....
T Consensus 4 rvl~G~~~G~~~~L~~g~~~iG~~~~~---~di~L----~d~~~~~~h~~l~v~~--~~~~l~~~-~~~~~~~g~~~~~~ 73 (410)
T TIGR02500 4 RVLSGPHRGAELPLPEGNLVLGTDAAD---CDIVL----SDGGIAAVHVSLHVRL--EGVTLAGA-VEPAWEEGGVLPDE 73 (410)
T ss_pred EEecCCCCCcEEECCCCceEeccCCCC---cEEEe----CCCCccchheEEEEcC--ceEEEecC-CcceeECCcccccC
Confidence 4566664 5899998889999 8766 78888 6999999999999974 45555533 55799999 5555
Q ss_pred CCCCCeecCCCCEEEeCCeEEEEEecCccc
Q 020578 89 PGNPPVKLDSQDLLQIGDKEFYFLLPVRSI 118 (324)
Q Consensus 89 pG~~pv~L~~GDlIqIG~t~f~Fllp~~si 118 (324)
.+ ..|..+-.|++|...|.|--.....
T Consensus 74 ~g---~~l~~~~~l~~g~~~~~~g~~~~~l 100 (410)
T TIGR02500 74 EG---TPLPSGTPLLVAGVAFALGEVDDAL 100 (410)
T ss_pred CC---CccCCCCceecceeEEeccCCcccC
Confidence 44 4799999999999999985544443
No 16
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=0.0067 Score=61.97 Aligned_cols=81 Identities=25% Similarity=0.203 Sum_probs=54.2
Q ss_pred EEeecCeEEEcCCCCCCceeeec-----CC----CCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCC
Q 020578 23 YYMQTYSIILGRNSKKSTVDVDL-----SS----LGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPP 93 (324)
Q Consensus 23 y~L~~~sItIGR~s~~~~VDIDL-----s~----lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~p 93 (324)
..+-....++||+..++ .-| +. +.-...+|-.|-++..+...+.++++|.|+||||||...+-.+. .
T Consensus 59 ~d~~nd~f~fGR~~~~d---~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~-~ 134 (475)
T KOG0615|consen 59 IDLANDEFTFGRGDSCD---APLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGL-S 134 (475)
T ss_pred ceeccceEEecCCCccc---ccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhccc-c
Confidence 44456688999997633 222 00 00112344444444444456789999999999999998887665 4
Q ss_pred eecCCCCEEEeCCe
Q 020578 94 VKLDSQDLLQIGDK 107 (324)
Q Consensus 94 v~L~~GDlIqIG~t 107 (324)
-.|+++|.|.|+-.
T Consensus 135 r~lkN~dei~is~p 148 (475)
T KOG0615|consen 135 RILKNGDEISISIP 148 (475)
T ss_pred ccccCCCEEEeccc
Confidence 68999999999953
No 17
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=93.72 E-value=0.11 Score=57.85 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=69.0
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCC-ceEEcCEEeCCCCCCeecCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKN-GCFVEGVLHLPGNPPVKLDSQ 99 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkN-GTfVNG~~i~pG~~pv~L~~G 99 (324)
..|.|....+-+|-..-.+. .|-| ..+.|-.+||.|.+= .+-..++..++. =|||||.+|.. +..|++|
T Consensus 371 ~ri~L~~~vtEVGs~~~~~~-~iqL----fGP~IqprHc~it~m--eGVvTvTP~~~DA~t~VnGh~isq---ttiL~~G 440 (1629)
T KOG1892|consen 371 KRIRLQLSVTEVGSEKLDDN-SIQL----FGPGIQPRHCDITNM--EGVVTVTPRSMDAETYVNGHRISQ---TTILQSG 440 (1629)
T ss_pred eeEEeccCceeccccccCCc-ceee----eCCCCCccccchhhc--cceEEecccccchhhhccceecch---hhhhccC
Confidence 56888877888888766432 3555 567899999999874 477778888866 59999999963 5789999
Q ss_pred CEEEeCC-eEEEEEecCccc
Q 020578 100 DLLQIGD-KEFYFLLPVRSI 118 (324)
Q Consensus 100 DlIqIG~-t~f~Fllp~~si 118 (324)
+.|+||. ..|.|+-+.+.-
T Consensus 441 ~~v~fGa~hsfkF~dss~d~ 460 (1629)
T KOG1892|consen 441 MKVQFGASHSFKFVDSSQDH 460 (1629)
T ss_pred CEEEeccceeEEecCCchhh
Confidence 9999995 679998877664
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.39 E-value=0.85 Score=51.30 Aligned_cols=84 Identities=26% Similarity=0.376 Sum_probs=60.4
Q ss_pred EEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCCCE
Q 020578 22 EYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDL 101 (324)
Q Consensus 22 ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~GDl 101 (324)
.|++.+ ..+||-..+ .||.|+ .-.|-+.||+|..+. .+..+++.+....+||||..+.. +++|.+||.
T Consensus 462 vyyl~~-~tlig~~~~---~~i~l~----glgi~p~h~vidI~~-dg~l~~~p~~~~R~~VNGs~v~~---~t~L~~GdR 529 (1714)
T KOG0241|consen 462 VYYLKD-HTLIGLFKS---QDIQLS----GLGIQPKHCVIDIES-DGELRLTPLLNARSCVNGSLVCS---TTQLWHGDR 529 (1714)
T ss_pred HHhhcC-ceeeccccC---cceeee----cCcccCccceeeecc-CCcEEecccccceeeecCceecc---ccccccCce
Confidence 577765 457884443 567775 346778999999886 45566776655589999999852 689999999
Q ss_pred EEeCCeEE-EEEecCcc
Q 020578 102 LQIGDKEF-YFLLPVRS 117 (324)
Q Consensus 102 IqIG~t~f-~Fllp~~s 117 (324)
|-.|+..| .+-+|-..
T Consensus 530 iLwGnnHFFrvN~PK~~ 546 (1714)
T KOG0241|consen 530 ILWGNNHFFRVNLPKRK 546 (1714)
T ss_pred EEecccceEEecCcccc
Confidence 99998765 44444433
No 19
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=76.97 E-value=19 Score=26.84 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeecccCCCCCCCCCCCchhHHHHHHhhCCCcEEEEee
Q 020578 228 DVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTR 307 (324)
Q Consensus 228 ~v~~~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~pw~~l~~ll~kypehfvi~~~ 307 (324)
++.+.|-.+|....+-+.||++..|-.++..+| .-.. ++.| | -..|..||++.|+.|.|-.+
T Consensus 5 ~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~---~~~y------------G--~~~l~~ll~~~~~~~~i~~~ 66 (74)
T PF12872_consen 5 ELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFD---PRDY------------G--FSSLSELLESLPDVVEIEER 66 (74)
T ss_dssp HHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT-----TCCT------------T--SSSHHHHHHT-TTTEEEEEE
T ss_pred HHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCC---cccc------------C--CCcHHHHHHhCCCeEEEeee
Confidence 455556666666666555999999999999998 4333 3333 1 23578888899999999544
Q ss_pred cCCc
Q 020578 308 SKGR 311 (324)
Q Consensus 308 ~~~~ 311 (324)
..|+
T Consensus 67 ~~g~ 70 (74)
T PF12872_consen 67 QHGG 70 (74)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 4444
No 20
>PRK11507 ribosome-associated protein; Provisional
Probab=70.39 E-value=10 Score=30.08 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=24.9
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~F 111 (324)
+-+.|||+.-.+-. .+|.+||+|+|.+..+.+
T Consensus 37 g~V~VNGeve~rRg--kKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETRKR--CKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecccC--CCCCCCCEEEECCEEEEE
Confidence 45999998554432 589999999999987665
No 21
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=69.89 E-value=3.6 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=19.5
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~F 111 (324)
+.++|||+.-.+-. .+|.+||+|.|++..+..
T Consensus 33 g~V~VNGe~e~rrg--~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETRRG--KKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB----SS------SSEEEEETTEEEEE
T ss_pred CceEECCEEccccC--CcCCCCCEEEECCEEEEE
Confidence 45899998665432 589999999999887764
No 22
>KOG2294 consensus Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=68.61 E-value=8.2 Score=38.29 Aligned_cols=93 Identities=43% Similarity=0.715 Sum_probs=67.6
Q ss_pred eEEEeecCeEEEcCCCCCCc------eeee--cCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCC--
Q 020578 21 FEYYMQTYSIILGRNSKKST------VDVD--LSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPG-- 90 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~------VDID--Ls~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG-- 90 (324)
+.++.....+++||...... .+.+ ...++....+++.|+.|.++.....|.....++|+..++...-..+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~SY~~LI 139 (454)
T KOG2294|consen 60 FTYYVQKLHVILGRPGSSSNSSPSASSGVDVNVQDLGPTKAISRKHAKIFYDLGRQRFSLPVPGKNGAGVKPPYSYSGLI 139 (454)
T ss_pred ceeeccchhhccccccccccccccccccccccccccCCcccccccccccccccccCCccccccccCCCCcCCcccccccc
Confidence 56777888889999533211 1110 0124788999999999999987778999999999888887533322
Q ss_pred CCCeecCCCCEEEeCCeEEEEEe
Q 020578 91 NPPVKLDSQDLLQIGDKEFYFLL 113 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~t~f~Fll 113 (324)
.-.+.+.++..|.++++-..|+.
T Consensus 140 ~mAI~~Sp~krLtLs~Iy~~i~~ 162 (454)
T KOG2294|consen 140 AMAIRLSPGKRLTLGGIYFYILL 162 (454)
T ss_pred ccccccCCCcceeecCeeEEEEe
Confidence 12588999999999998877776
No 23
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=68.34 E-value=11 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEE
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFL 112 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~Fl 112 (324)
+-++|||+.-.+-. .+|.+||+|.|.+..+...
T Consensus 37 g~V~vNGe~EtRRg--kKlr~gd~V~i~~~~~~v~ 69 (73)
T COG2501 37 GEVKVNGEVETRRG--KKLRDGDVVEIPGQRYQVV 69 (73)
T ss_pred CeEEECCeeeeccC--CEeecCCEEEECCEEEEEE
Confidence 56999998765543 6899999999999876654
No 24
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.59 E-value=16 Score=37.65 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=14.9
Q ss_pred ecCCCCEEEeCCeEEEEEecC
Q 020578 95 KLDSQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 95 ~L~~GDlIqIG~t~f~Fllp~ 115 (324)
.|.+|.+|.+.+..+.+.-..
T Consensus 235 iL~DGtLIDLCGaTLlWRsa~ 255 (416)
T PF04710_consen 235 ILQDGTLIDLCGATLLWRSAE 255 (416)
T ss_dssp B--TT-EEE-SSSEEEEEEHH
T ss_pred ccccccChhhceeeeEecchh
Confidence 699999999999999998654
No 25
>PRK01777 hypothetical protein; Validated
Probab=61.94 E-value=9.4 Score=31.52 Aligned_cols=28 Identities=21% Similarity=0.016 Sum_probs=22.4
Q ss_pred eCCCCceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 74 VLGKNGCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 74 dLSkNGTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+++.+-+.|||+..... ..|++||.|.|
T Consensus 46 ~~~~~~vgI~Gk~v~~d---~~L~dGDRVeI 73 (95)
T PRK01777 46 DLAKNKVGIYSRPAKLT---DVLRDGDRVEI 73 (95)
T ss_pred ccccceEEEeCeECCCC---CcCCCCCEEEE
Confidence 34557789999999764 58999999987
No 26
>smart00363 S4 S4 RNA-binding domain.
Probab=61.36 E-value=13 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=20.4
Q ss_pred CceEEcCEEe-CCCCCCeecCCCCEEEeCC
Q 020578 78 NGCFVEGVLH-LPGNPPVKLDSQDLLQIGD 106 (324)
Q Consensus 78 NGTfVNG~~i-~pG~~pv~L~~GDlIqIG~ 106 (324)
+.++|||+.+ .+. ..|..||.|.+-.
T Consensus 26 g~i~vng~~~~~~~---~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKPS---YIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCCC---eEeCCCCEEEEcc
Confidence 4699999988 543 5889999988764
No 27
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=57.24 E-value=15 Score=26.90 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=19.5
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
..++|||+.+..- ..+|..||.|.|
T Consensus 34 G~V~VNg~~~~~~--~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR--GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC--CCCCCCCCEEEe
Confidence 4599999988432 368999999986
No 28
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=56.78 E-value=12 Score=28.34 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=16.3
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
.+|||+....+-..++|++||.|.+
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 5788988877766789999999875
No 29
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=12 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=32.3
Q ss_pred EEEecCCCeEEEEeCC-CCc--eEEcCE--EeCCCCCCeecCCCCEEEeC
Q 020578 61 IFYDFTRRRFALEVLG-KNG--CFVEGV--LHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 61 I~yd~~~~~F~LedLS-kNG--TfVNG~--~i~pG~~pv~L~~GDlIqIG 105 (324)
+.|.+....+++++.. +.| |.||+. .+... +...|.+||.|.|=
T Consensus 42 ~i~~p~~~sifie~g~lrpGiI~LINd~DWeLlek-e~y~ledgDiIvfi 90 (96)
T COG5131 42 FIYAPTRDSIFIEHGELRPGIICLINDMDWELLEK-ERYPLEDGDIIVFI 90 (96)
T ss_pred HHhCCccceeeecCCCCcccEEEEEcCccHhhhhc-ccccCCCCCEEEEE
Confidence 5777777888898877 778 788986 23322 24789999998763
No 30
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=49.60 E-value=17 Score=25.19 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=17.9
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEE
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLL 102 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlI 102 (324)
++++|||+.+... ...+..||+|
T Consensus 26 g~V~VNg~~v~~~--~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDP--SYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESST--TSBESTTEEE
T ss_pred CEEEECCEEEcCC--CCCCCCcCCC
Confidence 5699999999732 2578899976
No 31
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=47.71 E-value=27 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=20.7
Q ss_pred CCceEEcCEEe-CCCCCCeecCCCCEEEeCC
Q 020578 77 KNGCFVEGVLH-LPGNPPVKLDSQDLLQIGD 106 (324)
Q Consensus 77 kNGTfVNG~~i-~pG~~pv~L~~GDlIqIG~ 106 (324)
.++++|||+.+ .++ ..+..||.|.+..
T Consensus 25 ~g~V~vn~~~~~~~~---~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTKPS---YKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccCCc---cCcCCCCEEEEcC
Confidence 45799999988 443 5788899888864
No 32
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=42.81 E-value=1e+02 Score=31.76 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=48.1
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~GD 100 (324)
++..+-...+++|=.. |||.+ .+ - .++.+...-.....+++. +.--++|||.++..++ +|.-+-
T Consensus 17 rEl~Lp~G~~tlG~~g----cDi~l-pL-----~--~~~~~~L~i~e~gi~l~~-~~~~vwVnG~~~~~~~---~LPl~q 80 (395)
T PRK15367 17 REVWLNEGNLSLGEKG----CDICI-PL-----T--INEKIILREQADSLFVDA-GKARVRVNGRRFNPNK---PLPSSG 80 (395)
T ss_pred cEEecCCCceeecCCC----ceEEE-EC-----C--CCCEEEEEEcCCcEEEec-CCceEEECCEEcCCCC---CCCCcc
Confidence 4777777889999843 45554 11 1 233332322223333322 2235999999997654 588999
Q ss_pred EEEeCCeEEEEEe
Q 020578 101 LLQIGDKEFYFLL 113 (324)
Q Consensus 101 lIqIG~t~f~Fll 113 (324)
.|++++..|.|=-
T Consensus 81 ~Ie~aG~~~vlG~ 93 (395)
T PRK15367 81 VLQVAGVAIAFGK 93 (395)
T ss_pred hhhhcceEEEecC
Confidence 9999998888733
No 33
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=39.19 E-value=36 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=17.9
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-++|||+.+.. ..+|++||.|.|
T Consensus 51 ~v~vNg~~v~~---~~~l~~gD~v~i 73 (80)
T cd00754 51 RIAVNGEYVRL---DTPLKDGDEVAI 73 (80)
T ss_pred EEEECCeEcCC---CcccCCCCEEEE
Confidence 48889988863 368999998865
No 34
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.31 E-value=42 Score=34.12 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=19.7
Q ss_pred eecCCCCEEEeCCeEEEEEecCcc
Q 020578 94 VKLDSQDLLQIGDKEFYFLLPVRS 117 (324)
Q Consensus 94 v~L~~GDlIqIG~t~f~Fllp~~s 117 (324)
-.|++|.+|.+.+..+.++.+...
T Consensus 247 N~LQDGsLIDLCGATlLWRta~GL 270 (429)
T KOG3842|consen 247 NVLQDGSLIDLCGATLLWRTADGL 270 (429)
T ss_pred ccccccchhhhccceeEEeccccc
Confidence 369999999999999998765544
No 35
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=36.84 E-value=30 Score=26.75 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=11.4
Q ss_pred cCCCCEEEeCCeEEEE
Q 020578 96 LDSQDLLQIGDKEFYF 111 (324)
Q Consensus 96 L~~GDlIqIG~t~f~F 111 (324)
.++||+|.||+..|.|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T PF09269_consen 54 AKEGDTVRIGDYEFEY 69 (69)
T ss_dssp --TT-EEEETTEEEE-
T ss_pred CCCCCEEEEcCEEEEC
Confidence 6799999999999876
No 36
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=36.62 E-value=34 Score=25.41 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=18.1
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+..|||+.+... .+|.++|.|+|
T Consensus 36 ~A~Vng~~vdl~---~~L~~~d~v~i 58 (60)
T PF02824_consen 36 AAKVNGQLVDLD---HPLEDGDVVEI 58 (60)
T ss_dssp EEEETTEEEETT---SBB-SSEEEEE
T ss_pred EEEEcCEECCCC---CCcCCCCEEEE
Confidence 677999988653 58999999987
No 37
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=35.63 E-value=44 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=19.7
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqIG 105 (324)
-++|||+.+... ..|++||.|.+-
T Consensus 51 ~i~vNG~~v~~~---~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 51 LILVNGRPVDFD---YRLKDGDRVAVY 74 (81)
T ss_pred EEEECCEECCCc---ccCCCCCEEEEE
Confidence 488999999774 689999988763
No 38
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=35.10 E-value=47 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=18.0
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-+.|||+.+.... ..+|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~-~~~l~dgdev~i 81 (88)
T TIGR01687 57 IILVNGRNVDWGL-GTELKDGDVVAI 81 (88)
T ss_pred EEEECCEecCccC-CCCCCCCCEEEE
Confidence 3788998886543 258999997754
No 39
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=31.55 E-value=56 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=16.9
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+.|||..+.+.+ ....|++||.|.|
T Consensus 33 v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 33 VAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred EEECCEEcCchhcccccCCCCCEEEE
Confidence 467777765421 1357999999876
No 40
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=30.99 E-value=52 Score=24.40 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=17.3
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+.|||+.+.+.+ ....|++||.|.|
T Consensus 33 V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 33 VALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEE
Confidence 557888775431 1268999998876
No 41
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=30.86 E-value=40 Score=26.06 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.1
Q ss_pred cCCCCEEEeCCeEEEE
Q 020578 96 LDSQDLLQIGDKEFYF 111 (324)
Q Consensus 96 L~~GDlIqIG~t~f~F 111 (324)
.++||+|.||+..|.|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T TIGR03595 54 AKDGDTVRIGDFEFEW 69 (69)
T ss_pred CCCCCEEEEccEEEeC
Confidence 6799999999988865
No 42
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=30.82 E-value=61 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=17.0
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+-|||+.+.+.+ ....|++||.|.|
T Consensus 32 v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 32 VAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEE
Confidence 446777775432 1358999999876
No 43
>PRK06437 hypothetical protein; Provisional
Probab=30.24 E-value=68 Score=24.41 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.4
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.+||..+.. ...|++||.|.|
T Consensus 39 V~vNg~iv~~---~~~L~dgD~Vei 60 (67)
T PRK06437 39 VIVNGSPVLE---DHNVKKEDDVLI 60 (67)
T ss_pred EEECCEECCC---ceEcCCCCEEEE
Confidence 5577777753 368999999886
No 44
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=28.00 E-value=42 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.4
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-+.|||+.+........|++||.|.|
T Consensus 45 ~v~vN~~~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 45 AVAVNGEIVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEETTEEEGGGTTTSBEETTEEEEE
T ss_pred EEEECCEEcCCccCCcCcCCCCEEEE
Confidence 47889988876111368999998765
No 45
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=27.84 E-value=19 Score=39.37 Aligned_cols=38 Identities=37% Similarity=0.621 Sum_probs=29.6
Q ss_pred CccchhHHHHhhhhhHHHHHHHHHHhhcc-CCCCceehh
Q 020578 213 DRESDNQQLLQLEEKDVVSSVATVLSDLC-GPGEWMPME 250 (324)
Q Consensus 213 ~~~~d~~~~~~~ee~~v~~~~~~~lsdlc-g~~ew~p~~ 250 (324)
+|----..|+|+..++=.=-=|.++-||| -||-||-+.
T Consensus 24 yrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA 62 (780)
T KOG1098|consen 24 YRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVA 62 (780)
T ss_pred hhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHH
Confidence 34444567999999996666688999999 899998553
No 46
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=27.83 E-value=57 Score=26.55 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=17.8
Q ss_pred eEEcCEEeC--CCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHL--PGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~--pG~~pv~L~~GDlIqI 104 (324)
++|||..+. .+. .++|++||.|.|
T Consensus 62 VlvN~~di~~l~g~-~t~L~dgD~v~i 87 (94)
T cd01764 62 VLINDTDWELLGEE-DYILEDGDHVVF 87 (94)
T ss_pred EEECCccccccCCc-ccCCCCcCEEEE
Confidence 788998764 232 478999998765
No 47
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=24.10 E-value=90 Score=23.93 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=17.2
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.||++.+.. ..+|++||.|.|
T Consensus 52 v~vn~~~v~~---~~~l~dgDevai 73 (80)
T TIGR01682 52 VAVNEEYVTD---DALLNEGDEVAF 73 (80)
T ss_pred EEECCEEcCC---CcCcCCCCEEEE
Confidence 7888888763 368999998765
No 48
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=23.86 E-value=74 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=15.2
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+-|||..+.+.. ....|++||.|+|
T Consensus 34 v~vNg~iv~r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 34 VEVNGEIVPRSQHASTALREGDVVEI 59 (66)
T ss_pred EEECCeEeCHHHcCcccCCCCCEEEE
Confidence 344555443221 1368999999987
No 49
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=23.52 E-value=77 Score=23.49 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.1
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+-||+..+.+.. ..+.|++||.|.|
T Consensus 33 vavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 33 TAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred EEECCEEcCHHHcCccccCCCCEEEE
Confidence 566777775421 1368999999986
No 50
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=22.17 E-value=96 Score=23.55 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=17.4
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+-||+..+.+.+ ....|++||.|+|
T Consensus 35 v~vN~~iv~r~~w~~~~L~~gD~iEI 60 (67)
T PRK07696 35 VERNKDILQKDDHTDTSVFDGDQIEI 60 (67)
T ss_pred EEECCEEeCHHHcCceecCCCCEEEE
Confidence 456777775532 2367999999987
No 51
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.90 E-value=79 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.022 Sum_probs=16.5
Q ss_pred EEcCEEeCCCCCCeecCCCCEEEe
Q 020578 81 FVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 81 fVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-++|+++... .+|++||+|+|
T Consensus 53 ~~~gq~Vgl~---~~L~d~DvVeI 73 (75)
T cd01666 53 KHSPQRVGLD---HVLEDEDVVQI 73 (75)
T ss_pred cCCCeECCCC---CEecCCCEEEE
Confidence 3477888553 68999999997
No 52
>PRK07440 hypothetical protein; Provisional
Probab=21.66 E-value=97 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=17.0
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+-+||..+.+.. ....|++||.|+|
T Consensus 38 v~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 38 VEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred EEECCEEeCHHHcCceecCCCCEEEE
Confidence 445777665432 2368999999987
No 53
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=21.42 E-value=1.1e+02 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.2
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.||++.+.. ...|++||.|.|
T Consensus 54 vavN~~~v~~---~~~l~dgDeVai 75 (82)
T PLN02799 54 LALNEEYTTE---SAALKDGDELAI 75 (82)
T ss_pred EEECCEEcCC---CcCcCCCCEEEE
Confidence 6678777642 368999998875
No 54
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=21.02 E-value=60 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=15.7
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+-+|+..+.+.+-...|++||.|.|
T Consensus 34 v~~N~~iv~r~~~~~~L~~gD~ieI 58 (65)
T PRK05863 34 VAVDWSVLPRSDWATKLRDGARLEV 58 (65)
T ss_pred EEECCcCcChhHhhhhcCCCCEEEE
Confidence 4456665544322235999999987
No 55
>PHA02650 hypothetical protein; Provisional
Probab=20.95 E-value=70 Score=26.22 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhcCccc------cccceeecccCCCCCCC---CCCCchhHHHHH
Q 020578 249 MEKLYTELVEQYGDVWH------HSRVRRYLTADEWPGPE---SKEKPWYGLLML 294 (324)
Q Consensus 249 ~~klh~~l~~~~~~~~~------~~~v~~~l~~~~~~~~~---~~~~pw~~l~~l 294 (324)
|+||.+-++--|=+-=. =+-|+..||.++.+.++ +++.+|+-+.-+
T Consensus 1 MDKLYaaiFGVFmsS~DdDFnnFI~VVkSVLtD~~~~~~~~~~~~~~~~~~~ii~ 55 (81)
T PHA02650 1 MDKLYAAIFGVFMSSTDDDFNNFIDVVKSVLSDEDGSKKTIKSVSWFNGQNFIFL 55 (81)
T ss_pred ChhHHHHHHhhhcCCcHHHHHHHHHHHHHHHcCCCCccccccccCCchHHHHHHH
Confidence 78888877622211000 13488899998887775 556777765443
No 56
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=20.67 E-value=1.2e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=15.8
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.+||+.+.. ...|++||.|.|
T Consensus 42 v~vNg~iv~~---~~~l~~gD~Vei 63 (70)
T PRK08364 42 AKVNGKVALE---DDPVKDGDYVEV 63 (70)
T ss_pred EEECCEECCC---CcCcCCCCEEEE
Confidence 4467777743 257999998876
No 57
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.63 E-value=1.2e+02 Score=25.49 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=17.8
Q ss_pred ceEEEEecCCCeEEEEeC----CCCceEEc
Q 020578 58 HARIFYDFTRRRFALEVL----GKNGCFVE 83 (324)
Q Consensus 58 HA~I~yd~~~~~F~LedL----SkNGTfVN 83 (324)
=|.|.+| ++|+|.+. |.||.||.
T Consensus 20 ~asit~d---d~fvI~~ikVieg~~GlFVa 46 (94)
T PRK13259 20 IVSITFD---NEFVVHDIRVIEGNNGLFIA 46 (94)
T ss_pred EEEEEEC---CEEEEeeeEEEECCCCeEEE
Confidence 3677775 69999853 78899987
No 58
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=21 Score=31.53 Aligned_cols=46 Identities=35% Similarity=0.839 Sum_probs=33.0
Q ss_pred HHHHHhcCc--cccccceeeccc-CCCCCCCCCCCchhHH-HHHHhhCCC
Q 020578 255 ELVEQYGDV--WHHSRVRRYLTA-DEWPGPESKEKPWYGL-LMLLRKYPE 300 (324)
Q Consensus 255 ~l~~~~~~~--~~~~~v~~~l~~-~~~~~~~~~~~pw~~l-~~ll~kype 300 (324)
+++|+||+. -+...+++|+.+ +-|-.-.-+-|||.-+ |.=.||||.
T Consensus 69 ei~ekygd~lFLT~eElkkY~ks~~rWg~r~kkkkpWmvi~L~nvrkY~k 118 (145)
T COG2028 69 EIIEKYGDRLFLTPEELKKYMKSRKRWGSRGKKKKPWMVIELRNVRKYPK 118 (145)
T ss_pred HHHHHhCCeeecCHHHHHHHHHHHHHhccccccCCceEEEEeechhhCCC
Confidence 688999984 345556666663 4688878888999764 455799974
No 59
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=20.24 E-value=56 Score=30.64 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=38.5
Q ss_pred HHhhhhhHHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeeccc
Q 020578 221 LLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTA 275 (324)
Q Consensus 221 ~~~~ee~~v~~~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~~~~~~v~~~l~~ 275 (324)
+...+|.+++..|+..- .|.-.-..+|++.+-.+||++|-.|.|..
T Consensus 75 lfS~~EE~lL~~v~s~~---------~p~le~Fq~LL~~n~~vFh~sRTak~L~~ 120 (199)
T PF13325_consen 75 LFSKEEEQLLGTVASSS---------QPSLETFQELLDKNRSVFHPSRTAKSLQD 120 (199)
T ss_pred CCCHHHHHHHHhhhhcc---------CCcHHHHHHHHHhChhhhccccCHHHHHH
Confidence 66788999988877633 77778899999999999999998888853
Done!