Query 020578
Match_columns 324
No_of_seqs 146 out of 1108
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3va4_A Mediator of DNA damage 99.8 3.3E-18 1.1E-22 144.6 12.0 96 13-116 27-128 (132)
2 4h87_A Kanadaptin; FHA domain 99.7 2.4E-17 8.3E-22 138.7 12.8 93 13-113 23-128 (130)
3 3po8_A RV0020C protein, putati 99.7 2.4E-17 8.2E-22 131.3 11.2 85 17-114 12-97 (100)
4 1uht_A Expressed protein; FHA 99.7 1.8E-17 6E-22 135.7 9.3 83 21-112 25-109 (118)
5 3hx1_A SLR1951 protein; P74513 99.7 4.7E-17 1.6E-21 136.8 12.0 101 1-112 1-112 (131)
6 1lgp_A Cell cycle checkpoint p 99.7 2.4E-17 8.4E-22 134.2 9.1 97 12-115 3-110 (116)
7 3gqs_A Adenylate cyclase-like 99.7 7.4E-17 2.5E-21 129.9 11.6 91 15-115 9-103 (106)
8 1mzk_A Kinase associated prote 99.7 5.7E-17 2E-21 136.8 11.4 95 12-114 9-119 (139)
9 2xt9_B Putative signal transdu 99.7 1.7E-16 5.8E-21 129.7 13.4 90 14-116 15-107 (115)
10 1g6g_A Protein kinase RAD53; b 99.7 8.9E-17 3.1E-21 133.6 10.7 78 29-115 37-121 (127)
11 1gxc_A CHK2, CDS1, serine/thre 99.7 1.3E-16 4.4E-21 136.3 11.9 91 9-107 26-131 (149)
12 2kb3_A Oxoglutarate dehydrogen 99.7 2.3E-16 8E-21 134.8 12.8 88 15-115 51-141 (143)
13 2jqj_A DNA damage response pro 99.7 4.9E-16 1.7E-20 132.8 14.5 89 21-118 30-126 (151)
14 1r21_A Antigen KI-67; beta san 99.7 2E-16 6.8E-21 131.2 11.3 84 21-116 26-110 (128)
15 2jpe_A Nuclear inhibitor of pr 99.7 3.1E-17 1.1E-21 138.4 4.7 96 13-115 37-136 (140)
16 2kfu_A RV1827 PThr 22; FHA dom 99.7 7.9E-16 2.7E-20 134.5 13.2 91 14-117 59-152 (162)
17 1g3g_A Protien kinase SPK1; FH 99.7 3.8E-16 1.3E-20 135.6 10.4 93 16-117 39-151 (164)
18 3oun_A Putative uncharacterize 99.6 4.6E-16 1.6E-20 135.9 10.3 83 17-112 74-157 (157)
19 2pie_A E3 ubiquitin-protein li 99.6 4.6E-16 1.6E-20 131.2 9.2 80 18-106 16-102 (138)
20 1dmz_A Protein (protein kinase 99.6 4.2E-16 1.4E-20 134.8 9.0 88 21-116 18-125 (158)
21 1wln_A Afadin; beta sandwich, 99.6 2.9E-15 9.8E-20 123.4 11.2 87 21-117 29-117 (120)
22 4ejq_A Kinesin-like protein KI 99.6 2.6E-15 8.8E-20 129.5 11.1 89 21-116 54-146 (154)
23 2ff4_A Probable regulatory pro 99.6 4.1E-15 1.4E-19 142.7 12.7 87 19-117 297-384 (388)
24 1qu5_A Protein kinase SPK1; FH 99.6 8.2E-16 2.8E-20 136.4 7.0 88 21-116 42-149 (182)
25 2csw_A Ubiquitin ligase protei 99.6 6.7E-16 2.3E-20 131.3 5.7 76 22-106 29-110 (145)
26 3fm8_A Kinesin-like protein KI 99.6 6.7E-15 2.3E-19 123.7 11.2 82 21-114 42-124 (124)
27 3els_A PRE-mRNA leakage protei 99.6 4.3E-15 1.5E-19 129.1 10.2 86 22-112 49-156 (158)
28 3elv_A PRE-mRNA leakage protei 99.6 1E-14 3.5E-19 132.4 11.2 86 22-112 96-203 (205)
29 4egx_A Kinesin-like protein KI 99.2 6.1E-11 2.1E-15 105.4 11.6 90 21-117 84-177 (184)
30 3kt9_A Aprataxin; FHA domain, 99.2 4.6E-11 1.6E-15 97.8 9.1 83 21-113 15-98 (102)
31 3huf_A DNA repair and telomere 99.1 6.7E-11 2.3E-15 113.7 8.0 93 21-119 14-117 (325)
32 2brf_A Bifunctional polynucleo 99.1 8.6E-11 3E-15 97.6 7.5 87 17-113 16-106 (110)
33 3uv0_A Mutator 2, isoform B; F 99.1 3E-10 1E-14 93.3 8.6 84 17-114 10-100 (102)
34 1yj5_C 5' polynucleotide kinas 99.0 9.4E-10 3.2E-14 95.2 9.8 89 17-115 16-108 (143)
35 3i6u_A CDS1, serine/threonine- 99.0 6.4E-10 2.2E-14 105.8 7.9 89 11-107 8-111 (419)
36 1ujx_A Polynucleotide kinase 3 99.0 3.7E-10 1.3E-14 95.0 4.5 89 17-115 23-115 (119)
37 4a0e_A YSCD, type III secretio 98.9 6.6E-09 2.2E-13 87.8 11.8 95 13-120 7-104 (123)
38 1wv3_A Similar to DNA segregat 98.3 6.7E-07 2.3E-11 81.8 7.0 80 22-115 86-170 (238)
39 1p9k_A ORF, hypothetical prote 51.4 9.9 0.00034 28.2 2.8 32 78-111 46-77 (79)
40 2q5w_D Molybdopterin convertin 47.6 17 0.00057 26.3 3.5 23 79-104 48-70 (77)
41 3hvz_A Uncharacterized protein 44.6 18 0.0006 27.6 3.3 23 79-104 43-65 (78)
42 2hj1_A Hypothetical protein; s 43.6 11 0.00037 30.1 2.0 26 77-105 58-83 (97)
43 3po0_A Small archaeal modifier 43.3 20 0.00069 26.7 3.5 23 79-104 60-82 (89)
44 1m3w_A H10H24; four-helix bund 40.2 7.4 0.00025 25.2 0.4 20 241-263 1-20 (32)
45 3rpf_C Molybdopterin convertin 39.3 20 0.00067 26.2 2.8 24 79-104 44-67 (74)
46 1fm0_D Molybdopterin convertin 39.2 27 0.00092 25.4 3.5 22 80-104 53-74 (81)
47 3ega_A Pellino-2, protein pell 39.1 63 0.0022 30.3 6.7 21 94-114 226-246 (263)
48 2cu3_A Unknown function protei 37.2 23 0.00079 25.2 2.8 25 80-104 32-57 (64)
49 1ryj_A Unknown; beta/alpha pro 36.0 32 0.0011 25.0 3.5 22 80-104 42-63 (70)
50 2k6p_A Uncharacterized protein 35.8 30 0.001 26.0 3.4 24 79-105 27-50 (92)
51 1rws_A Hypothetical protein PF 34.6 17 0.0006 26.9 1.8 23 79-104 48-70 (77)
52 1wv3_A Similar to DNA segregat 33.8 80 0.0027 28.2 6.4 42 20-72 12-54 (238)
53 1vjk_A Molybdopterin convertin 32.4 26 0.0009 26.9 2.6 22 80-104 70-91 (98)
54 1tyg_B YJBS; alpha beta barrel 31.2 31 0.001 26.8 2.8 25 80-104 55-80 (87)
55 2k5p_A THis protein, thiamine- 29.0 25 0.00087 26.5 1.9 25 80-104 37-62 (78)
56 1f0z_A THis protein; ubiquitin 28.5 26 0.00088 25.0 1.8 25 80-104 34-59 (66)
57 2kl0_A Putative thiamin biosyn 28.1 22 0.00075 26.5 1.4 25 80-104 33-58 (73)
58 1dm9_A Hypothetical 15.5 KD pr 27.5 53 0.0018 27.0 3.8 24 79-105 35-58 (133)
59 3dwg_C 9.5 kDa culture filtrat 24.8 40 0.0014 25.3 2.4 25 80-104 61-86 (93)
60 1ygs_A SMAD4; tumor suppressor 24.0 3.4E+02 0.011 24.7 8.8 80 22-103 20-118 (234)
61 1wgk_A Riken cDNA 2900073H19 p 23.6 21 0.00073 28.9 0.6 24 80-104 76-101 (114)
62 2kmm_A Guanosine-3',5'-BIS(dip 22.6 65 0.0022 22.7 3.0 22 80-104 39-60 (73)
63 2g1e_A Hypothetical protein TA 22.5 40 0.0014 24.8 1.9 25 80-104 58-83 (90)
64 3u7z_A Putative metal binding 22.3 53 0.0018 26.4 2.7 25 80-104 71-95 (101)
65 2kpm_A Uncharacterized protein 22.1 2.9E+02 0.01 22.2 7.1 69 228-314 21-89 (105)
66 2daw_A RWD domain containing p 21.9 73 0.0025 26.5 3.6 28 217-250 13-40 (154)
67 2l52_A Methanosarcina acetivor 21.4 36 0.0012 26.3 1.5 28 77-104 64-92 (99)
No 1
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.76 E-value=3.3e-18 Score=144.55 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=79.5
Q ss_pred EEEEecCc---eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEE--
Q 020578 13 FAKLQGED---FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVL-- 86 (324)
Q Consensus 13 yAkL~G~~---~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~-- 86 (324)
+.++.|.. ..|.|....++|||.++ +||.| ++..|||+||+|.++..++.|+|+|+ |+|||||||++
T Consensus 27 L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i~ 99 (132)
T 3va4_A 27 LRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVAL----PFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRV 99 (132)
T ss_dssp EEECCBTTBSCEEEEECSEEEEEESSTT---SSEEC----CCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTEE
T ss_pred EEEEeCCCCCceEEEECCCCEEEccCCC---CCEEe----CCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEcc
Confidence 33445544 68999998999999987 57777 67899999999999755678999998 69999999987
Q ss_pred eCCCCCCeecCCCCEEEeCCeEEEEEecCc
Q 020578 87 HLPGNPPVKLDSQDLLQIGDKEFYFLLPVR 116 (324)
Q Consensus 87 i~pG~~pv~L~~GDlIqIG~t~f~Fllp~~ 116 (324)
+.++. ++.|++||+|+||++.|.|.....
T Consensus 100 l~~~~-~~~L~~GD~I~lG~~~l~f~~~~~ 128 (132)
T 3va4_A 100 LPPGV-SHRLRDQELILFADFPCQYHRLDV 128 (132)
T ss_dssp ECTTC-CEECCTTCEEEETTEEEEEEECCC
T ss_pred cCCCC-EEECCCCCEEEECCEEEEEEECCC
Confidence 55554 689999999999999999986543
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=138.73 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=73.4
Q ss_pred EEEEecCc--eEEEeec-CeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEe---------cCCCeEEEEeC-CCCc
Q 020578 13 FAKLQGED--FEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYD---------FTRRRFALEVL-GKNG 79 (324)
Q Consensus 13 yAkL~G~~--~ey~L~~-~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd---------~~~~~F~LedL-SkNG 79 (324)
+.++.|.. .++.|.. ..++|||+++ |||.| ++..|||+||+|.|. ...+.|+|.|+ |+||
T Consensus 23 L~v~k~g~~~~~~~L~~~~~~~IGR~~~---~di~l----~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNG 95 (130)
T 4h87_A 23 LETLKGGTILGTRSLKGTSYCLFGRLSG---CDVCL----EHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHG 95 (130)
T ss_dssp EEEEETTEEEEEEECTTCSEEEEESSTT---SSEEC----CCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSC
T ss_pred EEEEECCeeeeeEEeCCCceEEEcCCcC---CCEEe----CCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCc
Confidence 44566654 3578865 4589999987 67888 688999999999873 23568999997 6999
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLL 113 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~Fll 113 (324)
|||||+++.++. +++|++||+|+||.....|++
T Consensus 96 T~vNg~ri~~~~-~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 96 TFLNKTRIPPRT-YCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp EEETTEECCTTC-CEECCTTCEEEETTCSEEEEE
T ss_pred eEECCEECCCCc-eeECCCCCEEEECCceEEEEE
Confidence 999999998765 789999999999987766765
No 3
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.73 E-value=2.4e-17 Score=131.31 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=74.8
Q ss_pred ecCceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCee
Q 020578 17 QGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVK 95 (324)
Q Consensus 17 ~G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~ 95 (324)
.|....|.+.+..++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++. +++
T Consensus 12 ~g~g~~~~l~~~~~~IGR~~~---~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~----~~~ 78 (100)
T 3po8_A 12 DGSGRTYQLREGSNIIGRGQD---AQFRL----PDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAPVQ----EWQ 78 (100)
T ss_dssp SSSCCEEECCSEEEEEESSTT---CSEEC----CCTTSCSSCEEEEEC--SSCEEEEECSCSSCCEETTEECS----EEE
T ss_pred CCCCcEEEECCCCEEEeCCCC---CCEEC----CCCCcChhhCEEEEe--CCEEEEEECCCCCCEEECCEECc----eEE
Confidence 455678999998999999886 67887 578999999999996 478999998 6999999999995 489
Q ss_pred cCCCCEEEeCCeEEEEEec
Q 020578 96 LDSQDLLQIGDKEFYFLLP 114 (324)
Q Consensus 96 L~~GDlIqIG~t~f~Fllp 114 (324)
|++||+|+||.+.|.|.+.
T Consensus 79 L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 79 LADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp CCTTCEEEETTEEEEEEEE
T ss_pred CCCCCEEEECCEEEEEEEE
Confidence 9999999999999999875
No 4
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.72 E-value=1.8e-17 Score=135.66 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=70.0
Q ss_pred eEEEeec-CeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCeecCC
Q 020578 21 FEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDS 98 (324)
Q Consensus 21 ~ey~L~~-~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~L~~ 98 (324)
..|.|.. ..++|||.+.. +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.++. ++.|++
T Consensus 25 ~~~~l~~~~~~~iGR~~~~--~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGT~vng~~l~~~~-~~~L~~ 95 (118)
T 1uht_A 25 DALDYKPGSTIRVGRIVRG--NEIAI----KDAGISTKHLRIESD--SGNWVIQDLGSSNGTLLNSNALDPET-SVNLGD 95 (118)
T ss_dssp CBCCBCTTCCEEEESSSTT--CSEEC----CSSSSCTTCEEEEEC--SSSEEEECCCCSSCCEESSSBCCTTC-EEECCT
T ss_pred cEEEECCCCEEEEcCCCCC--CCEEe----CCCCCchHHeEEEEE--CCEEEEEECCCCCCeEECCEECCCCC-eEEcCC
Confidence 4678875 57999999432 56777 689999999999996 478999999 6999999999998764 689999
Q ss_pred CCEEEeCCeEEEEE
Q 020578 99 QDLLQIGDKEFYFL 112 (324)
Q Consensus 99 GDlIqIG~t~f~Fl 112 (324)
||+|+||.+.|.|+
T Consensus 96 gd~i~lG~~~~~~~ 109 (118)
T 1uht_A 96 GDVIKLGEYTSILV 109 (118)
T ss_dssp TEEEEETTTEEEEE
T ss_pred CCEEEECCeEEEEE
Confidence 99999999886654
No 5
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.71 E-value=4.7e-17 Score=136.85 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCCCCCCccceEEEEecCc--eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC-C--eEEEEeC
Q 020578 1 MGTISGNDVEAGFAKLQGED--FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-R--RFALEVL 75 (324)
Q Consensus 1 ~~~~~~~~~~~ayAkL~G~~--~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~-~--~F~LedL 75 (324)
|++.+......++..+.+.. ..|.+.+..++|||.++ +||.| ++..|||+||+|.++... + .|+|+|+
T Consensus 1 m~~p~~~p~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl 73 (131)
T 3hx1_A 1 MSDPSAKPLQEHILIILDDAGRREVLLTETFYTIGRSPR---ADIRI----KSQFVSRIHAVLVRKSSDDVQAAYRIIDG 73 (131)
T ss_dssp --------CCEEEEEEEETTEEEEEEECSSEEEEESSTT---SSEEC----CCSSSCTTCEEEEEC------CCEEEEES
T ss_pred CCCCCCCCCcceEEEEECCCCcEEEEECCCCEEECCCCC---CCEEE----CCCCcChhheEEEEEccCCCceEEEEEEC
Confidence 55555555666777777653 57999999999999987 57777 678999999999996422 2 5999998
Q ss_pred ------CCCceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEE
Q 020578 76 ------GKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFL 112 (324)
Q Consensus 76 ------SkNGTfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~Fl 112 (324)
|+|||||||+++. .+.|.+||+|+||.+.|.|.
T Consensus 74 ~~~~~~S~NGT~vNg~~i~----~~~L~~GD~I~iG~~~~~~~ 112 (131)
T 3hx1_A 74 DEDGQSSVNGLMINGKKVQ----EHIIQTGDEIVMGPQVSVRY 112 (131)
T ss_dssp CTTSCCCSSCEEETTEEES----EEECCTTCEEECSTTCEEEE
T ss_pred CCCCCCCCCceEECCEEeE----eEECCCCCEEEECCEEEEEE
Confidence 8999999999996 37999999999998766544
No 6
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.71 E-value=2.4e-17 Score=134.21 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=77.6
Q ss_pred eEEEEecC-----ceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEE
Q 020578 12 GFAKLQGE-----DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVL 86 (324)
Q Consensus 12 ayAkL~G~-----~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~ 86 (324)
++++|... ...|.|....++|||++. +||.| .++..|||+||+|.++..++.|+|+|.|+|||||||++
T Consensus 3 ~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~---~di~l---~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~ 76 (116)
T 1lgp_A 3 PWGRLLRLGAEEGEPHVLLRKREWTIGRRRG---CDLSF---PSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLK 76 (116)
T ss_dssp CCEEECCTTCCSSSCCEEECSSEEEEESSTT---SSEEC---TTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCC
T ss_pred CEEEEEEeCCCCCccEEEECCCCEEECCCCC---CCEEe---CCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEE
Confidence 45666432 246889999999999997 57777 23469999999999975468999999889999999999
Q ss_pred eCCCCCCeecCCCCEEEeCCe------EEEEEecC
Q 020578 87 HLPGNPPVKLDSQDLLQIGDK------EFYFLLPV 115 (324)
Q Consensus 87 i~pG~~pv~L~~GDlIqIG~t------~f~Fllp~ 115 (324)
+.++. +++|.+||+|+||.. .+.|++..
T Consensus 77 l~~~~-~~~L~~GD~i~~G~~~~~~~~~~~f~f~~ 110 (116)
T 1lgp_A 77 VVKKQ-TCPLQTGDVIYLVYRKNEPEHNVAYLYES 110 (116)
T ss_dssp CCCSS-CCCCCTTCEEEEECCSSCGGGCEEEECCC
T ss_pred cCCCC-cEECCCCCEEEEeccCCCCCceEEEEEEc
Confidence 98765 689999999999975 45565543
No 7
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.71 E-value=7.4e-17 Score=129.91 Aligned_cols=91 Identities=27% Similarity=0.417 Sum_probs=74.0
Q ss_pred EEecC--ceEEEeecC-eEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCC
Q 020578 15 KLQGE--DFEYYMQTY-SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (324)
Q Consensus 15 kL~G~--~~ey~L~~~-sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG 90 (324)
.+.|. ...|.|... .++|||.+.. +||.| ++..|||+||+|.++. ++.|+|+|+ |+|||||||+++.+
T Consensus 9 v~~G~~~g~~~~l~~~~~~~iGR~~~~--~di~l----~d~~vSr~Ha~i~~~~-~~~~~l~Dl~S~nGt~vng~~i~~- 80 (106)
T 3gqs_A 9 VLAGANIGAEFHLDSGKTYIVGSDPQV--ADIVL----SDMSISRQHAKIIIGN-DNSVLIEDLGSKNGVIVEGRKIEH- 80 (106)
T ss_dssp ECC-CCTTCEEEECTTCEEEEESCTTT--CSEEC----CCTTSCSSCEEEEECT-TSCEEEEECSCSSCCEETTEECSS-
T ss_pred EEeCCCCcEEEEECCCCEEEEeECCCc--CCEEe----CCCCcchhhcEEEECC-CCcEEEEECcCCCCeEECCEECCC-
Confidence 34454 257888864 6899999832 56777 5789999999999973 467999998 69999999999964
Q ss_pred CCCeecCCCCEEEeCCeEEEEEecC
Q 020578 91 NPPVKLDSQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~t~f~Fllp~ 115 (324)
++.|++||+|+||.+.|.|..+.
T Consensus 81 --~~~L~~Gd~i~~G~~~~~~~~~~ 103 (106)
T 3gqs_A 81 --QSTLSANQVVALGTTLFLLVDYA 103 (106)
T ss_dssp --EEECCTTCCEEETTEEEEEEEEC
T ss_pred --CeECCCCCEEEECCEEEEEEccC
Confidence 47999999999999999998654
No 8
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.70 E-value=5.7e-17 Score=136.84 Aligned_cols=95 Identities=25% Similarity=0.391 Sum_probs=77.5
Q ss_pred eEEEEecCc--eEEEeecC-----eEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEc
Q 020578 12 GFAKLQGED--FEYYMQTY-----SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVE 83 (324)
Q Consensus 12 ayAkL~G~~--~ey~L~~~-----sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVN 83 (324)
.+.++.|.. ..|.|... .++|||.++ +||.| ++..|||+||+|.++..++.|+|+|+ |+||||||
T Consensus 9 ~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vN 81 (139)
T 1mzk_A 9 FLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSP---SDLAL----KDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVN 81 (139)
T ss_dssp EEEECSSTTCSCEEEECTTCSTTCSEEEESSSS---CSEEC----CCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEET
T ss_pred EEEEEeCCCCCeEEEecCCCCccceEEeeCCCC---CCEEe----CCCCCChHHcEEEEECCCCEEEEEECCCCCCEEEC
Confidence 344455543 47888764 799999987 56777 57899999999999864458999999 69999999
Q ss_pred CEEeCC--------CCCCeecCCCCEEEeCCeEEEEEec
Q 020578 84 GVLHLP--------GNPPVKLDSQDLLQIGDKEFYFLLP 114 (324)
Q Consensus 84 G~~i~p--------G~~pv~L~~GDlIqIG~t~f~Fllp 114 (324)
|+++.+ +. ++.|++||+|+||.+.|.|...
T Consensus 82 g~~i~~~~~~~~~~~~-~~~L~~GD~I~iG~~~~~~~~~ 119 (139)
T 1mzk_A 82 SHSISHPDLGSRKWGN-PVELASDDIITLGTTTKVYVRI 119 (139)
T ss_dssp TEESSCCCTTTCCCCC-CEECCTTEEEECSSSCEEEEEE
T ss_pred CEECcCcccccccCCc-eEECCCCCEEEECCEEEEEEEc
Confidence 999974 33 6999999999999999988654
No 9
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.70 E-value=1.7e-16 Score=129.68 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=75.3
Q ss_pred EEEecC--ceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCC
Q 020578 14 AKLQGE--DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (324)
Q Consensus 14 AkL~G~--~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG 90 (324)
.++.|. ...|.|.+..++|||.+. +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.
T Consensus 15 ~v~~g~~~g~~~~l~~~~~~IGR~~~---~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~-- 83 (115)
T 2xt9_B 15 VVKRGPNAGSRFLLDQPTTSAGRHPD---SDIFL----DDVTVSRRHAEFRLE--GGEFQVVDVGSLNGTYVNREPVD-- 83 (115)
T ss_dssp EEEESTTTTCEEEECSSEEEEESSTT---SSEEC----CSTTSCSSCEEEEEE--TTEEEEEECSCSSCEEETTEECS--
T ss_pred EEEeCCCCCeEEEECCCCEEECCCCC---CCEEe----CCcccChhheEEEEE--CCEEEEEECCCCCCeEECCEEcc--
Confidence 334554 357999988999999987 57877 578999999999997 589999998 6999999999996
Q ss_pred CCCeecCCCCEEEeCCeEEEEEecCc
Q 020578 91 NPPVKLDSQDLLQIGDKEFYFLLPVR 116 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~t~f~Fllp~~ 116 (324)
++.|++||+|+||.+.|.|..+..
T Consensus 84 --~~~L~~gd~i~iG~~~l~~~~~~~ 107 (115)
T 2xt9_B 84 --SAVLANGDEVQIGKFRLVFLTGPK 107 (115)
T ss_dssp --EEEECTTCEEEETTEEEEEEC---
T ss_pred --eEECCCCCEEEECCEEEEEEeCCC
Confidence 479999999999999999986543
No 10
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.69 E-value=8.9e-17 Score=133.60 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCceeeecCCCCCCC-cccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCCCEEEeCCe
Q 020578 29 SIILGRNSKKSTVDVDLSSLGGGM-NISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDK 107 (324)
Q Consensus 29 sItIGR~s~~~~VDIDLs~lg~d~-~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~GDlIqIG~t 107 (324)
.++|||++. +||.| ++. .|||+||+|.++. ++.|+|+|+|+|||||||+++.++. ++.|.+||+|+||.+
T Consensus 37 ~~~IGR~~~---~di~l----~~~~~vSr~Ha~i~~~~-~g~~~l~DlS~NGT~vNg~~l~~~~-~~~L~~Gd~I~lG~~ 107 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHL----GNISRLSNKHFQILLGE-DGNLLLNDISTNGTWLNGQKVEKNS-NQLLSQGDEITVGVG 107 (127)
T ss_dssp EEEEESSTT---SSEEC----CSCTTSCSSCEEEEECT-TSCEEEEECCSSCCEETTEECCTTC-CEECCTTCEEEECTT
T ss_pred CEEECCCCC---CCEEe----CCCCCCChhHeEEEECC-CCcEEEEECCcCCeEECCEEcCCCC-eEEcCCCCEEEECCC
Confidence 899999997 57777 344 6999999999963 5789999999999999999998765 799999999999985
Q ss_pred ------EEEEEecC
Q 020578 108 ------EFYFLLPV 115 (324)
Q Consensus 108 ------~f~Fllp~ 115 (324)
.|.|.+|.
T Consensus 108 ~~~~~i~f~~~~~~ 121 (127)
T 1g6g_A 108 VESDILSLVIFIND 121 (127)
T ss_dssp SGGGCEEEEEEECH
T ss_pred ccCceEEEEEEeCc
Confidence 58888764
No 11
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.69 E-value=1.3e-16 Score=136.26 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=72.0
Q ss_pred ccceEEEEe---cCceEEEeecCeEEEcCCCCCCceeeecCCCCCCC---------cccccceEEEEecCC---CeEEEE
Q 020578 9 VEAGFAKLQ---GEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGM---------NISRHHARIFYDFTR---RRFALE 73 (324)
Q Consensus 9 ~~~ayAkL~---G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~---------~ISR~HA~I~yd~~~---~~F~Le 73 (324)
....++.|. +....|.|.+..++|||.+. +||.| ++. .|||+||+|.++... ..|+|+
T Consensus 26 ~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~---~di~l----~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~ 98 (149)
T 1gxc_A 26 TPAPWARLWALQDGFANLECVNDNYWFGRDKS---CEYCF----DEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIE 98 (149)
T ss_dssp ---CCEEEEECSTTCCCEEECSSEEEEESSTT---CSEEC----CCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCeeEEEEEcCCCCceEEECCCCEEecCCCC---CCEEE----CCccccccccCCcCchhheEEEEECCCCceeEEEEE
Confidence 344567765 33346899999999999986 56776 333 599999999998521 189999
Q ss_pred eCCCCceEEcCEEeCCCCCCeecCCCCEEEeCCe
Q 020578 74 VLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDK 107 (324)
Q Consensus 74 dLSkNGTfVNG~~i~pG~~pv~L~~GDlIqIG~t 107 (324)
|+|+|||||||+++.++. ++.|++||+|+||..
T Consensus 99 D~StNGT~VNg~~i~~~~-~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 99 DHSGNGTFVNTELVGKGK-RRPLNNNSEIALSLS 131 (149)
T ss_dssp ECCSSCEEETTEECCTTC-EEECCTTEEEEESST
T ss_pred ECCCCCeEECCEECCCCC-eEECCCCCEEEECCC
Confidence 999999999999998876 699999999999984
No 12
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.68 E-value=2.3e-16 Score=134.80 Aligned_cols=88 Identities=22% Similarity=0.335 Sum_probs=75.7
Q ss_pred EEecC--ceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCC
Q 020578 15 KLQGE--DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGN 91 (324)
Q Consensus 15 kL~G~--~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~ 91 (324)
++.|. ...|.|.+..++|||.+. +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.
T Consensus 51 v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~--~~~~~l~DlgS~NGT~VNg~~i~--- 118 (143)
T 2kb3_A 51 VKRGPNAGARFLLDQPTTTAGRHPE---SDIFL----DDVTVSRRHAEFRIN--EGEFEVVDVGSLNGTYVNREPRN--- 118 (143)
T ss_dssp EEESTTTTCEEEECSSEEEESSCTT---CSBCC----CCSSCCSSSEEEEEE--TTEEEEEESCCSSCCEETTEECS---
T ss_pred EEeCCCCCeEEEeCCCCeeccCCCC---CCEEe----CCCCcChhhEEEEEE--CCEEEEEECCCcCCeEECCEEcc---
Confidence 34453 357999988999999987 56777 579999999999996 589999998 6999999999996
Q ss_pred CCeecCCCCEEEeCCeEEEEEecC
Q 020578 92 PPVKLDSQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 92 ~pv~L~~GDlIqIG~t~f~Fllp~ 115 (324)
++.|++||+|+||.+.|.|..+.
T Consensus 119 -~~~L~~GD~I~iG~~~l~f~~~~ 141 (143)
T 2kb3_A 119 -AQVMQTGDEIQIGKFRLVFLAGP 141 (143)
T ss_dssp -EEECCTTEEEEETTEEEEEEECC
T ss_pred -eEECCCCCEEEECCEEEEEEeCC
Confidence 47999999999999999998654
No 13
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.68 E-value=4.9e-16 Score=132.80 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=74.4
Q ss_pred eEEEee-cCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEec------CCCeEEEEeCCCCceEEcCEEeCCCCCC
Q 020578 21 FEYYMQ-TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDF------TRRRFALEVLGKNGCFVEGVLHLPGNPP 93 (324)
Q Consensus 21 ~ey~L~-~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~------~~~~F~LedLSkNGTfVNG~~i~pG~~p 93 (324)
..|.|. +..++|||.+. +||.| ++..|||+||+|.++. .++.|+|+|+|+|||||||+++.++ +
T Consensus 30 ~~~~l~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~VNg~~i~~~--~ 100 (151)
T 2jqj_A 30 QKVEITNRNVTTIGRSRS---CDVIL----SEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKK--D 100 (151)
T ss_dssp EEEEEECCSCEEEESSTT---SSEEC----CCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEETTEECCSS--C
T ss_pred eEEEEcCCCeEEeCCCCC---CCEEE----CCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEECCEEcCCC--c
Confidence 468887 47899999986 67888 5789999999999931 2478999999999999999999765 6
Q ss_pred eecCCCCEEEeCC-eEEEEEecCccc
Q 020578 94 VKLDSQDLLQIGD-KEFYFLLPVRSI 118 (324)
Q Consensus 94 v~L~~GDlIqIG~-t~f~Fllp~~si 118 (324)
+.|.+||+|+||. ..|.|.+.....
T Consensus 101 ~~L~~GD~I~lG~~~~~~f~~~~~~~ 126 (151)
T 2jqj_A 101 YILKNGDRIVFGKSCSFLFKYASSSS 126 (151)
T ss_dssp EEECSSEEEEETTTEEEEEEECSSCC
T ss_pred eECCCCCEEEECCCcEEEEEEcCCCc
Confidence 8999999999998 478887765543
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.68 E-value=2e-16 Score=131.25 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=73.0
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCeecCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQ 99 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~L~~G 99 (324)
..|.|....++|||+++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.. ++.|.+|
T Consensus 26 ~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vNg~~i~~---~~~L~~G 93 (128)
T 1r21_A 26 PHFPLSLSTCLFGRGIE---CDIRI----QLPVVSKQHCKIEIH--EQEAILHNFSSTNPTQVNGSVIDE---PVRLKHG 93 (128)
T ss_dssp EEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC--SSCEEECCCCSSSCCEETTEECSS---CEECCTT
T ss_pred eEEEECCCCEEECCCCC---CCEEE----CCCCCChhHEEEEEE--CCEEEEEECCCCCCEEECCEECCC---cEEcCCC
Confidence 46999888999999987 57877 578999999999996 489999998 59999999999962 6899999
Q ss_pred CEEEeCCeEEEEEecCc
Q 020578 100 DLLQIGDKEFYFLLPVR 116 (324)
Q Consensus 100 DlIqIG~t~f~Fllp~~ 116 (324)
|+|+||.+.|.|..+..
T Consensus 94 d~i~iG~~~~~~~~~~~ 110 (128)
T 1r21_A 94 DVITIIDRSFRYENESL 110 (128)
T ss_dssp EEEECSSCEEEEEEC--
T ss_pred CEEEECCEEEEEEeCCc
Confidence 99999999999987643
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.66 E-value=3.1e-17 Score=138.42 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=78.4
Q ss_pred EEEEecCc--eEEEeecC-eEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeC
Q 020578 13 FAKLQGED--FEYYMQTY-SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHL 88 (324)
Q Consensus 13 yAkL~G~~--~ey~L~~~-sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~ 88 (324)
+.++.|.. ..|.|... .++|||+++. +||.| ++..|||+||+|.++..++.|+|+|+ |+|||||||+++.
T Consensus 37 L~v~~g~~~g~~~~l~~~~~~~IGR~~~~--~di~l----~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~ 110 (140)
T 2jpe_A 37 LDVVKGDKLIEKLIIDEKKYYLFGRNPDL--CDFTI----DHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLE 110 (140)
T ss_dssp EEEESSSSEEEEECCSSCSBCCBSSCTTT--SSSCC----CCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEEC
T ss_pred EEEEcCCCcceEEEeCCCCeEEecCCCcc--CCEEe----CCCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECC
Confidence 44556654 36888875 5999999873 45766 57899999999999854579999997 7999999999998
Q ss_pred CCCCCeecCCCCEEEeCCeEEEEEecC
Q 020578 89 PGNPPVKLDSQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 89 pG~~pv~L~~GDlIqIG~t~f~Fllp~ 115 (324)
++. ++.|.+||+|+||.+.+.|.+..
T Consensus 111 ~~~-~~~L~~gd~i~~G~~~~~f~~~~ 136 (140)
T 2jpe_A 111 PHK-PQQIPIDSTVSFGASTRAYTLRE 136 (140)
T ss_dssp SSS-CCEECTTCCBBCSSCCCCBCCBC
T ss_pred CCc-cEECCCCCEEEECCceEEEEEec
Confidence 765 68999999999999988886643
No 16
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.66 E-value=7.9e-16 Score=134.49 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=77.3
Q ss_pred EEEecC--ceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCC
Q 020578 14 AKLQGE--DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (324)
Q Consensus 14 AkL~G~--~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG 90 (324)
.++.|. ...|.|.+..++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.
T Consensus 59 ~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~I~~~--~~~~~l~DlgS~NGT~VNg~~i~-- 127 (162)
T 2kfu_A 59 VVKRGPNAGSRFLLDQAITSAGRHPD---SDIFL----DDVTVSRRHAEFRLE--NNEFNVVDVGSLNGTYVNREPVD-- 127 (162)
T ss_dssp EEEESTTCSCEEETTSSEEEEESCSS---SSEES----TTTSSSSCSEEEEEE--TTEEEEECCCCSSCEEETTBCCS--
T ss_pred EEEeCCCCCeEEEECCCCEEECCCCC---CCEEE----CCCCcChhhEEEEEE--CCEEEEEECCCCCCeEECCEEcc--
Confidence 334554 357999999999999987 67888 578999999999996 589999998 6999999999985
Q ss_pred CCCeecCCCCEEEeCCeEEEEEecCcc
Q 020578 91 NPPVKLDSQDLLQIGDKEFYFLLPVRS 117 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~t~f~Fllp~~s 117 (324)
++.|++||+|+||.+.|.|..+.+.
T Consensus 128 --~~~L~~GD~I~iG~~~l~f~~~~~~ 152 (162)
T 2kfu_A 128 --SAVLANGDEVQIGKFRLVFLTGPKQ 152 (162)
T ss_dssp --EEECCSSCEEEETTEEEEEECSCSS
T ss_pred --eEECCCCCEEEECCEEEEEEeCCcc
Confidence 4799999999999999999865533
No 17
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.65 E-value=3.8e-16 Score=135.59 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=75.4
Q ss_pred EecCc--eEEEeecC-----------eEEEcCCCCCCceeeecCCCCCCC-cccccceEEEEecCCCeEEEEeCCCCceE
Q 020578 16 LQGED--FEYYMQTY-----------SIILGRNSKKSTVDVDLSSLGGGM-NISRHHARIFYDFTRRRFALEVLGKNGCF 81 (324)
Q Consensus 16 L~G~~--~ey~L~~~-----------sItIGR~s~~~~VDIDLs~lg~d~-~ISR~HA~I~yd~~~~~F~LedLSkNGTf 81 (324)
+.|.. ..|.+... .++|||+++ +||.| ++. .|||+||+|.++. ++.|+|+|+|+||||
T Consensus 39 ~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~---~di~l----~d~~~vSr~Ha~I~~~~-~g~~~l~DlS~NGT~ 110 (164)
T 1g3g_A 39 TTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPA---CDYHL----GNISRLSNKHFQILLGE-DGNLLLNDISTNGTW 110 (164)
T ss_dssp SSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSS---SSEEC----CCCTTTTSSCEEEEECS-TTCEEEEECCSSCEE
T ss_pred ecCCCCCeEEEeccccccccccccCCcEEECCCCC---CCEEe----CCcCCcChhHEEEEECC-CCCEEEEECCCCCeE
Confidence 44543 46777643 889999987 57877 344 7999999999963 578999999999999
Q ss_pred EcCEEeCCCCCCeecCCCCEEEeCCe------EEEEEecCcc
Q 020578 82 VEGVLHLPGNPPVKLDSQDLLQIGDK------EFYFLLPVRS 117 (324)
Q Consensus 82 VNG~~i~pG~~pv~L~~GDlIqIG~t------~f~Fllp~~s 117 (324)
|||+++.++. ++.|.+||+|+||.. .|.|.+|...
T Consensus 111 vNg~~i~~~~-~~~L~~GD~I~iG~~~~~~~~~f~~~~~~~~ 151 (164)
T 1g3g_A 111 LNGQKVEKNS-NQLLSQGDEITVGVGVESDILSLVIFINDKF 151 (164)
T ss_dssp ETTEEECTTE-EEECCTTCEEEESCSSTTSCEEEEEEECHHH
T ss_pred ECCEEcCCCC-ceEcCCCCEEEECCCCCCCcEEEEEEeCchh
Confidence 9999998764 689999999999986 7888877543
No 18
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.65 E-value=4.6e-16 Score=135.85 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=72.8
Q ss_pred ecCceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCee
Q 020578 17 QGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVK 95 (324)
Q Consensus 17 ~G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~ 95 (324)
.|....|.|....++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++. +++
T Consensus 74 ~g~g~~~~L~~~~~~IGR~~~---~dI~L----~d~~VSr~HA~I~~~--~~~~~l~DlgStNGT~VNG~~i~----~~~ 140 (157)
T 3oun_A 74 DGSGRTYQLREGSNIIGRGQD---AQFRL----PDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAPVQ----EWQ 140 (157)
T ss_dssp TTTCCEEECCSEEEEEESSTT---CSEEC----CCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEECS----EEE
T ss_pred CCCCeEEEECCCcEEEEeCCC---CCEEe----CCCCcChhHEEEEEE--CCEEEEEECCCCCCeEECCEECc----eEE
Confidence 355578999998999999886 57877 678999999999996 478999998 6999999999995 489
Q ss_pred cCCCCEEEeCCeEEEEE
Q 020578 96 LDSQDLLQIGDKEFYFL 112 (324)
Q Consensus 96 L~~GDlIqIG~t~f~Fl 112 (324)
|.+||+|+||.+.|.|.
T Consensus 141 L~~GD~I~lG~~~l~fr 157 (157)
T 3oun_A 141 LADGDVIRLGHSEIIVR 157 (157)
T ss_dssp CCTTCEEEETTEEEEEC
T ss_pred CCCCCEEEECCEEEEEC
Confidence 99999999999999883
No 19
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.64 E-value=4.6e-16 Score=131.16 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=67.0
Q ss_pred cCc-eEEEee-cCeEEEcCCCCCCceeeecCCCCCCCc----ccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCC
Q 020578 18 GED-FEYYMQ-TYSIILGRNSKKSTVDVDLSSLGGGMN----ISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (324)
Q Consensus 18 G~~-~ey~L~-~~sItIGR~s~~~~VDIDLs~lg~d~~----ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG 90 (324)
|.. ..|.+. ...++|||++. +||.| ++.. |||+||+|.++. ++.|+|+|+ |+|||||||+++.++
T Consensus 16 G~~~~~~~l~~~~~~~IGR~~~---~di~l----~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~~l~~~ 87 (138)
T 2pie_A 16 GMSAGWLLLEDGCEVTVGRGFG---VTYQL----VSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRARLEPL 87 (138)
T ss_dssp TCSSCBEEECTTCCEEEESSSS---SSEEC----CCSSCTTSSCSSCEEEEECT-TSCEEEEECSCSSCEEETTEECCTT
T ss_pred CCCCCEEEecCCCeEEECCCCC---CCEEe----CCCCcCCCCChhHeEEEEcC-CCcEEEEECCCCCCeEECCEEcCCC
Confidence 443 468886 67899999996 56777 3444 999999999963 578999998 799999999999876
Q ss_pred CCCeecCCCCEEEeCC
Q 020578 91 NPPVKLDSQDLLQIGD 106 (324)
Q Consensus 91 ~~pv~L~~GDlIqIG~ 106 (324)
. ++.|.+||+|+||.
T Consensus 88 ~-~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 88 R-VYSIHQGDYIQLGV 102 (138)
T ss_dssp C-CEECCTTCEEEESC
T ss_pred C-cEECCCCCEEEECC
Confidence 5 79999999999998
No 20
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.64 E-value=4.2e-16 Score=134.77 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=73.5
Q ss_pred eEEEeecCe--EEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC-------------CeEEEEeCCCCceEEcCE
Q 020578 21 FEYYMQTYS--IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-------------RRFALEVLGKNGCFVEGV 85 (324)
Q Consensus 21 ~ey~L~~~s--ItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~-------------~~F~LedLSkNGTfVNG~ 85 (324)
..|+|.... ++|||++. |||.| ++..|||+||+|.++... +.|+|+|+|+|||||||+
T Consensus 18 ~~i~L~~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ 90 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSED---CNCKI----EDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 90 (158)
T ss_dssp CCEEETTSCSCEEEESSTT---SSEEC----CCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEe----CCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCE
Confidence 467787555 99999986 67877 678999999999996411 689999999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe-----CCeEEEEEecCc
Q 020578 86 LHLPGNPPVKLDSQDLLQI-----GDKEFYFLLPVR 116 (324)
Q Consensus 86 ~i~pG~~pv~L~~GDlIqI-----G~t~f~Fllp~~ 116 (324)
++.++. +++|.+||+|+| |.+.|.|.+...
T Consensus 91 ri~~~~-~~~L~~GD~I~l~~d~~G~~~l~f~~~~~ 125 (158)
T 1dmz_A 91 RMIQGT-KFLLQDGDEIKIIWDKNNKFVIGFKVEIN 125 (158)
T ss_dssp ECCSSE-EEECCSSCCEESCCCTTTTCCCCEEEECS
T ss_pred EcCCCc-eEEcCCCCEEEEeecCCCCEEEEEEEEeC
Confidence 998765 689999999999 998888876443
No 21
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.61 E-value=2.9e-15 Score=123.40 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=72.6
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCC-CCceEEcCEEeCCCCCCeecCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLHLPGNPPVKLDSQ 99 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLS-kNGTfVNG~~i~pG~~pv~L~~G 99 (324)
..|.|....++|||... ..+||.| ++..|||+||+|.++ ++.|+|+|++ +|||||||+++. .++.|++|
T Consensus 29 ~~~~L~~~~~~IGr~r~-~~~di~l----~~~~vSr~Ha~i~~~--~~~~~l~dl~S~ngt~vNg~~i~---~~~~L~~G 98 (120)
T 1wln_A 29 KLYRLQLSVTEVGTEKF-DDNSIQL----FGPGIQPHHCDLTNM--DGVVTVTPRSMDAETYVDGQRIS---ETTMLQSG 98 (120)
T ss_dssp CEEECCSEEEECSSSCC-STTCCCC----CCTTCCSSCEEEEES--SSCEEEEESCSSSCEEETSCBCS---SCEEECTT
T ss_pred EEEEECCCCEEECCCCC-CCCcEEE----CCCCCchhheEEEEc--CCEEEEEECCCCCCEEECCEEcC---CCEECCCC
Confidence 46999988999997421 1367887 578999999999996 5789999995 999999999996 26899999
Q ss_pred CEEEeCC-eEEEEEecCcc
Q 020578 100 DLLQIGD-KEFYFLLPVRS 117 (324)
Q Consensus 100 DlIqIG~-t~f~Fllp~~s 117 (324)
|+|+||. ..|.|..|...
T Consensus 99 D~I~iG~~~~~~f~~p~~~ 117 (120)
T 1wln_A 99 MRLQFGTSHVFKFVDPSGP 117 (120)
T ss_dssp CEEEETTTEEEEEECSSCS
T ss_pred CEEEECCceEEEEECCccc
Confidence 9999999 88898876543
No 22
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.61 E-value=2.6e-15 Score=129.51 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=72.8
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC---CeEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR---RRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~---~~F~LedLSkNGTfVNG~~i~pG~~pv~L~ 97 (324)
.-|+|....++|||......+||.| .+..|||+||+|.++..+ ..+.+++.|+|||||||++|.. ++.|+
T Consensus 54 lvy~L~~g~t~IGR~~~~~~~DI~L----~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~---~~~L~ 126 (154)
T 4ejq_A 54 LLYYIKDGITRVGREDGERRQDIVL----SGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE---PSILR 126 (154)
T ss_dssp EEEECCSEEEEEECSSCSSCCSEEC----CCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS---CEECC
T ss_pred EEEEeCCCCEEEcCCCCCCCCCEEE----CCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC---ceECC
Confidence 4599999999999987655689999 689999999999998533 2345556789999999999942 68999
Q ss_pred CCCEEEeCCe-EEEEEecCc
Q 020578 98 SQDLLQIGDK-EFYFLLPVR 116 (324)
Q Consensus 98 ~GDlIqIG~t-~f~Fllp~~ 116 (324)
+||+|.||.+ .|.|..|..
T Consensus 127 ~GD~I~~G~~~~Frf~~P~~ 146 (154)
T 4ejq_A 127 SGNRIIMGKSHVFRFNHPEQ 146 (154)
T ss_dssp TTCEEEETTTEEEEEECHHH
T ss_pred CCCEEEECCcEEEEEcChHH
Confidence 9999999975 578877654
No 23
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.60 E-value=4.1e-15 Score=142.68 Aligned_cols=87 Identities=29% Similarity=0.406 Sum_probs=75.5
Q ss_pred CceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCeecC
Q 020578 19 EDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 19 ~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~L~ 97 (324)
....|.|....++|||+++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++. .++.|+
T Consensus 297 ~g~~~~l~~~~~~iGR~~~---~di~l----~~~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~---~~~~L~ 364 (388)
T 2ff4_A 297 SGRGYPLQAAATRIGRLHD---NDIVL----DSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHERIR---SAVTLN 364 (388)
T ss_dssp TCCEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEECS---SEEEEC
T ss_pred CCcEEEECCCCEEEecCCC---CeEEE----CCCccChhHeEEEEE--CCEEEEEECCCCCCeEECCEECC---CceECC
Confidence 3468999999999999987 57877 579999999999996 578999997 6999999999994 268999
Q ss_pred CCCEEEeCCeEEEEEecCcc
Q 020578 98 SQDLLQIGDKEFYFLLPVRS 117 (324)
Q Consensus 98 ~GDlIqIG~t~f~Fllp~~s 117 (324)
+||+|+||++.|.|..+...
T Consensus 365 ~gd~i~~G~~~~~~~~~~~~ 384 (388)
T 2ff4_A 365 DGDHIRICDHEFTFQISAGT 384 (388)
T ss_dssp TTCEEEETTEEEEEECSCCC
T ss_pred CCCEEEECCEEEEEEeCCCC
Confidence 99999999999999876543
No 24
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.60 E-value=8.2e-16 Score=136.37 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred eEEEeecCe--EEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC-------------CeEEEEeCCCCceEEcCE
Q 020578 21 FEYYMQTYS--IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-------------RRFALEVLGKNGCFVEGV 85 (324)
Q Consensus 21 ~ey~L~~~s--ItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~-------------~~F~LedLSkNGTfVNG~ 85 (324)
..|.|.... ++|||++. |||.| ++..|||+||+|.++... +.|+|.|+|+|||||||+
T Consensus 42 ~~i~L~~~~~~~~IGR~~~---~di~l----~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~ 114 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED---CNCKI----EDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 114 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT---SSSCC----CCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETTE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEE----CCCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECCE
Confidence 457777655 99999986 56777 578999999999997411 789999999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe-----CCeEEEEEecCc
Q 020578 86 LHLPGNPPVKLDSQDLLQI-----GDKEFYFLLPVR 116 (324)
Q Consensus 86 ~i~pG~~pv~L~~GDlIqI-----G~t~f~Fllp~~ 116 (324)
++.++. ++.|.+||+|+| |.+.|.|.+...
T Consensus 115 ri~~~~-~~~L~~GD~I~l~~d~~G~~~l~f~~~~~ 149 (182)
T 1qu5_A 115 RMIQGT-KFLLQDGDEIKIIWDKNNKFVIGFKVEIN 149 (182)
T ss_dssp ECCSSE-EEECCTTBCCEEEEEGGGTEEEECCEEES
T ss_pred EcCCCc-ceEcCCCCEEEEEEcCCCCEEEEEEEEeC
Confidence 998765 689999999999 999998876443
No 25
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.59 E-value=6.7e-16 Score=131.31 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=64.3
Q ss_pred EEEe-ecCeEEEcCCCCCCceeeecCCCCCCCc----ccccceEEEEecCCCeEEEEeC-CCCceEEcCEEeCCCCCCee
Q 020578 22 EYYM-QTYSIILGRNSKKSTVDVDLSSLGGGMN----ISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVK 95 (324)
Q Consensus 22 ey~L-~~~sItIGR~s~~~~VDIDLs~lg~d~~----ISR~HA~I~yd~~~~~F~LedL-SkNGTfVNG~~i~pG~~pv~ 95 (324)
.|.+ ....++|||.+. +||.| ++.. |||+||+|.++. ++.|+|+|+ |+|||||||+++.++. +++
T Consensus 29 ~~~l~~~~~~~IGR~~~---~di~l----~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~~i~~~~-~~~ 99 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGFG---VTYQL----VSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRARLEPLR-VYS 99 (145)
T ss_dssp BEECCTTCCEEEESSTT---SSEEC----CCSSCGGGSCTTCEEEEECT-TSCEEEEBSSCSSCEEESSCBCCBTC-CEE
T ss_pred eEEeCCCCcEEECCCCC---CCEEE----CCCCcCCCCChhHeEEEEcC-CCeEEEEECCCCCCeEECCEECCCCc-cEE
Confidence 4666 566899999996 56777 3454 999999999963 578999997 7999999999998765 799
Q ss_pred cCCCCEEEeCC
Q 020578 96 LDSQDLLQIGD 106 (324)
Q Consensus 96 L~~GDlIqIG~ 106 (324)
|++||+|+||.
T Consensus 100 L~~GD~I~iG~ 110 (145)
T 2csw_A 100 IHQGDYIQLGV 110 (145)
T ss_dssp CCSSCCEEESC
T ss_pred CCCCCEEEECC
Confidence 99999999998
No 26
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.59 E-value=6.7e-15 Score=123.67 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=69.3
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~GD 100 (324)
..|+|.. .++|||.++ +||.| .+..|||+||+|.++. ++.|+|+++++|||||||+++. .+++|++||
T Consensus 42 l~y~L~~-~t~IGR~~~---~DI~L----~~~~Vs~~Ha~I~~~~-~g~~~l~dl~~ngt~VNG~~V~---~~~~L~~GD 109 (124)
T 3fm8_A 42 LVYYLKE-HTLIGSANS---QDIQL----CGMGILPEHCIIDITS-EGQVMLTPQKNTRTFVNGSSVS---SPIQLHHGD 109 (124)
T ss_dssp CEEECCS-EEEEESSTT---CSEEC----CSTTCCSSCEEEEECT-TSCEEEEECTTCCEEETTEECC---SCEEECTTC
T ss_pred EEEECCC-CeEECCCCC---CCEEE----CCCCeecceEEEEECC-CCeEEEEECCCCCEEECCEEcC---CcEECCCCC
Confidence 3588876 589999987 57888 5789999999999863 5789999999999999999996 268999999
Q ss_pred EEEeCC-eEEEEEec
Q 020578 101 LLQIGD-KEFYFLLP 114 (324)
Q Consensus 101 lIqIG~-t~f~Fllp 114 (324)
+|.||. .-|.|..|
T Consensus 110 ~I~lG~~~~FrFn~P 124 (124)
T 3fm8_A 110 RILWGNNHFFRLNLP 124 (124)
T ss_dssp EEEETTTEEEEEECC
T ss_pred EEEECCCeEEEEECc
Confidence 999996 56777654
No 27
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.3e-15 Score=129.10 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=69.5
Q ss_pred EEEee-cCeEEEcCCCC------------CCceeeecCCCCCCCcccccceEEEEecCCC--eEEEEeC-CCCceEEcCE
Q 020578 22 EYYMQ-TYSIILGRNSK------------KSTVDVDLSSLGGGMNISRHHARIFYDFTRR--RFALEVL-GKNGCFVEGV 85 (324)
Q Consensus 22 ey~L~-~~sItIGR~s~------------~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~--~F~LedL-SkNGTfVNG~ 85 (324)
.|.|. +..++|||++. ...|||.| ++..|||+||+|.++...+ .|+|.|+ |+|||||||+
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l----~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ 124 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI----PEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV 124 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEE----CCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTE
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEc----CCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCE
Confidence 67776 45689999963 12378887 6789999999999985322 3999998 7999999999
Q ss_pred EeCCCCCCeecCCCCEEEeC------CeEEEEE
Q 020578 86 LHLPGNPPVKLDSQDLLQIG------DKEFYFL 112 (324)
Q Consensus 86 ~i~pG~~pv~L~~GDlIqIG------~t~f~Fl 112 (324)
++.++. +++|++||+|+|| ..+|.|+
T Consensus 125 ri~~~~-~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 125 VIPGAR-YIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp ECCTTC-CEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred EcCCCc-eEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 998765 6899999999999 5666665
No 28
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.57 E-value=1e-14 Score=132.44 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=69.9
Q ss_pred EEEee-cCeEEEcCCCC------------CCceeeecCCCCCCCcccccceEEEEecCCC--eEEEEeC-CCCceEEcCE
Q 020578 22 EYYMQ-TYSIILGRNSK------------KSTVDVDLSSLGGGMNISRHHARIFYDFTRR--RFALEVL-GKNGCFVEGV 85 (324)
Q Consensus 22 ey~L~-~~sItIGR~s~------------~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~--~F~LedL-SkNGTfVNG~ 85 (324)
.|.|. +..++|||++. ...|||.| ++..|||+||+|.+...++ .|+|.|+ |+|||||||+
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL----~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~ 171 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI----PEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV 171 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEE----CCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTE
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEe----CCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCE
Confidence 68884 56899999963 23478888 6889999999999975333 4899998 7999999999
Q ss_pred EeCCCCCCeecCCCCEEEeC------CeEEEEE
Q 020578 86 LHLPGNPPVKLDSQDLLQIG------DKEFYFL 112 (324)
Q Consensus 86 ~i~pG~~pv~L~~GDlIqIG------~t~f~Fl 112 (324)
+|.++. ++.|.+||+|+|| ..+|.|+
T Consensus 172 rI~~~~-~~~L~~GD~I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 172 VIPGAR-YIELRSGDVLTLSEFEEDNDYELIFM 203 (205)
T ss_dssp ECCBTS-CEECCTTCEEESSSSGGGCSEEEEEE
T ss_pred ECCCCc-eeECCCCCEEEECCCCCCCCeEEEEE
Confidence 998765 6899999999999 4566664
No 29
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.22 E-value=6.1e-11 Score=105.35 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=73.6
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC---CeEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR---RRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~---~~F~LedLSkNGTfVNG~~i~pG~~pv~L~ 97 (324)
.-|+|....++|||......+||.| ....|+++||.|..+..+ +.+.|...+.+.|||||++|. .++.|+
T Consensus 84 l~y~L~~g~t~VGr~~~~~~~dI~L----~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~---~~~~L~ 156 (184)
T 4egx_A 84 LLYYIKDGITRVGREDGERRQDIVL----SGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT---EPSILR 156 (184)
T ss_dssp SEEECCSEEEEEECSSSSSCCSEEC----CSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC---SCEECC
T ss_pred EEEEECCCcCcCCCCCcCCCCeEEE----CccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc---ccEEcC
Confidence 3699998899999987766789999 568999999999987532 346677777788999999995 279999
Q ss_pred CCCEEEeCCe-EEEEEecCcc
Q 020578 98 SQDLLQIGDK-EFYFLLPVRS 117 (324)
Q Consensus 98 ~GDlIqIG~t-~f~Fllp~~s 117 (324)
+||+|.||.. .|.|..|...
T Consensus 157 ~GDrI~lG~~h~Frfn~P~ea 177 (184)
T 4egx_A 157 SGNRIIMGKSHVFRFNHPEQA 177 (184)
T ss_dssp TTCEEEETTTEEEEEECHHHH
T ss_pred CCCEEEECCCCEEEECChHHH
Confidence 9999999975 5788776543
No 30
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.20 E-value=4.6e-11 Score=97.83 Aligned_cols=83 Identities=13% Similarity=0.290 Sum_probs=68.0
Q ss_pred eEEEe-ecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCeecCCC
Q 020578 21 FEYYM-QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQ 99 (324)
Q Consensus 21 ~ey~L-~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv~L~~G 99 (324)
..+.| ....++|||++.. .| .++.+||+|++|..|...+.+.|.++|+|+|+|||+.+.++. .+.|++|
T Consensus 15 ~~I~L~~g~~v~iGR~p~t---~I------~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~-~~~L~~G 84 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRGPET---KI------TDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQ-EVKLQPG 84 (102)
T ss_dssp CEEECCBTCEEEECSSTTT---CC------CCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTC-EEEECTT
T ss_pred CcEEcCCCCcEEeccCCcc---cc------ccCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCC-eEEeCCC
Confidence 44555 4556789999973 23 378999999999999766788999999999999999998876 6999999
Q ss_pred CEEEeCCeEEEEEe
Q 020578 100 DLLQIGDKEFYFLL 113 (324)
Q Consensus 100 DlIqIG~t~f~Fll 113 (324)
|+|.|-.-.+.|.+
T Consensus 85 D~l~Ll~~~~~~~v 98 (102)
T 3kt9_A 85 QVLHMVNELYPYIV 98 (102)
T ss_dssp CCEEEETTEEEEEE
T ss_pred CEEEEccCCceEEE
Confidence 99999876655543
No 31
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.13 E-value=6.7e-11 Score=113.74 Aligned_cols=93 Identities=22% Similarity=0.180 Sum_probs=69.1
Q ss_pred eEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecC---------CCeEEEEeC-CCCceEEcCEEeCCC
Q 020578 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFT---------RRRFALEVL-GKNGCFVEGVLHLPG 90 (324)
Q Consensus 21 ~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~---------~~~F~LedL-SkNGTfVNG~~i~pG 90 (324)
.+|.|....++|||...+...+|-+ +++.|||+||+|.++.. ...++|+|+ |+|||||||+++..
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~i----dD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~- 88 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQV----ISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQ- 88 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEEC----CCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCT-
T ss_pred eEEEecCCeEEECCCCCccCceeec----CCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCC-
Confidence 3677877779999998753334555 79999999999998631 247889997 69999999999964
Q ss_pred CCCeec-CCCCEEEeCCeEEEEEecCcccc
Q 020578 91 NPPVKL-DSQDLLQIGDKEFYFLLPVRSIL 119 (324)
Q Consensus 91 ~~pv~L-~~GDlIqIG~t~f~Fllp~~si~ 119 (324)
+ ...| .+||.|+||.....|.+.=....
T Consensus 89 ~-~~~L~~dgd~I~fG~~~~~fRl~W~P~V 117 (325)
T 3huf_A 89 N-GDSYKEKDLKIQLGKCPFTINAYWRSMC 117 (325)
T ss_dssp T-CEEECSSEEEEEETTCSSCEEEEECCCC
T ss_pred c-eeeecCCCCEEEecCCcceEEEEEeeeE
Confidence 3 3455 58999999986655554444433
No 32
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.13 E-value=8.6e-11 Score=97.57 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=71.1
Q ss_pred ecCceEEEe--ecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCe
Q 020578 17 QGEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPV 94 (324)
Q Consensus 17 ~G~~~ey~L--~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv 94 (324)
.+....+.| ....++|||++.. -| .++.+||+|++|..|..++.+.+.++|.|+|+|||+.+.++. .+
T Consensus 16 ~~~~~~I~Lp~~~g~~viGR~p~t---~I------~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k~~-~~ 85 (110)
T 2brf_A 16 PGEAPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGL-EG 85 (110)
T ss_dssp TTSSCCEECCSTTCCEEECSBTTT---TB------CCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTC-EE
T ss_pred CCCCCcEEeccCCCCEEEcCCCCc---cc------ccccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCCCC-EE
Confidence 344346777 5688999999963 12 468999999999999877888999999999999999998876 69
Q ss_pred ecCCCCEEEe--CCeEEEEEe
Q 020578 95 KLDSQDLLQI--GDKEFYFLL 113 (324)
Q Consensus 95 ~L~~GDlIqI--G~t~f~Fll 113 (324)
.|++||+|.| |.+.|.+.+
T Consensus 86 ~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 86 SLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp EEETTCEEEEETTEEEEEEEE
T ss_pred EecCCCEEEEccCCeEEEEEe
Confidence 9999999998 666666666
No 33
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.08 E-value=3e-10 Score=93.34 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=66.3
Q ss_pred ecCceEEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCc-eEEcCEEeCCCCCCee
Q 020578 17 QGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNG-CFVEGVLHLPGNPPVK 95 (324)
Q Consensus 17 ~G~~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNG-TfVNG~~i~pG~~pv~ 95 (324)
.|++....-...-+.|||++. +++.| +++.|||.||.|.... .+.|.+. |+|| +||||+++ + ++.
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~~---~~l~L----ddpsVs~~HAti~~~~-~G~~~l~--S~nGtVFVNGqrv--~--~~~ 75 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQKG---LEISI----ADESMELAHATACILR-RGVVRLA--ALVGKIFVNDQEE--T--VVD 75 (102)
T ss_dssp TTSCCEECCTTCCEEEESSTT---STEEC----CCTTSCTTCEEEEEEE-TTEEEEE--ESSSCEEETTEEE--S--EEE
T ss_pred CCcccEEeecCcEEEEcCCCC---CcEEE----CCcccccceEEEEecC-CceEEEE--eccCcEEECCEEe--e--eEE
Confidence 455544444556789999987 46777 7899999999999874 4666654 9999 69999999 3 689
Q ss_pred cCCCCE------EEeCCeEEEEEec
Q 020578 96 LDSQDL------LQIGDKEFYFLLP 114 (324)
Q Consensus 96 L~~GDl------IqIG~t~f~Fllp 114 (324)
|.+||. |+||+.+-.+.+.
T Consensus 76 I~~gDtI~g~v~lrFGnvea~l~~~ 100 (102)
T 3uv0_A 76 IGMENAVAGKVKLRFGNVEARLEFG 100 (102)
T ss_dssp ECGGGCBTTEEEEEETTEEEEEEEC
T ss_pred ccCCcccccEEEEEecCEEEEEEec
Confidence 999999 9999987776653
No 34
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.03 E-value=9.4e-10 Score=95.17 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=72.5
Q ss_pred ecCceEEEe--ecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCe
Q 020578 17 QGEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPV 94 (324)
Q Consensus 17 ~G~~~ey~L--~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv 94 (324)
.+....+.| ....++|||++.. .| .++.+||+|++|..|..++.+.|..+|.|+|+|||+.+.++. .+
T Consensus 16 d~~~~~I~Lp~~~g~vvIGRgPet---~I------tDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~~L~k~~-~~ 85 (143)
T 1yj5_C 16 TGGPPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGL-SG 85 (143)
T ss_dssp TTSCCCEECCTTTCEEEECSBTTT---TB------CCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCTTC-EE
T ss_pred CCCCCcEEeccCCCCEEEcCCCcc---cc------ccccccceeEEEEEecCCCeEEEEEcccCCcEECCEEecCCC-EE
Confidence 344346777 5689999999962 23 478999999999999877888899999999999999999876 69
Q ss_pred ecCCCCEEEe--CCeEEEEEecC
Q 020578 95 KLDSQDLLQI--GDKEFYFLLPV 115 (324)
Q Consensus 95 ~L~~GDlIqI--G~t~f~Fllp~ 115 (324)
.|++||+|.| |.+.|.|++..
T Consensus 86 ~L~~GD~LeLl~g~y~f~V~f~e 108 (143)
T 1yj5_C 86 SLSLGDVLYLVNGLYPLTLRWEE 108 (143)
T ss_dssp EECTTCEEESSSSCSEEEEEEEE
T ss_pred EecCCCEEEEecCCceEEEEecC
Confidence 9999999995 56677777644
No 35
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.99 E-value=6.4e-10 Score=105.85 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=69.2
Q ss_pred ceEEEEecC---ceEEEeecCeEEEcCCCCCCceeeecCCCCCC---------CcccccceEEEEecCCC---eEEEEeC
Q 020578 11 AGFAKLQGE---DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGG---------MNISRHHARIFYDFTRR---RFALEVL 75 (324)
Q Consensus 11 ~ayAkL~G~---~~ey~L~~~sItIGR~s~~~~VDIDLs~lg~d---------~~ISR~HA~I~yd~~~~---~F~LedL 75 (324)
..++.|... ...+.+....++|||+++ ||+.| ++ ..|||+||+|+.+.... .|+|+|.
T Consensus 8 ~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~---~~~~~----~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~ 80 (419)
T 3i6u_A 8 APWARLWALQDGFANLECVNDNYWFGRDKS---CEYCF----DEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDH 80 (419)
T ss_dssp CCSEEEEECSSSSCCEEECSSEEEEESSTT---SSEET----TCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEEC
T ss_pred CCceEeeecCCCCCceEecCCCEEecCCCc---cCEEE----CCcccccccccccccccceEEEEEcCCCCceEEEEEEC
Confidence 345666433 346889999999999976 66776 33 35699999997753222 3899999
Q ss_pred CCCceEEcCEEeCCCCCCeecCCCCEEEeCCe
Q 020578 76 GKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDK 107 (324)
Q Consensus 76 SkNGTfVNG~~i~pG~~pv~L~~GDlIqIG~t 107 (324)
|+|||||||..+.++. ..+|.++|.|.||.+
T Consensus 81 S~nGt~vn~~~~~~~~-~~~l~~~d~i~~~~~ 111 (419)
T 3i6u_A 81 SGNGTFVNTELVGKGK-RRPLNNNSEIALSLS 111 (419)
T ss_dssp CSSCEEETTEECCTTC-EEECCTTEEEEESST
T ss_pred CcCCceECcccccCCC-cccCCCCCEeeeecc
Confidence 9999999999998765 578999999999954
No 36
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.96 E-value=3.7e-10 Score=94.98 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=71.1
Q ss_pred ecCceEEEe--ecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCCCCCCe
Q 020578 17 QGEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPV 94 (324)
Q Consensus 17 ~G~~~ey~L--~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~pG~~pv 94 (324)
.+....+.| ....++|||.+.. .| .++.+||+|+++..|..++.+.+.++|.|+|+|||+.+.++. .+
T Consensus 23 ~~~~~~I~Lp~~~g~~viGRgp~t---~I------~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~k~~-~~ 92 (119)
T 1ujx_A 23 TGGPPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGL-SG 92 (119)
T ss_dssp SSSCCCCCCCTTSCCEEESBBTTT---TB------CCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCTTC-EE
T ss_pred CCCCCcEEeccCCCCEEEcCCCCc---cc------ccccccceeEEEEEecCCCEEEEEEcccCCcEECCEEecCCC-EE
Confidence 344345666 4678999999962 23 478999999999999877888899999999999999998876 69
Q ss_pred ecCCCCEEE--eCCeEEEEEecC
Q 020578 95 KLDSQDLLQ--IGDKEFYFLLPV 115 (324)
Q Consensus 95 ~L~~GDlIq--IG~t~f~Fllp~ 115 (324)
.|++||+|. .|.+.|.|.+..
T Consensus 93 ~L~~GD~l~Ll~g~y~~~v~f~~ 115 (119)
T 1ujx_A 93 SLSLGDVLYLVNGLYPLTLRWSG 115 (119)
T ss_dssp EEETTCCCBCBTTBSCCEEEECC
T ss_pred EecCCCEEEEecCCeEEEEEecc
Confidence 999999998 455666665543
No 37
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.95 E-value=6.6e-09 Score=87.84 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=80.2
Q ss_pred EEEEecCc--eEEEeecCeEEEcCCC-CCCceeeecCCCCCCCcccccceEEEEecCCCeEEEEeCCCCceEEcCEEeCC
Q 020578 13 FAKLQGED--FEYYMQTYSIILGRNS-KKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLP 89 (324)
Q Consensus 13 yAkL~G~~--~ey~L~~~sItIGR~s-~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~LedLSkNGTfVNG~~i~p 89 (324)
+-+|.|.. .+..+....++||.++ . +|+.| .+..|||+||+|.... +.|.|. .++|||||||+++..
T Consensus 7 lrvlsG~~~G~~l~L~~~~~~IGs~~~~---~DLvL----~D~~Vs~~H~~L~~~~--~g~~L~-~s~ngt~vdG~~v~~ 76 (123)
T 4a0e_A 7 CRFYQGKHRGVEVELPHGRCVFGSDPLQ---SDIVL----SDSEIAPVHLVLMVDE--EGIRLT-DSAEPLLQEGLPVPL 76 (123)
T ss_dssp EEECSGGGTTCEEEECSEEEEEESCTTT---CSEEC----CCTTSCSSCEEEEEET--TEEEEE-EESSCCEETTEECCT
T ss_pred EEEecCCCCCcEEEcCCCcEEECCCCCC---CCEEE----eCCCccceeEEEEECC--CeEEEE-eccCCEEECCEEccc
Confidence 45566654 4788888899999998 6 67888 6899999999999974 788887 679999999999865
Q ss_pred CCCCeecCCCCEEEeCCeEEEEEecCccccC
Q 020578 90 GNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 120 (324)
Q Consensus 90 G~~pv~L~~GDlIqIG~t~f~Fllp~~si~~ 120 (324)
+ ..|..|+.|++|.+.|.|.-..+....
T Consensus 77 ~---~~L~~g~~l~lG~~~l~~~~~~~~~p~ 104 (123)
T 4a0e_A 77 G---TLLRAGSCLEVGFLLWTFVAVGQPLPE 104 (123)
T ss_dssp T---CBCCTTSCEEETTEEEEEEETTSCCCS
T ss_pred c---cccCCCCEEEEccEEEEEEcCCCCccc
Confidence 4 489999999999999999988877654
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.34 E-value=6.7e-07 Score=81.82 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=60.1
Q ss_pred EEEeecCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCC--CeEEEEeCC-CCce-EEcCEEeCCCCCCeecC
Q 020578 22 EYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR--RRFALEVLG-KNGC-FVEGVLHLPGNPPVKLD 97 (324)
Q Consensus 22 ey~L~~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~--~~F~LedLS-kNGT-fVNG~~i~pG~~pv~L~ 97 (324)
.|.+....++|||+.. .||.| ++. + ||.|..+.+. +.|+|++++ +||+ ||||+++.. ++.|+
T Consensus 86 ~y~~~~~~itIG~~~~---~dI~l----~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~---~~~L~ 151 (238)
T 1wv3_A 86 AYPSIQDTMTIGPNAY---DDMVI----QSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQ---LTNKA 151 (238)
T ss_dssp ECCSSCSEEEEESSTT---SSEEC----TTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCS---SEEEE
T ss_pred EEecCCceEEEeCCCC---CeEEe----CCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCEEecc---ceecc
Confidence 4555555999999877 46777 233 2 5878775211 489999986 8995 999999952 57999
Q ss_pred -CCCEEEeCCeEEEEEecC
Q 020578 98 -SQDLLQIGDKEFYFLLPV 115 (324)
Q Consensus 98 -~GDlIqIG~t~f~Fllp~ 115 (324)
.||.|.||+..|.|.-..
T Consensus 152 ~~GD~I~ig~~~~~~~~~~ 170 (238)
T 1wv3_A 152 YIGDHIYVEGIWLEVQADG 170 (238)
T ss_dssp ETTCEEEETTEEEEECSSE
T ss_pred CCcCEEEECCEEEEEECCE
Confidence 999999999999886543
No 39
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=51.37 E-value=9.9 Score=28.24 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=24.3
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 020578 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (324)
Q Consensus 78 NGTfVNG~~i~pG~~pv~L~~GDlIqIG~t~f~F 111 (324)
..++|||+.+... ...+..||.|++++..+.+
T Consensus 46 G~V~VNG~~v~~~--~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 46 GQVKVDGAVETRK--RCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HHHEETTBCCCCS--SCCCCSSEEEEETTEEEEE
T ss_pred CEEEECCEEecCC--CCCCCCCCEEEECCEEEEE
Confidence 3499999887432 2578899999999987754
No 40
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=47.62 E-value=17 Score=26.34 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.5
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-+.|||+.+.+. ..|++||.|.|
T Consensus 48 ~v~vNg~~v~~~---~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS---DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT---SEECTTCEEEE
T ss_pred EEEECCEECCCC---CCcCCCCEEEE
Confidence 478899888653 68999998876
No 41
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=44.64 E-value=18 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.7
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
|..|||+.+.-. .+|++||.|+|
T Consensus 43 ~AkVNG~~v~L~---~~L~~gd~VeI 65 (78)
T 3hvz_A 43 GAKVDGRIVPID---YKVKTGEIIDV 65 (78)
T ss_dssp EEEETTEEECTT---CBCCTTCBEEE
T ss_pred EEEECCEEcCCC---cccCCCCEEEE
Confidence 578899988653 58999999887
No 42
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=43.60 E-value=11 Score=30.06 Aligned_cols=26 Identities=15% Similarity=-0.107 Sum_probs=20.4
Q ss_pred CCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 020578 77 KNGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 77 kNGTfVNG~~i~pG~~pv~L~~GDlIqIG 105 (324)
.+-+.|||+.+.. ...|++||.|+|=
T Consensus 58 ~~~V~Vng~~v~~---d~~L~dGDRVEIy 83 (97)
T 2hj1_A 58 TNKIGIFSRPIKL---TDVLKEGDRIEIY 83 (97)
T ss_dssp TSEEEEEECSCCT---TCBCCTTCEEEEC
T ss_pred ccEEEEcCEECCC---CccCCCCCEEEEE
Confidence 4568899988864 3689999999884
No 43
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=43.30 E-value=20 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.3
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-++|||+.+... .+|++||.|.|
T Consensus 60 ~v~VN~~~v~~~---~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAALG---EATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCTT---SBCCTTCEEEE
T ss_pred EEEECCEECCCC---cccCCCCEEEE
Confidence 488999988653 58999998765
No 44
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=40.23 E-value=7.4 Score=25.22 Aligned_cols=20 Identities=35% Similarity=0.812 Sum_probs=14.0
Q ss_pred cCCCCceehhhHHHHHHHHhcCc
Q 020578 241 CGPGEWMPMEKLYTELVEQYGDV 263 (324)
Q Consensus 241 cg~~ew~p~~klh~~l~~~~~~~ 263 (324)
||-|| +=|||.|.+.+|-.+
T Consensus 1 cggge---iwklheeflkkfeel 20 (32)
T 1m3w_A 1 CGGGE---IWKLHEEFLKKFEEL 20 (32)
T ss_dssp -CHHH---HHHHHHHHHHHHHHH
T ss_pred CCcch---HHHHHHHHHHHHHHH
Confidence 66665 559999999888543
No 45
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.35 E-value=20 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.0
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-+.|||+.+... ..+|++||.|.|
T Consensus 44 ~vavN~~~v~~~--~~~l~~gDeV~i 67 (74)
T 3rpf_C 44 AIALNDHLIDNL--NTPLKDGDVISL 67 (74)
T ss_dssp EEEESSSEECCT--TCCCCTTCEEEE
T ss_pred EEEECCEEcCCC--CcCCCCCCEEEE
Confidence 367788775432 368999998765
No 46
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=39.21 E-value=27 Score=25.35 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=17.6
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.|||+.+.. ..+|++||.|.|
T Consensus 53 v~vN~~~v~~---~~~l~~gD~V~i 74 (81)
T 1fm0_D 53 AAVNQTLVSF---DHPLTDGDEVAF 74 (81)
T ss_dssp EEETTEECCT---TCBCCTTCEEEE
T ss_pred EEECCEECCC---CCCCCCCCEEEE
Confidence 8889988853 358999998876
No 47
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=39.09 E-value=63 Score=30.27 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=17.9
Q ss_pred eecCCCCEEEeCCeEEEEEec
Q 020578 94 VKLDSQDLLQIGDKEFYFLLP 114 (324)
Q Consensus 94 v~L~~GDlIqIG~t~f~Fllp 114 (324)
-.|.+|.+|.+.+..+.+.-.
T Consensus 226 N~L~DGtLIDLCGaTLLWRSa 246 (263)
T 3ega_A 226 NVLQDGSLIDLCGATLLWRTA 246 (263)
T ss_dssp SBCCTTCEEECSSCEEEEEEC
T ss_pred ceeccCceeeecCceeeeech
Confidence 369999999999999998743
No 48
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=37.17 E-value=23 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=17.8
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+.|||+.+.+.+ ....|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 678888776431 1258999998876
No 49
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=36.04 E-value=32 Score=24.97 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=17.7
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.|||..+.+. ..|++||.|.|
T Consensus 42 vavN~~~v~~~---~~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDE---EEIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTT---SBCCTTCEEEE
T ss_pred EEECCEECCCc---ccCCCCCEEEE
Confidence 67899988654 38999998876
No 50
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=35.84 E-value=30 Score=26.02 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=19.0
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqIG 105 (324)
.+.|||+.+.++ ..|..||.|.|-
T Consensus 27 ~V~VNg~~~~~~---~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKAS---KEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCTT---CBCCTTCEEEEC
T ss_pred cEEECCEEcCCC---CCcCCCCEEEEE
Confidence 499999987543 579999998874
No 51
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=34.56 E-value=17 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.5
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
-+.|||+.+.+. ..|++||.|.|
T Consensus 48 ~VavNg~~v~~~---~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED---DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS---SCCCSSCCCBC
T ss_pred EEEECCEECCCC---CCcCCCCEEEE
Confidence 488999988653 68999998876
No 52
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=33.85 E-value=80 Score=28.24 Aligned_cols=42 Identities=5% Similarity=0.074 Sum_probs=29.8
Q ss_pred ceEEEee-cCeEEEcCCCCCCceeeecCCCCCCCcccccceEEEEecCCCeEEE
Q 020578 20 DFEYYMQ-TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFAL 72 (324)
Q Consensus 20 ~~ey~L~-~~sItIGR~s~~~~VDIDLs~lg~d~~ISR~HA~I~yd~~~~~F~L 72 (324)
-.++.+. ...++||+..+ ++|.|. .. ..|++|.++.. +.|.+
T Consensus 12 ~~~~~L~~~~~~tiG~~~~---~~itl~----~~---~~~i~l~~~~~-~~~~v 54 (238)
T 1wv3_A 12 LKMLNLRDGKTYTISEDER---ADITLK----SL---GEVIHLEQNNQ-GTWQA 54 (238)
T ss_dssp EEEEECCTTCCEEEESCTT---SSEECT----TC---CCCEEEEECTT-SCEEE
T ss_pred EEEEecCCCcEEEECCCcc---ceEEec----CC---CccEEEEEccC-CeEEE
Confidence 3467776 57899998887 567762 11 78889998643 78887
No 53
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=32.38 E-value=26 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=17.9
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
++|||+.+.. ..+|++||.|.|
T Consensus 70 v~VNg~~v~~---~~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSW---DEELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCT---TCBCCTTCEEEE
T ss_pred EEECCEECCC---CCCCCCCCEEEE
Confidence 8899988864 268999998876
No 54
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=31.22 E-value=31 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.4
Q ss_pred eEEcCEEeCCCCC-CeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNP-PVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~-pv~L~~GDlIqI 104 (324)
+.|||+.+.+.+- ...|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 7789988865321 268999999876
No 55
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.97 E-value=25 Score=26.49 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=19.1
Q ss_pred eEEcCEEeCCCCC-CeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNP-PVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~-pv~L~~GDlIqI 104 (324)
+.|||..+.+.+- ...|++||.|.|
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 7889998876420 158999999987
No 56
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=28.46 E-value=26 Score=25.04 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=17.9
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+.|||+.+.+.+ ....|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 788998886421 0257999998876
No 57
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=28.06 E-value=22 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=18.2
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~-~pv~L~~GDlIqI 104 (324)
+.|||..+.+.+ ....|++||.|.|
T Consensus 33 V~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 678888775531 1258999999887
No 58
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=27.53 E-value=53 Score=27.01 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.9
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 020578 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (324)
Q Consensus 79 GTfVNG~~i~pG~~pv~L~~GDlIqIG 105 (324)
.+.|||+.+.++ ..|..||.|.|-
T Consensus 35 ~V~VNG~~vk~s---~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRSKPS---KIVELNATLTLR 58 (133)
T ss_dssp CEEETTEECCTT---CBCCTTCEEEEE
T ss_pred cEEECCEEcCCC---CEeCCCCEEEEE
Confidence 499999987543 578999988774
No 59
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=24.79 E-value=40 Score=25.33 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=17.5
Q ss_pred eEEcCEEeCCC-CCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPG-NPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG-~~pv~L~~GDlIqI 104 (324)
++|||+.+... ....+|++||.|.|
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEE
Confidence 78899988531 11368999998765
No 60
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=23.99 E-value=3.4e+02 Score=24.72 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=46.1
Q ss_pred EEEe--ecCeEEE-c-CCCCCCceeeecCCCCC---CC--cccccc----eEEEEecCCCeEEEEeCCCCceEEcCEEeC
Q 020578 22 EYYM--QTYSIIL-G-RNSKKSTVDVDLSSLGG---GM--NISRHH----ARIFYDFTRRRFALEVLGKNGCFVEGVLHL 88 (324)
Q Consensus 22 ey~L--~~~sItI-G-R~s~~~~VDIDLs~lg~---d~--~ISR~H----A~I~yd~~~~~F~LedLSkNGTfVNG~~i~ 88 (324)
.|.. ....|+| | -++. +.--+.|..+.. +. ...|+| .+|.|+. ++..+|+++|.+.+||+.-...
T Consensus 20 ~f~~~~~~~~v~IDG~~dps-~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~-~G~Vw~~n~S~~~IFVqS~~ln 97 (234)
T 1ygs_A 20 TFKVPSSCPIVTVDGYVDPS-GGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKG-EGDVWVRCLSDHAVFVQSYYLD 97 (234)
T ss_dssp EEEEETTCSEEEEESSCCTT-CSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEET-TTEEEEEECSSSCEEEECHHHH
T ss_pred eEEecCCCCEEEEecCcCCC-CCCeeecccccCCCCcHHHHHHHHhhcCceEEEEec-CCcEEEEecCCCCEEEcCCCcc
Confidence 3666 5778888 4 4443 234577743321 11 122333 5778874 4788999999999999753321
Q ss_pred ------CCCCCeecCCCCEEE
Q 020578 89 ------PGNPPVKLDSQDLLQ 103 (324)
Q Consensus 89 ------pG~~pv~L~~GDlIq 103 (324)
++..-++|.+|..|+
T Consensus 98 ~~~~~~p~~~V~Ki~pg~~lK 118 (234)
T 1ygs_A 98 REAGRAPGDAVHKIYPSAYIK 118 (234)
T ss_dssp HTTTCCTTCCCEEECTTCEEE
T ss_pred ccccCCCCCcEEEeCCCCeEE
Confidence 122234566665544
No 61
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=23.58 E-value=21 Score=28.87 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=17.8
Q ss_pred eEEcCEEeC--CCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHL--PGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~--pG~~pv~L~~GDlIqI 104 (324)
++|||+-+. .+- .++|++||.|.|
T Consensus 76 VlVN~~di~~l~gl-dt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGEL-DYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTT-TCBCCSSEEEEE
T ss_pred EEECCeeeeccCCc-CcCCCCCCEEEE
Confidence 899998543 232 478999998776
No 62
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=22.65 E-value=65 Score=22.68 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=16.6
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
+.|||+.+... .+|.+||.|+|
T Consensus 39 a~vNg~lvdl~---~~L~~~~~Vei 60 (73)
T 2kmm_A 39 AKVNHKLVPLS---YVLNSGDQVEV 60 (73)
T ss_dssp EEETTEECCTT---CBCCSSSBEEE
T ss_pred EEECCEEeCCC---cCcCCCCEEEE
Confidence 57899888653 58999997765
No 63
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=22.47 E-value=40 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=17.7
Q ss_pred eEEcCEEeCCC-CCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPG-NPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG-~~pv~L~~GDlIqI 104 (324)
+.|||+.+... ....+|++||.|.|
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCCCCCCEEEE
Confidence 78888877421 11368999998876
No 64
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=22.33 E-value=53 Score=26.37 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=19.6
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 020578 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (324)
Q Consensus 80 TfVNG~~i~pG~~pv~L~~GDlIqI 104 (324)
..+||+....|-..++|++||.|.|
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~ 95 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFEL 95 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEE
Confidence 3468888877766689999998765
No 65
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=22.09 E-value=2.9e+02 Score=22.16 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeecccCCCCCCCCCCCchhHHHHHHhhCCCcEEEEee
Q 020578 228 DVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTR 307 (324)
Q Consensus 228 ~v~~~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~pw~~l~~ll~kypehfvi~~~ 307 (324)
+++..|...+.+++.-..|+.+..+=+-|...|.+. -+|.| . ...|..|++.|...|-|..+
T Consensus 21 ~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdF----DpRnY-----------G---y~kLs~Li~a~~~~FEi~~r 82 (105)
T 2kpm_A 21 FPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDF----DSRLY-----------G---YKKLSDLVKARTDLFVTEER 82 (105)
T ss_dssp CCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTC----CGGGT-----------T---CSSHHHHHHHCTTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCC----Ccccc-----------C---cccHHHHHHhhCCcEEEEee
Confidence 456667777788888899999999999998887654 23333 1 12488899999999999987
Q ss_pred cCCceeE
Q 020578 308 SKGRVTL 314 (324)
Q Consensus 308 ~~~~~~~ 314 (324)
..+....
T Consensus 83 ~~~~~~~ 89 (105)
T 2kpm_A 83 QVPGSTQ 89 (105)
T ss_dssp ECTTCSS
T ss_pred cCCCCCc
Confidence 7665433
No 66
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=21.92 E-value=73 Score=26.51 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred hhHHHHhhhhhHHHHHHHHHHhhccCCCCceehh
Q 020578 217 DNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPME 250 (324)
Q Consensus 217 d~~~~~~~ee~~v~~~~~~~lsdlcg~~ew~p~~ 250 (324)
.+..-.|++|-++++|| .||++||--.+
T Consensus 13 ~~~~e~Q~eElEaL~SI------Y~~~de~~v~d 40 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSM------FPNQGEVKLED 40 (154)
T ss_dssp HHHHHHHHHHHHHHHHH------CCSTTSEEESC
T ss_pred hhhHHHHHHHHHHHHHh------CCCCCeEEEec
Confidence 34445689999999987 78999996543
No 67
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=21.37 E-value=36 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=19.3
Q ss_pred CCceEEcCEEeCCC-CCCeecCCCCEEEe
Q 020578 77 KNGCFVEGVLHLPG-NPPVKLDSQDLLQI 104 (324)
Q Consensus 77 kNGTfVNG~~i~pG-~~pv~L~~GDlIqI 104 (324)
.+-+.|||+.+... ....+|++||.|.|
T Consensus 64 ~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 64 SINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred ccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 34589999877421 11368999998876
Done!