BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020581
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
 pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
          Length = 316

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 158 FVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQ 217
           F++DR RS+RQD   QN    +A++  E+IV+ H++  H +                LEQ
Sbjct: 35  FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQ 90

Query: 218 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVL 251
           L K+L +L  +Y+  RSS      EAEFR++ +L
Sbjct: 91  LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALL 124


>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
           Sage
 pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
           Sage
 pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
           Pyrophosphate
 pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
           Pyrophosphate
 pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
           3-aza- 2,3-dihydrogeranyl Diphosphate
 pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
           3-aza- 2,3-dihydrogeranyl Diphosphate
 pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
           Aza-2,3-Dihydrogeranyl Diphosphate
 pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
           Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
 pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
           Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
 pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
           Pyrophosphate, And (1r,4s)-2-Azabornane
 pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
           Pyrophosphate, And (1r,4s)-2-Azabornane
 pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
           Product
 pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
           Product
          Length = 549

 Score = 31.2 bits (69), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 214 NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRH 271
           +L Q TK +  LY      R  +   E   EF +  +   LD  G  + E+L LW RH
Sbjct: 137 SLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRH 194


>pdb|3L6U|A Chain A, Crystal Structure Of Abc-Type Sugar Transport System,
           Periplasmic Component From Exiguobacterium Sibiricum
 pdb|3L6U|B Chain B, Crystal Structure Of Abc-Type Sugar Transport System,
           Periplasmic Component From Exiguobacterium Sibiricum
          Length = 293

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 210 LHYLNLEQLTKALTSLYNLY------EANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGE 263
           L +++L+     +T+L ++Y      EA ++  P+   +   RS  V+  + SN Q +GE
Sbjct: 58  LEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRXIRSDAVVSSITSNNQXIGE 117

Query: 264 SLSLWFRH 271
            L+ + ++
Sbjct: 118 QLASYIKN 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,425,781
Number of Sequences: 62578
Number of extensions: 217418
Number of successful extensions: 512
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)