Query 020581
Match_columns 324
No_of_seqs 153 out of 463
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1860 Nuclear protein export 100.0 4E-67 8.6E-72 543.9 20.5 275 38-323 56-368 (927)
2 COG5079 SAC3 Nuclear protein e 100.0 1.5E-64 3.2E-69 497.1 21.2 275 35-323 29-329 (646)
3 PF03399 SAC3_GANP: SAC3/GANP/ 100.0 3.6E-42 7.7E-47 308.6 16.3 175 122-323 2-177 (204)
4 KOG1861 Leucine permease trans 100.0 1.5E-38 3.2E-43 311.6 12.5 177 112-322 286-462 (540)
5 KOG3151 26S proteasome regulat 90.5 2.3 4.9E-05 40.1 9.5 106 179-305 54-160 (260)
6 PF10075 PCI_Csn8: COP9 signal 88.8 1.3 2.8E-05 37.7 6.2 62 242-306 3-65 (143)
7 KOG2908 26S proteasome regulat 53.5 62 0.0013 32.3 7.8 42 281-322 233-288 (380)
8 PF05789 Baculo_VP1054: Baculo 52.2 5 0.00011 39.4 0.1 13 76-88 254-266 (325)
9 PHA02755 hypothetical protein; 28.5 1.5E+02 0.0032 23.5 4.9 46 272-317 14-68 (96)
10 KOG0775 Transcription factor S 27.7 1.4E+02 0.003 29.0 5.6 59 263-322 80-146 (304)
No 1
>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4e-67 Score=543.85 Aligned_cols=275 Identities=36% Similarity=0.583 Sum_probs=240.3
Q ss_pred ccCCCCCCCCCCc-hHHHHHhHHHhHHHh----------------hcCCccccCCCCCcHHHHHHHHHhcccccchhccC
Q 020581 38 SFPKSSSSSSSSS-ANDVRDRRRETQEEK----------------QEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHG 100 (324)
Q Consensus 38 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~k----------------~~~~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~~ 100 (324)
|..++++.+.++- ++-+..-++.++.++ ....+||||+|||||+||++|+++++||+||+.+
T Consensus 56 r~~~p~~~~~~~~~~~~l~~~r~~~~~~~~~~~~kd~~~~~~~~~~~~~~vGtC~dMCPE~Er~eRe~~~~l~~yE~~p- 134 (927)
T KOG1860|consen 56 RVARPSSLLERNAMLEPLKGKRTFEQFEMERDALKDLLPKRENLEPAELFVGTCPDMCPEKERYEREREKDLHPYEVVP- 134 (927)
T ss_pred cccCcccccchhhhhhhhhcccCChHHHHHHhhcccccccccccchhhhhcccchhhCchHHHHHHHHhcCCCeeeecC-
Confidence 8888888888886 444432222222222 2359999999999999999999999999999987
Q ss_pred CCCCCCccchhhcccccccCCC-CCCCCCCCHHHHHHHHHHHHH-HhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCc
Q 020581 101 DPRNSSPALAVKKFCRTMSAKE-VRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVND 178 (324)
Q Consensus 101 ~~~~~~~~~aVK~Y~RsaA~~~-~~P~~vRP~~vL~kT~~yLl~-~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~ 178 (324)
++++++|.+|||+|+|||||++ |.|+|||||+||.+||+||++ ++...+.++..+|+||||||||||||||+||+.+.
T Consensus 135 ~~~~~~~~~aVK~ysRPAAgke~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~ 214 (927)
T KOG1860|consen 135 DSKQASPSLAVKEYSRPAAGKERPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQ 214 (927)
T ss_pred CCcccCHHHHHHHhcCcccCCCCCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 6789999999999999999986 589999999999999999996 55566679999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCC
Q 020581 179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG 258 (324)
Q Consensus 179 ~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~ 258 (324)
+||.|+|+|+||||++.|+||+.+ ++|+ .++|+|||+|||.+|.++|+|+++.|+.||||+||+||++|++|++++
T Consensus 215 ~Av~llE~i~RfhI~~~h~Lce~~--~~Fd--a~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~ 290 (927)
T KOG1860|consen 215 EAVELLERIARFHILFRHRLCEEP--EQFD--AQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQ 290 (927)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc--ccCC--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCch
Confidence 999999999999999999999987 3575 789999999999999999999999999999999999999999999986
Q ss_pred CchhhhHHHHhhcCCccccCCHhHHHHHHHHHHHHhCCHHHHHH------------------HHhh-CCChHHHHHHHhh
Q 020581 259 QPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLS------------------TVAA-EASYLQYCIIEPY 319 (324)
Q Consensus 259 ~~l~~~L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~------------------Ll~~-~a~yL~aCll~~~ 319 (324)
. ..-++.+|++++++++|++|+.+..|++.|||++||+ +..+ ..+||++|+++.|
T Consensus 291 ~------~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~ 364 (927)
T KOG1860|consen 291 V------VRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELF 364 (927)
T ss_pred H------HHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 2 1234567999999999999999999999999887764 6654 4688999999999
Q ss_pred hccc
Q 020581 320 IDEA 323 (324)
Q Consensus 320 f~~v 323 (324)
|..+
T Consensus 365 f~~i 368 (927)
T KOG1860|consen 365 FPDI 368 (927)
T ss_pred HHHH
Confidence 9753
No 2
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-64 Score=497.15 Aligned_cols=275 Identities=32% Similarity=0.452 Sum_probs=246.1
Q ss_pred CccccCCCCCCCCCCchHHHHHhHHHhHH---Hhh-----c-CCccccCCCCCcHHHHHHHHHhcccccchhccCCCCCC
Q 020581 35 NRFSFPKSSSSSSSSSANDVRDRRRETQE---EKQ-----E-EAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNS 105 (324)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~-~~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~~~~~~~ 105 (324)
-.+|..+|++++.+|.+|.+..-++++++ +|. + -.+||||++|||++|+.+|..+++|++||.. ++.+++
T Consensus 29 r~~m~~l~ss~~d~n~fe~LkklR~kere~~eak~a~~l~~a~vfvGtC~dmCPefEreeR~lqn~v~pyE~n-P~~k~a 107 (646)
T COG5079 29 RVFMVLLFSSTLDTNPFELLKKLRAKERELLEAKSANALPSAIVFVGTCMDMCPEFEREERVLQNDVSPYEAN-PNVKKA 107 (646)
T ss_pred HHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccccchhheeecchhhhCchHHHHHHHHhcCCchhhcC-cccccc
Confidence 34588999999999999999988888777 332 1 2899999999999999999999999999986 456899
Q ss_pred CccchhhcccccccCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHH
Q 020581 106 SPALAVKKFCRTMSAKEV-RASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184 (324)
Q Consensus 106 ~~~~aVK~Y~RsaA~~~~-~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vl 184 (324)
++++|||.|.|+|||+.+ .|+|||||+||.+|+|||+.+++. .++...|.|+|||+||||||||+|+..+.+||+|+
T Consensus 108 ~~~lAvKay~RPAAgk~p~LPsDVRPp~VLvktidylv~~c~~--d~l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~ 185 (646)
T COG5079 108 SRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECH 185 (646)
T ss_pred chhhHHHHhcCccccCCCCCcccCCChHHHHHHHHHHHHHhcC--cchHHHHHHHHhhhHHHHhhceeecccCchHHHHH
Confidence 999999999999999865 799999999999999999966654 36678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhh
Q 020581 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGES 264 (324)
Q Consensus 185 E~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~ 264 (324)
|+||||||++.|.|++.+ +|+ .+|++|||.+.|.+|.++|++++..+..||||+||+||.||.+|+|+.- +
T Consensus 186 EriaRfhIl~lh~L~~~p---~Fs--~qqeleQL~ksL~sL~elYdd~r~~~~~cpneaEFraYaiL~slgDp~y--v-- 256 (646)
T COG5079 186 ERIARFHILFLHLLHDHP---HFS--KQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYAILASLGDPRY--V-- 256 (646)
T ss_pred HHHHHHHHHHHHHHhcCc---ccc--HHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCchh--h--
Confidence 999999999999999864 576 6899999999999999999999999999999999999999999999862 2
Q ss_pred HHHHhhcCCccccCCHhHHHHHHHHHHHHhCC---------------HHHHHHHHhh-CCChHHHHHHHhhhccc
Q 020581 265 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGN---------------YRRFLSTVAA-EASYLQYCIIEPYIDEA 323 (324)
Q Consensus 265 L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~N---------------y~rFF~Ll~~-~a~yL~aCll~~~f~~v 323 (324)
.-++.+|..+++.+.|+.|+.+..-.+.|| |.|||+++++ .++||++||++.|+..+
T Consensus 257 --~~iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rnteac~nlytrFfkl~qSpsv~~lmg~lle~h~~si 329 (646)
T COG5079 257 --AGIQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISI 329 (646)
T ss_pred --hccccCCccccccchHHHHHHHHHHhhccCeeeccccchhhhhHHHHHHHHHHhCccHHHHHHHHHHHhhHHH
Confidence 224457899999999999999988777776 7999999976 69999999999998764
No 3
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=100.00 E-value=3.6e-42 Score=308.56 Aligned_cols=175 Identities=40% Similarity=0.629 Sum_probs=137.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHhhhhhcc
Q 020581 122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS 201 (324)
Q Consensus 122 ~~~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~I~s~~~L~~~ 201 (324)
+|+|++||||+||++||+||++++ ++..+|+|||||+||||||+++||+.+++++.|||.+|||+|.+
T Consensus 2 ~p~p~~vRp~~vL~~t~~~l~~~~-----~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~------- 69 (204)
T PF03399_consen 2 EPNPSDVRPPEVLKKTLNYLLRKI-----PFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES------- 69 (204)
T ss_dssp ---------HHHHHHHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH-------
T ss_pred CCChHhCCCHHHHHHHHHHHHHHh-----hhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc-------
Confidence 578999999999999999999988 45579999999999999999999999999999999999999998
Q ss_pred CCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhcCCccccCCHh
Q 020581 202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 281 (324)
Q Consensus 202 ~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~i~~sp~ 281 (324)
.|.+||++|+++|+++|++.+. +..++|++||.||+||+++.+.+. . .+...+..+|+++..+|.
T Consensus 70 -----------~d~~qf~~c~~~L~~lY~~~~~-~~~~~~~~ef~~y~lL~~l~~~~~--~-~~~~~l~~l~~~~~~~~~ 134 (204)
T PF03399_consen 70 -----------GDLEQFNQCLSQLKELYDDLRD-LPPSPNEAEFIAYYLLYLLCQNNI--P-DFHMELELLPSEILSSPY 134 (204)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHH-T---TTHHHHHHHHHHHTT-T-----T-HHHHHHTTS-HHHHTSHH
T ss_pred -----------CCHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHcccc--h-HHHHHHHHCchhhhcCHH
Confidence 1378999999999999999743 568899999999999999954321 1 233445677889999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHh-hCCChHHHHHHHhhhccc
Q 020581 282 MWFARQALRYFQMGNYRRFLSTVA-AEASYLQYCIIEPYIDEA 323 (324)
Q Consensus 282 v~~Al~v~~A~~~~Ny~rFF~Ll~-~~a~yL~aCll~~~f~~v 323 (324)
|++|++|..|+.+|||++||++++ ..+|++++|+|+.|++.|
T Consensus 135 i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~i 177 (204)
T PF03399_consen 135 IQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRI 177 (204)
T ss_dssp HHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 999999999999999999999983 489999999999999875
No 4
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=100.00 E-value=1.5e-38 Score=311.63 Aligned_cols=177 Identities=21% Similarity=0.353 Sum_probs=154.8
Q ss_pred hcccccccCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHH
Q 020581 112 KKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFH 191 (324)
Q Consensus 112 K~Y~RsaA~~~~~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~ 191 (324)
|.|.|+++ .|+|+.|||++||++++--|..++... ..|.|++|+|+|||||||||+|.+.++|+|||..||+
T Consensus 286 KsyLRLTs--APdPstVRP~~VL~ksL~~vkdk~k~~-----~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARI- 357 (540)
T KOG1861|consen 286 KSYLRLTS--APDPSTVRPLEVLKKSLCLVKDKWKAK-----ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARI- 357 (540)
T ss_pred HhHhhhcc--CCCccccCCHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHH-
Confidence 99999998 899999999999999999999888764 4799999999999999999999999999999996665
Q ss_pred HHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhc
Q 020581 192 VISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRH 271 (324)
Q Consensus 192 I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~ 271 (324)
+.+.+| +++|+||+++|+.+|... +++ +-.||.||.|||.+-..+.. + +...++.
T Consensus 358 -------ALEkGD----------~~EfNQCQtQLk~LY~eg----ipg-~~~EF~AYriLY~i~tkN~~--d-i~sll~~ 412 (540)
T KOG1861|consen 358 -------ALEKGD----------LEEFNQCQTQLKALYSEG----IPG-AYLEFTAYRILYYIFTKNYP--D-ILSLLRD 412 (540)
T ss_pred -------HHhcCC----------HHHHHHHHHHHHHHHccC----CCC-chhhHHHHHHHHHHHhcCch--H-HHHHHHh
Confidence 444454 799999999999999543 333 48999999999998765522 2 3345788
Q ss_pred CCccccCCHhHHHHHHHHHHHHhCCHHHHHHHHhhCCChHHHHHHHhhhcc
Q 020581 272 VPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE 322 (324)
Q Consensus 272 L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~~~a~yL~aCll~~~f~~ 322 (324)
|.+++++++.|.+||+|..|+..|||++||+|+. .||.|..|||+.|++.
T Consensus 413 lt~E~ked~~V~hAL~vR~A~~~GNY~kFFrLY~-~AP~M~~yLmdlF~er 462 (540)
T KOG1861|consen 413 LTEEDKEDEAVAHALEVRSAVTLGNYHKFFRLYL-TAPNMSGYLMDLFLER 462 (540)
T ss_pred ccHhhccCHHHHHHHHHHHHHHhccHHHHHHHHh-hcccchhHHHHHHHHH
Confidence 9999999999999999999999999999999984 8999999999999864
No 5
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=2.3 Score=40.11 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCC
Q 020581 179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG 258 (324)
Q Consensus 179 ~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~ 258 (324)
.|-+|||..|=.-|.. -|.+-|..-+.+|+..|-|....=..++++.-+.+..+|+.|..+.
T Consensus 54 ~aR~ilEi~vl~SI~t------------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNR 115 (260)
T KOG3151|consen 54 IARDILEIGVLLSILT------------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNR 115 (260)
T ss_pred HHHHHHHHHHHHHHHh------------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhcc
Confidence 4568999866433332 2356788889999999998765434678888899999999887765
Q ss_pred CchhhhHHHHhhcCCccccCC-HhHHHHHHHHHHHHhCCHHHHHHHHh
Q 020581 259 QPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVA 305 (324)
Q Consensus 259 ~~l~~~L~~~l~~L~~~i~~s-p~v~~Al~v~~A~~~~Ny~rFF~Ll~ 305 (324)
.+ .+-.-+..||..++.+ |.|+.++.+=..+..|-|-+.|...+
T Consensus 116 ia---eFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~ 160 (260)
T KOG3151|consen 116 IA---EFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQ 160 (260)
T ss_pred HH---HHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHh
Confidence 22 1223356788888776 99999999999999999999998654
No 6
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=88.80 E-value=1.3 Score=37.75 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhccCCCchhhhHHHHhhcCCccccCC-HhHHHHHHHHHHHHhCCHHHHHHHHhh
Q 020581 242 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVAA 306 (324)
Q Consensus 242 e~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~i~~s-p~v~~Al~v~~A~~~~Ny~rFF~Ll~~ 306 (324)
.+++.+-.|+..|-..+ +. .....+..+|+.+..+ |.|+....+..++.+++|..|+..+++
T Consensus 3 ~~~~~~~~Ll~~L~~~~--~~-df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~ 65 (143)
T PF10075_consen 3 NPEIYALILLKYLMQND--LS-DFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRS 65 (143)
T ss_dssp -HHHHHHHHHHHHHTTT--ST-HHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-T
T ss_pred chhHHHHHHHHHHHcCC--ch-HHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46777766666665443 22 2334456789999995 999999999999999999999998753
No 7
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.49 E-value=62 Score=32.34 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhh--CCChHH------------HHHHHhhhcc
Q 020581 281 EMWFARQALRYFQMGNYRRFLSTVAA--EASYLQ------------YCIIEPYIDE 322 (324)
Q Consensus 281 ~v~~Al~v~~A~~~~Ny~rFF~Ll~~--~a~yL~------------aCll~~~f~~ 322 (324)
..++-.+++.||..||..+|++|... +.|-|. -|||+.-|..
T Consensus 233 ~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~qKI~LmaLiEi~F~r 288 (380)
T KOG2908|consen 233 NREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLLQKIRLLALIEITFSR 288 (380)
T ss_pred cHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677889999999999999998753 445443 3777766643
No 8
>PF05789 Baculo_VP1054: Baculovirus VP1054 protein; InterPro: IPR008416 This family consists of several VP1054 proteins from the Baculoviruses. VP1054 is a virus structural protein required for nucleocapsid assembly [].
Probab=52.22 E-value=5 Score=39.39 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHH
Q 020581 76 FMCPEAERLQRQR 88 (324)
Q Consensus 76 ~MCPe~Er~~R~~ 88 (324)
-|||..|+..|+.
T Consensus 254 iMCPPremvKrIf 266 (325)
T PF05789_consen 254 IMCPPREMVKRIF 266 (325)
T ss_pred ccCChHHHHHHHH
Confidence 4999999999986
No 9
>PHA02755 hypothetical protein; Provisional
Probab=28.46 E-value=1.5e+02 Score=23.53 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=34.9
Q ss_pred CCccccCCHh---------HHHHHHHHHHHHhCCHHHHHHHHhhCCChHHHHHHH
Q 020581 272 VPSPIIKSKE---------MWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIE 317 (324)
Q Consensus 272 L~~~i~~sp~---------v~~Al~v~~A~~~~Ny~rFF~Ll~~~a~yL~aCll~ 317 (324)
.|..+..+|. |+.|+.|+.|+..-+-..|=..+-..---|+.|.+-
T Consensus 14 ypdavqgsp~~e~aee~ykmkyalgic~alke~dpk~fee~fgage~~lq~c~~~ 68 (96)
T PHA02755 14 YPDAVQGSPAAEAAEEKYKMKYALGICQALKEADPKAFEETFGAGEADLQKCALA 68 (96)
T ss_pred CcccccCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcccchhHHHHHHH
Confidence 4556666663 689999999999999888877664355678888763
No 10
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=27.66 E-value=1.4e+02 Score=28.97 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=43.2
Q ss_pred hhHHHHhhcCC--ccccCCHhHHHHHHHHHHHHhCCHHHHHHHHhh------CCChHHHHHHHhhhcc
Q 020581 263 ESLSLWFRHVP--SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCIIEPYIDE 322 (324)
Q Consensus 263 ~~L~~~l~~L~--~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~~------~a~yL~aCll~~~f~~ 322 (324)
+.|..++..|| .++..+.-|.-|.. +.||..|||...|++|.. .-+.||+-=++-|+.|
T Consensus 80 erL~rFlwsLp~~~~~~~nEsvLkArA-~vafH~gnf~eLY~iLE~h~Fs~~~h~~LQ~lWl~AhY~E 146 (304)
T KOG0775|consen 80 ERLGRFLWSLPVCEELLKNESVLKARA-VVAFHSGNFRELYHILENHKFSPHNHPKLQALWLKAHYKE 146 (304)
T ss_pred HHHHHHHHcCchHHHHhhhHHHHHHHH-HHHHhcccHHHHHHHHHhccCChhhhHHHHHHHHHHHHHH
Confidence 45777888888 56777777777764 579999999999999953 2466777666666543
Done!