Query 020581
Match_columns 324
No_of_seqs 153 out of 463
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 05:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020581.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020581hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 16.8 38 0.0027 21.4 2.2 33 215-249 9-44 (48)
2 d1rz4a2 a.118.1.18 (A:2-131) E 14.9 2.2E+02 0.016 21.2 10.6 102 177-306 21-122 (130)
3 d2ivxa2 a.74.1.1 (A:150-262) C 12.3 1.5E+02 0.011 21.4 5.1 73 154-231 23-97 (113)
4 d2v4jb1 d.58.1.5 (B:209-277) D 11.8 11 0.00078 26.1 -1.8 12 69-80 51-62 (69)
5 d2ddha2 a.29.3.2 (A:475-655) P 8.9 2.6E+02 0.019 21.3 5.7 18 127-144 2-19 (181)
6 d1kuqa_ a.16.1.2 (A:) Ribosoma 8.8 1.8E+02 0.013 19.9 4.2 19 287-305 62-80 (84)
7 d2a15a1 d.17.4.3 (A:5-136) Hyp 8.7 72 0.0052 22.1 1.9 31 278-308 2-32 (132)
8 d1mmca_ g.3.1.2 (A:) Antimicro 7.9 57 0.0041 18.1 0.7 10 69-78 4-14 (30)
9 d1pfva3 g.41.1.1 (A:141-175) M 7.6 50 0.0036 19.5 0.4 7 70-76 1-7 (35)
10 d2ftxb1 d.300.1.2 (B:155-213) 7.4 56 0.004 21.6 0.6 9 155-163 49-57 (59)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.78 E-value=38 Score=21.41 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHH---HHHHHHHhhcCCCCCCCCHHHHHHHH
Q 020581 215 LEQLTKALT---SLYNLYEANRSSKPIHEKEAEFRSFY 249 (324)
Q Consensus 215 ~eql~kcl~---sL~~lY~d~~~~~~~~~ne~EF~aY~ 249 (324)
+|+=++-|+ .|.++|+|+--.++.+ -.|||+=+
T Consensus 9 LeEKnr~L~enp~L~qLYkdLVvs~Vit--seEFWan~ 44 (48)
T d2diia1 9 LEEKNRMLQEDPVLFQLYKDLVVSQVIS--AEEFWANR 44 (48)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTTSSC--HHHHHHHH
T ss_pred HHHHhhccccCHHHHHHHHHHHHhcccc--HHHHHHhc
Confidence 444444443 5788999987666554 47899843
No 2
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.94 E-value=2.2e+02 Score=21.19 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=63.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcc
Q 020581 177 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS 256 (324)
Q Consensus 177 ~~~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~ 256 (324)
+++.+.++|..+...+- + +. |+ . .-+-++-.|.++|-. ....+- ...||+..-.
T Consensus 21 NPe~l~~Le~YV~~Q~~------~-~~---Yd------l-~aNLalLKLYQfnP~--------~~~~~v-i~~ILlKALt 74 (130)
T d1rz4a2 21 NPENLATLERYVETQAK------E-NA---YD------L-EANLAVLKLYQFNPA--------FFQTTV-TAQILLKALT 74 (130)
T ss_dssp CGGGHHHHHHHHHHHHH------H-TC---CC------H-HHHHHHHHHHHHSGG--------GCCHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------h-cc---cc------H-HHHHHHHHHHhcCcC--------cCCHHH-HHHHHHHHHH
Confidence 68899999997755432 2 21 32 1 112355555444422 233443 4466654322
Q ss_pred CCCchhhhHHHHhhcCCccccCCHhHHHHHHHHHHHHhCCHHHHHHHHhh
Q 020581 257 NGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306 (324)
Q Consensus 257 ~~~~l~~~L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~~ 306 (324)
.-+ ...+...+--||+.+...+.|+-.+.+..-+.+.+|..|++.+++
T Consensus 75 ~~P--~~DF~lc~~Li~~~~q~~e~i~~l~~L~~lLE~c~F~~FW~~~~~ 122 (130)
T d1rz4a2 75 NLP--HTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE 122 (130)
T ss_dssp TTT--STHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCT
T ss_pred cCC--HHHHHHHHHHcChhcCCcHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 111 113445555678888888999999999999999999999998854
No 3
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.33 E-value=1.5e+02 Score=21.36 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=41.7
Q ss_pred hhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHhhhhhccCCCCCC-c-hhhhhcHHHHHHHHHHHHHHHHh
Q 020581 154 VIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSI-S-PLHYLNLEQLTKALTSLYNLYEA 231 (324)
Q Consensus 154 ~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~I~s~~~L~~~~~~~~f-~-~~~~~n~eql~kcl~sL~~lY~d 231 (324)
..++|+.|=+|. .++.+|.--..-|+.++.-.+|++ ...+...+....+ . ++...+.+++.+....++.+|+.
T Consensus 23 ~AW~~lnDs~r~--T~lcL~~~P~~IA~a~I~LA~~~~---~~~~p~~~~~~~Ww~~fd~~vt~e~i~~i~~~il~lYe~ 97 (113)
T d2ivxa2 23 TSYFMATNSLHL--TTFCLQYKPTVIACVCIHLACKWS---NWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 97 (113)
T ss_dssp HHHHHHHHHHHH--CCGGGTSCHHHHHHHHHHHHHHHH---TCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--CCeeeecCcHHHHHHHHHHHHHHh---CCCCCCCCCCCcHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 367888874431 456666555555666666555442 1122211111111 1 12345689999999999999976
No 4
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.83 E-value=11 Score=26.10 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=10.3
Q ss_pred CccccCCCCCcH
Q 020581 69 AIVGTCPFMCPE 80 (324)
Q Consensus 69 ~~vGtC~~MCPe 80 (324)
-+-|.|..|||.
T Consensus 51 MyCGNCYT~cp~ 62 (69)
T d2v4jb1 51 MYCGNCYTMCPA 62 (69)
T ss_dssp CCCCHHHHHCTT
T ss_pred eecCCccccCCC
Confidence 567999999996
No 5
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.88 E-value=2.6e+02 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 020581 127 DVRPLPVLEETLNYLLSL 144 (324)
Q Consensus 127 ~vRP~~vL~kT~~yLl~~ 144 (324)
|||.|.+|.+++.|....
T Consensus 2 Dl~~~~~ll~a~~~ra~~ 19 (181)
T d2ddha2 2 DINSLEGLTEAYKLRAAR 19 (181)
T ss_dssp CTTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 789999999999997654
No 6
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=8.79 E-value=1.8e+02 Score=19.91 Aligned_cols=19 Identities=26% Similarity=0.509 Sum_probs=15.5
Q ss_pred HHHHHHHhCCHHHHHHHHh
Q 020581 287 QALRYFQMGNYRRFLSTVA 305 (324)
Q Consensus 287 ~v~~A~~~~Ny~rFF~Ll~ 305 (324)
.++..+...||.+|..++.
T Consensus 62 klL~YLrk~d~~~Y~~li~ 80 (84)
T d1kuqa_ 62 RLLRYLQREDPERYRALIE 80 (84)
T ss_dssp HHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHH
Confidence 4667888999999998874
No 7
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.75 E-value=72 Score=22.12 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.7
Q ss_pred CCHhHHHHHHHHHHHHhCCHHHHHHHHhhCC
Q 020581 278 KSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308 (324)
Q Consensus 278 ~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~~~a 308 (324)
++|.+..+-....|+..+|.-.+..|+...+
T Consensus 2 ~~p~~~~~~~~~~a~~~~D~~~~~~l~a~D~ 32 (132)
T d2a15a1 2 QSPALIASQSSWRCVQAHDREGWLALMADDV 32 (132)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHcCCCe
Confidence 4788888888999999999999998885433
No 8
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=7.93 E-value=57 Score=18.11 Aligned_cols=10 Identities=50% Similarity=1.255 Sum_probs=6.1
Q ss_pred CccccCC-CCC
Q 020581 69 AIVGTCP-FMC 78 (324)
Q Consensus 69 ~~vGtC~-~MC 78 (324)
-+.|.|+ .||
T Consensus 4 cv~grcpsgmc 14 (30)
T d1mmca_ 4 CVRGRCPSGMC 14 (30)
T ss_dssp CSSSCCSTTCE
T ss_pred cccccCCCcch
Confidence 4567776 465
No 9
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=7.64 E-value=50 Score=19.53 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=4.2
Q ss_pred ccccCCC
Q 020581 70 IVGTCPF 76 (324)
Q Consensus 70 ~vGtC~~ 76 (324)
|+|||+.
T Consensus 1 V~G~CP~ 7 (35)
T d1pfva3 1 VKGTCPK 7 (35)
T ss_dssp EEEECTT
T ss_pred CeeECCC
Confidence 4566665
No 10
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.41 E-value=56 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.593 Sum_probs=7.4
Q ss_pred hhHHhhhhh
Q 020581 155 IHDFVFDRT 163 (324)
Q Consensus 155 ~y~Fl~DRl 163 (324)
.-+|+||||
T Consensus 49 ~tnYiWd~L 57 (59)
T d2ftxb1 49 KTKYIWERL 57 (59)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 458999997
Done!