Query 020583
Match_columns 324
No_of_seqs 135 out of 151
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 2E-105 5E-110 752.2 18.2 215 109-323 1-216 (294)
2 COG1216 Predicted glycosyltran 70.9 7.1 0.00015 36.4 4.7 94 225-318 85-182 (305)
3 PF03672 UPF0154: Uncharacteri 66.5 2.9 6.4E-05 32.9 1.1 17 32-48 3-19 (64)
4 cd04185 GT_2_like_b Subfamily 66.2 5.2 0.00011 33.6 2.6 41 223-263 78-118 (202)
5 TIGR01556 rhamnosyltran L-rham 64.3 5.7 0.00012 35.8 2.6 38 224-261 73-112 (281)
6 cd02526 GT2_RfbF_like RfbF is 63.0 8.8 0.00019 32.8 3.4 23 224-246 75-97 (237)
7 PF00535 Glycos_transf_2: Glyc 57.2 9.3 0.0002 29.6 2.4 38 223-260 77-114 (169)
8 cd06434 GT2_HAS Hyaluronan syn 57.1 6.2 0.00013 33.7 1.5 41 223-263 76-116 (235)
9 PRK01844 hypothetical protein; 55.7 6 0.00013 31.9 1.1 15 33-47 11-25 (72)
10 cd04186 GT_2_like_c Subfamily 55.3 13 0.00028 29.3 2.9 37 224-260 74-111 (166)
11 cd06433 GT_2_WfgS_like WfgS an 52.6 10 0.00022 30.7 2.0 36 223-258 74-110 (202)
12 cd06421 CESA_CelA_like CESA_Ce 52.3 12 0.00026 31.7 2.5 38 223-260 83-121 (234)
13 cd02525 Succinoglycan_BP_ExoA 51.6 12 0.00027 31.8 2.5 38 224-261 81-118 (249)
14 PF12621 DUF3779: Phosphate me 51.3 13 0.00027 30.4 2.4 43 214-260 34-76 (95)
15 PF01762 Galactosyl_T: Galacto 48.3 45 0.00098 29.1 5.5 97 134-252 6-105 (195)
16 PF13641 Glyco_tranf_2_3: Glyc 48.0 8.4 0.00018 32.9 0.9 42 223-264 85-126 (228)
17 PRK11677 hypothetical protein; 46.6 10 0.00022 33.4 1.1 19 33-51 7-25 (134)
18 PF14654 Epiglycanin_C: Mucin, 46.3 9.5 0.00021 32.7 0.9 29 24-52 9-42 (106)
19 PRK00523 hypothetical protein; 45.1 11 0.00024 30.4 1.1 15 33-47 12-26 (72)
20 PF06295 DUF1043: Protein of u 45.0 11 0.00023 32.3 1.0 20 32-51 2-21 (128)
21 cd06435 CESA_NdvC_like NdvC_li 44.9 13 0.00028 32.0 1.5 37 224-260 84-120 (236)
22 cd02510 pp-GalNAc-T pp-GalNAc- 42.7 24 0.00053 32.3 3.1 41 223-263 82-122 (299)
23 cd04195 GT2_AmsE_like GT2_AmsE 42.1 25 0.00054 29.3 2.8 39 223-261 79-118 (201)
24 PF12996 DUF3880: DUF based on 39.1 14 0.00029 28.8 0.7 26 219-254 13-38 (79)
25 PF12072 DUF3552: Domain of un 38.9 13 0.00027 33.8 0.6 18 33-50 3-20 (201)
26 cd02520 Glucosylceramide_synth 37.1 27 0.00059 29.6 2.4 37 223-259 85-121 (196)
27 cd06437 CESA_CaSu_A2 Cellulose 35.9 21 0.00046 30.9 1.5 38 223-260 86-123 (232)
28 cd00761 Glyco_tranf_GTA_type G 32.7 38 0.00082 25.3 2.2 37 224-260 77-114 (156)
29 PF11688 DUF3285: Protein of u 32.6 20 0.00043 26.7 0.7 27 23-50 16-42 (45)
30 PF01060 DUF290: Transthyretin 32.5 1.4E+02 0.003 23.2 5.4 19 290-308 62-80 (80)
31 cd06423 CESA_like CESA_like is 32.3 27 0.0006 26.7 1.5 38 224-261 78-116 (180)
32 cd00505 Glyco_transf_8 Members 31.3 68 0.0015 29.0 4.0 87 150-248 31-118 (246)
33 cd04184 GT2_RfbC_Mx_like Myxoc 31.0 40 0.00087 27.9 2.3 37 223-259 82-119 (202)
34 PRK14583 hmsR N-glycosyltransf 30.3 1.5E+02 0.0032 29.5 6.5 97 149-250 75-181 (444)
35 PF07976 Phe_hydrox_dim: Pheno 30.0 98 0.0021 27.4 4.7 72 118-197 33-125 (169)
36 cd04196 GT_2_like_d Subfamily 28.8 50 0.0011 27.4 2.5 26 223-248 78-103 (214)
37 CHL00123 rps6 ribosomal protei 27.8 46 0.00099 27.2 2.1 60 223-282 6-67 (97)
38 PF13506 Glyco_transf_21: Glyc 27.5 44 0.00096 29.3 2.1 28 223-250 30-57 (175)
39 PF13807 GNVR: G-rich domain o 27.2 46 0.001 25.8 1.9 16 34-49 60-75 (82)
40 PF00858 ASC: Amiloride-sensit 27.0 23 0.00051 33.4 0.3 19 32-50 411-429 (439)
41 cd04192 GT_2_like_e Subfamily 26.4 53 0.0011 27.5 2.3 34 223-256 81-114 (229)
42 cd06427 CESA_like_2 CESA_like_ 26.2 64 0.0014 28.3 2.9 38 223-260 83-122 (241)
43 PF06099 Phenol_hyd_sub: Pheno 25.7 1.1E+02 0.0024 24.0 3.7 41 257-309 1-42 (59)
44 PF07745 Glyco_hydro_53: Glyco 25.1 44 0.00096 33.2 1.8 42 135-192 43-86 (332)
45 cd02522 GT_2_like_a GT_2_like_ 24.3 56 0.0012 27.5 2.1 40 223-262 71-110 (221)
46 TIGR03469 HonB hopene-associat 23.8 77 0.0017 30.8 3.2 33 225-257 134-166 (384)
47 cd04194 GT8_A4GalT_like A4GalT 23.8 44 0.00095 30.0 1.4 86 151-248 32-118 (248)
48 cd06439 CESA_like_1 CESA_like_ 23.7 46 0.001 28.9 1.5 39 224-262 109-147 (251)
49 PLN02726 dolichyl-phosphate be 23.2 72 0.0016 28.2 2.7 37 223-259 92-128 (243)
50 PRK11677 hypothetical protein; 23.0 30 0.00066 30.5 0.2 26 33-58 3-28 (134)
51 PRK05454 glucosyltransferase M 22.0 2E+02 0.0042 31.4 6.0 108 148-258 123-255 (691)
52 COG3040 Blc Bacterial lipocali 21.7 79 0.0017 29.4 2.6 33 225-257 132-164 (174)
53 PF10111 Glyco_tranf_2_2: Glyc 21.6 1.1E+02 0.0024 28.4 3.6 94 153-247 2-111 (281)
54 cd06442 DPM1_like DPM1_like re 21.6 77 0.0017 26.7 2.4 34 223-256 77-110 (224)
55 cd06420 GT2_Chondriotin_Pol_N 21.1 70 0.0015 26.1 2.0 26 223-248 78-103 (182)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=2.3e-105 Score=752.25 Aligned_cols=215 Identities=68% Similarity=1.283 Sum_probs=211.2
Q ss_pred eeeeCCCCCCCCCCCceeecCCcccccccCCCCCCCCCCCCceEEEEEecccccccHHHHHhhcccCcEEEEEEecCCcc
Q 020583 109 IWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTT 188 (324)
Q Consensus 109 i~~~~~p~g~e~LP~giv~~~Sd~~lr~Lwg~p~~~~~~~~kyLla~aVG~kqk~~Vd~~vkKFs~nF~vmLFHYDG~vd 188 (324)
||+|++|+|+|+||+|||+++|||+||||||+|.+|...++|||||||||+|||++||++|+||++|||||||||||+||
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEEEeecccceeeccccCccccccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCC-c
Q 020583 189 EWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKG-L 267 (324)
Q Consensus 189 ~W~dleWS~~AIHvsa~kQtKWwfaKRFLHPDiVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~~s~-i 267 (324)
+|+|||||++||||+++|||||||||||||||||++|||||||||||+||||+|+|||+|||+|||||||||||++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeeeecCCceeEeeeccCCCCCCCCCCCCccceEEEeccccchhhHHhhhhhhc
Q 020583 268 TWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQ 323 (324)
Q Consensus 268 ~h~iT~R~~~~~vHr~~~~~~g~C~~~~~pPCTgFVEiMAPVFSR~AWRCvWhmIQ 323 (324)
||+||+|+++++|||.+.+++++|+++++||||||||||||||||+||||||||||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miq 216 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQ 216 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhccc
Confidence 99999999999999988888888999999999999999999999999999999999
No 2
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=70.88 E-value=7.1 Score=36.38 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=56.8
Q ss_pred ceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCce----eEeeeccCCCCCCCCCCCCcc
Q 020583 225 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDRE----VHKETEEKPGWCSNPHLPPCA 300 (324)
Q Consensus 225 YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~~s~i~h~iT~R~~~~~----vHr~~~~~~g~C~~~~~pPCT 300 (324)
|+|++++++|..++...++++++.+++.+-...-+++..+.+-...+..+..... .++..............+.|.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 4599999999999999999999999999888877777665432222222221110 011000000111111224444
Q ss_pred ceEEEeccccchhhHHhh
Q 020583 301 AFVEIMAPVFSRDAWRCV 318 (324)
Q Consensus 301 gFVEiMAPVFSR~AWRCv 318 (324)
+++..-+-.++|+|++.|
T Consensus 165 ~~~~G~~~li~~~~~~~v 182 (305)
T COG1216 165 ASLSGACLLIRREAFEKV 182 (305)
T ss_pred hhcceeeeEEcHHHHHHh
Confidence 567777778888888765
No 3
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.54 E-value=2.9 Score=32.88 Aligned_cols=17 Identities=47% Similarity=0.911 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhheeee
Q 020583 32 LIVTTFVGVVFGFFIGV 48 (324)
Q Consensus 32 ~i~~~~~~~~~gf~igi 48 (324)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888899999999864
No 4
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.20 E-value=5.2 Score=33.57 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=33.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEP 263 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~ 263 (324)
+.+||+++.|+|..++.--.+++++.+++.+..+..|..-.
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD 118 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc
Confidence 47999999999999998888888888887777777775543
No 5
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=64.29 E-value=5.7 Score=35.83 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=32.0
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHh--CCcccCCCc
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPGL 261 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~--gLeISQPAL 261 (324)
.+|||++.|+|..++.-.+++.++.+++. ..-+..|..
T Consensus 73 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 112 (281)
T TIGR01556 73 GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF 112 (281)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence 79999999999999988888888888776 566777764
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=62.97 E-value=8.8 Score=32.83 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.5
Q ss_pred cceEEEeecCccccCCCCHHHHH
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYI 246 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~ 246 (324)
.||||++.|+|..++.-..++++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHH
Confidence 58999999999999877677764
No 7
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=57.17 E-value=9.3 Score=29.60 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=29.5
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPA 260 (324)
+..|||++.|+|..++.-..+++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 45779999999999998899999999999776554433
No 8
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=57.05 E-value=6.2 Score=33.72 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=34.6
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEP 263 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~ 263 (324)
+.+|||++.|+|..++.-..++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 47999999999999998889999888887778877776543
No 9
>PRK01844 hypothetical protein; Provisional
Probab=55.70 E-value=6 Score=31.90 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheee
Q 020583 33 IVTTFVGVVFGFFIG 47 (324)
Q Consensus 33 i~~~~~~~~~gf~ig 47 (324)
|++.++|++.|||++
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777888888875
No 10
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.28 E-value=13 Score=29.30 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHh-CCcccCCC
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPG 260 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~-gLeISQPA 260 (324)
.+|||++.|+|...+....+++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc
Confidence 79999999999999887788888755443 44444443
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.59 E-value=10 Score=30.72 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=25.6
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHH-HhCCcccC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVR-KHGLEISQ 258 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk-~~gLeISQ 258 (324)
+..|||++.|+|..++.-...+.++... ..+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 4689999999999998877888774443 33444433
No 12
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=52.27 E-value=12 Score=31.70 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=31.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHH-hCCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK-HGLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~-~gLeISQPA 260 (324)
+.+|||.+.|+|..++.--.+++++.+.+ .++.+.++.
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 37999999999999998888999998877 666666654
No 13
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=51.64 E-value=12 Score=31.76 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=30.9
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 261 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPAL 261 (324)
.+||+.+.|+|..++.-..++.++..++.+..+.+...
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 69999999999999887788888877777777665443
No 14
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=51.34 E-value=13 Score=30.37 Aligned_cols=43 Identities=35% Similarity=0.545 Sum_probs=34.3
Q ss_pred ccccCccccccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 020583 214 KRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (324)
Q Consensus 214 KRFLHPDiVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPA 260 (324)
.-|+||.+-++--.|||+-|++||-.. -++-.++.|++||.-+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~----ei~~~~~~~v~~Sd~g 76 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQ----EIEETRKVGVPISDEG 76 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHH----HHHHhhcCCeEEECCC
Confidence 348999999999999999999999654 4455677777777544
No 15
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=48.30 E-value=45 Score=29.10 Aligned_cols=97 Identities=19% Similarity=0.397 Sum_probs=58.1
Q ss_pred ccccCCCCCCCCCCCCceEEEEEecccc--cccHHHHHhhcc-cCcEEEEEEecCCcccccccccccceEEEEEeecccc
Q 020583 134 LRRLWGNPNEDLTSQPKYLVTFTVGYDQ--KNNINAAIKKFS-DNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKW 210 (324)
Q Consensus 134 lr~Lwg~p~~~~~~~~kyLla~aVG~kq--k~~Vd~~vkKFs-~nF~vmLFHYDG~vd~W~dleWS~~AIHvsa~kQtKW 210 (324)
+|.-||++..-.. .+.-+.+-||... ...++..+++=+ ..=||+++-+ +|.+..+.. +.+ -.-+
T Consensus 6 IR~TW~~~~~~~~--~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~-----~~~~- 72 (195)
T PF01762_consen 6 IRETWGNQRNFKG--VRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTL-----AGLK- 72 (195)
T ss_pred HHHHHhcccccCC--CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHH-----HHHH-
Confidence 5778997664332 4566777788877 455666555422 3446776554 455544421 111 1112
Q ss_pred eeeccccCccccccceEEEeecCccccCCCCHHHHHHHHHHh
Q 020583 211 WYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKH 252 (324)
Q Consensus 211 wfaKRFLHPDiVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~ 252 (324)
|..+.+ .+++||+.-|||.-| +++++++..++.
T Consensus 73 w~~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~ 105 (195)
T PF01762_consen 73 WASKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSL 105 (195)
T ss_pred HHHhhC------CchhheeecCcEEEE---ehHHhhhhhhhc
Confidence 333322 258999999999987 667777777766
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=48.02 E-value=8.4 Score=32.86 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=29.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN 264 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~~ 264 (324)
+.+|||++.|+|..++.-..+++++.+...+..+.|+.....
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~ 126 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPD 126 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEET
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeec
Confidence 459999999999999988899999999778888877666433
No 17
>PRK11677 hypothetical protein; Provisional
Probab=46.56 E-value=10 Score=33.43 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhheeeeccc
Q 020583 33 IVTTFVGVVFGFFIGVSFP 51 (324)
Q Consensus 33 i~~~~~~~~~gf~igisfp 51 (324)
++..++|+++|||+|-..+
T Consensus 7 ~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4556667777777765443
No 18
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=46.28 E-value=9.5 Score=32.69 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=20.4
Q ss_pred CCCchhhH---HHHHHHHH--HHhhheeeecccc
Q 020583 24 RKTNESMR---LIVTTFVG--VVFGFFIGVSFPT 52 (324)
Q Consensus 24 ~~~~~~m~---~i~~~~~~--~~~gf~igisfp~ 52 (324)
-||..+.+ +|+.+++. +++|+|+|++|=+
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777 44444444 6789999999943
No 19
>PRK00523 hypothetical protein; Provisional
Probab=45.09 E-value=11 Score=30.39 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhheee
Q 020583 33 IVTTFVGVVFGFFIG 47 (324)
Q Consensus 33 i~~~~~~~~~gf~ig 47 (324)
|+..++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777788888875
No 20
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.95 E-value=11 Score=32.34 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhheeeeccc
Q 020583 32 LIVTTFVGVVFGFFIGVSFP 51 (324)
Q Consensus 32 ~i~~~~~~~~~gf~igisfp 51 (324)
.|+..++|+++||+++-.+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 36777888888888875544
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=44.88 E-value=13 Score=32.03 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=29.2
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPA 260 (324)
.||||.+.|.|..++.--+.++++.+++.+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999998888777888877766666666543
No 22
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=42.68 E-value=24 Score=32.25 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=35.8
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCccC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEP 263 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd~ 263 (324)
+..|||.+.|.|..++.--.+++++.+.+..-.+.-|.++.
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~ 122 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDV 122 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecc
Confidence 57899999999999998889999999998887777787653
No 23
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=42.12 E-value=25 Score=29.29 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=29.0
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHh-CCcccCCCc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPGL 261 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~-gLeISQPAL 261 (324)
+.+|||++.|+|..++.-..++.++.+.++ +..+.....
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 579999999999888777777777776543 566655543
No 24
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=39.11 E-value=14 Score=28.79 Aligned_cols=26 Identities=38% Similarity=0.741 Sum_probs=19.8
Q ss_pred ccccccceEEEeecCccccCCCCHHHHHHHHHHhCC
Q 020583 219 PDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGL 254 (324)
Q Consensus 219 PDiVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gL 254 (324)
..+...|||||++|.+ .++-.|+.|.
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G~ 38 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLGA 38 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcCC
Confidence 4778899999999975 4556666673
No 25
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.90 E-value=13 Score=33.82 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhheeeecc
Q 020583 33 IVTTFVGVVFGFFIGVSF 50 (324)
Q Consensus 33 i~~~~~~~~~gf~igisf 50 (324)
|+++++|+++|+++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777777655
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=37.13 E-value=27 Score=29.63 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=25.8
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQP 259 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQP 259 (324)
+.+|||++.|.|..++.--.+++++.....+..+.++
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 121 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTC 121 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEe
Confidence 5699999999998887766677766654444444333
No 27
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=35.88 E-value=21 Score=30.85 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=28.9
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPA 260 (324)
+.+|||++.|.|..++.-.++++..+....+..+.|+-
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~ 123 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTR 123 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecc
Confidence 47999999999999987777777766655555555553
No 28
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=32.66 E-value=38 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=25.6
Q ss_pred cceEEEeecCccccCCCCHHHH-HHHHHHhCCcccCCC
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEY-IKLVRKHGLEISQPG 260 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY-~~Ivk~~gLeISQPA 260 (324)
.+||+++.|+|..++....++. ....+..+..+.++.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc
Confidence 6999999999988877666665 333444456655544
No 29
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.63 E-value=20 Score=26.72 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCCchhhHHHHHHHHHHHhhheeeecc
Q 020583 23 NRKTNESMRLIVTTFVGVVFGFFIGVSF 50 (324)
Q Consensus 23 ~~~~~~~m~~i~~~~~~~~~gf~igisf 50 (324)
.||-..+++.+..+.+| ++||+||+++
T Consensus 16 VRKg~~SL~HF~LT~~g-ll~~lv~la~ 42 (45)
T PF11688_consen 16 VRKGGTSLFHFGLTAVG-LLGFLVGLAY 42 (45)
T ss_pred HHccCcchhHHHHHHHH-HHHHHHHHHH
Confidence 47888889977777666 5799999875
No 30
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=32.47 E-value=1.4e+02 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=15.7
Q ss_pred CCCCCCCCCccceEEEecc
Q 020583 290 WCSNPHLPPCAAFVEIMAP 308 (324)
Q Consensus 290 ~C~~~~~pPCTgFVEiMAP 308 (324)
.|.+...-||+..+++..|
T Consensus 62 ~C~~~~~~~C~r~~~~~IP 80 (80)
T PF01060_consen 62 KCNDEGYKPCQRKIKIDIP 80 (80)
T ss_pred eCCCCCCcCceEeEEEECC
Confidence 5877555899999999887
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=32.28 E-value=27 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=24.5
Q ss_pred cceEEEeecCccccCCCCHHHH-HHHHHHhCCcccCCCc
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEY-IKLVRKHGLEISQPGL 261 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY-~~Ivk~~gLeISQPAL 261 (324)
.+|||.+.|+|..++.-..+++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999988876555665 3333334444444443
No 32
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=31.33 E-value=68 Score=29.04 Aligned_cols=87 Identities=22% Similarity=0.117 Sum_probs=52.0
Q ss_pred ceEEEEEecccccccHHHHHhhc-ccCcEEEEEEecCCcccccccccccceEEEEEeecccceeeccccCccccccceEE
Q 020583 150 KYLVTFTVGYDQKNNINAAIKKF-SDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYI 228 (324)
Q Consensus 150 kyLla~aVG~kqk~~Vd~~vkKF-s~nF~vmLFHYDG~vd~W~dleWS~~AIHvsa~kQtKWwfaKRFLHPDiVa~YDYI 228 (324)
-.+..++-|++. ++.+++-+-. ..++.+-+..++- .++..+++.. ..-+++-|+| +.=|+++..||-|
T Consensus 31 ~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~~-------~~~~~~~y~R-L~i~~llp~~~kv 99 (246)
T cd00505 31 LRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDI--LDSVDSEHLK-------RPIKIVTLTK-LHLPNLVPDYDKI 99 (246)
T ss_pred eEEEEEEccccH-HHHHHHHHHHhccCceEEEEeccc--cCcchhhhhc-------CccccceeHH-HHHHHHhhccCeE
Confidence 445666666654 2333332211 2367777777653 4454444421 1123444444 5559998889999
Q ss_pred EeecCccccCCCCHHHHHHH
Q 020583 229 FIWDEDLGVEHFNAEEYIKL 248 (324)
Q Consensus 229 FLwDEDL~vd~f~~~rY~~I 248 (324)
...|.|+-|- -|+++.+++
T Consensus 100 lYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 100 LYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEcCCeeec-cCHHHHhhc
Confidence 9999999885 578888765
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=30.96 E-value=40 Score=27.95 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.8
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHH-HHhCCcccCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLV-RKHGLEISQP 259 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Iv-k~~gLeISQP 259 (324)
+.+|||++.|+|-.++.-..++.++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 468999999999988777778888777 4455555443
No 34
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=30.33 E-value=1.5e+02 Score=29.49 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=53.8
Q ss_pred CceEEEEEecccccccHHHHHhhcc----cCcEEEEEEecCCccccccc--cccc--ceEEEEE--eecccceeeccccC
Q 020583 149 PKYLVTFTVGYDQKNNINAAIKKFS----DNFTIVLFHYDGRTTEWNEF--EWSK--RAIHVSV--RKQTKWWYAKRFLH 218 (324)
Q Consensus 149 ~kyLla~aVG~kqk~~Vd~~vkKFs----~nF~vmLFHYDG~vd~W~dl--eWS~--~AIHvsa--~kQtKWwfaKRFLH 218 (324)
|+.-+.+++=-.. ..+.+.++..- ++++|++ .=||..|+..+. ++.. ..+++.. .+++|=--.+ +
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIiv-VdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN---~ 149 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVIA-INDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALR---M 149 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHH---H
Confidence 4566666654433 34545554331 4788655 458888776431 1111 1244333 4555521111 1
Q ss_pred ccccccceEEEeecCccccCCCCHHHHHHHHH
Q 020583 219 PDIVASYDYIFIWDEDLGVEHFNAEEYIKLVR 250 (324)
Q Consensus 219 PDiVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk 250 (324)
-=..+.|||+.+.|.|-.++.-..++..+-+.
T Consensus 150 gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~ 181 (444)
T PRK14583 150 GAAAARSEYLVCIDGDALLDKNAVPYLVAPLI 181 (444)
T ss_pred HHHhCCCCEEEEECCCCCcCHHHHHHHHHHHH
Confidence 11226799999999999887777777766554
No 35
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=30.00 E-value=98 Score=27.35 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCCCCceeecCCcccccccCCCCCCCCCCCCc-eEEEEEeccccc---ccHHH----------HHhhcc-------cCc
Q 020583 118 AERLPPKIVRAESDFYLRRLWGNPNEDLTSQPK-YLVTFTVGYDQK---NNINA----------AIKKFS-------DNF 176 (324)
Q Consensus 118 ~e~LP~giv~~~Sd~~lr~Lwg~p~~~~~~~~k-yLla~aVG~kqk---~~Vd~----------~vkKFs-------~nF 176 (324)
.++||+.-|.+-+|-...+|-- ..+..-+ .++.++=-..+. ..+++ ++++|. +-|
T Consensus 33 G~Rlp~~~v~r~aD~~p~~l~~----~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 33 GRRLPSAKVVRHADGNPVHLQD----DLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp TCB----EEEETTTTEEEEGGG----G--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred ccccCCceEEEEcCCCChhHhh----hcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 4589999999999988888743 2222233 444444333332 23333 344553 249
Q ss_pred EEEEEEecCCccccccccccc
Q 020583 177 TIVLFHYDGRTTEWNEFEWSK 197 (324)
Q Consensus 177 ~vmLFHYDG~vd~W~dleWS~ 197 (324)
+++|+|= ..++++||.+
T Consensus 109 ~~~~I~~----~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIHS----SPRDEVELFD 125 (169)
T ss_dssp EEEEEES----S-CCCS-GGG
T ss_pred EEEEEec----CCCCceeHHH
Confidence 9999983 5677788865
No 36
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.82 E-value=50 Score=27.38 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=17.8
Q ss_pred ccceEEEeecCccccCCCCHHHHHHH
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKL 248 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~I 248 (324)
+.+|||++.|+|...+.-...++++.
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHH
Confidence 57999999999965554444444444
No 37
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.79 E-value=46 Score=27.18 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=44.4
Q ss_pred ccceEEEeecCccccCCCC--HHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeEe
Q 020583 223 ASYDYIFIWDEDLGVEHFN--AEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHK 282 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~--~~rY~~Ivk~~gLeISQPALd~~s~i~h~iT~R~~~~~vHr 282 (324)
..||-+||.+-|+.-+... .++|-+++.+.|-+|-.---=....+.++|-+...+..++.
T Consensus 6 r~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~ 67 (97)
T CHL00123 6 NKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQM 67 (97)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEE
Confidence 5799999999999877666 68999999999988755222223467888877766644443
No 38
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=27.48 E-value=44 Score=29.28 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=21.3
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHH
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVR 250 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk 250 (324)
+.||||++-|+|+.++.-..++.+.-..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~ 57 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLA 57 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHh
Confidence 7899999999999997655555554443
No 39
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.18 E-value=46 Score=25.81 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=8.2
Q ss_pred HHHHHHHHhhheeeec
Q 020583 34 VTTFVGVVFGFFIGVS 49 (324)
Q Consensus 34 ~~~~~~~~~gf~igis 49 (324)
+...+|+++|+++|+.
T Consensus 60 lil~l~~~~Gl~lgi~ 75 (82)
T PF13807_consen 60 LILALGLFLGLILGIG 75 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 40
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=26.96 E-value=23 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhheeeecc
Q 020583 32 LIVTTFVGVVFGFFIGVSF 50 (324)
Q Consensus 32 ~i~~~~~~~~~gf~igisf 50 (324)
.-+.+-+|..+|+|+|+|+
T Consensus 411 ~~ll~~iGG~~gLflG~S~ 429 (439)
T PF00858_consen 411 SDLLSDIGGILGLFLGASV 429 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHhHHH
Confidence 4566779999999999997
No 41
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.42 E-value=53 Score=27.55 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEI 256 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeI 256 (324)
+.+|||++.|+|..++.--++++++.+.+.+-..
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 114 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGL 114 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcE
Confidence 4689999999999888767777777665554443
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=26.16 E-value=64 Score=28.32 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=27.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHh--CCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~--gLeISQPA 260 (324)
+.+|||++.|.|..++.-.+++.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 578999999999999877777777766543 33344443
No 43
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=25.67 E-value=1.1e+02 Score=23.97 Aligned_cols=41 Identities=34% Similarity=0.453 Sum_probs=25.9
Q ss_pred cCCCccCCC-CcceeeeeecCCceeEeeeccCCCCCCCCCCCCccceEEEeccc
Q 020583 257 SQPGLEPNK-GLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPV 309 (324)
Q Consensus 257 SQPALd~~s-~i~h~iT~R~~~~~vHr~~~~~~g~C~~~~~pPCTgFVEiMAPV 309 (324)
+||++|... ++ ++|-++.+..|-....- |-| .=|||+|.|-
T Consensus 1 ~~p~~d~~~ryV--Rv~~~~~~gfVEFeFaI---------G~P-eL~VELvLP~ 42 (59)
T PF06099_consen 1 SQPAFDQTRRYV--RVTGRRDDGFVEFEFAI---------GDP-ELFVELVLPR 42 (59)
T ss_pred CCCccccccCEE--EEecccCCCeEEEEEec---------CCc-ceeEEecCCH
Confidence 588898875 44 67777777666654322 111 2389999873
No 44
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=25.13 E-value=44 Score=33.19 Aligned_cols=42 Identities=31% Similarity=0.732 Sum_probs=27.0
Q ss_pred cccCCCCCCCCCCCCceEEEEEecccccccHHHHHhhcc-cCcEEEE-EEecCCcccccc
Q 020583 135 RRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFS-DNFTIVL-FHYDGRTTEWNE 192 (324)
Q Consensus 135 r~Lwg~p~~~~~~~~kyLla~aVG~kqk~~Vd~~vkKFs-~nF~vmL-FHYDG~vd~W~d 192 (324)
-|+|-+|.. -|....+.|-++.|+-. ..+.||| |||. |-|.|
T Consensus 43 lRvwv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYS---D~WaD 86 (332)
T PF07745_consen 43 LRVWVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYS---DFWAD 86 (332)
T ss_dssp EEE-SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SS---SS--B
T ss_pred EEeccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeeccc---CCCCC
Confidence 488998877 56777788888888764 5899999 9993 44544
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.30 E-value=56 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.9
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 262 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd 262 (324)
+..|||.+.|+|..++.-..++.+......+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 3489999999999988777777766666666555554443
No 46
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=23.78 E-value=77 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.1
Q ss_pred ceEEEeecCccccCCCCHHHHHHHHHHhCCccc
Q 020583 225 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEIS 257 (324)
Q Consensus 225 YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeIS 257 (324)
+|||++.|.|..++.-..++.++-+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999988888999998888876654
No 47
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=23.77 E-value=44 Score=29.97 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=50.0
Q ss_pred eEEEEEecccccccHHHHHhhcc-cCcEEEEEEecCCcccccccccccceEEEEEeecccceeeccccCccccccceEEE
Q 020583 151 YLVTFTVGYDQKNNINAAIKKFS-DNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIF 229 (324)
Q Consensus 151 yLla~aVG~kqk~~Vd~~vkKFs-~nF~vmLFHYDG~vd~W~dleWS~~AIHvsa~kQtKWwfaKRFLHPDiVa~YDYIF 229 (324)
.+..++.|+++.. .+++-+.+. .+..|-+..++- ..+.++.- .....++.-|+| ++=|+++..||.+.
T Consensus 32 ~~~il~~~is~~~-~~~L~~~~~~~~~~i~~~~i~~--~~~~~~~~-------~~~~~~~~~y~r-l~l~~ll~~~~rvl 100 (248)
T cd04194 32 DFYILNDDISEEN-KKKLKELLKKYNSSIEFIKIDN--DDFKFFPA-------TTDHISYATYYR-LLIPDLLPDYDKVL 100 (248)
T ss_pred EEEEEeCCCCHHH-HHHHHHHHHhcCCeEEEEEcCH--HHHhcCCc-------ccccccHHHHHH-HHHHHHhcccCEEE
Confidence 4555666654422 232222222 367777777642 22222210 112233444555 44499998999999
Q ss_pred eecCccccCCCCHHHHHHH
Q 020583 230 IWDEDLGVEHFNAEEYIKL 248 (324)
Q Consensus 230 LwDEDL~vd~f~~~rY~~I 248 (324)
..|-|+-+-. +++..+++
T Consensus 101 ylD~D~lv~~-di~~L~~~ 118 (248)
T cd04194 101 YLDADIIVLG-DLSELFDI 118 (248)
T ss_pred EEeCCEEecC-CHHHHhcC
Confidence 9999999876 88888764
No 48
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=23.72 E-value=46 Score=28.89 Aligned_cols=39 Identities=5% Similarity=-0.008 Sum_probs=29.7
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 262 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd 262 (324)
..|||++.|.|...+.--..+.++.++..+..+.++...
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 459999999999998777778888776566666555443
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=23.21 E-value=72 Score=28.20 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=29.2
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQP 259 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQP 259 (324)
+..|||++.|.|...+.-..+++++.+.+.+.++...
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 4689999999999887777888888877777665443
No 50
>PRK11677 hypothetical protein; Provisional
Probab=22.95 E-value=30 Score=30.46 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhheeeecccccccccc
Q 020583 33 IVTTFVGVVFGFFIGVSFPTLSLTKL 58 (324)
Q Consensus 33 i~~~~~~~~~gf~igisfp~~~~~k~ 58 (324)
.+.+++|.|+|++||..+-.+..+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 57788999999999999887765543
No 51
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=21.97 E-value=2e+02 Score=31.41 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCceEEEEEecccccc----cHHHHHhh-----cccCcEEEEEEecCCcccc--------cccc--cc-cceEEEEEeec
Q 020583 148 QPKYLVTFTVGYDQKN----NINAAIKK-----FSDNFTIVLFHYDGRTTEW--------NEFE--WS-KRAIHVSVRKQ 207 (324)
Q Consensus 148 ~~kyLla~aVG~kqk~----~Vd~~vkK-----Fs~nF~vmLFHYDG~vd~W--------~dle--WS-~~AIHvsa~kQ 207 (324)
.++.-|.|++=-...+ .+.++.+. ..++|++.+.. ||.-++- .++. .. +.-|+|..+..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLd-D~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILS-DTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 4566677776544432 34444442 24689986665 8866552 2210 10 11355543322
Q ss_pred ccceeeccccCcccc----ccceEEEeecCccccCCCCHHHHHHHHH-HhCCcccC
Q 020583 208 TKWWYAKRFLHPDIV----ASYDYIFIWDEDLGVEHFNAEEYIKLVR-KHGLEISQ 258 (324)
Q Consensus 208 tKWwfaKRFLHPDiV----a~YDYIFLwDEDL~vd~f~~~rY~~Ivk-~~gLeISQ 258 (324)
--..|.----|.+ ..||||.+.|-|..++.-.+.+.+..+. ..++-|-|
T Consensus 202 --n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 --NVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred --CCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 2233432212222 6899999999999999999999999886 45666666
No 52
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=21.70 E-value=79 Score=29.40 Aligned_cols=33 Identities=9% Similarity=0.447 Sum_probs=28.5
Q ss_pred ceEEEeecCccccCCCCHHHHHHHHHHhCCccc
Q 020583 225 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEIS 257 (324)
Q Consensus 225 YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeIS 257 (324)
=+|+||.---..++.-+.++|++++|+.|.+++
T Consensus 132 r~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~ 164 (174)
T COG3040 132 REYLWLLSRTPTLSQETLKRMLEIAKRRGFDVS 164 (174)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 478888888888888889999999999999865
No 53
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=21.64 E-value=1.1e+02 Score=28.36 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEEeccccc-----ccHHHHHh---hc--ccCcEEEEEEecCCccccc-cc-cc--ccceE-EEEEeecccce-eeccc
Q 020583 153 VTFTVGYDQK-----NNINAAIK---KF--SDNFTIVLFHYDGRTTEWN-EF-EW--SKRAI-HVSVRKQTKWW-YAKRF 216 (324)
Q Consensus 153 la~aVG~kqk-----~~Vd~~vk---KF--s~nF~vmLFHYDG~vd~W~-dl-eW--S~~AI-Hvsa~kQtKWw-faKRF 216 (324)
+.++|..+.. +++..+++ ++ +.++.|++..++. .++|+ ++ +. ....+ .|....+.+.| .++-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 4677777664 23333343 33 3588888777755 44441 11 11 22223 12222122222 22211
Q ss_pred cCccccccceEEEeecCccccCCCCHHHHHH
Q 020583 217 LHPDIVASYDYIFIWDEDLGVEHFNAEEYIK 247 (324)
Q Consensus 217 LHPDiVa~YDYIFLwDEDL~vd~f~~~rY~~ 247 (324)
---=-.+.-|||+++|-|+-++.-.++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1111236899999999999998777777777
No 54
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=21.60 E-value=77 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=23.1
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEI 256 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeI 256 (324)
+..|||++.|+|..++.-..+++++.+.+.+.++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 110 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADL 110 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 4469999999997766555566666654444444
No 55
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=21.11 E-value=70 Score=26.06 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=18.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHH
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKL 248 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~I 248 (324)
+.+|||++.|+|..++.--+++.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 57899999999987754444544443
Done!