Query 020583
Match_columns 324
No_of_seqs 135 out of 151
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 59.8 4.6 0.00016 33.5 2.4 38 223-260 87-125 (255)
2 3bcv_A Putative glycosyltransf 54.1 9.2 0.00032 31.3 3.3 38 223-260 83-120 (240)
3 2ffu_A Ppgalnact-2, polypeptid 32.1 23 0.00077 33.5 2.5 39 223-261 145-183 (501)
4 2ls4_A High affinity copper up 37.0 10 0.00036 24.2 0.0 15 32-46 5-19 (26)
5 3sd4_A PHD finger protein 20; 29.5 31 0.0011 25.3 2.4 14 178-191 42-55 (69)
6 2c0n_A A197; thermophil protei 28.7 21 0.00073 32.3 1.7 30 224-257 53-85 (203)
7 1xhb_A Polypeptide N-acetylgal 25.6 36 0.0012 31.7 2.6 39 223-261 113-151 (472)
8 2eqm_A PHD finger protein 20-l 24.9 40 0.0014 26.3 2.4 24 178-201 49-73 (88)
9 4fix_A UDP-galactofuranosyl tr 23.0 35 0.0012 34.6 2.2 37 224-260 268-305 (657)
10 1omz_A Alpha-1,4-N-acetylhexos 20.7 1.5E+02 0.0051 27.8 5.8 101 148-252 27-134 (293)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=59.79 E-value=4.6 Score=33.54 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=30.6
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHh-CCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~-gLeISQPA 260 (324)
+..|||++.|+|..++.-..++.++.++++ +..+..+.
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEec
Confidence 478999999999999887788888888876 56655544
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=54.10 E-value=9.2 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPA 260 (324)
+..|||++.|+|..++.--.+++++.+++.+.++...+
T Consensus 83 a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 83 ATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp CCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred cCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 46799999999999988889999999998777766544
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=32.06 E-value=23 Score=33.52 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=34.7
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 261 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPAL 261 (324)
+..|||++.|+|..++.--++++++.+++..-.+..|.+
T Consensus 145 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 145 AQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp CCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 468999999999999999999999999988777777765
No 4
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=37.00 E-value=10 Score=24.17 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhee
Q 020583 32 LIVTTFVGVVFGFFI 46 (324)
Q Consensus 32 ~i~~~~~~~~~gf~i 46 (324)
+++++++|+.+|+|+
T Consensus 5 l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFL 19 (26)
Confidence 577888888888876
No 5
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=29.54 E-value=31 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.2
Q ss_pred EEEEEecCCccccc
Q 020583 178 IVLFHYDGRTTEWN 191 (324)
Q Consensus 178 vmLFHYDG~vd~W~ 191 (324)
.+|.||||--+.|+
T Consensus 42 ~~~VhfdGw~~~~D 55 (69)
T 3sd4_A 42 KVLIHFKRWNHRYD 55 (69)
T ss_dssp EEEEEETTSCGGGC
T ss_pred EEEEEeCCCCCCCC
Confidence 46999999655554
No 6
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=28.71 E-value=21 Score=32.32 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=22.4
Q ss_pred cceEEEeecCc---cccCCCCHHHHHHHHHHhCCccc
Q 020583 224 SYDYIFIWDED---LGVEHFNAEEYIKLVRKHGLEIS 257 (324)
Q Consensus 224 ~YDYIFLwDED---L~vd~f~~~rY~~Ivk~~gLeIS 257 (324)
.|||+++.|.| ++.+.-++.|++ +.|.+|.
T Consensus 53 ~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 53 DYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp TCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 69999999999 876666666666 5566653
No 7
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=25.56 E-value=36 Score=31.66 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=33.1
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 261 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPAL 261 (324)
+..|||++.|+|..++.--.+++++.+++..-.+..|.+
T Consensus 113 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~ 151 (472)
T 1xhb_A 113 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 151 (472)
T ss_dssp CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeee
Confidence 568999999999999999999999999887765555654
No 8
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=24.90 E-value=40 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=14.9
Q ss_pred EEEEEecCCcccccc-cccccceEE
Q 020583 178 IVLFHYDGRTTEWNE-FEWSKRAIH 201 (324)
Q Consensus 178 vmLFHYDG~vd~W~d-leWS~~AIH 201 (324)
-+|+||||--+.||+ .+++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 489999996666653 333443444
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=23.01 E-value=35 Score=34.57 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.9
Q ss_pred cceEEEeecCccccCCCCHHHHHHHHHHh-CCcccCCC
Q 020583 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPG 260 (324)
Q Consensus 224 ~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~-gLeISQPA 260 (324)
.+|||++.|+|..++.-.++++++.+++. ..-+..|.
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~ 305 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ 305 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence 68999999999999988899999998876 33344443
No 10
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=20.68 E-value=1.5e+02 Score=27.79 Aligned_cols=101 Identities=11% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCceEEEEEecccccccHHHHHhhcc--cCcEEEEEEecCC---cc--cccccccccceEEEEEeecccceeeccccCcc
Q 020583 148 QPKYLVTFTVGYDQKNNINAAIKKFS--DNFTIVLFHYDGR---TT--EWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPD 220 (324)
Q Consensus 148 ~~kyLla~aVG~kqk~~Vd~~vkKFs--~nF~vmLFHYDG~---vd--~W~dleWS~~AIHvsa~kQtKWwfaKRFLHPD 220 (324)
..++-+.|-. ++......++|+..+ +.=+=++...-+. .. .|..+ +..++.|....+.+==.-.||+..+
T Consensus 27 ~~~FTvvi~t-y~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~--~~~~vpv~v~~~~~nsLnnRF~p~~ 103 (293)
T 1omz_A 27 LDSFTLIMQT-YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSL--GPHPIPVIFKPQTANKMRNRLQVFP 103 (293)
T ss_dssp TTCEEEEEEE-SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHT--CCCSSCEEEEECSSCCGGGGGSCCT
T ss_pred CCceEEEEEe-ecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhcccc--CCCCccEEEEeCCCCchhhccCCCc
Confidence 3455555533 445566777777664 3433344444331 11 24332 2223445555554444567887433
Q ss_pred ccccceEEEeecCccccCCCCHHHHHHHHHHh
Q 020583 221 IVASYDYIFIWDEDLGVEHFNAEEYIKLVRKH 252 (324)
Q Consensus 221 iVa~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~ 252 (324)
--.-|.||..|||+.+..-+++.=|+.-+++
T Consensus 104 -~i~T~AVLslDDDv~l~~~el~faF~vWr~~ 134 (293)
T 1omz_A 104 -EVETNAVLMVDDDTLISAQDLVFAFSIWQQF 134 (293)
T ss_dssp -TCCSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred -cCCcCEEEEEcCCCCCCHHHHHHHHHHHHHC
Confidence 3458999999999999999999888888754
Done!