Query 020583
Match_columns 324
No_of_seqs 135 out of 151
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 05:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vl2a1 c.26.2.1 (A:2-169) Arg 35.1 8.8 0.00064 27.1 2.1 35 148-185 1-35 (168)
2 d1omza_ c.68.1.15 (A:) Alpha-1 31.3 7.5 0.00055 28.4 1.2 35 222-256 79-113 (265)
3 d2inwa1 d.110.8.1 (A:4-120) Hy 29.2 16 0.0012 28.8 2.8 87 207-307 13-111 (117)
4 d1xhba2 c.68.1.17 (A:95-422) P 23.6 20 0.0015 29.2 2.6 41 222-262 105-145 (328)
5 d1qg8a_ c.68.1.1 (A:) Spore co 21.7 23 0.0017 27.4 2.5 30 223-252 87-116 (255)
6 d1vyua1 b.34.2.1 (A:39-174) SH 21.6 14 0.001 28.9 1.2 40 175-215 23-70 (136)
7 d1k92a1 c.26.2.1 (A:1-188) Arg 18.5 33 0.0024 24.4 2.6 39 146-185 8-46 (188)
8 d1foba_ c.1.8.3 (A:) Beta-1,4- 18.4 30 0.0022 29.7 2.8 41 135-192 46-88 (334)
9 d1dkca_ g.3.4.2 (A:) Antifunga 16.4 22 0.0016 22.9 0.9 18 286-303 5-24 (38)
10 d2qeda1 d.157.1.2 (A:1-251) Gl 16.0 50 0.0036 27.2 3.5 37 221-258 9-48 (251)
No 1
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=35.11 E-value=8.8 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCceEEEEEecccccccHHHHHhhcccCcEEEEEEecC
Q 020583 148 QPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDG 185 (324)
Q Consensus 148 ~~kyLla~aVG~kqk~~Vd~~vkKFs~nF~vmLFHYDG 185 (324)
+.|.+||++=|.++......+.+. +|++..+|.|.
T Consensus 1 K~KIvvalSGGvDS~vl~~lL~~~---~~~v~a~~~~~ 35 (168)
T d1vl2a1 1 KEKVVLAYSGGLDTSVILKWLCEK---GFDVIAYVANV 35 (168)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT---TCEEEEEEEES
T ss_pred CCEEEEEeccHHHHHHHHHHHHHc---CCeEEEEEccc
Confidence 468999999999998877766554 78888888765
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.28 E-value=7.5 Score=28.39 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=25.0
Q ss_pred cccceEEEeecCccccCCCCHHHHHHHHHHhCCcc
Q 020583 222 VASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEI 256 (324)
Q Consensus 222 Va~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeI 256 (324)
.+.-|||++.|+|..++.-..++.++.+.++.-.+
T Consensus 79 ~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred hCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 34679999999998886666666666666554443
No 3
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}
Probab=29.19 E-value=16 Score=28.78 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=62.1
Q ss_pred cccceeeccccCc-----cccccceEEEeecCccccCCCCHHHHH-------HHHHHhCCcccCCCccCCCCcceeeeee
Q 020583 207 QTKWWYAKRFLHP-----DIVASYDYIFIWDEDLGVEHFNAEEYI-------KLVRKHGLEISQPGLEPNKGLTWQMTKR 274 (324)
Q Consensus 207 QtKWwfaKRFLHP-----DiVa~YDYIFLwDEDL~vd~f~~~rY~-------~Ivk~~gLeISQPALd~~s~i~h~iT~R 274 (324)
.++||..||-+-| =|.+....=||+|-+--+-.|+.+... .++++--+-+++=.|+|+. .|.+|+.
T Consensus 13 ~~p~WGL~~~itP~fGARLVQeG~rLh~LaDRagi~G~Fs~~~~~~Ld~aFP~~ikqlE~ml~sGeL~pr~--q~~vTl~ 90 (117)
T d2inwa1 13 DRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLLMKQLELMLTGGELNPRH--QHTVTLY 90 (117)
T ss_dssp TSCCCSCCCCSSSEEEEEEEEETTEEECCGGGEEEESCCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTS--CCCEEEE
T ss_pred CCcCCCCcccccccccceeeecCceEEEeeccCCceeecCHHHHHHHHHHHHHHHHHHHHHhccCCCCccc--cceEEEE
Confidence 4799999998877 356678888999999888999986644 4555555666667787774 6788888
Q ss_pred cCCceeEeeeccCCCCCCCCCCCCccceEEEec
Q 020583 275 RGDREVHKETEEKPGWCSNPHLPPCAAFVEIMA 307 (324)
Q Consensus 275 ~~~~~vHr~~~~~~g~C~~~~~pPCTgFVEiMA 307 (324)
.++. -|...+..+| |+|=++.
T Consensus 91 ~~gl-----------tCeADtLGS~-GYVYiaI 111 (117)
T d2inwa1 91 AKGL-----------TCEADTLGSC-GYVYLAV 111 (117)
T ss_dssp ETTE-----------EEEEECTTCS-SEEEEEE
T ss_pred eCCe-----------EEeccCCCCc-cEEEEEE
Confidence 6552 2443445555 7888774
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.64 E-value=20 Score=29.16 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=35.3
Q ss_pred cccceEEEeecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 020583 222 VASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 262 (324)
Q Consensus 222 Va~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~gLeISQPALd 262 (324)
.+.-|||++.|+|..++.-..++.++.+++..-.+..|.++
T Consensus 105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~ 145 (328)
T d1xhba2 105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIID 145 (328)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEE
T ss_pred hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEeccee
Confidence 35679999999999999999999999999988888777654
No 5
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=21.72 E-value=23 Score=27.37 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=21.6
Q ss_pred ccceEEEeecCccccCCCCHHHHHHHHHHh
Q 020583 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH 252 (324)
Q Consensus 223 a~YDYIFLwDEDL~vd~f~~~rY~~Ivk~~ 252 (324)
+..|||+++|+|-..+.--.++.++.++++
T Consensus 87 a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 87 AEGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred cccccccccccccccccchHHHHHHHHHhC
Confidence 368999999988666554466666666654
No 6
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.62 E-value=14 Score=28.86 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=29.0
Q ss_pred CcEE-EEEEecCCccccc-------ccccccceEEEEEeecccceeecc
Q 020583 175 NFTI-VLFHYDGRTTEWN-------EFEWSKRAIHVSVRKQTKWWYAKR 215 (324)
Q Consensus 175 nF~v-mLFHYDG~vd~W~-------dleWS~~AIHvsa~kQtKWwfaKR 215 (324)
.|.| -||.|||..|+-- -|.- .+-|||.-..-.-||.++.
T Consensus 23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~-gdil~v~~~~d~~WW~~r~ 70 (136)
T d1vyua1 23 AFAVRTNVSYCGVLDEECPVQGSGVNFEA-KDFLHIKEKYSNDWWIGRL 70 (136)
T ss_dssp CEEEEESSCEEGGGCTTCSSTTCBCEECT-TCEEEEEEECSSSEEEEEE
T ss_pred eEEEEEeeccCCCCCCCCcccCcccCCCC-CCEEEEEeccCCCcEEEEe
Confidence 5655 7899999888741 1443 3478888887889999974
No 7
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.51 E-value=33 Score=24.41 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=25.0
Q ss_pred CCCCceEEEEEecccccccHHHHHhhcccCcEEEEEEecC
Q 020583 146 TSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDG 185 (324)
Q Consensus 146 ~~~~kyLla~aVG~kqk~~Vd~~vkKFs~nF~vmLFHYDG 185 (324)
+..+|.+||++=|.++-.....+.++ ..+...+-++|-.
T Consensus 8 ~~gkKv~vA~SGGvDSsvll~lL~~~-g~~v~~~~~~~~~ 46 (188)
T d1k92a1 8 PVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQ 46 (188)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCC
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHc-CCcCeEEeeecCC
Confidence 44568999999999987776655443 3344444444433
No 8
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=18.45 E-value=30 Score=29.75 Aligned_cols=41 Identities=22% Similarity=0.551 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCCCCceEEEEEecccccccHHHHHhhcc-cCcEEEE-EEecCCcccccc
Q 020583 135 RRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFS-DNFTIVL-FHYDGRTTEWNE 192 (324)
Q Consensus 135 r~Lwg~p~~~~~~~~kyLla~aVG~kqk~~Vd~~vkKFs-~nF~vmL-FHYDG~vd~W~d 192 (324)
-|+|-+|.. |....+.|+++++... ..+.||| |||+. .|.|
T Consensus 46 lrvW~~p~~--------------g~~~~~~~~~~~~~a~~~Gm~vll~~hysd---~Wad 88 (334)
T d1foba_ 46 QRVWVNPSD--------------GSYDLDYNLELAKRVKAAGMSLYLDLHLSD---TWAD 88 (334)
T ss_dssp EEECSCCTT--------------CTTCHHHHHHHHHHHHHTTCEEEEEECCSS---SCCB
T ss_pred eeeeeCCCC--------------CcCcHHHHHHHHHHHHHCCCEEEEEecCCC---cccC
Confidence 357876654 4456788999999885 5888888 99965 4544
No 9
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=16.43 E-value=22 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.864 Sum_probs=13.2
Q ss_pred cCCCCCCCCCCCC--ccceE
Q 020583 286 EKPGWCSNPHLPP--CAAFV 303 (324)
Q Consensus 286 ~~~g~C~~~~~pP--CTgFV 303 (324)
+..|+|..+-+|| |++|-
T Consensus 5 ~nggrcn~~~gppyccs~~c 24 (38)
T d1dkca_ 5 KNGGRCNASAGPPYCCSSYC 24 (38)
T ss_dssp SSSEEECTTSCCCCCSSSEE
T ss_pred cCCceecccCCCCceechhh
Confidence 3457898888888 77764
No 10
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Probab=16.00 E-value=50 Score=27.19 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=27.5
Q ss_pred ccccceEEEeecCc---cccCCCCHHHHHHHHHHhCCcccC
Q 020583 221 IVASYDYIFIWDED---LGVEHFNAEEYIKLVRKHGLEISQ 258 (324)
Q Consensus 221 iVa~YDYIFLwDED---L~vd~f~~~rY~~Ivk~~gLeISQ 258 (324)
+-+.|-|++ .||+ +-||.-+++++++.++++|+.|..
T Consensus 9 ~~DNy~YLi-~~~~~~avvIDPg~~~~il~~i~~~~~~l~~ 48 (251)
T d2qeda1 9 FQDNYIWVL-TNDEGRCVIVDPGEAAPVLKAIAEHKWMPEA 48 (251)
T ss_dssp TTTEEEEEE-ECTTSEEEEECCSCHHHHHHHHHHHTCEEEE
T ss_pred ecCeEEEEE-EeCCCeEEEEcCCccHHHHHHHHHcCCceeE
Confidence 344566654 4544 678999999999999999998743
Done!