BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020585
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ER SHD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77


>pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein
          Length = 163

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)

Query: 218 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQL 277
           DG+   K G KH +  +F R +  C     E+K    R H G I EI+ K T D     L
Sbjct: 14  DGFI--KEGIKHYE--KFLRRF--CKPEVLEIK----RVHRGSIEEIVRKETED-----L 58

Query: 278 SRRYSAGNMMSIQEERPDKVSS 299
           + R   G+ + + ++R ++VSS
Sbjct: 59  TNRILPGSFVMVMDKRGEEVSS 80


>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
           N-Acetylglucosamine- 6-Phosphate Deacetylase From
           Bacillus Subtilis
 pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
           N-Acetylglucosamine- 6-Phosphate Deacetylase From
           Bacillus Subtilis
          Length = 396

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 256 SHDGQITEIIYKGTHDHP 273
           +HDG +TE+I  G H HP
Sbjct: 244 AHDGFVTELIADGIHSHP 261


>pdb|1ODH|A Chain A, Structure Of The Gcm Domain Bound To Dna
          Length = 174

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 257 HDGQITEIIYKGTHDHPKPQLSRRYSAGNMM 287
           HDG+      KG HDHP+P+      A   M
Sbjct: 139 HDGRFIFFQSKGEHDHPRPETKLEAEARRAM 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,107,306
Number of Sequences: 62578
Number of extensions: 364258
Number of successful extensions: 456
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 5
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)