Query 020585
Match_columns 324
No_of_seqs 212 out of 749
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.3E-31 1.5E-35 207.1 5.5 65 212-276 10-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.3E-31 2.2E-35 207.0 5.9 65 212-276 13-78 (78)
3 2rpr_A Flywch-type zinc finger 65.3 2.7 9.4E-05 32.1 1.8 51 213-275 21-74 (87)
4 1odh_A MGCM1; transcription fa 40.9 22 0.00075 31.5 3.7 22 257-278 139-160 (174)
5 1cz6_A Protein (androctonin); 33.8 9.7 0.00033 23.8 0.2 8 238-245 16-23 (26)
6 1xiw_B T-cell surface glycopro 14.6 28 0.00097 26.4 -0.6 28 217-244 17-54 (79)
7 1xiw_A T-cell surface glycopro 5.9 1.2E+02 0.004 24.8 -0.1 10 236-245 71-80 (105)
8 3g12_A Putative lactoylglutath 5.8 2.4E+02 0.0082 21.3 1.7 21 253-273 106-126 (128)
9 2ysa_A Retinoblastoma-binding 5.2 3.1E+02 0.011 19.6 1.8 18 234-251 3-27 (55)
10 4a42_A GH89_CBM32-4, alpha-N-a 5.2 4.5E+02 0.015 21.1 3.1 11 215-225 94-104 (149)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=4.3e-31 Score=207.12 Aligned_cols=65 Identities=54% Similarity=1.001 Sum_probs=60.9
Q ss_pred CCCCCCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCCCC
Q 020585 212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (324)
Q Consensus 212 ~~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~P~ 276 (324)
...+++|||+|||||||.|||++|||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 3457899999999999999999999999999999999999999986 6789999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=6.3e-31 Score=207.04 Aligned_cols=65 Identities=52% Similarity=0.980 Sum_probs=60.5
Q ss_pred CCCCCCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCCCC
Q 020585 212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (324)
Q Consensus 212 ~~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~P~ 276 (324)
...+++|||+|||||||.|||++|||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3457899999999999999999999999999999999999999985 7789999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=65.34 E-value=2.7 Score=32.07 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=33.3
Q ss_pred CCCCCCCccccccCCccCCCCCCCCccccccc---cccccccceeecCCCCEEEEEEccccCCCCC
Q 020585 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275 (324)
Q Consensus 213 ~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~---~~C~akK~Vqrs~Dg~i~~i~Y~G~HnH~~P 275 (324)
..+.-|||...+--+ ...+.|.+|+. .+|.|+-... .++ ++-.+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~--~~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ--GHR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE--TTE----EEECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc--CCC----EECCCCcCCCCc
Confidence 456789998775321 12368999997 3799874433 222 346789999753
No 4
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=40.94 E-value=22 Score=31.48 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=15.3
Q ss_pred CCCCEEEEEEccccCCCCCCCC
Q 020585 257 HDGQITEIIYKGTHDHPKPQLS 278 (324)
Q Consensus 257 ~Dg~i~~i~Y~G~HnH~~P~~~ 278 (324)
+||......-+|.|+|++|...
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCCH
T ss_pred EcCCEEEEecccccCCCCCCCc
Confidence 4444444556899999999853
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=33.82 E-value=9.7 Score=23.79 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred cccccccc
Q 020585 238 SYYKCTHP 245 (324)
Q Consensus 238 sYYrCt~~ 245 (324)
-||||+++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 49999975
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=14.56 E-value=28 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=18.9
Q ss_pred CCCccccccCCcc--------C--CCCCCCCccccccc
Q 020585 217 DDGYNWRKYGQKH--------V--KGSEFPRSYYKCTH 244 (324)
Q Consensus 217 ~DGY~WRKYGQK~--------I--kGs~~pRsYYrCt~ 244 (324)
.+++.|.|-|... + +...-||+||.|..
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 6678899988642 1 23445899999943
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=5.92 E-value=1.2e+02 Score=24.77 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.1
Q ss_pred CCcccccccc
Q 020585 236 PRSYYKCTHP 245 (324)
Q Consensus 236 pRsYYrCt~~ 245 (324)
+|.||+|...
T Consensus 71 ~sG~Y~C~~~ 80 (105)
T 1xiw_A 71 QSGYYVCYPR 80 (105)
T ss_dssp HCEEEEEEET
T ss_pred CCceEEEccC
Confidence 8999999643
No 8
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=5.84 E-value=2.4e+02 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.261 Sum_probs=11.2
Q ss_pred eeecCCCCEEEEEEccccCCC
Q 020585 253 FERSHDGQITEIIYKGTHDHP 273 (324)
Q Consensus 253 Vqrs~Dg~i~~i~Y~G~HnH~ 273 (324)
.=++.||+.+++...+.|.|.
T Consensus 106 ~~~DPdGn~iel~~~~~~~~~ 126 (128)
T 3g12_A 106 IVLDPDGHSIELCELEGHHHH 126 (128)
T ss_dssp EEECTTCCEEEEEC-------
T ss_pred EEECCCCCEEEEEEecccccc
Confidence 346789999998888887664
No 9
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.19 E-value=3.1e+02 Score=19.60 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=11.1
Q ss_pred CCCCc--cccccc-----ccccccc
Q 020585 234 EFPRS--YYKCTH-----PNCEVKK 251 (324)
Q Consensus 234 ~~pRs--YYrCt~-----~~C~akK 251 (324)
.-|+. .|||.. ++|+..+
T Consensus 3 ~~p~~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 3 SGSSGYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CSSSSCCCTTTCCTTSCGGGCSGGG
T ss_pred CCCCCCccccCCCcCcccccCCCCC
Confidence 34444 499986 4787543
No 10
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=5.19 E-value=4.5e+02 Score=21.07 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=8.9
Q ss_pred CCCCCcccccc
Q 020585 215 PSDDGYNWRKY 225 (324)
Q Consensus 215 ~~~DGY~WRKY 225 (324)
..+||-+|++|
T Consensus 94 ~S~DG~~W~~~ 104 (149)
T 4a42_A 94 ISNDGTEWTKI 104 (149)
T ss_dssp EESSSSSCEEE
T ss_pred EEcCCCeEeEe
Confidence 35899999985
Done!