BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020586
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana
GN=RCD1 PE=1 SV=1
Length = 589
Score = 301 bits (771), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/304 (53%), Positives = 198/304 (65%), Gaps = 20/304 (6%)
Query: 1 MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
MF +G + V +LDV R SS AR LFQKQ+EIT K RGDANVRYAWL + L
Sbjct: 281 MFAVGTASLGHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVL 340
Query: 61 STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
S ++M GLG GA KS YG+G+HL AA CP SA Y DVDENGVR+MVLCRVIMGNME
Sbjct: 341 SAVMMQGLGVGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNME 400
Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGHL 178
L QF E++D+GVDD+++P++YIVWN+NMNTHIFPEFVV FK S+ N EG+L
Sbjct: 401 LLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNL 460
Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGG-SQGKAPSTSSSTPRAP 237
I ++ L+G L + S+ G G A S SST R P
Sbjct: 461 IAKRDNSGVT--------LEGPKDLPPQLE--------SNQGARGSGSANSVGSSTTR-P 503
Query: 238 KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
KSPWMPFP LFA+IS+KV+ M I+ Y+ R KK+ R +FV+KLR+IVGDDLLRSTI
Sbjct: 504 KSPWMPFPTLFAAISHKVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTI 563
Query: 298 TALQ 301
T LQ
Sbjct: 564 TTLQ 567
>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis
thaliana GN=SRO1 PE=1 SV=2
Length = 568
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 197/304 (64%), Gaps = 19/304 (6%)
Query: 1 MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
MF +G + V+ LDV + SS AR LFQKQ +IT K RGDAN+RYAW+ K L
Sbjct: 277 MFALGAATLGHVESLDVYQFSSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVL 336
Query: 61 STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
S ++M+GLG GA KS YG+GVH AA+CP SA Y D+D+NGVRHMVLCRVIMGNME
Sbjct: 337 SAVMMHGLGVGGAFIKKSMYGVGVH--AANCPYFSARYCDIDDNGVRHMVLCRVIMGNME 394
Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI 179
PL Q+ E++D+GVDD+++P+HY++WNMNMNTHI+PEFVVSFK S N EG+++
Sbjct: 395 PLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNIL 454
Query: 180 -RSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPK 238
++S+ S LT +G +G S + G VS+ S S + + S
Sbjct: 455 PTTQSRHESSGLTL--EGPKG----SPSNEPGRVSNGGSGSEKNSSSSRRPRSPI----- 503
Query: 239 SPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-DDLLRSTI 297
MPFP+LF +IS+K++ K M+ I Y+ R KKV+R +F K L +IVG DDLL STI
Sbjct: 504 ---MPFPLLFKAISSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLISTI 560
Query: 298 TALQ 301
T LQ
Sbjct: 561 TGLQ 564
>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis
thaliana GN=SRO2 PE=1 SV=1
Length = 323
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 59/278 (21%)
Query: 23 ASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKS---T 79
A LA F +F + K GDANV+Y W A S+ + +I YG + ++ +
Sbjct: 91 AKFLA-FRIFTDA--VARKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGS 147
Query: 80 YGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSG 139
+GIG+HL + C +AS T+ DE G+R+++LCRVI+G E + G+KQ +PSS +FDSG
Sbjct: 148 HGIGIHLVPSKCSLLAASATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSG 207
Query: 140 VDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQG 199
VDDL NPR+Y++W+ NMN+ I P ++VSF+
Sbjct: 208 VDDLHNPRNYVIWSCNMNSCILPSYIVSFR----------------------------SP 239
Query: 200 HLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKV 259
LR+ S+G S SS PW+ F L + +S + P
Sbjct: 240 RLRV------------------SRGGFASRPSS-------PWVSFASLMSMLSTSMDPSR 274
Query: 260 MEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
M I Y+ FR +K+ RD V+K+R + GD+LL I
Sbjct: 275 MNLIIRTYDDFRKRKIRRDQLVRKMREVAGDNLLAEII 312
>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis
thaliana GN=SRO3 PE=1 SV=2
Length = 305
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 149/300 (49%), Gaps = 65/300 (21%)
Query: 2 FLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDANVRYAWLATS 56
FL GM S ++ I+ V++ + L+ A+F +F+ E + K G AN+RY W + S
Sbjct: 54 FLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGS 113
Query: 57 KGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCR 113
K + +I YG + ++ ++G+G+HL +A + DE G+++++LCR
Sbjct: 114 KEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLCR 173
Query: 114 VIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSN 173
VI+G E + G+KQ +PSS FDSGVD+L+NPR Y++W+ NMN++I P ++VSFK
Sbjct: 174 VILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK---- 229
Query: 174 VEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSST 233
HL+R GL G R
Sbjct: 230 --SHLLR---------------GLIGRAR------------------------------- 241
Query: 234 PRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLL 293
SP + F +L + +S + M I Y+ FR +K+ R+ V+K+R +VGD+LL
Sbjct: 242 -----SPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKIREVVGDNLL 296
>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis
thaliana GN=SRO5 PE=1 SV=1
Length = 309
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 61/287 (21%)
Query: 22 SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 81
S + L F++FQ+ +++ + G A V+Y W + SK L T+ YG ++G
Sbjct: 82 SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139
Query: 82 IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 140
G++L+ + P D E+G+R ++LCRV++G E + G+ + PSS +FDSGV
Sbjct: 140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199
Query: 141 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGH 200
DDL + + YIVW+ +MNTH+ PEF+V K N LT S + L+
Sbjct: 200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFN----------------LTRSPKRLR-- 241
Query: 201 LRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVM 260
SPWM FP+L ++S + P +
Sbjct: 242 --------------------------------------SPWMAFPVLIKALSKFLPPSQI 263
Query: 261 EQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLR 307
I Y+ + +++ R + ++++R I GD LL I A C H ++
Sbjct: 264 LVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKA--CGHKVQ 308
>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis
thaliana GN=SRO4 PE=2 SV=2
Length = 316
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 46 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENG 105
A V+Y K L ++MYG + + + + D S+S +E+G
Sbjct: 122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDNAPLQCMI------DPSSS---CNEDG 172
Query: 106 VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFV 165
+ ++ R+IMG E + T Q +PSS +FDSGVD L +P YI+W+ +MNTH+ PEFV
Sbjct: 173 ISFLLFSRIIMGKSE-VVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFV 231
Query: 166 VSFK 169
V K
Sbjct: 232 VCIK 235
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 235 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLR 294
+ PKSPW+ FP+L SIS ++ + I Y+ + ++++R + +++LR I GD LL
Sbjct: 243 KNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLV 302
Query: 295 STITAL 300
I ++
Sbjct: 303 QIIKSV 308
>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1
Length = 656
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 14 ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 73
I ++R +A L +++ ++Q++I N + N R + T ++ + +G A
Sbjct: 500 IEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFNRSCA 557
Query: 74 STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTKQ 128
+YG G + A + +Y+ D NG +HM + RV+ G + P K
Sbjct: 558 GKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKN 617
Query: 129 FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
H ++ FDS ++ ++P+ ++V+ + +PE++++F
Sbjct: 618 PHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 654
>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3
Length = 1817
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 14 ILDVQRCSSASLLARFELFQKQLEITNKCRGDA-NVRYAWLATSKGALSTMIMYGLGHCG 72
I ++R + +L R++ ++K ++ N G+ N ++ + T +L + G
Sbjct: 1661 IEKIERIQNPALWRRYQAYKKSMDEKN---GNVRNEKHLFHGTEASSLPQLNSNGFNRSY 1717
Query: 73 ASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTK 127
A + YG G + A + +Y+ D NG ++M RV+ GN + P ++
Sbjct: 1718 AGKNATAYGKGTYFAVKASYSACDTYSRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSR 1777
Query: 128 QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
+++ +D+ D+ +NP ++V+ N +PE++++F+
Sbjct: 1778 DPQNAADLYDTVTDNDKNPSIFVVFYDN---QTYPEYLITFR 1816
>sp|Q54YW4|Y8045_DICDI Probable poly [ADP-ribose] polymerase DDB_G0278045 OS=Dictyostelium
discoideum GN=DDB_G0278045 PE=4 SV=3
Length = 337
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 9 SSGVDILDVQRCSSASLLARFELFQKQL----EITNKCRGDANVRYAWLATS-KGALSTM 63
S+ +I+ ++R + SL F+ +K+L +++N ++ + + A K S+
Sbjct: 58 SNSFEIIKIERIQNKSLWRNFDESRKRLNEKYQVSNLDFLESTLFHGTRANDPKLIFSSK 117
Query: 64 IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLF 123
+ + +G ++ YGIG++ A + + S+ + +G + M LCRV++GN P
Sbjct: 118 VGFDIG----KSSFGNYGIGLYFALNASYSNNYSFEESPTSGCKQMFLCRVLLGNSAP-- 171
Query: 124 PGTKQFHPSSEDFDSGVDDLQNP--RHYIVWNMNMNTHIFPEFVVSFK 169
P K+ DS D ++ P +I + N +P++++S++
Sbjct: 172 PTQKELKN-----DSTQDSIKGPGGEMFI---LKSNHTAYPDYLISYR 211
>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3
Length = 1801
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 14 ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 73
I ++R + L ++ +K ++ N N + + T G++ + G A
Sbjct: 1645 IEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 1702
Query: 74 STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFPGTKQ 128
YG G + A + + +Y+ D NG +H+ RV+ GN + P +K
Sbjct: 1703 GKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKN 1762
Query: 129 FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
++ +D+ D++ +P ++ + + +PE++++F+
Sbjct: 1763 PQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 1800
>sp|Q8CFF0|PAR11_MOUSE Poly [ADP-ribose] polymerase 11 OS=Mus musculus GN=Parp11 PE=2 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 107 RHMVLCRVIMGNMEPLFPGTKQFHPSSED------FDSGVDDLQNPRHYIVWNMNMNTHI 160
+ M L RV++G+ + +K P S+D +DS VDD NP+ ++V++ N I
Sbjct: 268 KSMFLARVLIGDY--INGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDAN---QI 322
Query: 161 FPEFVVSF 168
+PE+++ F
Sbjct: 323 YPEYLIDF 330
>sp|Q9NR21|PAR11_HUMAN Poly [ADP-ribose] polymerase 11 OS=Homo sapiens GN=PARP11 PE=1 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 107 RHMVLCRVIMGNMEPLFPGTKQFHPSSED------FDSGVDDLQNPRHYIVWNMNMNTHI 160
+ M L RV++G+ + +K P S+D +DS VDD NP+ ++V++ N I
Sbjct: 268 KSMFLARVLIGDY--INGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDAN---QI 322
Query: 161 FPEFVVSF 168
+PE+++ F
Sbjct: 323 YPEYLIDF 330
>sp|Q8C1B2|PARPT_MOUSE TCDD-inducible poly [ADP-ribose] polymerase OS=Mus musculus
GN=Tiparp PE=2 SV=1
Length = 657
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 8 PSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD---ANVRYAWLATSKGALSTMI 64
P IL + R + L +++ +K+ + K G N R+ + TS+ + +
Sbjct: 486 PEFKYRILQILRVQNQFLWEKYK--RKKEYMNRKMSGRDRIINERHLFHGTSQDVVDGIC 543
Query: 65 MYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNM--- 119
+ CG T +G G + A + S +++ GV M L +V+ G
Sbjct: 544 KHNFDPRVCGKHAT--MFGQGSYFAKKA--SYSHNFSKKSSKGVHFMFLAKVLTGRYTMG 599
Query: 120 -------EPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 172
P+ PG+ +S+ +DS VD+ P+ ++++N + + +P FV+ ++ S
Sbjct: 600 SHGMRRPPPVNPGSV----TSDLYDSCVDNFFEPQIFVIFNDDQS---YPYFVIQYEEVS 652
Query: 173 N 173
N
Sbjct: 653 N 653
>sp|Q7Z3E1|PARPT_HUMAN TCDD-inducible poly [ADP-ribose] polymerase OS=Homo sapiens
GN=TIPARP PE=2 SV=1
Length = 657
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 8 PSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD---ANVRYAWLATSKGALSTMI 64
P IL + R + L +++ +K+ + K G N R+ + TS+ + +
Sbjct: 486 PEFKYRILQILRVQNQFLWEKYK--RKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGIC 543
Query: 65 MYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNM--- 119
+ CG T +G G + A + S +++ GV M L +V+ G
Sbjct: 544 KHNFDPRVCGKHAT--MFGQGSYFAKKA--SYSHNFSKKSSKGVHFMFLAKVLTGRYTMG 599
Query: 120 -------EPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 172
P+ PG+ +S+ +DS VD+ P+ ++++N + + +P FV+ ++ S
Sbjct: 600 SHGMRRPPPVNPGSV----TSDLYDSCVDNFFEPQIFVIFNDDQS---YPYFVIQYEEVS 652
Query: 173 N 173
N
Sbjct: 653 N 653
>sp|Q60216|TRAN4_ECOLX Protein TraN OS=Escherichia coli GN=traN PE=4 SV=2
Length = 448
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 231 SSTPRAPKSPWMPFPML-----FASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLR 285
SS RA ++PW FP + S++N+ + +Q + L +++ DD V +L+
Sbjct: 2 SSYSRAERAPWGDFPKVVRNGDLGSLTNEPEYQAAKQGDAEAALNLVERLISDDTVAQLK 61
Query: 286 LIVGDDLLR 294
++GDD R
Sbjct: 62 TLIGDDKPR 70
>sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo sapiens GN=PARP10 PE=1 SV=2
Length = 1025
Score = 35.0 bits (79), Expect = 0.74, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 10 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
S + ++ V+R S L ++EL++++L +C + + T+ A+ + +G
Sbjct: 846 SSIRVVRVERVSHPLLQQQYELYRERL--LQRCERRPVEQVLYHGTTAPAVPDICAHGFN 903
Query: 70 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGN---------ME 120
+ YG GV+ A + Y+ + +G + + + RV+ G+
Sbjct: 904 RSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAP 963
Query: 121 PLF-PGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVS 167
PL PG +DS VD + P +++++ +T P +++
Sbjct: 964 PLRGPGHVLLR-----YDSAVDCICQPSIFVIFH---DTQALPTHLIT 1003
>sp|Q43857|INVA_VICFA Acid beta-fructofuranosidase OS=Vicia faba GN=VCINV PE=2 SV=1
Length = 642
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 15 LDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGAS 74
+D++ + ++A FE+ ++ LE T + + + A+ +GAL +Y L G S
Sbjct: 457 VDIETATQLDIVAEFEIDKEALEKTAQSNVEYECNTSGGASRRGALGPFGLYVLADNGLS 516
Query: 75 TTKSTY-----GIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTK 127
Y GI L + C D S S D + + I G++ P+ G K
Sbjct: 517 EYTPVYFYVVKGINGKLHTSFCSDQSRSSLAND--------VHKQIYGSVVPVLEGEK 566
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 36 LEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTS 95
L++ R N+ Y+W A +G+L T ++G G C + T+ VHL A + ++
Sbjct: 1646 LQLQAAVRDGTNISYSWTAQQEGSLIT--LFGSGKCFSLTSLKASTYYVHLRATNMLGSA 1703
Query: 96 ASYTDVD 102
A+ +D
Sbjct: 1704 AANRTID 1710
>sp|Q6P698|PLSL_DANRE Plastin-2 OS=Danio rerio GN=lcp1 PE=2 SV=1
Length = 624
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 258 KVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQT 317
+++++IS +L + K+ D+F K + + ++ ++ A+ K G+ CSVA TS Q+
Sbjct: 52 EIIQEISRTMDLNQDGKITFDEFAKVVHDLKSSEVAKTFRKAINKKEGI-CSVAGTSEQS 110
Query: 318 TVQH 321
QH
Sbjct: 111 GTQH 114
>sp|Q9V2G4|RFCS_PYRAB Replication factor C small subunit OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rfcS PE=1 SV=1
Length = 1437
Score = 33.1 bits (74), Expect = 3.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 256 SPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQ 301
S K++E I ++ +FR + +N +D K+LR I ++ L T LQ
Sbjct: 1259 SSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQ 1304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,310,164
Number of Sequences: 539616
Number of extensions: 4597894
Number of successful extensions: 12846
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12812
Number of HSP's gapped (non-prelim): 39
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)