Query 020586
Match_columns 324
No_of_seqs 170 out of 752
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01439 TCCD_inducible_PARP_li 100.0 1.7E-35 3.6E-40 249.1 10.0 114 50-168 1-121 (121)
2 cd01438 tankyrase_like Tankyra 100.0 1.8E-34 4E-39 264.7 16.0 152 9-171 52-221 (223)
3 PF00644 PARP: Poly(ADP-ribose 100.0 3E-32 6.4E-37 246.5 10.3 154 1-170 21-206 (206)
4 PF12174 RST: RCD1-SRO-TAF4 (R 100.0 6.1E-31 1.3E-35 201.6 8.9 69 235-303 2-70 (70)
5 cd01437 parp_like Poly(ADP-rib 99.9 1.7E-25 3.7E-30 218.2 10.5 153 2-169 157-347 (347)
6 PLN03124 poly [ADP-ribose] pol 99.8 4.6E-20 9.9E-25 191.2 11.4 146 12-172 460-640 (643)
7 PLN03123 poly [ADP-ribose] pol 99.8 4.5E-19 9.9E-24 191.3 10.5 145 12-171 799-978 (981)
8 cd01341 ADP_ribosyl ADP_ribosy 99.8 4.2E-19 9.1E-24 152.3 6.4 110 50-164 1-137 (137)
9 PLN03122 Poly [ADP-ribose] pol 99.7 9E-18 1.9E-22 178.2 8.1 145 12-172 626-806 (815)
10 KOG1037 NAD+ ADP-ribosyltransf 98.2 4.1E-07 8.9E-12 93.9 1.1 95 45-141 364-461 (531)
11 PF12767 SAGA-Tad1: Transcript 92.4 0.67 1.4E-05 43.6 8.4 66 242-307 9-81 (252)
12 PF12509 DUF3715: Protein of u 91.7 0.5 1.1E-05 42.1 6.4 119 20-142 1-126 (165)
13 KOG0034 Ca2+/calmodulin-depend 89.9 0.65 1.4E-05 42.2 5.4 58 242-299 84-151 (187)
14 PF02671 PAH: Paired amphipath 74.9 7.5 0.00016 26.9 4.6 33 258-290 2-34 (47)
15 PF13833 EF-hand_8: EF-hand do 73.8 3.7 7.9E-05 28.7 2.8 45 242-286 5-53 (54)
16 PF08349 DUF1722: Protein of u 62.6 21 0.00045 29.7 5.6 47 243-289 54-100 (117)
17 PHA01748 hypothetical protein 60.5 24 0.00052 26.1 5.0 51 251-304 5-56 (60)
18 KOG4177 Ankyrin [Cell wall/mem 59.0 2.5 5.4E-05 48.0 -0.8 102 12-120 998-1113(1143)
19 cd01436 Dipth_tox_like Mono-AD 58.2 12 0.00025 32.2 3.3 50 51-104 2-54 (147)
20 PRK00819 RNA 2'-phosphotransfe 58.0 8 0.00017 35.0 2.4 33 48-88 94-126 (179)
21 PF09851 SHOCT: Short C-termin 57.9 25 0.00055 22.5 4.2 29 261-289 3-31 (31)
22 PF01885 PTS_2-RNA: RNA 2'-pho 54.3 10 0.00022 34.3 2.5 33 48-88 105-137 (186)
23 PF15633 Tox-ART-HYD1: HYD1 si 50.6 12 0.00026 30.7 2.1 42 51-94 1-43 (96)
24 cd00213 S-100 S-100: S-100 dom 49.0 70 0.0015 24.4 6.2 44 258-301 5-61 (88)
25 COG1859 KptA RNA:NAD 2'-phosph 48.7 14 0.00031 34.3 2.6 27 45-71 117-143 (211)
26 PTZ00184 calmodulin; Provision 48.5 29 0.00063 28.2 4.2 60 241-300 63-129 (149)
27 PF13405 EF-hand_6: EF-hand do 48.1 11 0.00025 23.5 1.3 28 259-286 1-28 (31)
28 PF09454 Vps23_core: Vps23 cor 47.9 73 0.0016 24.1 5.9 38 260-297 25-62 (65)
29 cd05031 S-100A10_like S-100A10 47.5 56 0.0012 25.6 5.5 32 259-290 6-42 (94)
30 smart00027 EH Eps15 homology d 46.9 50 0.0011 25.9 5.2 44 242-285 27-71 (96)
31 smart00027 EH Eps15 homology d 45.3 36 0.00078 26.7 4.1 45 255-300 4-53 (96)
32 smart00862 Trans_reg_C Transcr 45.3 33 0.00071 25.1 3.7 51 255-306 6-60 (78)
33 cd00383 trans_reg_C Effector d 44.8 26 0.00057 26.7 3.2 51 255-306 24-77 (95)
34 cd05030 calgranulins Calgranul 44.5 77 0.0017 24.7 5.9 33 259-291 6-43 (88)
35 PF00036 EF-hand_1: EF hand; 40.6 13 0.00027 23.5 0.6 27 260-286 2-28 (29)
36 PTZ00315 2'-phosphotransferase 40.3 50 0.0011 35.2 5.3 32 49-88 477-509 (582)
37 cd05025 S-100A1 S-100A1: S-100 37.8 60 0.0013 25.2 4.3 40 261-300 9-61 (92)
38 PTZ00183 centrin; Provisional 35.8 75 0.0016 26.2 4.9 77 242-320 70-153 (158)
39 PRK09108 type III secretion sy 34.5 90 0.002 31.1 5.9 59 247-305 189-247 (353)
40 KOG0425 Ubiquitin-protein liga 32.9 1.2E+02 0.0025 27.3 5.6 37 246-289 120-161 (171)
41 cd00051 EFh EF-hand, calcium b 32.6 43 0.00093 22.1 2.4 43 242-284 17-62 (63)
42 cd00052 EH Eps15 homology doma 32.2 99 0.0021 21.6 4.4 47 242-288 16-63 (67)
43 PRK02998 prsA peptidylprolyl i 31.9 55 0.0012 31.2 3.8 31 268-298 29-59 (283)
44 TIGR00328 flhB flagellar biosy 31.3 1.1E+02 0.0024 30.5 5.9 59 247-305 187-245 (347)
45 PRK12721 secretion system appa 31.0 1.1E+02 0.0024 30.4 5.9 57 249-305 189-245 (349)
46 PF00486 Trans_reg_C: Transcri 30.6 51 0.0011 24.2 2.7 52 255-307 6-60 (77)
47 smart00054 EFh EF-hand, calciu 30.4 26 0.00056 19.4 0.8 24 263-286 5-28 (29)
48 PF13720 Acetyltransf_11: Udp 30.3 2.5E+02 0.0054 22.0 6.6 55 247-301 20-75 (83)
49 PRK05702 flhB flagellar biosyn 29.8 1.2E+02 0.0026 30.3 5.9 59 247-305 194-252 (359)
50 PRK06298 type III secretion sy 29.5 1.2E+02 0.0027 30.3 5.9 60 246-305 187-246 (356)
51 TIGR01404 FlhB_rel_III type II 29.4 1.2E+02 0.0027 30.0 5.9 58 248-305 187-244 (342)
52 PRK12772 bifunctional flagella 27.7 1.2E+02 0.0027 32.4 5.9 55 251-305 454-508 (609)
53 PTZ00184 calmodulin; Provision 27.5 1.5E+02 0.0032 23.9 5.2 46 242-287 28-76 (149)
54 cd05030 calgranulins Calgranul 26.7 81 0.0018 24.6 3.3 46 242-287 27-80 (88)
55 PTZ00183 centrin; Provisional 26.7 69 0.0015 26.4 3.1 45 242-286 107-154 (158)
56 PRK03095 prsA peptidylprolyl i 26.6 76 0.0016 30.3 3.7 30 269-298 29-58 (287)
57 PRK12557 H(2)-dependent methyl 26.5 84 0.0018 31.0 4.1 58 246-304 272-339 (342)
58 cd05029 S-100A6 S-100A6: S-100 26.3 1.1E+02 0.0024 24.1 4.0 47 242-288 29-81 (88)
59 KOG4613 Predicted component of 26.2 73 0.0016 27.2 3.1 39 262-305 41-79 (133)
60 PRK10167 hypothetical protein; 25.8 1.7E+02 0.0038 26.2 5.6 46 244-289 96-141 (169)
61 PRK08156 type III secretion sy 25.6 1.6E+02 0.0034 29.6 5.9 60 246-305 181-240 (361)
62 PF09009 Exotox-A_cataly: Exot 25.6 93 0.002 28.5 3.8 73 18-100 25-99 (236)
63 PRK10701 DNA-binding transcrip 25.1 77 0.0017 28.0 3.3 50 255-305 162-214 (240)
64 COG3710 CadC DNA-binding winge 25.1 63 0.0014 28.1 2.6 52 254-306 31-84 (148)
65 cd08533 SAM_PNT-ETS-1,2 Steril 25.0 46 0.001 25.7 1.6 29 273-302 41-69 (71)
66 PRK10766 DNA-binding transcrip 24.6 72 0.0016 27.5 3.0 51 254-305 159-212 (221)
67 cd05022 S-100A13 S-100A13: S-1 24.5 1.1E+02 0.0023 24.4 3.6 48 242-289 26-78 (89)
68 PRK12468 flhB flagellar biosyn 24.4 1.7E+02 0.0037 29.6 5.9 58 248-305 195-252 (386)
69 PRK13109 flhB flagellar biosyn 24.4 1.7E+02 0.0038 29.2 5.9 60 246-305 195-254 (358)
70 cd00171 Sec7 Sec7 domain; Doma 24.3 82 0.0018 28.3 3.3 31 272-302 147-182 (185)
71 PF06122 TraH: Conjugative rel 24.0 94 0.002 30.9 3.9 15 275-289 68-82 (361)
72 PF10015 DUF2258: Uncharacteri 23.6 60 0.0013 25.5 2.0 37 246-282 19-61 (75)
73 cd05023 S-100A11 S-100A11: S-1 23.1 96 0.0021 24.5 3.1 47 242-288 28-82 (89)
74 PRK12773 flhB flagellar biosyn 22.6 1.8E+02 0.0039 31.5 5.8 54 252-305 490-543 (646)
75 cd08531 SAM_PNT-ERG_FLI-1 Ster 21.5 64 0.0014 25.1 1.7 29 273-302 43-71 (75)
76 cd08538 SAM_PNT-ESE-2-like Ste 21.1 91 0.002 24.6 2.6 28 273-302 46-73 (78)
77 PF06738 DUF1212: Protein of u 20.9 1.7E+02 0.0038 25.7 4.7 36 254-289 61-96 (193)
No 1
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=100.00 E-value=1.7e-35 Score=249.13 Aligned_cols=114 Identities=24% Similarity=0.470 Sum_probs=101.2
Q ss_pred EeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCCCCcccCCccccCCC--CcEEEEEeeeccCCccccCCC--
Q 020586 50 YAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDEN--GVRHMVLCRVIMGNMEPLFPG-- 125 (324)
Q Consensus 50 ~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~~s~~S~~Y~~~d~~--G~r~mlLcrVllG~~~~v~pg-- 125 (324)
+|||||+.+++..|+++||+++.++.++++||+|||||+ +++ +|++||..+++ |.++|||||||+|+++...++
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~-~~s-~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~~~~ 78 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAK-NAS-YSHQYSKKSPKADGLKEMFLARVLTGDYTQGHPGYR 78 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCCCCCCccCCeeeccc-Chh-hhhcccccCcCCCCcEEEEEEEEEecceecCCCccc
Confidence 489999999999999999999998878999999999994 655 59999976665 999999999999999866543
Q ss_pred ---CCCCCCCCCCCcccccCCCCCcEEEEEeCCCCccccceeEEEE
Q 020586 126 ---TKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168 (324)
Q Consensus 126 ---s~q~~ps~~~yDSvVd~~~np~~yVV~~~~mNtqiyPeYvIty 168 (324)
.++..+++++|||+||++.+|++||||+++ ||||||||+|
T Consensus 79 ~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~~~---q~yPeYlI~y 121 (121)
T cd01439 79 RPPLKPSGVELDRYDSCVDNVSNPSIFVIFSDV---QAYPEYLITY 121 (121)
T ss_pred CCCCccCCCCCCCccceeCCCCCCCEEEEEeCC---ccceeEEEEC
Confidence 355567789999999999999999999985 9999999997
No 2
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=1.8e-34 Score=264.70 Aligned_cols=152 Identities=18% Similarity=0.334 Sum_probs=122.8
Q ss_pred CCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCc
Q 020586 9 SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 88 (324)
Q Consensus 9 ~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp 88 (324)
|.+.+|++|+||||+.||.+|+.+|++|+. +.....||++|||||+ .+..|+++|||++.+. .++|||+|||||
T Consensus 52 ~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~--~~~~~~ne~~LfHGt~--~~~~I~~~GFd~r~~~-~g~~fGkGiYFA- 125 (223)
T cd01438 52 FNRYNIIRIQKVVNKKLRERYCHRQKEIAE--ENHNHHNERMLFHGSP--FINAIIHKGFDERHAY-IGGMFGAGIYFA- 125 (223)
T ss_pred cccccEEEEEecCCHHHHHHHHHHHHHHHH--hhCCCcceEEEeecCc--chhHHHHhCCCccccc-cCceeeeeeeec-
Confidence 456899999999999999999999988876 4556789999999998 4679999999998764 589999999999
Q ss_pred CCCCcccCCccccCC---------CC-----cEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccCCCC----CcEEE
Q 020586 89 ASCPDTSASYTDVDE---------NG-----VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQN----PRHYI 150 (324)
Q Consensus 89 ~~~s~~S~~Y~~~d~---------~G-----~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~~~n----p~~yV 150 (324)
+++++ |++||.... ++ .+.||||||++|++....+..... +.+.+|||+++.... .+|||
T Consensus 126 ~~ask-S~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLGk~~~~~~~~~~~-~~P~G~dSv~g~Ps~~~~~~~EfV 203 (223)
T cd01438 126 ENSSK-SNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLGKSFLQFSAMKMA-HAPPGHHSVIGRPSVNGLAYAEYV 203 (223)
T ss_pred cchhh-hccccccccccccCcccccccccccceeEEEEEEEecceeeccCCcccC-CCCCCCcceEcCCCCCCcccCEEE
Confidence 67775 999975421 11 478999999999987654443222 334589999986432 47999
Q ss_pred EEeCCCCccccceeEEEEEec
Q 020586 151 VWNMNMNTHIFPEFVVSFKFS 171 (324)
Q Consensus 151 V~~~~mNtqiyPeYvItyk~~ 171 (324)
||+++ ||||+|||+|+..
T Consensus 204 Vyd~~---Q~YPeYLI~y~~~ 221 (223)
T cd01438 204 IYRGE---QAYPEYLITYQIV 221 (223)
T ss_pred EECCC---cEeeEEEEEEEee
Confidence 99985 9999999999864
No 3
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=99.97 E-value=3e-32 Score=246.47 Aligned_cols=154 Identities=28% Similarity=0.503 Sum_probs=124.8
Q ss_pred CcccCCCCCC--CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcC--CCCCCCCC
Q 020586 1 MFLMGMSPSS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--GHCGASTT 76 (324)
Q Consensus 1 ~F~~gm~~~~--~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF--~~~~~~~~ 76 (324)
+|.++|++.. +.+|.+|+||+|+.+|++|+.+++ ..|+++|||||+.+++.+|+++|| +.+.++.+
T Consensus 21 ~f~~~~~~~~~~~~~I~~I~~i~~~~~~~~f~~~~~----------~~n~~~L~HGt~~~~~~~I~~~G~~~~~~~~~~~ 90 (206)
T PF00644_consen 21 YFKKTWKPVHKYKPKIKKIFRIQNPSLWERFEEKKK----------EGNERLLFHGTSAENICSILRNGFKIDPRKASRN 90 (206)
T ss_dssp HHHHTSTSTTTEEEEEEEEEEEEEHHHHHHHHHHHH----------SSSEEEEEEEETGGGHHHHHHHSS---TTTSCGG
T ss_pred HHHhHCCCCCCCCCEEEEEEEEcChhHHHHHHHHHh----------cCCceEEeCCCChhhccchhcCCCccCccccccC
Confidence 3677888755 499999999999999999999976 358999999999999999999999 66667777
Q ss_pred CCcccceeEeCcCCCCcccCCcccc-CCCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc--------------
Q 020586 77 KSTYGIGVHLAAASCPDTSASYTDV-DENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD-------------- 141 (324)
Q Consensus 77 g~~yG~GIYFAp~~~s~~S~~Y~~~-d~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd-------------- 141 (324)
|.+||.|||||+ +++ +|+.||.. +.+|.++||||+|++|++..+..... ...++.+|||+.+
T Consensus 91 g~~fG~GiYfs~-~~s-~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~g~~sv~~~~~~~~~~~~~~~g 167 (206)
T PF00644_consen 91 GGMFGKGIYFSD-NSS-KSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPPGYDSVKGVGSKTPEDTIDEDG 167 (206)
T ss_dssp CSTTSSSEEEBS-SHH-HHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCTTESEEEECESEEEGGEEEETT
T ss_pred CceeeeEEEeCc-chh-hhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccCCcceecCCCccCCccccccCC
Confidence 899999999994 554 69999987 78999999999999999765543322 2233445666432
Q ss_pred -------------CCCCCcEEEEEeCCCCccccceeEEEEEe
Q 020586 142 -------------DLQNPRHYIVWNMNMNTHIFPEFVVSFKF 170 (324)
Q Consensus 142 -------------~~~np~~yVV~~~~mNtqiyPeYvItyk~ 170 (324)
...++++||||++ .|+||+|||+|+.
T Consensus 168 ~p~~~~~~~~~~~~~~~~~eyVVy~~---~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 168 VPSGKGYVSEYDGSSLNPNEYVVYDN---SQVYPEYLITYKF 206 (206)
T ss_dssp ETTSSEEESCEESSSSSCSEEEESSG---GGEEEEEEEEEEE
T ss_pred CCCCCCccCccCCCccCCCEEEEEcc---cceeeEEEEEEEC
Confidence 2256799999998 5999999999984
No 4
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=99.97 E-value=6.1e-31 Score=201.57 Aligned_cols=69 Identities=55% Similarity=1.035 Sum_probs=67.4
Q ss_pred CCCCCCCccHHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 020586 235 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCK 303 (324)
Q Consensus 235 ~~p~sp~~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k 303 (324)
|+|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||++||+++|.|
T Consensus 2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k 70 (70)
T PF12174_consen 2 RRPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK 70 (70)
T ss_pred CCCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 569999999999999999999999999999999999999999999999999999999999999999975
No 5
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.92 E-value=1.7e-25 Score=218.17 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=119.7
Q ss_pred cccCCCC--CCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCC--CCCCC
Q 020586 2 FLMGMSP--SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCG--ASTTK 77 (324)
Q Consensus 2 F~~gm~~--~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~--~~~~g 77 (324)
|..++++ .-+.+|..|+||++...++||+.++ ...|+++|||||+..++.+|+++||+... ++.+|
T Consensus 157 ~~~t~~~~~~~~~~V~~If~i~r~~e~~~F~~~~----------~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g 226 (347)
T cd01437 157 LKNTHAPTTEYTVEVQEIFRVEREGETDRFKPFK----------KLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTG 226 (347)
T ss_pred HHhcCCCCCCcceeEEEEEEecCCCchhhhHHhh----------ccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCC
Confidence 3445544 2348999999999999999998743 23599999999999999999999999865 45678
Q ss_pred CcccceeEeCcCCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccC--------------
Q 020586 78 STYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD-------------- 142 (324)
Q Consensus 78 ~~yG~GIYFAp~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~-------------- 142 (324)
.|||+||||| ++++ +|++||..+. ++.++||||+|++|++............++.+|||+.+-
T Consensus 227 ~mfGkGIYFA-d~~s-kS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~ 304 (347)
T cd01437 227 YMFGKGIYFA-DMFS-KSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDL 304 (347)
T ss_pred ccccceEeec-CchH-hhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheecc
Confidence 8999999999 4555 6999998776 789999999999999986643322222245688887541
Q ss_pred -------------------CCCCcEEEEEeCCCCccccceeEEEEE
Q 020586 143 -------------------LQNPRHYIVWNMNMNTHIFPEFVVSFK 169 (324)
Q Consensus 143 -------------------~~np~~yVV~~~~mNtqiyPeYvItyk 169 (324)
.-..+|||||+.+ |+.+.|||.+|
T Consensus 305 ~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~~---Qir~rYLv~vk 347 (347)
T cd01437 305 DGVVVPLGKPVPSGHKTDTSLLYNEYIVYDVA---QVRLKYLLEVK 347 (347)
T ss_pred CCeEeeCCccccCCcCCCcccccCCeEeechh---HEEEEEEEEeC
Confidence 0123689999995 99999999875
No 6
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.82 E-value=4.6e-20 Score=191.16 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=110.7
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586 12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA 89 (324)
Q Consensus 12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~ 89 (324)
++|+.|+||++.....||..+++ ..|.++||||++..++.+|+++||.. +.++.+|.|||+|||||
T Consensus 460 l~V~~If~V~R~~E~~rF~~~~~----------~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFA-- 527 (643)
T PLN03124 460 LEIVQIFKVSREGEDERFQKFSS----------TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFA-- 527 (643)
T ss_pred eeEEEEEEeccccchhhHHHhhc----------cCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEec--
Confidence 78999999999998999987642 25899999999999999999999985 34566799999999999
Q ss_pred CCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc---------------------------
Q 020586 90 SCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD--------------------------- 141 (324)
Q Consensus 90 ~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd--------------------------- 141 (324)
+.+.+|++||.... ++.++||||+|++|++.......-.....+.+|||+.+
T Consensus 528 d~~skSa~Yc~~~~~~~~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~ 607 (643)
T PLN03124 528 DMFSKSANYCYASAANPDGVLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVE 607 (643)
T ss_pred chhhhhhhhhhccCCCCeeEEEEEEEecCCcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCcccc
Confidence 34558999997654 45789999999999986442211000011235555431
Q ss_pred -----CCCCCcEEEEEeCCCCccccceeEEEEEecC
Q 020586 142 -----DLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 172 (324)
Q Consensus 142 -----~~~np~~yVV~~~~mNtqiyPeYvItyk~~~ 172 (324)
..-..+|||||+.. |+...|||..+...
T Consensus 608 ~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~~ 640 (643)
T PLN03124 608 SPYSKGSLEYNEYIVYNVD---QIRMRYVLQVKFNY 640 (643)
T ss_pred CCCCCCccccCceEEechh---HeEEEEEEEEEEee
Confidence 00114799999995 99999999988753
No 7
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.78 E-value=4.5e-19 Score=191.29 Aligned_cols=145 Identities=20% Similarity=0.290 Sum_probs=112.4
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586 12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA 89 (324)
Q Consensus 12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~ 89 (324)
++|+.|++|.......||..|++. ..|.++|||||+..++.+|+.+||.. +.++.+|.|||+|||||
T Consensus 799 l~v~~IF~v~r~gE~~rf~~~~~~---------~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFA-- 867 (981)
T PLN03123 799 LELEEVFSLEREGEFDKYAPYKEK---------LKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFA-- 867 (981)
T ss_pred ceeeEEEEecccccccchhhHhhc---------CCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEec--
Confidence 679999999999999999877532 24899999999999999999999984 45677899999999999
Q ss_pred CCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc---------------------------
Q 020586 90 SCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD--------------------------- 141 (324)
Q Consensus 90 ~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd--------------------------- 141 (324)
+++.+|++||.+.. ++...||||+|++|++........ ...++.+|||+.+
T Consensus 868 D~~SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~ 946 (981)
T PLN03123 868 DLVSKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVP 946 (981)
T ss_pred chhhhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCcc
Confidence 45668999997654 678899999999999865432111 1112345555421
Q ss_pred -----CCCCCcEEEEEeCCCCccccceeEEEEEec
Q 020586 142 -----DLQNPRHYIVWNMNMNTHIFPEFVVSFKFS 171 (324)
Q Consensus 142 -----~~~np~~yVV~~~~mNtqiyPeYvItyk~~ 171 (324)
..-..+|||||+.. |+-..|||..+..
T Consensus 947 ~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~ 978 (981)
T PLN03123 947 SKVKASELMYNEYIVYNTA---QVKLQFLLKVRFK 978 (981)
T ss_pred CcccCCccccCceEEechh---HEEEEEEEEEEee
Confidence 00124689999995 9999999988764
No 8
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.77 E-value=4.2e-19 Score=152.25 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=86.5
Q ss_pred EeeecCChhhHHHHHhhcCCCCCCCC--CCCcccceeEeCcCCCCcccCCccccCCCC---------------cEEEEEe
Q 020586 50 YAWLATSKGALSTMIMYGLGHCGAST--TKSTYGIGVHLAAASCPDTSASYTDVDENG---------------VRHMVLC 112 (324)
Q Consensus 50 ~lfHGTs~~~i~~I~~~GF~~~~~~~--~g~~yG~GIYFAp~~~s~~S~~Y~~~d~~G---------------~r~mlLc 112 (324)
+|||||+.+++..|+++||+++..+. ++.+||+||||| ++++ +|++||..+.++ .+.||++
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa-~~~s-~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 78 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSA-PNIS-KSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT 78 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeec-CChH-HhhhhhcccCCcccccccccccccccccceeEEE
Confidence 48999999999999999999987654 489999999999 4666 599999877653 3446666
Q ss_pred eeccCCcccc-----CCCCCCCCCCCCCCcccc----cCCCCCcEEEEEeC-CCCcccccee
Q 020586 113 RVIMGNMEPL-----FPGTKQFHPSSEDFDSGV----DDLQNPRHYIVWNM-NMNTHIFPEF 164 (324)
Q Consensus 113 rVllG~~~~v-----~pgs~q~~ps~~~yDSvV----d~~~np~~yVV~~~-~mNtqiyPeY 164 (324)
+|++|..... .|+.....+..+.||+++ |+..+|++||||+. + |+||||
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~~---Qv~~~Y 137 (137)
T cd01341 79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPYS---QVSIRY 137 (137)
T ss_pred EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecchh---hceecC
Confidence 6666655432 344444445567899999 58889999999998 7 999998
No 9
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.71 E-value=9e-18 Score=178.25 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=105.9
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586 12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA 89 (324)
Q Consensus 12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~ 89 (324)
.+|+.|+||.... ..||..++ ...|.++||||++.+++.+|++.||.. +.++.+|.|||+|||||
T Consensus 626 l~v~~IF~veR~g-e~rf~~~~----------~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFA-- 692 (815)
T PLN03122 626 VSVENIFAVESSA-GPSLDEIK----------KLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCS-- 692 (815)
T ss_pred eeEeEEEEeccCc-cccchhhc----------CCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEec--
Confidence 6799999998865 36777553 125999999999999999999999974 56788999999999999
Q ss_pred CCCcccCCccccC-CCCcEEEEEeeeccCCc--cccCCC---------C------CCCCCCCCCC----ccc--------
Q 020586 90 SCPDTSASYTDVD-ENGVRHMVLCRVIMGNM--EPLFPG---------T------KQFHPSSEDF----DSG-------- 139 (324)
Q Consensus 90 ~~s~~S~~Y~~~d-~~G~r~mlLcrVllG~~--~~v~pg---------s------~q~~ps~~~y----DSv-------- 139 (324)
|++.+|++||... .+....||||.|++|++ +...+. . -...|.+..+ |-+
T Consensus 693 D~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~ 772 (815)
T PLN03122 693 DAAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLI 772 (815)
T ss_pred chhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCc
Confidence 5667899999765 35677999999999997 322221 0 0111211111 111
Q ss_pred ---c-cCCCCCcEEEEEeCCCCccccceeEEEEEecC
Q 020586 140 ---V-DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 172 (324)
Q Consensus 140 ---V-d~~~np~~yVV~~~~mNtqiyPeYvItyk~~~ 172 (324)
. +.....++||||+.. ||-..|||..+..-
T Consensus 773 ~~~~~~~~L~yNEYIVYDva---QvrirYL~~vkf~~ 806 (815)
T PLN03122 773 PSEHKDSPLEYNEYAVYDPK---QVSIRFLVGVKYEE 806 (815)
T ss_pred cCCCCCcccccCceEEEchh---HEEEEEEEEEEeec
Confidence 1 111235799999995 99999999988853
No 10
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.1e-07 Score=93.93 Aligned_cols=95 Identities=23% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCceEEeeecCChhhHHHHHhhcCCCC--CCCCCCCcccceeEeCcCCCCcccCCccccC-CCCcEEEEEeeeccCCccc
Q 020586 45 DANVRYAWLATSKGALSTMIMYGLGHC--GASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNMEP 121 (324)
Q Consensus 45 ~~Ner~lfHGTs~~~i~~I~~~GF~~~--~~~~~g~~yG~GIYFAp~~~s~~S~~Y~~~d-~~G~r~mlLcrVllG~~~~ 121 (324)
..|-+.+|||+...++..|+..|+... ..+..+.+||.||||| ++..+|++||... .....+|++|.|++|+.-.
T Consensus 364 ~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa--~~~sks~~y~~~~~~k~~~~ll~~~~alg~~~~ 441 (531)
T KOG1037|consen 364 LINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFA--DAASKSANYCVTMKGKPTGHLLLCDVALGKEQD 441 (531)
T ss_pred cccccchhcccceeeeeccccCCceecCCCCCceeeccccceEee--eecccccccccccccCchhhhhhhhhhccchhh
Confidence 368899999999999999999998654 3445799999999999 4566899999766 5677899999999999864
Q ss_pred cCCCCCCCCCCCCCCccccc
Q 020586 122 LFPGTKQFHPSSEDFDSGVD 141 (324)
Q Consensus 122 v~pgs~q~~ps~~~yDSvVd 141 (324)
...........+.++||+.+
T Consensus 442 ~~~~~~~~~~~~~~~~sv~~ 461 (531)
T KOG1037|consen 442 LVESIPSLTELPAGKDSVKG 461 (531)
T ss_pred hhcCCcccccCCCCCcchhh
Confidence 43211111113346777653
No 11
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=92.38 E-value=0.67 Score=43.62 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=59.1
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh-hH------HHHHHHHHHhhhcCCc
Q 020586 242 MPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-DD------LLRSTITALQCKHGLR 307 (324)
Q Consensus 242 ~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG-D~------lL~~~i~~~~~k~~~~ 307 (324)
+-...|-..|.+.|++++...=..+...|=.+||||+||-+.++.+.| |+ +|++++.+.+.+.|+.
T Consensus 9 idl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~~~~p~~ 81 (252)
T PF12767_consen 9 IDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNALAKSPPP 81 (252)
T ss_pred cCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHhhcCCCc
Confidence 566779999999999999999999999999999999999999999999 54 7899999997777753
No 12
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=91.72 E-value=0.5 Score=42.06 Aligned_cols=119 Identities=14% Similarity=0.262 Sum_probs=74.7
Q ss_pred ecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCCh-hhHHHHHhhcCCCCCCCCCCCcccc---eeEeCcCCCCccc
Q 020586 20 CSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSK-GALSTMIMYGLGHCGASTTKSTYGI---GVHLAAASCPDTS 95 (324)
Q Consensus 20 V~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~-~~i~~I~~~GF~~~~~~~~g~~yG~---GIYFAp~~~s~~S 95 (324)
|.|..|...|..++..+.........--+.+.|.-... ..+..|+..|+..... .....|+ |+|++. .+...
T Consensus 1 i~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~~--k~~~Lg~ps~gv~~~~--~~D~~ 76 (165)
T PF12509_consen 1 IHNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGNQ--KGTILGKPSMGVYLSR--HSDLL 76 (165)
T ss_pred CCCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhcccccccc--cccccCCCCCCccccc--CCchh
Confidence 56788889999998887642222222235555655544 6778889999987522 3556675 899983 22212
Q ss_pred CCccccCCCCcEEEEEeeeccCCccccCCCC---CCCCCCCCCCcccccC
Q 020586 96 ASYTDVDENGVRHMVLCRVIMGNMEPLFPGT---KQFHPSSEDFDSGVDD 142 (324)
Q Consensus 96 ~~Y~~~d~~G~r~mlLcrVllG~~~~v~pgs---~q~~ps~~~yDSvVd~ 142 (324)
.............+++.+|+-|++..+.... +..-++...||+.+..
T Consensus 77 ~~~~~~~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~~ 126 (165)
T PF12509_consen 77 ESQPFICSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVSK 126 (165)
T ss_pred hcchhhhcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhhh
Confidence 2221111112346899999999999877655 3445666789998753
No 13
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=89.89 E-value=0.65 Score=42.24 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=44.3
Q ss_pred ccHHH---HHHHHhccCChh-HHHHHHHHHHHHHhCCCChHHHHHHHHHHhh------hHHHHHHHHH
Q 020586 242 MPFPM---LFASISNKVSPK-VMEQISNQYELFRAKKVNRDDFVKKLRLIVG------DDLLRSTITA 299 (324)
Q Consensus 242 ~~F~~---L~~~l~~~l~~~-~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG------D~lL~~~i~~ 299 (324)
+.|.. ++++.++.-++. ++....+.|+.=+.|.|+|+||.+.|+..+| |.++..++-.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~ 151 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDK 151 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 55554 555555555566 8999999999999999999999999999999 4444444443
No 14
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=74.87 E-value=7.5 Score=26.91 Aligned_cols=33 Identities=6% Similarity=0.312 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhh
Q 020586 258 KVMEQISNQYELFRAKKVNRDDFVKKLRLIVGD 290 (324)
Q Consensus 258 ~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD 290 (324)
+.-+...+....|++++|++.++++.+..+.+|
T Consensus 2 ~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~ 34 (47)
T PF02671_consen 2 EVYNEFLKILNDYKKGRISRSEVIEEVSELLRG 34 (47)
T ss_dssp HHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 445566778889999999999999999999974
No 15
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=73.80 E-value=3.7 Score=28.67 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=37.0
Q ss_pred ccHHHHHHHHhc---c-CChhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 020586 242 MPFPMLFASISN---K-VSPKVMEQISNQYELFRAKKVNRDDFVKKLRL 286 (324)
Q Consensus 242 ~~F~~L~~~l~~---~-l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~ 286 (324)
|++..|..+|++ . +++.+.+.|...++.=+.|+|+-+||+..|+.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 455566666654 4 88999999999999999999999999998864
No 16
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=62.63 E-value=21 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=41.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 243 PFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 243 ~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
.+--++--+++.+++++.+.+...-++|++|+|+....+..+|..+-
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ 100 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLAR 100 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 44456777899999999999999999999999999999999988773
No 17
>PHA01748 hypothetical protein
Probab=60.53 E-value=24 Score=26.14 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.5
Q ss_pred HhccCChhHHHHHHHHHHHHHhCCCChHHHHHHH-HHHhhhHHHHHHHHHHhhhc
Q 020586 251 ISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKL-RLIVGDDLLRSTITALQCKH 304 (324)
Q Consensus 251 l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~-R~IvGD~lL~~~i~~~~~k~ 304 (324)
++=.||++-++.|..+.++. .++|.++|+.. |..+.+.+...++..++...
T Consensus 5 iSvrLp~el~~eld~~a~~~---g~~RSE~Ir~Ai~~~~~~~~~~~~~~~~~~~~ 56 (60)
T PHA01748 5 ITFKIEEDLLELLDRYAIKH---GLNRSEAIRKAIEKMVKDELKKETVPVAKVEK 56 (60)
T ss_pred EEEECCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhcccchhhhhh
Confidence 34457887777777776654 47999999875 99999999999999998753
No 18
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=59.04 E-value=2.5 Score=47.96 Aligned_cols=102 Identities=4% Similarity=-0.138 Sum_probs=66.2
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCCC
Q 020586 12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASC 91 (324)
Q Consensus 12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~~ 91 (324)
..+.++.++.+...|+++....+........ --+++.+||+.. ++..+.-.+|+.+-. ..++++|.++||+ +.+
T Consensus 998 ~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~--~~~~~~~f~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~f~-~~~ 1071 (1143)
T KOG4177|consen 998 NVSARFWLVDCRKTREAVTHATQLYNELIFV--YMAKFVVFAKSN--FPNEGRLRCFCMTDD-KVDKTLEQQEYFA-EVA 1071 (1143)
T ss_pred hhhhHhhhhhcchhhhhhhHHHHHHHHHHHH--HHHHHhhhccCC--cchhhccccccccCC-ccCcchhhHHHHH-Hhh
Confidence 4445667777777777775554433221111 236888999987 445666678988754 3588999999999 554
Q ss_pred CcccCCcc--------ccCC------CCcEEEEEeeeccCCcc
Q 020586 92 PDTSASYT--------DVDE------NGVRHMVLCRVIMGNME 120 (324)
Q Consensus 92 s~~S~~Y~--------~~d~------~G~r~mlLcrVllG~~~ 120 (324)
+ +++.|- .... ..-+++.+|+|-+++.-
T Consensus 1072 ~-~~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~~ 1113 (1143)
T KOG4177|consen 1072 R-SRDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLENR 1113 (1143)
T ss_pred h-hhhhhhhccccceecccCccccceeccceeEEeeehhhhhh
Confidence 4 465542 1111 12478999999999865
No 19
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=58.18 E-value=12 Score=32.22 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=35.9
Q ss_pred eeecCChhhHHHHHhhcCCCCCCCCC---CCcccceeEeCcCCCCcccCCccccCCC
Q 020586 51 AWLATSKGALSTMIMYGLGHCGASTT---KSTYGIGVHLAAASCPDTSASYTDVDEN 104 (324)
Q Consensus 51 lfHGTs~~~i~~I~~~GF~~~~~~~~---g~~yG~GIYFAp~~~s~~S~~Y~~~d~~ 104 (324)
.||||....+++|.. |...+..+.+ ...| +|.|.| .+ ++.++.|+.-+++
T Consensus 2 ~YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W-~GfY~a-~~-~~~A~GYa~d~E~ 54 (147)
T cd01436 2 SYHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDW-KGFYST-DN-KYDAAGYSVDNEN 54 (147)
T ss_pred CccccchHHHHHHHh-hccCCCCCCCcchhhhh-cceeec-CC-HhhhcceeeccCC
Confidence 489999999999997 8776654322 2233 599999 34 6789999865554
No 20
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=57.99 E-value=8 Score=34.97 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.2
Q ss_pred eEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCc
Q 020586 48 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 88 (324)
Q Consensus 48 er~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp 88 (324)
...|||||...++..|.+.|+.+.... =|+||+
T Consensus 94 P~~lyHGT~~~~~~~I~~~GL~pm~R~--------hVHLs~ 126 (179)
T PRK00819 94 PAVLYHGTSSEELDSILEEGLKPMKRH--------YVHLST 126 (179)
T ss_pred CceeEeCCCHHHHHHHHHhCCCccCCC--------eEEecC
Confidence 458999999999999999998875432 488984
No 21
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=57.92 E-value=25 Score=22.55 Aligned_cols=29 Identities=10% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 261 EQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 261 ~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
+.|.+.-+.+.+|-||.+||-++-+.|.+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 45667777788999999999999887753
No 22
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=54.28 E-value=10 Score=34.34 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=22.1
Q ss_pred eEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCc
Q 020586 48 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 88 (324)
Q Consensus 48 er~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp 88 (324)
...++|||..+++..|+..|+.+.. ..=|+||+
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~m~--------R~hVHls~ 137 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKPMG--------RNHVHLST 137 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B---S--------SSSEEEES
T ss_pred CCEEEEccchhhHHHHHHhCCCCCC--------CCEEEEee
Confidence 4689999999999999999987643 33599995
No 23
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=50.60 E-value=12 Score=30.66 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=30.5
Q ss_pred eeecCChhhHHHHHhhcCCC-CCCCCCCCcccceeEeCcCCCCcc
Q 020586 51 AWLATSKGALSTMIMYGLGH-CGASTTKSTYGIGVHLAAASCPDT 94 (324)
Q Consensus 51 lfHGTs~~~i~~I~~~GF~~-~~~~~~g~~yG~GIYFAp~~~s~~ 94 (324)
+||=|+......|++.|=-. ...+... .||.|.||+ +-++.+
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~-~~~~g~y~t-~~apg~ 43 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD-RFGQGQYFT-DIAPGK 43 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc-cCCCceEEE-ecCCCC
Confidence 58889999999999887543 2223334 999999999 455544
No 24
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=48.99 E-value=70 Score=24.39 Aligned_cols=44 Identities=11% Similarity=0.299 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHhh--------hHHHHHHHHHHh
Q 020586 258 KVMEQISNQYELFRA-----KKVNRDDFVKKLRLIVG--------DDLLRSTITALQ 301 (324)
Q Consensus 258 ~~~~~i~~~y~~~k~-----~kI~r~~~v~~~R~IvG--------D~lL~~~i~~~~ 301 (324)
.+++.+.+.|..|-+ |.|+.++|.+.++...| ++-+..+++.+.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d 61 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLD 61 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc
Confidence 355566666666655 89999999999987545 455666666553
No 25
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=48.69 E-value=14 Score=34.29 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCceEEeeecCChhhHHHHHhhcCCCC
Q 020586 45 DANVRYAWLATSKGALSTMIMYGLGHC 71 (324)
Q Consensus 45 ~~Ner~lfHGTs~~~i~~I~~~GF~~~ 71 (324)
+.....|||||+.+++..|+++|....
T Consensus 117 ~~~p~~LyhGTs~~~l~~I~~~Gi~Pm 143 (211)
T COG1859 117 AEPPAVLYHGTSPEFLPSILEEGLKPM 143 (211)
T ss_pred CCCCcEEEecCChhhhHHHHHhcCccc
Confidence 345668999999999999999998764
No 26
>PTZ00184 calmodulin; Provisional
Probab=48.48 E-value=29 Score=28.19 Aligned_cols=60 Identities=8% Similarity=0.189 Sum_probs=41.7
Q ss_pred CccHHHHHHHHhccCC----hhHHHHHHHHHHHHHhCCCChHHHHHHHHHH---hhhHHHHHHHHHH
Q 020586 241 WMPFPMLFASISNKVS----PKVMEQISNQYELFRAKKVNRDDFVKKLRLI---VGDDLLRSTITAL 300 (324)
Q Consensus 241 ~~~F~~L~~~l~~~l~----~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~I---vGD~lL~~~i~~~ 300 (324)
.+.|..+..++...+. ..++..+.+.|+.=+.+.|+++||.+.++.+ +-+..+..++..+
T Consensus 63 ~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 63 TIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (149)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhc
Confidence 3788888887776543 3456666666666688999999999999886 1255666665544
No 27
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=48.10 E-value=11 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 020586 259 VMEQISNQYELFRAKKVNRDDFVKKLRL 286 (324)
Q Consensus 259 ~~~~i~~~y~~~k~~kI~r~~~v~~~R~ 286 (324)
++..+.+.|+.=+.++|+.+||.+.|++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3566778888888999999999999985
No 28
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.91 E-value=73 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHH
Q 020586 260 MEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297 (324)
Q Consensus 260 ~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i 297 (324)
-+.|...-+-|++++|+=+.|+|.+|...-++-+.-+.
T Consensus 25 eDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 25 EDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666788999999999999999999988776654
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=47.52 E-value=56 Score=25.56 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH-----hCCCChHHHHHHHHHHhhh
Q 020586 259 VMEQISNQYELFR-----AKKVNRDDFVKKLRLIVGD 290 (324)
Q Consensus 259 ~~~~i~~~y~~~k-----~~kI~r~~~v~~~R~IvGD 290 (324)
.+..|...|..|- .|+|+++||.+.|+...|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~ 42 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE 42 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH
Confidence 3566777777772 3789999999999986554
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=46.88 E-value=50 Score=25.87 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=21.5
Q ss_pred ccHHHHHHHHhcc-CChhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 020586 242 MPFPMLFASISNK-VSPKVMEQISNQYELFRAKKVNRDDFVKKLR 285 (324)
Q Consensus 242 ~~F~~L~~~l~~~-l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R 285 (324)
+++..|-.++++. ++.+++..|.+.++.=..+.|+.+||+..++
T Consensus 27 Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 27 VTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred EeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 4555554444332 3444444444444444456666666665444
No 31
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=45.34 E-value=36 Score=26.71 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=32.4
Q ss_pred CChhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHhh--hHHHHHHHHHH
Q 020586 255 VSPKVMEQISNQYELF---RAKKVNRDDFVKKLRLIVG--DDLLRSTITAL 300 (324)
Q Consensus 255 l~~~~~~~i~~~y~~~---k~~kI~r~~~v~~~R~IvG--D~lL~~~i~~~ 300 (324)
+++++...+...|+.| +.|.|+.++|.+.||.. | +..+..+++.+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~ev~~i~~~~ 53 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-GLPQTLLAKIWNLA 53 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-CCCHHHHHHHHHHh
Confidence 4566777777777777 56899999999999884 5 45555555544
No 32
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=45.28 E-value=33 Score=25.14 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHHHHhCCCChHHHHHHHHH----HhhhHHHHHHHHHHhhhcCC
Q 020586 255 VSPKVMEQISNQYELFRAKKVNRDDFVKKLRL----IVGDDLLRSTITALQCKHGL 306 (324)
Q Consensus 255 l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~----IvGD~lL~~~i~~~~~k~~~ 306 (324)
|.+.++++| .++-+-+..-++|++++..+-. .+.++.|..+|.+||.++..
T Consensus 6 Lt~~e~~lL-~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 6 LTPKEFRLL-ELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred cCHHHHHHH-HHHHhCCCCccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 566666644 4555555567999999998764 34578999999999999865
No 33
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=44.78 E-value=26 Score=26.75 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHHHhCCCChHHHHHHHHH---HhhhHHHHHHHHHHhhhcCC
Q 020586 255 VSPKVMEQISNQYELFRAKKVNRDDFVKKLRL---IVGDDLLRSTITALQCKHGL 306 (324)
Q Consensus 255 l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~---IvGD~lL~~~i~~~~~k~~~ 306 (324)
|.+.++.+|.-.+ .-...-+||++++..+=. .+.++.|...|.+||.|+..
T Consensus 24 Lt~~e~~lL~~L~-~~~~~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 24 LTPKEFELLELLA-RNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred eCHHHHHHHHHHH-hCCCCcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 4555555555444 335678999999999943 25789999999999999875
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=44.45 E-value=77 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH-----hCCCChHHHHHHHHHHhhhH
Q 020586 259 VMEQISNQYELFR-----AKKVNRDDFVKKLRLIVGDD 291 (324)
Q Consensus 259 ~~~~i~~~y~~~k-----~~kI~r~~~v~~~R~IvGD~ 291 (324)
.++.|...|.++- +++|+++||.+.|+...|+.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~ 43 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF 43 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh
Confidence 4566777777776 45899999999998777753
No 35
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=40.56 E-value=13 Score=23.50 Aligned_cols=27 Identities=7% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHH
Q 020586 260 MEQISNQYELFRAKKVNRDDFVKKLRL 286 (324)
Q Consensus 260 ~~~i~~~y~~~k~~kI~r~~~v~~~R~ 286 (324)
+..+.+.|+.=+.|+|+.+||+..|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345556666667799999999998875
No 36
>PTZ00315 2'-phosphotransferase; Provisional
Probab=40.32 E-value=50 Score=35.22 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=25.7
Q ss_pred EEeeecCChhhHHHHHhhc-CCCCCCCCCCCcccceeEeCc
Q 020586 49 RYAWLATSKGALSTMIMYG-LGHCGASTTKSTYGIGVHLAA 88 (324)
Q Consensus 49 r~lfHGTs~~~i~~I~~~G-F~~~~~~~~g~~yG~GIYFAp 88 (324)
..+||||...++.+|++.| +....-. =||||+
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~M~R~--------HVHLs~ 509 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLSTMTRQ--------HIHFAK 509 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccccCCC--------eEEecC
Confidence 4799999999999999999 7665321 388884
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=37.78 E-value=60 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=26.7
Q ss_pred HHHHHHHHHH----HhC-CCChHHHHHHHHHHhhh--------HHHHHHHHHH
Q 020586 261 EQISNQYELF----RAK-KVNRDDFVKKLRLIVGD--------DLLRSTITAL 300 (324)
Q Consensus 261 ~~i~~~y~~~----k~~-kI~r~~~v~~~R~IvGD--------~lL~~~i~~~ 300 (324)
+.|.+.|..| ..| +|+++||.+.||...|+ .-+..+++.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~ 61 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL 61 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3455555555 456 59999999999986665 3355555554
No 38
>PTZ00183 centrin; Provisional
Probab=35.84 E-value=75 Score=26.19 Aligned_cols=77 Identities=6% Similarity=0.130 Sum_probs=48.0
Q ss_pred ccHHHHHHHHhc----cCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHH---hhhHHHHHHHHHHhhhcCCccCcchhh
Q 020586 242 MPFPMLFASISN----KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLI---VGDDLLRSTITALQCKHGLRCSVAWTS 314 (324)
Q Consensus 242 ~~F~~L~~~l~~----~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~I---vGD~lL~~~i~~~~~k~~~~~~~~~~s 314 (324)
+.|..++.++.. ..+..++..+.+.|+.=..+.|+++||...++.. .-+.-+..++..+-. .-.....|..
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~--~~~g~i~~~e 147 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADR--NGDGEISEEE 147 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--CCCCcCcHHH
Confidence 566666555543 3345567777777777778899999999999865 225555556555431 1233455666
Q ss_pred hHHHHh
Q 020586 315 LQTTVQ 320 (324)
Q Consensus 315 ~~~~~~ 320 (324)
+...+.
T Consensus 148 f~~~~~ 153 (158)
T PTZ00183 148 FYRIMK 153 (158)
T ss_pred HHHHHh
Confidence 665554
No 39
>PRK09108 type III secretion system protein HrcU; Validated
Probab=34.52 E-value=90 Score=31.14 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=50.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 247 LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 247 L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
++.++-=.+.-.-.|.+...|+-.|+-|+||+|.=+-.++-=||-.+++-++++|.+..
T Consensus 189 ~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~a 247 (353)
T PRK09108 189 LAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARELA 247 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444445566788999999999999999999999999999999999999999997654
No 40
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=1.2e+02 Score=27.29 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=27.0
Q ss_pred HHHHHHh-----ccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 246 MLFASIS-----NKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 246 ~L~~~l~-----~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
.|+++|+ |.-+|+..+. +.++|++ ++||.|++|.+|-
T Consensus 120 IllSiIsmL~~PN~~SPANVDA----a~~~Ren---~~EykkkV~r~vr 161 (171)
T KOG0425|consen 120 ILLSIISMLNSPNDESPANVDA----AKEWREN---PEEYKKKVRRCVR 161 (171)
T ss_pred hHHHHHHHHcCCCCCCccchHH----HHHHhhC---HHHHHHHHHHHHH
Confidence 4666666 3344555554 7888888 9999999999984
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=32.59 E-value=43 Score=22.11 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=20.9
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHH---HhCCCChHHHHHHH
Q 020586 242 MPFPMLFASISNKVSPKVMEQISNQYELF---RAKKVNRDDFVKKL 284 (324)
Q Consensus 242 ~~F~~L~~~l~~~l~~~~~~~i~~~y~~~---k~~kI~r~~~v~~~ 284 (324)
+++..+..++...-.+..-..+...++.+ +.+.|+-+||+..+
T Consensus 17 l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 17 ISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34444444444442222333333334333 55677777776654
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=32.19 E-value=99 Score=21.63 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=28.1
Q ss_pred ccHHHHHHHHhc-cCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHh
Q 020586 242 MPFPMLFASISN-KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIV 288 (324)
Q Consensus 242 ~~F~~L~~~l~~-~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~Iv 288 (324)
++...|..++.. .++...+..+.+.++.=..++|+-+||+..+..|.
T Consensus 16 i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 16 ISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 333444444433 24555555565555555668888888888777654
No 43
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=31.89 E-value=55 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=26.1
Q ss_pred HHHHhCCCChHHHHHHHHHHhhhHHHHHHHH
Q 020586 268 ELFRAKKVNRDDFVKKLRLIVGDDLLRSTIT 298 (324)
Q Consensus 268 ~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~ 298 (324)
...+.++||++||.+.|+.-.|.++|...|.
T Consensus 29 ~~~~~g~it~~e~~~~~~~~~g~~~l~~li~ 59 (283)
T PRK02998 29 VTSKVGNITEKELSKELRQKYGESTLYQMVL 59 (283)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999888888543
No 44
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=31.30 E-value=1.1e+02 Score=30.45 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=50.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 247 LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 247 L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
++..+--.+.-.-.|.+...|+=.|+-|+||+|.=+-.++-=||-.+++-++++|.+..
T Consensus 187 ~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~a 245 (347)
T TIGR00328 187 LILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAA 245 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34444455667788999999999999999999999999999999999999999997754
No 45
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=30.96 E-value=1.1e+02 Score=30.44 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 249 ASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 249 ~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
.++-=.+.-.-.|.+...|+-.|+-|+||+|.=+..++-=||-.+++-++++|.+..
T Consensus 189 ~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~~ 245 (349)
T PRK12721 189 GLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEIQ 245 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 333344456678899999999999999999999999999999999999999998653
No 46
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=30.56 E-value=51 Score=24.15 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCChHHHHHHHHH---HhhhHHHHHHHHHHhhhcCCc
Q 020586 255 VSPKVMEQISNQYELFRAKKVNRDDFVKKLRL---IVGDDLLRSTITALQCKHGLR 307 (324)
Q Consensus 255 l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~---IvGD~lL~~~i~~~~~k~~~~ 307 (324)
|++.+..+|.-... -...-+||++++..+=. -+.|+-|...|.+|+.|+...
T Consensus 6 Lt~~e~~lL~~L~~-~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~~ 60 (77)
T PF00486_consen 6 LTPKEFRLLELLLR-NPGRVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLEDA 60 (77)
T ss_dssp SSHHHHHHHHHHHH-TTTSEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHh-CCCCCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhhc
Confidence 56666666664443 35556899999998865 367999999999999997763
No 47
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=30.39 E-value=26 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHH
Q 020586 263 ISNQYELFRAKKVNRDDFVKKLRL 286 (324)
Q Consensus 263 i~~~y~~~k~~kI~r~~~v~~~R~ 286 (324)
+.+.++.-..+.|+.++|...++.
T Consensus 5 ~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHCCCCCCcEeHHHHHHHHHh
Confidence 344444445678999999888875
No 48
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=30.26 E-value=2.5e+02 Score=21.96 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=42.1
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh-hHHHHHHHHHHh
Q 020586 247 LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-DDLLRSTITALQ 301 (324)
Q Consensus 247 L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG-D~lL~~~i~~~~ 301 (324)
+.-.=+.-++++++..|.+.|+.+-.+..+-+|-+..++...+ +..+...+.-+.
T Consensus 20 ~vGLrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 20 LVGLRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREIVDFIR 75 (83)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3444466799999999999999999999999999999999766 555555555444
No 49
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.83 E-value=1.2e+02 Score=30.34 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 247 LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 247 L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
++..+-=.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||-.+++-++++|.+..
T Consensus 194 ~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a 252 (359)
T PRK05702 194 LLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREMA 252 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444445566788999999999999999999999999999999999999999997754
No 50
>PRK06298 type III secretion system protein; Validated
Probab=29.47 E-value=1.2e+02 Score=30.27 Aligned_cols=60 Identities=5% Similarity=0.045 Sum_probs=50.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 246 MLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 246 ~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
.++..+--.+.-.-.|.+...|+=.|+-|+||+|.=+-.++-=||-.+++-++++|.++.
T Consensus 187 l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~~ 246 (356)
T PRK06298 187 AVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIA 246 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344444445566778899999999999999999999999999999999999999997754
No 51
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=29.35 E-value=1.2e+02 Score=29.98 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 248 FASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 248 ~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
+.++--.+.-.-.|.+...|+=.|+-|+||+|.=+..++-=||-.+++-++++|.+..
T Consensus 187 ~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re~~ 244 (342)
T TIGR01404 187 LVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQEIL 244 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344445566788999999999999999999999999999999999999999997654
No 52
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=27.69 E-value=1.2e+02 Score=32.40 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=48.6
Q ss_pred HhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 251 ISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 251 l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
+--.+.-.-.|.+...|+-.|+-|+||+|.=+..|+-=||-.+++-++++|.+..
T Consensus 454 ~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~ 508 (609)
T PRK12772 454 TLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREMA 508 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344567788999999999999999999999999999999999999999997754
No 53
>PTZ00184 calmodulin; Provisional
Probab=27.53 E-value=1.5e+02 Score=23.93 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=29.6
Q ss_pred ccHHHHHHHH---hccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 020586 242 MPFPMLFASI---SNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLI 287 (324)
Q Consensus 242 ~~F~~L~~~l---~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~I 287 (324)
+++..|..+| ........+..+.+.++.=..+.|+.++|++.+...
T Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 28 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4444444444 334444455555555555567889999999998865
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=26.73 E-value=81 Score=24.59 Aligned_cols=46 Identities=7% Similarity=0.150 Sum_probs=31.6
Q ss_pred ccHHHHHHHHhcc----CC----hhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 020586 242 MPFPMLFASISNK----VS----PKVMEQISNQYELFRAKKVNRDDFVKKLRLI 287 (324)
Q Consensus 242 ~~F~~L~~~l~~~----l~----~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~I 287 (324)
++-..|..+|... ++ ..+++.+.+.++.-+.|+|+-++|++.|..+
T Consensus 27 Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 27 LYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4555555555433 33 6667777777766678999999999877654
No 55
>PTZ00183 centrin; Provisional
Probab=26.70 E-value=69 Score=26.42 Aligned_cols=45 Identities=4% Similarity=0.220 Sum_probs=32.7
Q ss_pred ccHHHHHHHH---hccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 020586 242 MPFPMLFASI---SNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRL 286 (324)
Q Consensus 242 ~~F~~L~~~l---~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~ 286 (324)
+....+...+ ...++..++..+...++.=+.+.|+.++|++.|+.
T Consensus 107 i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 107 ISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3344444444 45688888888877777667899999999988875
No 56
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=26.59 E-value=76 Score=30.32 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=25.7
Q ss_pred HHHhCCCChHHHHHHHHHHhhhHHHHHHHH
Q 020586 269 LFRAKKVNRDDFVKKLRLIVGDDLLRSTIT 298 (324)
Q Consensus 269 ~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~ 298 (324)
....++||++||.+.|+...|.++|...|.
T Consensus 29 ~~~~~~IT~~e~~~~~k~~~~~~~L~~~I~ 58 (287)
T PRK03095 29 TSKAGDITKDEFYEQMKTQAGKQVLNNMVM 58 (287)
T ss_pred EecCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999888877664
No 57
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=26.50 E-value=84 Score=31.03 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHh----CCC------ChHHHHHHHHHHhhhHHHHHHHHHHhhhc
Q 020586 246 MLFASISNKVSPKVMEQISNQYELFRA----KKV------NRDDFVKKLRLIVGDDLLRSTITALQCKH 304 (324)
Q Consensus 246 ~L~~~l~~~l~~~~~~~i~~~y~~~k~----~kI------~r~~~v~~~R~IvGD~lL~~~i~~~~~k~ 304 (324)
|.|-.+++.||. .++.|.++|+++.+ ..| .-+.+|+.++.++|+.-..-+|++.+.|+
T Consensus 272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
T PRK12557 272 MHLLEKQKDLDA-ALEILENLDEDLLKEIEEAEIKPTTLVAAQALVKEIKTLIGGRAAEGAIRRSMRKL 339 (342)
T ss_pred CCcchhhhhHHH-HHHHHHHHHHHHhhccccCccccceecChHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 344445555544 68889999999844 333 34678999999999999999999887664
No 58
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=26.32 E-value=1.1e+02 Score=24.06 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=35.1
Q ss_pred ccHHHHHHHHh------ccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHh
Q 020586 242 MPFPMLFASIS------NKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIV 288 (324)
Q Consensus 242 ~~F~~L~~~l~------~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~Iv 288 (324)
++...|..+|+ ..+++++.+.+.+..+.=..|+|+-+||++.|..+.
T Consensus 29 Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 29 LSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 55556666664 446777788887777777889999999998877653
No 59
>KOG4613 consensus Predicted component of DNA replication checkpoint response mechanism (S-M checkpoint) [General function prediction only; Cell cycle control, cell division, chromosome partitioning]
Probab=26.24 E-value=73 Score=27.17 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 262 QISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 262 ~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
.-+..|+.|.++-.+|++|||---.|+- +.+++++.+..
T Consensus 41 tC~~ly~kL~e~hlsRd~~ik~Citi~~-----s~lk~lRe~re 79 (133)
T KOG4613|consen 41 TCQNLYKKLFEGHLSRDQFIKECITIVR-----SQLKQLRETRE 79 (133)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhh
Confidence 5678899999999999999999998885 44566665543
No 60
>PRK10167 hypothetical protein; Provisional
Probab=25.78 E-value=1.7e+02 Score=26.18 Aligned_cols=46 Identities=4% Similarity=0.061 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 244 FPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 244 F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
+--++--+++.+++++.+.+...-++||+|+|+....+-.+|..+-
T Consensus 96 L~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~ 141 (169)
T PRK10167 96 LMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMA 141 (169)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3345667899999999999999999999999999999999888874
No 61
>PRK08156 type III secretion system protein SpaS; Validated
Probab=25.59 E-value=1.6e+02 Score=29.59 Aligned_cols=60 Identities=7% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 246 MLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 246 ~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
.++..+--.+.-.-.|.....|+-.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 181 l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~re~a 240 (361)
T PRK08156 181 LVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344444555667788999999999999999999999999999999999999999997754
No 62
>PF09009 Exotox-A_cataly: Exotoxin A catalytic; InterPro: IPR015099 Prokaryotic exotoxin A catalyses the transfer of ADP ribose from nicotinamide adenine dinucleotide (NAD) to elongation factor-2 in eukaryotic cells, with subsequent inhibition of protein synthesis []. ; PDB: 2ZIT_B 3B82_F 1ZM3_D 1ZM9_F 1XK9_A 1ZM2_B 1ZM4_D 3B8H_F 1IKP_A 1AER_A ....
Probab=25.57 E-value=93 Score=28.50 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred EEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHh-hcCCCCC-CCCCCCcccceeEeCcCCCCccc
Q 020586 18 QRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIM-YGLGHCG-ASTTKSTYGIGVHLAAASCPDTS 95 (324)
Q Consensus 18 ~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~-~GF~~~~-~~~~g~~yG~GIYFAp~~~s~~S 95 (324)
+-++|...+.--+.++ +++ ..| -+...||||......+|.. .|=-.+. ..-+...|| |.|.|. +.+ .+
T Consensus 25 qG~~NWT~q~L~~tHq-~L~----~~G--YVFVGYHGT~~~AAQsIVnr~~~VpR~~~~e~e~~W~-G~Yva~-d~~-vA 94 (236)
T PF09009_consen 25 QGVTNWTYQELEATHQ-ALT----EEG--YVFVGYHGTNHVAAQSIVNRIGPVPRGRSTELEAIWG-GLYVAT-DAA-VA 94 (236)
T ss_dssp TEEET--HHHHHHHHH-HHH----CTT--EEEEEEEEEEHHHHHHHHH-TT----TTSSCCCCTT--SEEEBS-SHH-HH
T ss_pred cccccccHHHHHHHHH-HHH----hCc--eEEEeeccchHHHHHHHHhhcccccccCccchHHHhC-ceEecC-CHH-Hh
Confidence 4478876544444443 332 233 6888999999998888883 2211122 222345665 899994 544 36
Q ss_pred CCccc
Q 020586 96 ASYTD 100 (324)
Q Consensus 96 ~~Y~~ 100 (324)
..|+.
T Consensus 95 yGYAr 99 (236)
T PF09009_consen 95 YGYAR 99 (236)
T ss_dssp HTTSC
T ss_pred hhhhh
Confidence 77764
No 63
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=25.11 E-value=77 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCChHHHHHHHHH--Hh-hhHHHHHHHHHHhhhcC
Q 020586 255 VSPKVMEQISNQYELFRAKKVNRDDFVKKLRL--IV-GDDLLRSTITALQCKHG 305 (324)
Q Consensus 255 l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~--Iv-GD~lL~~~i~~~~~k~~ 305 (324)
|.+.+.++|..... -.-+-+||+++.+.+.. .. +|+.|...|++||.|+.
T Consensus 162 Lt~~E~~lL~~l~~-~~~~v~sr~~l~~~vw~~~~~~~~~~i~~~i~rlR~kl~ 214 (240)
T PRK10701 162 LSTADFDLLWELAT-HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLL 214 (240)
T ss_pred cCHHHHHHHHHHHh-CCCccCcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHhcc
Confidence 56667776654433 33344599999999975 33 48999999999999985
No 64
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=25.06 E-value=63 Score=28.14 Aligned_cols=52 Identities=23% Similarity=0.297 Sum_probs=41.4
Q ss_pred cCChhHHHHHHHHHHHHHhCCCChHHHHHHH--HHHhhhHHHHHHHHHHhhhcCC
Q 020586 254 KVSPKVMEQISNQYELFRAKKVNRDDFVKKL--RLIVGDDLLRSTITALQCKHGL 306 (324)
Q Consensus 254 ~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~--R~IvGD~lL~~~i~~~~~k~~~ 306 (324)
.|++..+++|.-+++ -.-.=|+|+||+..+ ..+|.|.-|...|..||.-+..
T Consensus 31 ~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~Ltq~I~~LRr~L~d 84 (148)
T COG3710 31 KLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNTLTQAISALRRALRD 84 (148)
T ss_pred EecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccChHHHHHHHHHHHHhc
Confidence 577778888888887 445568999999988 6677787899999999975543
No 65
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=25.03 E-value=46 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHhhhHHHHHHHHHHhh
Q 020586 273 KKVNRDDFVKKLRLIVGDDLLRSTITALQC 302 (324)
Q Consensus 273 ~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~ 302 (324)
+.+||++|.++.=.-+|| +|-+-+..||.
T Consensus 41 C~ls~edF~~~~p~~~Gd-IL~~hL~~L~k 69 (71)
T cd08533 41 CALGKERFLELAPDFVGD-ILWEHLEILQK 69 (71)
T ss_pred HcCCHHHHHHHcCCCcch-HHHHHHHHHHh
Confidence 679999999988777899 66677776663
No 66
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=24.56 E-value=72 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=38.7
Q ss_pred cCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHH---hhhHHHHHHHHHHhhhcC
Q 020586 254 KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLI---VGDDLLRSTITALQCKHG 305 (324)
Q Consensus 254 ~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~I---vGD~lL~~~i~~~~~k~~ 305 (324)
.|.+.+.+++..... -...-+||+++.+.+-.. ..++.|...|.+||.|+.
T Consensus 159 ~Lt~~E~~ll~~l~~-~~~~v~sr~~l~~~v~~~~~~~~~~~~~~~i~~LR~Kl~ 212 (221)
T PRK10766 159 KLTKAEYELLVAFVT-NPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKLN 212 (221)
T ss_pred cCCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCC
Confidence 356777776654444 556667999999999753 357899999999999984
No 67
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=24.46 E-value=1.1e+02 Score=24.37 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhc----cCCh-hHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 242 MPFPMLFASISN----KVSP-KVMEQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 242 ~~F~~L~~~l~~----~l~~-~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
++...|-.+|++ ++.. ++++.+.+..+.=..|+|+=+||++.|..++-
T Consensus 26 i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 26 LTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred ECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 444444444444 4444 56666666666667789999999888776653
No 68
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.44 E-value=1.7e+02 Score=29.62 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=48.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 248 FASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 248 ~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
+..+-=.+.-.-.|.+...|+-.|+-|+||+|.=+-.++-=||-.+++-++++|.++.
T Consensus 195 ~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~a 252 (386)
T PRK12468 195 LVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMA 252 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3333344445778888999999999999999999999999999999999999997754
No 69
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.40 E-value=1.7e+02 Score=29.24 Aligned_cols=60 Identities=8% Similarity=0.213 Sum_probs=51.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 246 MLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 246 ~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
.++..+--.+.-.-.|.+...|+=.|+-|+||+|.=+-.++-=||-.+++-++++|.+..
T Consensus 195 l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~re~~ 254 (358)
T PRK13109 195 LVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQDRA 254 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344444555667788999999999999999999999999999999999999999997754
No 70
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=24.27 E-value=82 Score=28.26 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=22.8
Q ss_pred hCCCChHHHHHHHHHHhh-----hHHHHHHHHHHhh
Q 020586 272 AKKVNRDDFVKKLRLIVG-----DDLLRSTITALQC 302 (324)
Q Consensus 272 ~~kI~r~~~v~~~R~IvG-----D~lL~~~i~~~~~ 302 (324)
++|+|+++||+-+|.+.. +..|..+-.++..
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 678999999999998764 5666666655553
No 71
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=23.99 E-value=94 Score=30.87 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHhh
Q 020586 275 VNRDDFVKKLRLIVG 289 (324)
Q Consensus 275 I~r~~~v~~~R~IvG 289 (324)
|++||||+++|.|.-
T Consensus 68 In~dqlVq~lr~Ia~ 82 (361)
T PF06122_consen 68 INSDQLVQMLRNIAS 82 (361)
T ss_pred CCHHHHHHHHHHHHH
Confidence 789999999999975
No 72
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.64 E-value=60 Score=25.47 Aligned_cols=37 Identities=30% Similarity=0.488 Sum_probs=28.4
Q ss_pred HHHHHHhccCChhHHH-----HHHHHHHHHH-hCCCChHHHHH
Q 020586 246 MLFASISNKVSPKVME-----QISNQYELFR-AKKVNRDDFVK 282 (324)
Q Consensus 246 ~L~~~l~~~l~~~~~~-----~i~~~y~~~k-~~kI~r~~~v~ 282 (324)
+||+++++++||.... +=...|+.|. +=||.+++.||
T Consensus 19 vlfA~l~~~v~~~ei~ra~aeLNk~ly~~lv~~~~i~K~DVVR 61 (75)
T PF10015_consen 19 VLFAALRGKVPPEEIVRAAAELNKKLYEKLVNKMKIDKLDVVR 61 (75)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEE
Confidence 7899999999997653 4456788888 77888877664
No 73
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=23.08 E-value=96 Score=24.47 Aligned_cols=47 Identities=9% Similarity=0.316 Sum_probs=33.6
Q ss_pred ccHHHHHHHHhccCC--------hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHh
Q 020586 242 MPFPMLFASISNKVS--------PKVMEQISNQYELFRAKKVNRDDFVKKLRLIV 288 (324)
Q Consensus 242 ~~F~~L~~~l~~~l~--------~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~Iv 288 (324)
++...|-..+.+.+| +..++.|.+.++.=+.|+|+=+||++.|..++
T Consensus 28 Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 28 LSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred ECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 555667777766653 56666666666655779999999999887664
No 74
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.59 E-value=1.8e+02 Score=31.45 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred hccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Q 020586 252 SNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHG 305 (324)
Q Consensus 252 ~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k~~ 305 (324)
--.+.-.-.|.+-..|+-.|+-||||+|.=+..++-=||-.+++-++++|.++.
T Consensus 490 lvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRqlqREma 543 (646)
T PRK12773 490 IILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMM 543 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344456678888899999999999999999999999999999999999998755
No 75
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=21.46 E-value=64 Score=25.11 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHHhhhHHHHHHHHHHhh
Q 020586 273 KKVNRDDFVKKLRLIVGDDLLRSTITALQC 302 (324)
Q Consensus 273 ~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~ 302 (324)
+++||++|+++.=.-.|| +|-+-+..|+.
T Consensus 43 C~lt~edF~~~~~~~~Gd-iL~~hL~~Lr~ 71 (75)
T cd08531 43 CKMTKEDFLRLTSAYNAD-VLLSHLSYLRE 71 (75)
T ss_pred HcCCHHHHHHHcCCCcch-HHHHHHHHHHh
Confidence 689999999885445678 67777777763
No 76
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=21.09 E-value=91 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHHhhhHHHHHHHHHHhh
Q 020586 273 KKVNRDDFVKKLRLIVGDDLLRSTITALQC 302 (324)
Q Consensus 273 ~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~ 302 (324)
+++|+|||+++.=. .|| +|-+.+..+.-
T Consensus 46 C~ms~eeF~~~~p~-~Gd-vLy~~lq~~~~ 73 (78)
T cd08538 46 CSMTQEEFIEAAGI-CGE-YLYFILQNIRT 73 (78)
T ss_pred HcCCHHHHHHHccc-chH-HHHHHHHHHHh
Confidence 68999999998866 788 77777776653
No 77
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.89 E-value=1.7e+02 Score=25.69 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=31.5
Q ss_pred cCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh
Q 020586 254 KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG 289 (324)
Q Consensus 254 ~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG 289 (324)
-+.-++...+++..+++.+++++-||..++|+.|.-
T Consensus 61 ~~nl~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~ 96 (193)
T PF06738_consen 61 GVNLDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDR 96 (193)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 355678899999999999999999999999988863
Done!