BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020587
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
           Protein
          Length = 143

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 94  KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA 153
           +D V++C+ LNN+R  SI  KE  L        L +K+++   +A C+T  M  +++F A
Sbjct: 45  RDGVLLCQLLNNLRAHSINLKEINLRPQMSQF-LCLKNIRTFLTACCETFGMRKSELFEA 103

Query: 154 YN 155
           ++
Sbjct: 104 FD 105


>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
 pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
          Length = 865

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPES 258
           +++PK   + K+ +P+IR+ A  C ++ +  +         ID  I+   +   D+ PE 
Sbjct: 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFI--ISRTQALMLHIDSFIENLFALAGDEEPEV 231

Query: 259 RE-AARTLLLELQ 270
           R+   R L++ L+
Sbjct: 232 RKNVCRALVMLLE 244


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPES 258
           +++PK   + K+ +P+IR+ A  C ++ +  +         ID  I+   +   D+ PE 
Sbjct: 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFI--ISRTQALMLHIDSFIENLFALAGDEEPEV 231

Query: 259 RE-AARTLLLELQ 270
           R+   R L++ L+
Sbjct: 232 RKNVCRALVMLLE 244


>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
 pdb|2Z5J|A Chain A, Free Transportin 1
 pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
 pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
 pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
 pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
          Length = 890

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPES 258
           +++PK   + K+ +P+IR+ A  C ++ +  +         ID  I+   +   D+ PE 
Sbjct: 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFI--ISRTQALMLHIDSFIENLFALAGDEEPEV 231

Query: 259 RE-AARTLLLELQ 270
           R+   R L++ L+
Sbjct: 232 RKNVCRALVMLLE 244


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,141,024
Number of Sequences: 62578
Number of extensions: 292152
Number of successful extensions: 778
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 10
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)