Query 020587
Match_columns 324
No_of_seqs 151 out of 303
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2933 Uncharacterized conser 100.0 2.5E-58 5.3E-63 431.2 22.5 321 2-324 1-334 (334)
2 PF12348 CLASP_N: CLASP N term 100.0 5.8E-32 1.3E-36 245.9 18.9 187 92-278 17-213 (228)
3 KOG1820 Microtubule-associated 99.7 4E-15 8.6E-20 157.4 21.4 194 85-278 256-450 (815)
4 KOG1242 Protein containing ada 99.0 9.8E-09 2.1E-13 104.7 15.8 191 84-278 256-451 (569)
5 KOG1242 Protein containing ada 98.4 1.4E-05 3.1E-10 81.9 16.5 191 80-273 132-326 (569)
6 KOG2171 Karyopherin (importin) 98.1 0.00019 4.2E-09 78.0 19.6 188 89-278 355-556 (1075)
7 PF05004 IFRD: Interferon-rela 98.0 0.0011 2.4E-08 64.1 20.5 196 79-275 40-261 (309)
8 KOG2171 Karyopherin (importin) 98.0 0.00098 2.1E-08 72.8 21.1 195 94-306 218-437 (1075)
9 PRK09687 putative lyase; Provi 97.8 0.0015 3.3E-08 62.1 16.5 166 84-267 25-217 (280)
10 KOG2956 CLIP-associating prote 97.6 0.0092 2E-07 60.2 20.2 192 83-276 287-482 (516)
11 PF01602 Adaptin_N: Adaptin N 97.6 0.0013 2.8E-08 66.5 14.2 176 87-273 119-298 (526)
12 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00078 1.7E-08 54.4 9.8 92 141-269 4-95 (97)
13 cd00020 ARM Armadillo/beta-cat 97.5 0.0013 2.8E-08 52.3 10.6 109 84-192 9-119 (120)
14 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.0026 5.6E-08 51.3 11.7 88 98-185 2-89 (97)
15 PF01602 Adaptin_N: Adaptin N 97.5 0.0047 1E-07 62.4 16.2 171 83-269 8-179 (526)
16 PF12348 CLASP_N: CLASP N term 97.4 0.0024 5.1E-08 57.9 12.3 139 90-233 61-211 (228)
17 PRK09687 putative lyase; Provi 97.4 0.0057 1.2E-07 58.2 15.2 118 92-225 101-218 (280)
18 KOG0212 Uncharacterized conser 97.3 0.0059 1.3E-07 62.8 14.0 152 120-273 81-240 (675)
19 KOG2023 Nuclear transport rece 97.3 0.012 2.5E-07 61.8 16.1 185 84-269 217-503 (885)
20 PTZ00429 beta-adaptin; Provisi 97.2 0.01 2.3E-07 63.7 16.3 176 83-272 33-209 (746)
21 PRK13800 putative oxidoreducta 97.2 0.0088 1.9E-07 65.6 15.8 156 86-267 718-895 (897)
22 PF13646 HEAT_2: HEAT repeats; 97.1 0.0058 1.3E-07 46.6 9.7 85 166-266 1-87 (88)
23 PLN03200 cellulose synthase-in 97.1 0.018 3.8E-07 67.5 16.8 191 84-276 532-769 (2102)
24 KOG1248 Uncharacterized conser 96.9 0.081 1.8E-06 58.5 18.9 186 88-276 703-903 (1176)
25 PF12717 Cnd1: non-SMC mitotic 96.8 0.012 2.6E-07 52.0 10.2 89 179-272 3-93 (178)
26 PRK13800 putative oxidoreducta 96.7 0.042 9.1E-07 60.3 16.0 129 83-226 653-802 (897)
27 PF10274 ParcG: Parkin co-regu 96.7 0.06 1.3E-06 48.4 13.5 122 79-200 35-171 (183)
28 cd00020 ARM Armadillo/beta-cat 96.6 0.017 3.7E-07 45.7 9.1 104 124-227 8-119 (120)
29 KOG2956 CLIP-associating prote 96.6 0.056 1.2E-06 54.7 14.6 145 88-238 335-487 (516)
30 PTZ00429 beta-adaptin; Provisi 96.6 0.17 3.6E-06 54.7 19.0 179 84-274 107-329 (746)
31 KOG0211 Protein phosphatase 2A 96.6 0.13 2.9E-06 55.4 17.7 169 95-272 492-665 (759)
32 COG5096 Vesicle coat complex, 96.6 0.079 1.7E-06 56.8 15.8 176 83-275 19-196 (757)
33 KOG0915 Uncharacterized conser 96.4 0.09 1.9E-06 59.5 15.4 185 83-269 1040-1304(1702)
34 PLN03200 cellulose synthase-in 96.3 0.35 7.6E-06 57.2 20.5 195 83-277 610-817 (2102)
35 PF12717 Cnd1: non-SMC mitotic 96.3 0.34 7.4E-06 42.7 16.4 128 95-229 1-140 (178)
36 KOG0213 Splicing factor 3b, su 96.3 0.043 9.3E-07 58.3 11.8 177 86-270 887-1064(1172)
37 KOG1248 Uncharacterized conser 96.2 0.33 7.1E-06 54.0 18.2 182 95-277 667-862 (1176)
38 KOG1824 TATA-binding protein-i 96.1 0.14 3E-06 55.9 14.2 179 95-276 491-727 (1233)
39 KOG1824 TATA-binding protein-i 96.0 0.42 9.2E-06 52.2 17.5 187 86-277 9-209 (1233)
40 COG5181 HSH155 U2 snRNP splice 95.9 0.079 1.7E-06 55.4 11.4 179 84-270 690-869 (975)
41 KOG0212 Uncharacterized conser 95.9 0.17 3.7E-06 52.4 13.4 179 86-268 4-193 (675)
42 KOG2023 Nuclear transport rece 95.8 0.06 1.3E-06 56.6 10.2 172 95-278 368-546 (885)
43 PF13513 HEAT_EZ: HEAT-like re 95.8 0.019 4.2E-07 40.5 4.6 53 139-191 3-55 (55)
44 PF13513 HEAT_EZ: HEAT-like re 95.7 0.032 6.9E-07 39.4 5.5 55 96-150 1-55 (55)
45 PF13646 HEAT_2: HEAT repeats; 95.7 0.082 1.8E-06 40.2 8.1 84 85-188 2-87 (88)
46 PF08167 RIX1: rRNA processing 95.4 0.74 1.6E-05 40.3 14.3 105 84-190 27-140 (165)
47 PF04118 Dopey_N: Dopey, N-ter 95.4 0.88 1.9E-05 44.1 16.0 191 83-277 11-257 (307)
48 KOG1060 Vesicle coat complex A 95.4 0.25 5.4E-06 53.0 13.0 165 86-266 39-204 (968)
49 KOG1241 Karyopherin (importin) 95.4 1.7 3.6E-05 46.7 18.8 195 82-276 596-816 (859)
50 KOG0168 Putative ubiquitin fus 95.3 1.2 2.5E-05 48.5 17.4 204 82-301 167-381 (1051)
51 cd03568 VHS_STAM VHS domain fa 95.1 0.1 2.3E-06 45.0 7.8 83 195-277 33-116 (144)
52 KOG0392 SNF2 family DNA-depend 94.7 1 2.3E-05 50.6 15.7 205 97-307 748-964 (1549)
53 KOG0166 Karyopherin (importin) 94.6 0.57 1.2E-05 48.4 12.8 196 82-277 237-442 (514)
54 PF05004 IFRD: Interferon-rela 94.6 3.2 6.8E-05 40.2 17.4 152 120-274 126-302 (309)
55 PF02985 HEAT: HEAT repeat; I 94.5 0.078 1.7E-06 33.4 4.0 30 243-272 1-30 (31)
56 cd03561 VHS VHS domain family; 94.3 0.46 9.9E-06 40.1 9.7 81 196-276 34-117 (133)
57 PF10508 Proteasom_PSMB: Prote 94.2 2.8 6E-05 43.2 17.0 180 87-271 43-231 (503)
58 PF10508 Proteasom_PSMB: Prote 94.0 4.6 0.0001 41.6 18.2 171 83-269 4-187 (503)
59 KOG1243 Protein kinase [Genera 94.0 1.8 3.8E-05 46.1 15.1 144 160-303 326-520 (690)
60 PF00790 VHS: VHS domain; Int 93.8 0.37 7.9E-06 41.0 8.2 80 196-275 39-122 (140)
61 PF08506 Cse1: Cse1; InterPro 93.7 0.93 2E-05 45.0 12.0 140 79-223 210-370 (370)
62 KOG2032 Uncharacterized conser 93.7 0.9 2E-05 46.5 11.9 183 82-267 217-412 (533)
63 KOG1058 Vesicle coat complex C 93.5 2.2 4.8E-05 45.9 14.6 110 120-230 131-255 (948)
64 KOG1241 Karyopherin (importin) 93.4 5.5 0.00012 42.9 17.5 181 93-274 228-438 (859)
65 PF10363 DUF2435: Protein of u 93.4 0.63 1.4E-05 37.1 8.4 75 82-157 3-77 (92)
66 KOG0414 Chromosome condensatio 93.3 6.1 0.00013 44.4 18.1 152 136-299 288-451 (1251)
67 COG1413 FOG: HEAT repeat [Ener 93.2 5.1 0.00011 38.3 15.9 62 195-266 176-237 (335)
68 cd03567 VHS_GGA VHS domain fam 93.1 0.47 1E-05 40.7 7.6 78 197-274 36-119 (139)
69 PF02985 HEAT: HEAT repeat; I 93.0 0.13 2.9E-06 32.3 3.1 29 200-228 1-29 (31)
70 cd03569 VHS_Hrs_Vps27p VHS dom 92.9 0.57 1.2E-05 40.3 7.9 82 195-276 37-119 (142)
71 COG5240 SEC21 Vesicle coat com 92.9 2.7 5.8E-05 44.2 13.8 180 84-270 305-554 (898)
72 PLN03076 ARF guanine nucleotid 92.5 12 0.00025 44.5 20.0 211 84-305 1138-1399(1780)
73 COG1413 FOG: HEAT repeat [Ener 92.4 4.4 9.6E-05 38.6 14.3 155 82-272 43-210 (335)
74 KOG1967 DNA repair/transcripti 92.3 1 2.3E-05 49.1 10.5 108 115-222 901-1018(1030)
75 KOG1967 DNA repair/transcripti 92.2 0.64 1.4E-05 50.7 8.8 112 82-193 909-1024(1030)
76 TIGR02270 conserved hypothetic 92.1 2.5 5.4E-05 42.6 12.6 116 125-267 88-203 (410)
77 KOG0213 Splicing factor 3b, su 92.0 1.6 3.4E-05 47.0 11.2 94 121-214 509-610 (1172)
78 PF12719 Cnd3: Nuclear condens 92.0 2.1 4.6E-05 40.8 11.5 126 145-270 5-142 (298)
79 KOG0166 Karyopherin (importin) 92.0 5.7 0.00012 41.2 15.1 186 84-270 68-265 (514)
80 KOG2149 Uncharacterized conser 91.8 3.4 7.3E-05 41.4 12.8 118 82-199 58-176 (393)
81 PF10274 ParcG: Parkin co-regu 91.8 1.8 3.8E-05 39.0 9.9 115 162-278 36-171 (183)
82 PF14500 MMS19_N: Dos2-interac 91.8 5.6 0.00012 37.6 13.8 159 83-248 81-256 (262)
83 KOG4653 Uncharacterized conser 91.2 16 0.00035 40.1 17.7 196 78-278 764-971 (982)
84 KOG1062 Vesicle coat complex A 91.2 0.63 1.4E-05 50.0 7.4 97 129-230 76-173 (866)
85 PF12460 MMS19_C: RNAPII trans 90.7 9.5 0.00021 38.1 15.1 122 124-249 272-413 (415)
86 smart00288 VHS Domain present 90.7 1.1 2.5E-05 37.8 7.3 80 196-275 34-115 (133)
87 TIGR02270 conserved hypothetic 90.6 4.8 0.0001 40.6 12.8 88 166-270 88-175 (410)
88 PF12460 MMS19_C: RNAPII trans 90.4 21 0.00045 35.7 18.5 188 79-271 186-394 (415)
89 KOG0803 Predicted E3 ubiquitin 90.4 24 0.00051 40.8 19.1 214 63-276 22-268 (1312)
90 COG5215 KAP95 Karyopherin (imp 90.0 29 0.00063 36.8 19.4 189 84-276 599-814 (858)
91 KOG2062 26S proteasome regulat 89.7 13 0.00028 40.2 15.4 136 120-270 516-652 (929)
92 PF13251 DUF4042: Domain of un 89.5 4.2 9.1E-05 36.5 10.3 162 98-274 2-177 (182)
93 PF04826 Arm_2: Armadillo-like 89.5 19 0.00041 34.0 15.3 172 86-261 58-252 (254)
94 KOG1078 Vesicle coat complex C 89.2 13 0.00028 40.3 15.0 171 91-270 291-531 (865)
95 KOG2025 Chromosome condensatio 89.0 10 0.00022 40.9 13.9 169 83-267 86-255 (892)
96 PF12830 Nipped-B_C: Sister ch 88.3 2.3 5E-05 37.9 7.8 74 198-277 7-80 (187)
97 KOG2032 Uncharacterized conser 87.9 11 0.00023 39.0 12.9 130 147-277 238-377 (533)
98 smart00802 UME Domain in UVSB 87.1 13 0.00029 30.4 10.9 90 114-205 2-95 (107)
99 PF12231 Rif1_N: Rap1-interact 86.8 33 0.00071 33.9 15.7 151 97-272 149-304 (372)
100 PF12783 Sec7_N: Guanine nucle 86.1 11 0.00023 32.7 10.6 109 95-204 35-154 (168)
101 cd03565 VHS_Tom1 VHS domain fa 86.1 3.7 8E-05 35.2 7.5 81 196-276 35-120 (141)
102 KOG0915 Uncharacterized conser 86.1 6.5 0.00014 45.3 11.1 134 144-278 978-1117(1702)
103 KOG0211 Protein phosphatase 2A 86.0 16 0.00035 39.8 13.8 190 79-274 155-387 (759)
104 KOG4524 Uncharacterized conser 86.0 14 0.0003 40.9 13.2 113 55-169 774-894 (1014)
105 PF08713 DNA_alkylation: DNA a 85.1 5.7 0.00012 35.3 8.6 91 122-219 119-209 (213)
106 PF12830 Nipped-B_C: Sister ch 84.9 22 0.00048 31.6 12.2 132 167-302 11-166 (187)
107 PF10521 DUF2454: Protein of u 84.6 22 0.00048 33.7 12.8 140 114-255 110-278 (282)
108 PF08623 TIP120: TATA-binding 84.4 1.6 3.4E-05 38.9 4.5 91 158-251 3-115 (169)
109 PF08064 UME: UME (NUC010) dom 83.8 22 0.00047 28.9 11.5 89 115-205 3-95 (107)
110 cd00197 VHS_ENTH_ANTH VHS, ENT 83.4 4.4 9.5E-05 32.9 6.5 73 197-269 35-113 (115)
111 KOG1243 Protein kinase [Genera 83.4 11 0.00025 40.1 11.0 155 149-309 273-443 (690)
112 PF08506 Cse1: Cse1; InterPro 83.4 27 0.00059 34.7 13.3 123 137-265 225-369 (370)
113 KOG1820 Microtubule-associated 83.3 21 0.00046 39.2 13.3 148 120-275 250-404 (815)
114 COG5218 YCG1 Chromosome conden 83.2 33 0.00071 36.5 13.9 170 82-267 91-262 (885)
115 PF05536 Neurochondrin: Neuroc 83.0 58 0.0012 34.1 16.0 224 82-315 5-258 (543)
116 cd03572 ENTH_epsin_related ENT 82.9 3.4 7.3E-05 34.8 5.7 72 197-269 36-117 (122)
117 KOG1240 Protein kinase contain 82.6 31 0.00066 39.4 14.2 103 84-190 427-534 (1431)
118 COG5181 HSH155 U2 snRNP splice 82.3 77 0.0017 34.1 17.4 136 124-267 801-943 (975)
119 PF12231 Rif1_N: Rap1-interact 81.7 31 0.00068 34.1 13.0 178 112-299 121-304 (372)
120 PF00790 VHS: VHS domain; Int 80.9 22 0.00047 30.1 10.1 98 90-195 17-120 (140)
121 KOG4653 Uncharacterized conser 80.3 21 0.00046 39.2 11.7 147 125-274 729-879 (982)
122 COG5116 RPN2 26S proteasome re 80.3 16 0.00034 38.7 10.4 160 99-274 479-654 (926)
123 KOG0413 Uncharacterized conser 79.6 13 0.00028 41.5 9.9 121 141-269 949-1071(1529)
124 KOG2149 Uncharacterized conser 79.4 22 0.00047 35.7 10.9 108 126-233 61-175 (393)
125 KOG1943 Beta-tubulin folding c 78.4 1.1E+02 0.0024 34.6 16.6 171 127-315 681-868 (1133)
126 PF08161 NUC173: NUC173 domain 78.1 53 0.0012 29.7 13.9 67 139-205 16-82 (198)
127 PF08767 CRM1_C: CRM1 C termin 78.0 42 0.00092 32.5 12.4 151 97-252 135-298 (319)
128 KOG3961 Uncharacterized conser 77.8 21 0.00047 33.2 9.5 118 84-201 116-247 (262)
129 KOG4224 Armadillo repeat prote 77.7 8.6 0.00019 38.6 7.4 183 127-315 130-319 (550)
130 KOG2259 Uncharacterized conser 77.7 64 0.0014 34.8 14.0 81 180-267 389-471 (823)
131 COG5098 Chromosome condensatio 76.8 53 0.0012 35.7 13.2 135 145-279 321-482 (1128)
132 cd03561 VHS VHS domain family; 76.8 25 0.00055 29.4 9.2 64 91-162 13-76 (133)
133 cd03568 VHS_STAM VHS domain fa 76.3 49 0.0011 28.4 11.4 64 91-162 13-76 (144)
134 KOG1949 Uncharacterized conser 76.1 1.3E+02 0.0027 33.0 17.4 142 121-267 81-245 (1005)
135 PF14664 RICTOR_N: Rapamycin-i 75.9 88 0.0019 31.1 14.3 165 94-268 80-266 (371)
136 PF08064 UME: UME (NUC010) dom 75.0 43 0.00093 27.1 11.7 78 93-172 26-104 (107)
137 cd03565 VHS_Tom1 VHS domain fa 75.0 45 0.00098 28.4 10.4 64 91-162 14-78 (141)
138 PF12074 DUF3554: Domain of un 73.7 88 0.0019 30.1 14.1 72 99-170 36-109 (339)
139 KOG1020 Sister chromatid cohes 73.3 55 0.0012 38.3 13.0 117 153-278 805-925 (1692)
140 COG5098 Chromosome condensatio 73.2 44 0.00095 36.3 11.5 100 191-298 336-437 (1128)
141 KOG0414 Chromosome condensatio 72.2 52 0.0011 37.4 12.3 70 163-232 358-432 (1251)
142 KOG1949 Uncharacterized conser 71.3 66 0.0014 35.0 12.3 144 126-273 177-333 (1005)
143 KOG1822 Uncharacterized conser 71.2 27 0.00059 41.4 10.2 164 138-302 108-290 (2067)
144 PF12719 Cnd3: Nuclear condens 69.6 1E+02 0.0022 29.2 16.0 73 82-158 26-99 (298)
145 KOG1240 Protein kinase contain 69.4 72 0.0016 36.6 12.6 149 121-274 575-728 (1431)
146 PF13001 Ecm29: Proteasome sta 69.1 49 0.0011 34.1 10.9 93 156-253 15-113 (501)
147 KOG1293 Proteins containing ar 68.9 81 0.0017 33.8 12.3 128 138-267 392-529 (678)
148 KOG1059 Vesicle coat complex A 68.8 95 0.002 33.9 12.8 176 83-277 37-216 (877)
149 PF05804 KAP: Kinesin-associat 68.3 1.6E+02 0.0035 32.1 14.8 168 102-274 470-652 (708)
150 COG5064 SRP1 Karyopherin (impo 68.1 91 0.002 31.3 11.8 180 83-266 72-267 (526)
151 PF11698 V-ATPase_H_C: V-ATPas 68.1 15 0.00032 30.9 5.6 108 157-271 5-115 (119)
152 KOG1060 Vesicle coat complex A 67.8 1.1E+02 0.0025 33.6 13.2 96 120-219 389-487 (968)
153 PF08569 Mo25: Mo25-like; Int 67.4 1.3E+02 0.0028 29.5 18.0 138 86-254 168-313 (335)
154 KOG4199 Uncharacterized conser 67.3 1.4E+02 0.0031 29.9 15.3 162 99-267 259-440 (461)
155 KOG1061 Vesicle coat complex A 66.7 18 0.00039 39.0 7.2 108 162-273 84-191 (734)
156 KOG0567 HEAT repeat-containing 66.2 61 0.0013 31.1 9.9 107 93-224 16-125 (289)
157 PF03224 V-ATPase_H_N: V-ATPas 66.0 1.3E+02 0.0027 28.8 14.4 147 83-230 106-271 (312)
158 KOG1059 Vesicle coat complex A 65.9 1.5E+02 0.0033 32.4 13.6 71 84-158 146-216 (877)
159 COG5218 YCG1 Chromosome conden 65.2 90 0.0019 33.4 11.6 119 149-271 33-161 (885)
160 PF05918 API5: Apoptosis inhib 65.1 1.9E+02 0.0041 30.6 15.2 167 79-255 20-191 (556)
161 PF05918 API5: Apoptosis inhib 64.9 56 0.0012 34.4 10.3 37 81-117 58-94 (556)
162 PF12397 U3snoRNP10: U3 small 64.9 56 0.0012 26.6 8.6 87 198-298 5-92 (121)
163 KOG1062 Vesicle coat complex A 64.7 22 0.00047 38.8 7.3 121 122-250 102-231 (866)
164 KOG2933 Uncharacterized conser 64.4 1.3E+02 0.0028 29.6 11.9 116 142-265 107-228 (334)
165 KOG0301 Phospholipase A2-activ 63.4 2.2E+02 0.0048 30.8 15.8 96 95-190 557-658 (745)
166 PF12765 Cohesin_HEAT: HEAT re 62.7 11 0.00024 25.5 3.2 26 240-265 16-41 (42)
167 PF05804 KAP: Kinesin-associat 62.7 1.7E+02 0.0036 31.9 13.7 140 86-228 494-649 (708)
168 KOG2160 Armadillo/beta-catenin 61.8 19 0.00041 35.6 5.9 70 205-277 130-202 (342)
169 PF11864 DUF3384: Domain of un 61.1 2E+02 0.0042 29.3 14.2 152 103-256 155-315 (464)
170 smart00288 VHS Domain present 61.1 99 0.0021 25.9 10.3 64 91-162 13-76 (133)
171 PF08167 RIX1: rRNA processing 60.6 1.1E+02 0.0025 26.5 15.0 124 120-275 22-147 (165)
172 PF03224 V-ATPase_H_N: V-ATPas 60.4 1.6E+02 0.0034 28.1 12.0 143 126-269 61-225 (312)
173 PLN03076 ARF guanine nucleotid 60.2 1.7E+02 0.0036 35.3 14.0 102 93-194 1358-1490(1780)
174 KOG2022 Nuclear transport rece 59.2 3E+02 0.0064 30.8 15.6 195 96-296 481-694 (982)
175 cd06561 AlkD_like A new struct 59.2 1.2E+02 0.0026 26.3 13.6 79 126-210 108-186 (197)
176 PF04826 Arm_2: Armadillo-like 58.7 1.6E+02 0.0035 27.7 15.5 189 83-277 13-211 (254)
177 KOG0392 SNF2 family DNA-depend 58.6 2.7E+02 0.0058 32.5 14.4 170 92-262 177-361 (1549)
178 COG5096 Vesicle coat complex, 58.5 2.9E+02 0.0062 30.4 15.6 71 121-194 125-196 (757)
179 KOG2160 Armadillo/beta-catenin 58.4 2E+02 0.0043 28.6 19.6 197 78-277 76-288 (342)
180 cd03569 VHS_Hrs_Vps27p VHS dom 58.4 1.2E+02 0.0025 25.9 10.8 63 91-161 17-79 (142)
181 PF10363 DUF2435: Protein of u 58.1 62 0.0013 25.7 7.3 73 201-276 5-77 (92)
182 KOG1061 Vesicle coat complex A 57.2 1.5E+02 0.0033 32.2 12.0 110 79-196 80-192 (734)
183 KOG1020 Sister chromatid cohes 57.1 2.9E+02 0.0062 32.8 14.6 167 93-276 1236-1410(1692)
184 PF08569 Mo25: Mo25-like; Int 56.3 2.1E+02 0.0045 28.2 15.7 77 125-201 166-246 (335)
185 PF11865 DUF3385: Domain of un 56.1 56 0.0012 28.4 7.4 67 126-192 89-156 (160)
186 KOG1077 Vesicle coat complex A 56.0 1.2E+02 0.0025 33.2 10.7 137 86-231 78-219 (938)
187 KOG1077 Vesicle coat complex A 55.8 1.9E+02 0.0041 31.7 12.2 67 162-228 280-358 (938)
188 KOG2081 Nuclear transport regu 55.7 1E+02 0.0022 32.4 10.1 108 81-195 386-497 (559)
189 KOG2259 Uncharacterized conser 55.4 60 0.0013 35.0 8.5 138 133-270 163-309 (823)
190 PF11698 V-ATPase_H_C: V-ATPas 54.9 63 0.0014 27.1 7.1 72 80-152 41-115 (119)
191 KOG4535 HEAT and armadillo rep 53.5 2.9E+02 0.0064 29.1 15.0 175 84-263 255-454 (728)
192 smart00145 PI3Ka Phosphoinosit 53.4 97 0.0021 27.8 8.6 102 162-273 42-155 (184)
193 PF01347 Vitellogenin_N: Lipop 52.2 1.4E+02 0.0029 31.2 10.8 132 124-267 432-585 (618)
194 KOG0567 HEAT repeat-containing 51.8 1.8E+02 0.0039 28.1 10.4 94 163-270 186-279 (289)
195 KOG1837 Uncharacterized conser 51.7 4.8E+02 0.01 31.0 16.4 75 200-276 1542-1616(1621)
196 cd03567 VHS_GGA VHS domain fam 51.5 1.5E+02 0.0033 25.2 11.0 65 90-162 13-77 (139)
197 KOG2434 RNA polymerase I trans 51.4 3E+02 0.0064 28.8 12.7 137 91-230 44-182 (500)
198 PF06371 Drf_GBD: Diaphanous G 51.0 1.3E+02 0.0029 25.8 9.1 50 178-227 130-186 (187)
199 PF08389 Xpo1: Exportin 1-like 50.6 1.3E+02 0.0029 24.3 10.4 45 177-223 99-148 (148)
200 PF13001 Ecm29: Proteasome sta 50.2 1.5E+02 0.0032 30.6 10.5 148 84-232 321-492 (501)
201 PF14500 MMS19_N: Dos2-interac 50.1 2.3E+02 0.0049 26.8 14.0 149 89-275 6-157 (262)
202 KOG1525 Sister chromatid cohes 49.5 1.6E+02 0.0036 34.1 11.4 147 120-271 256-405 (1266)
203 PF12243 CTK3: CTD kinase subu 49.1 1.6E+02 0.0035 25.3 9.0 103 162-270 6-118 (139)
204 KOG1517 Guanine nucleotide bin 49.1 39 0.00085 38.2 6.2 69 206-275 606-675 (1387)
205 PF06371 Drf_GBD: Diaphanous G 48.7 1.7E+02 0.0038 25.0 10.7 82 177-269 101-185 (187)
206 PF14631 FancD2: Fanconi anaem 48.4 5.3E+02 0.012 30.5 17.4 159 111-276 423-588 (1426)
207 KOG4524 Uncharacterized conser 48.1 68 0.0015 35.8 7.8 57 141-197 566-622 (1014)
208 PF10441 Urb2: Urb2/Npa2 famil 47.4 67 0.0014 29.3 6.8 156 101-276 57-218 (223)
209 cd07064 AlkD_like_1 A new stru 47.1 2.2E+02 0.0047 25.7 14.1 91 126-223 118-208 (208)
210 cd00871 PI4Ka Phosphoinositide 46.4 1.3E+02 0.0028 26.9 8.2 90 182-277 53-152 (175)
211 cd00197 VHS_ENTH_ANTH VHS, ENT 46.3 61 0.0013 26.0 5.8 40 78-117 33-72 (115)
212 KOG2274 Predicted importin 9 [ 45.6 4.9E+02 0.011 29.3 13.9 169 105-276 511-694 (1005)
213 PF05536 Neurochondrin: Neuroc 45.4 3.8E+02 0.0083 28.1 15.3 156 120-277 95-267 (543)
214 PF11864 DUF3384: Domain of un 45.1 3.5E+02 0.0076 27.5 15.7 194 100-310 195-419 (464)
215 KOG2022 Nuclear transport rece 44.7 97 0.0021 34.4 8.3 72 122-196 548-622 (982)
216 smart00802 UME Domain in UVSB 44.4 1.7E+02 0.0038 23.8 11.3 76 95-172 28-104 (107)
217 KOG1943 Beta-tubulin folding c 44.4 5.4E+02 0.012 29.5 19.5 190 81-277 340-579 (1133)
218 KOG0946 ER-Golgi vesicle-tethe 44.2 4.9E+02 0.011 29.0 13.3 164 79-271 19-195 (970)
219 PF11467 LEDGF: Lens epitheliu 44.1 25 0.00054 28.9 3.1 42 247-299 55-96 (106)
220 KOG1991 Nuclear transport rece 44.0 4.2E+02 0.0092 29.9 13.0 115 82-199 502-633 (1010)
221 KOG1087 Cytosolic sorting prot 43.9 68 0.0015 33.1 6.8 79 197-275 36-116 (470)
222 PF03378 CAS_CSE1: CAS/CSE pro 43.7 91 0.002 31.7 7.7 120 112-231 15-149 (435)
223 cd00256 VATPase_H VATPase_H, r 43.5 3.8E+02 0.0082 27.4 16.6 187 84-276 103-313 (429)
224 PF08623 TIP120: TATA-binding 43.4 1.1E+02 0.0025 27.1 7.3 81 213-303 41-121 (169)
225 PF10521 DUF2454: Protein of u 43.4 1.3E+02 0.0028 28.5 8.3 72 200-271 120-203 (282)
226 KOG2025 Chromosome condensatio 43.3 3.4E+02 0.0075 29.8 11.9 112 155-271 35-155 (892)
227 KOG1087 Cytosolic sorting prot 42.9 2.2E+02 0.0048 29.5 10.2 102 88-197 11-116 (470)
228 cd08050 TAF6 TATA Binding Prot 42.3 3.4E+02 0.0074 26.6 12.9 150 86-266 182-335 (343)
229 KOG2973 Uncharacterized conser 42.2 69 0.0015 31.5 6.2 62 203-267 7-68 (353)
230 cd07909 YciF YciF bacterial st 42.1 41 0.0009 29.1 4.3 117 181-302 15-134 (147)
231 cd00864 PI3Ka Phosphoinositide 42.0 1.5E+02 0.0032 25.7 7.7 74 164-247 39-114 (152)
232 PF01417 ENTH: ENTH domain; I 41.3 59 0.0013 26.8 5.0 72 198-270 38-120 (125)
233 KOG1078 Vesicle coat complex C 41.3 5.2E+02 0.011 28.6 12.9 73 199-277 245-317 (865)
234 PF11701 UNC45-central: Myosin 41.0 2.3E+02 0.0051 24.3 12.0 128 133-267 19-155 (157)
235 PF00514 Arm: Armadillo/beta-c 40.9 61 0.0013 21.0 4.1 27 243-269 13-39 (41)
236 PF00613 PI3Ka: Phosphoinositi 40.8 60 0.0013 29.0 5.3 101 163-273 44-156 (184)
237 PF01347 Vitellogenin_N: Lipop 40.1 4.2E+02 0.009 27.6 12.2 90 165-266 522-617 (618)
238 KOG2199 Signal transducing ada 39.6 97 0.0021 31.4 6.8 79 199-277 45-124 (462)
239 KOG4825 Component of synaptic 38.3 4.8E+02 0.01 27.2 12.6 169 93-267 404-593 (666)
240 PF11838 ERAP1_C: ERAP1-like C 38.1 3.4E+02 0.0073 25.3 10.5 114 145-271 40-158 (324)
241 PF12422 Condensin2nSMC: Conde 37.8 2.6E+02 0.0057 24.0 11.9 125 100-232 14-152 (152)
242 PF12333 Ipi1_N: Rix1 complex 37.1 65 0.0014 25.9 4.5 34 200-233 12-45 (102)
243 KOG0889 Histone acetyltransfer 36.7 2.5E+02 0.0053 36.0 10.6 151 124-274 985-1158(3550)
244 PF04147 Nop14: Nop14-like fam 36.7 6.3E+02 0.014 28.0 14.1 169 84-270 428-621 (840)
245 PF14676 FANCI_S2: FANCI solen 36.6 2.9E+02 0.0063 24.1 12.8 116 141-267 36-157 (158)
246 PF00514 Arm: Armadillo/beta-c 36.2 84 0.0018 20.3 4.2 29 123-151 12-40 (41)
247 COG5215 KAP95 Karyopherin (imp 36.1 5.9E+02 0.013 27.5 16.6 217 84-303 44-297 (858)
248 PF12074 DUF3554: Domain of un 35.4 3.1E+02 0.0067 26.3 9.7 52 177-228 36-90 (339)
249 KOG1991 Nuclear transport rece 34.4 7.3E+02 0.016 28.1 13.9 180 119-320 123-314 (1010)
250 KOG2549 Transcription initiati 34.2 5.9E+02 0.013 27.0 17.5 182 84-305 209-396 (576)
251 PF01603 B56: Protein phosphat 32.8 3.8E+02 0.0082 26.9 10.1 113 81-193 254-370 (409)
252 PF01417 ENTH: ENTH domain; I 32.5 1.6E+02 0.0035 24.1 6.3 41 79-119 36-79 (125)
253 KOG4413 26S proteasome regulat 31.2 3.4E+02 0.0074 27.3 9.0 70 200-269 83-155 (524)
254 PF12333 Ipi1_N: Rix1 complex 31.2 2.6E+02 0.0057 22.3 7.1 63 114-176 2-65 (102)
255 KOG2062 26S proteasome regulat 30.0 1.8E+02 0.0039 31.9 7.4 90 131-228 563-653 (929)
256 KOG2038 CAATT-binding transcri 29.6 8.3E+02 0.018 27.3 12.2 143 82-231 196-373 (988)
257 KOG0929 Guanine nucleotide exc 27.1 5E+02 0.011 30.9 10.7 56 137-192 1242-1297(1514)
258 KOG2137 Protein kinase [Signal 26.5 8.7E+02 0.019 26.5 12.8 103 161-268 386-493 (700)
259 cd00869 PI3Ka_II Phosphoinosit 26.5 2.3E+02 0.0049 25.2 6.4 102 163-275 38-152 (169)
260 COG5116 RPN2 26S proteasome re 26.4 2.1E+02 0.0045 30.7 7.0 91 131-229 560-651 (926)
261 KOG3616 Selective LIM binding 26.4 6.7E+02 0.014 28.1 10.7 90 137-228 1239-1337(1636)
262 COG5117 NOC3 Protein involved 26.4 1.6E+02 0.0035 30.5 6.1 119 98-230 426-576 (657)
263 KOG1525 Sister chromatid cohes 26.2 1.1E+03 0.024 27.7 16.4 69 162-230 257-331 (1266)
264 PF08389 Xpo1: Exportin 1-like 26.0 3.5E+02 0.0076 21.8 8.3 50 212-266 99-148 (148)
265 KOG0803 Predicted E3 ubiquitin 25.9 1.1E+03 0.025 27.7 15.7 116 118-233 119-268 (1312)
266 COG5064 SRP1 Karyopherin (impo 25.7 4.9E+02 0.011 26.3 9.0 96 129-228 205-314 (526)
267 COG5240 SEC21 Vesicle coat com 25.5 8.9E+02 0.019 26.3 12.2 53 99-155 281-335 (898)
268 KOG1822 Uncharacterized conser 25.5 9.7E+02 0.021 29.4 12.5 137 94-230 105-250 (2067)
269 cd08050 TAF6 TATA Binding Prot 25.1 2.7E+02 0.0058 27.3 7.4 38 95-132 230-267 (343)
270 PF12612 TFCD_C: Tubulin foldi 25.1 4.8E+02 0.01 23.0 8.6 36 160-195 3-38 (193)
271 KOG1851 Uncharacterized conser 25.0 8.9E+02 0.019 29.1 12.0 95 177-272 1500-1599(1710)
272 KOG2229 Protein required for a 24.9 6.3E+02 0.014 26.7 9.9 92 179-273 35-128 (616)
273 PF14726 RTTN_N: Rotatin, an a 24.9 3E+02 0.0065 22.2 6.3 35 78-112 26-60 (98)
274 PF10742 DUF2555: Protein of u 24.8 70 0.0015 23.4 2.4 41 82-122 12-55 (57)
275 PF08568 Kinetochor_Ybp2: Unch 24.7 8.6E+02 0.019 25.8 13.7 105 163-267 64-195 (633)
276 KOG2137 Protein kinase [Signal 24.6 9.4E+02 0.02 26.2 12.5 185 78-276 269-463 (700)
277 PF04388 Hamartin: Hamartin pr 24.5 4.5E+02 0.0098 28.3 9.4 77 97-173 83-161 (668)
278 KOG2005 26S proteasome regulat 24.3 2.4E+02 0.0052 30.7 7.0 32 81-112 47-78 (878)
279 smart00185 ARM Armadillo/beta- 24.0 1.1E+02 0.0025 18.9 3.1 28 200-227 13-40 (41)
280 PF14868 DUF4487: Domain of un 23.9 7.8E+02 0.017 26.1 10.8 80 188-267 465-548 (559)
281 PF03378 CAS_CSE1: CAS/CSE pro 23.6 7.9E+02 0.017 25.0 11.2 133 94-228 168-324 (435)
282 KOG0929 Guanine nucleotide exc 23.4 4.3E+02 0.0093 31.4 9.3 172 100-277 1246-1461(1514)
283 cd03562 CID CID (CTD-Interacti 23.2 3.8E+02 0.0083 21.2 7.6 69 203-276 41-109 (114)
284 PF08324 PUL: PUL domain; Int 22.9 4.1E+02 0.0089 24.4 7.9 59 212-270 170-230 (268)
285 KOG0413 Uncharacterized conser 22.8 7.1E+02 0.015 28.7 10.3 115 161-278 572-693 (1529)
286 smart00638 LPD_N Lipoprotein N 22.7 7.1E+02 0.015 25.7 10.3 76 177-263 493-570 (574)
287 smart00638 LPD_N Lipoprotein N 22.3 8.7E+02 0.019 25.0 12.8 136 124-267 394-541 (574)
288 KOG4224 Armadillo repeat prote 21.8 8.7E+02 0.019 24.8 11.4 149 125-277 210-369 (550)
289 KOG1848 Uncharacterized conser 21.3 7.5E+02 0.016 29.3 10.5 158 125-302 999-1164(1610)
290 PF10350 DUF2428: Putative dea 21.2 6.7E+02 0.014 23.3 13.6 57 182-250 115-178 (255)
291 PF08045 CDC14: Cell division 21.1 7.2E+02 0.016 23.6 10.9 31 81-111 2-32 (257)
292 KOG2021 Nuclear mRNA export fa 21.0 1.2E+03 0.026 26.1 11.7 200 105-310 422-643 (980)
293 KOG2759 Vacuolar H+-ATPase V1 20.7 1.9E+02 0.0042 29.5 5.4 86 177-271 350-438 (442)
294 PF04388 Hamartin: Hamartin pr 20.7 9E+02 0.019 26.1 10.7 93 179-274 48-143 (668)
No 1
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-58 Score=431.22 Aligned_cols=321 Identities=45% Similarity=0.608 Sum_probs=302.1
Q ss_pred CchhHhhhhcc-CCCC-ccCCCCCCCCccCCCcccCCCCCcc-------ccccccCCCCCCcCCCCCCCCcccceeccCC
Q 020587 2 MSETALRDLNT-LPSS-DRKNESSSKGSFAKPFVGSANENVD-------VSLVSTHVNGNQTGNAGPGIANSEVEYIDSE 72 (324)
Q Consensus 2 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~e 72 (324)
|..++|+|+++ +|++ +|++| .|++..|||.|+++|+.+ .+.+|+++++.++++++.+.+.++++|+.++
T Consensus 1 ~~a~~l~~~~~~~p~sqer~~d--~~as~~~~~~gK~~gs~e~~p~~~~~pl~h~~~t~~~~~~~~~e~~~~~~e~~~sk 78 (334)
T KOG2933|consen 1 MDAKALKDLRNALPVSQERFQD--KKASIVKSCMGKMSGSHEDKPPTNHPPLDHNSPTPQEAIKQEGERLIHSVEYIVSK 78 (334)
T ss_pred CcchhhhhccccCccchhcccc--cccccccchhhcccCccccCCCCCCCCccccCCCchhhhccccccccccHHHhhhc
Confidence 67899999999 8887 99999 889999999999999998 5668999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH
Q 020587 73 NLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS 152 (324)
Q Consensus 73 eL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~ 152 (324)
+|.||++|+..+++++.+|+|+||+..|+||+.||||+.||++.+..+|++++..|++.+|||||+|||+||+|++|||+
T Consensus 79 ~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 79 NLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS 158 (334)
T ss_pred ccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 153 AYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 153 ~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
.|++.+++.+|.++.+||+|++++|+|||++|++||.+|+.+++|+++++.|+++++|.||.+|++.+.|+.+|+.++|+
T Consensus 159 ~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 159 SLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC-CCCCCCCCCcchhHHHHHHHhcCChhhHHHHHH
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD-SAPATVSDSPEMDSWENFCQSKLSPLSAQAVLR 311 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~-~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~ 311 (324)
..+..++...+.+++..-+.|..|+.|++||-.+..+..+|..... +.+...+.+-+...|+.||++++++.++|+++|
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~~~~lv~~e~~n~e~r~~t~~~v~~~~~~~~~~~~~lr 318 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKTAQELVEDESENPEVRKATWRGVCPKSLTGLSAQAVLR 318 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHHhhhhcchhhcCcchhhhhhhhcCccCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999987664 222222222357899999999999999999999
Q ss_pred Hhhh---hccccccCC
Q 020587 312 VTNI---AREGLVIGS 324 (324)
Q Consensus 312 ~~~~---~~~~~~~~~ 324 (324)
++++ +|+|++.|+
T Consensus 319 ~~n~~~~~R~~~~~~~ 334 (334)
T KOG2933|consen 319 VTNVAGWAREGLVLGS 334 (334)
T ss_pred HhhhhhHhhhcccccC
Confidence 9995 799999875
No 2
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=100.00 E-value=5.8e-32 Score=245.86 Aligned_cols=187 Identities=29% Similarity=0.373 Sum_probs=149.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHc-----HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587 92 DSKDWVVVCEALNNVRRLSIFH-----KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL 166 (324)
Q Consensus 92 ~s~dW~~r~eaL~~LRrLa~~h-----~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll 166 (324)
.+.||++|++||+.||+++.+| ++.+...+++++..+.+.++|+||+|+++||.++++|+..+++.|+++++.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5789999999999999999988 34455678888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhcC-hhhh-HHHHhhhccCCCHHHHHHHHHHHHhhccccc--ccchhhc-cHH
Q 020587 167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVS-PILL-LPKLQPYLKNRNPRIRAKASMCFSRSVPRLG--VEGIKEY-GID 241 (324)
Q Consensus 167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs-~~~l-l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g--~~~i~~~-~~~ 241 (324)
+.||++++++|+||+++|..||..|+++++ +.++ ++.+..+.+||||.+|..++.|+..+++.++ ...+... .++
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 999999999999999999999999999999 6777 6788899999999999999999999999999 3333322 368
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
.+++.+.++++|++|+||++||++|+.|+++||+.+.
T Consensus 177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 177 QLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 9999999999999999999999999999999999885
No 3
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.67 E-value=4e-15 Score=157.44 Aligned_cols=194 Identities=20% Similarity=0.176 Sum_probs=175.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
..+...+.++||++|.|||..+-....... +...+..+.+...+.-..+|.+..|+..|..++..|+..|+..+.+|..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 477788899999999999999988866544 2333445556667777889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
.+.+.||+++++.+.++++++..++++++..++..++++.+..+++||||++|..+..++.+++..+++........+.+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765556689999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 244 IQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 244 l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
++.+.+.++|.+.+||.+|..++..+++++++...
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999987764
No 4
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=9.8e-09 Score=104.68 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=152.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
+...+..+.+..|..+.-++.-+..++..-|..+...+.++++.+.+.+.|....|.++|..|+-.+.....+ +.+.
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~ 332 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQ 332 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHH
Confidence 4445555555699999999999999988889999999999999999999999999999999999998888763 3377
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-HHHhhcC---hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc-cccchhhc
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALV-AMTTWVS---PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL-GVEGIKEY 238 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~-amv~~vs---~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~-g~~~i~~~ 238 (324)
.++|.|+...++.+.-+.+....-.. +.+..+. -.-++|.|.+++..++..++++++..+.+.+..+ ++..+..+
T Consensus 333 ~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 333 KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 77888888877765333332222211 2233332 2337889999999999999999999999999988 44555556
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
++.|++.+..-+.|..||+|.-+-++|..+.+-.+...+
T Consensus 413 -l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 413 -LPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred -HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999877776665553
No 5
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.4e-05 Score=81.94 Aligned_cols=191 Identities=20% Similarity=0.122 Sum_probs=138.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHH-HHHHHHHHHHHhhhhH
Q 020587 80 IDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKT-AIMTAADIFSAYNDRM 158 (324)
Q Consensus 80 pe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~-A~~tl~dLf~~L~~~m 158 (324)
++..+..+++.+++.+-..+..+-..+-++.....-.. ..=..++..+.+.+.|..+..-|+ +..+..-.+..||+.+
T Consensus 132 ~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~-~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 132 GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIES-LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhh-hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 33344455555555544444444444444433221111 112346778889999999999996 8888899999999999
Q ss_pred HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587 159 IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 159 ~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
+||+-.++|.+|.++++..+-||++|..|..+|..+.++.. ++|.+..++.....+-...+.+++..+.. ..+. .
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~-q 288 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPK-Q 288 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchH-H
Confidence 99999999999999999999999999999999999988754 66665555544455555555566653333 2222 3
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
....+..+++.+..-+.|..||+|++|..++..+-.+.
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 44569999999999999999999999999998665544
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00019 Score=78.04 Aligned_cols=188 Identities=19% Similarity=0.211 Sum_probs=145.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Q 020587 89 AGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQ 168 (324)
Q Consensus 89 ~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~ 168 (324)
..|.|.+|..|.-||--|-.++...++.+.+.|.+|+..|+..++|+---|=-.||.++|.|...|...+..+....++.
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~ 434 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP 434 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999887776665
Q ss_pred HH-HHhcC-ChHHHHHHHHHHHHHHHhhcChhhhHHH--------HhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 169 LL-LKSSQ-DKRFVCEAAEKALVAMTTWVSPILLLPK--------LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 169 LL-~Ka~~-sk~FI~e~A~~AL~amv~~vs~~~ll~~--------L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
+| ...-+ .+.-|...|..||......|....+-|. +..-.++.++.||..+..-|..+..-.+.. +..|
T Consensus 435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-F~pY 513 (1075)
T KOG2171|consen 435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-FIPY 513 (1075)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-hHhH
Confidence 44 44333 3667778888888888888877665442 334456888999999988888877766555 4445
Q ss_pred cHHHHHHHHHHhccCCC-HHHHHHHHH---HHHHHHHHhhhcCC
Q 020587 239 GIDKLIQVAASQLSDQL-PESREAART---LLLELQSVYEKSHD 278 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~-pEvR~~AR~---~l~~L~~~~~~~a~ 278 (324)
.+++++.+..+|.-++ -|-|....+ ++..+-...++..+
T Consensus 514 -~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 514 -FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred -HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 6889999999998777 444444433 44444445555555
No 7
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.01 E-value=0.0011 Score=64.07 Aligned_cols=196 Identities=16% Similarity=0.090 Sum_probs=143.4
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN- 155 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~- 155 (324)
+.+..|.++++.+.++.=+.|..||..+.++..+| ++++.....+++..+.+.+|..++.=...|+.+++-++-.+|
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 44567999999999888889999999999998766 789999999999999999999999888889999999999987
Q ss_pred -hhHHhhHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhh--cChhh------hHHHHhh--hcc----------CCC
Q 020587 156 -DRMIDLLDPLLVQLLLKSSQD--KRFVCEAAEKALVAMTTW--VSPIL------LLPKLQP--YLK----------NRN 212 (324)
Q Consensus 156 -~~m~~~~d~ll~~LL~Ka~~s--k~FI~e~A~~AL~amv~~--vs~~~------ll~~L~~--~~~----------hKN 212 (324)
..-+..++.+.+.|..-+.+. ..-+|..+-.||..++-- ..+.. ++..++. +.+ ..+
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 666777888888776665544 234556666666544322 22222 3332322 111 124
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 213 PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 213 p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+.|...+...-.-++..++...+.. ..+..++.+..+|.-.+.+||-+|=+++..|.....+
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5677776665555555555544443 3677888999999999999999999999988777764
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00098 Score=72.76 Aligned_cols=195 Identities=18% Similarity=0.179 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc--CcchHHHHHHHHHHHHHHHH---hhhhHHhhHHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK--NPRSAVCKTAIMTAADIFSA---YNDRMIDLLDPLLVQ 168 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk--sLRS~Vsk~A~~tl~dLf~~---L~~~m~~~~d~ll~~ 168 (324)
.|=..-.++|+.+-.|+...|.++.+.+.+|+....+..+ ++...+=..|+.++.-+.++ ..+...++.+.++++
T Consensus 218 ~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 218 GDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred cchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 3433345666666677777889999999998876666554 58888888898888888877 445556788999999
Q ss_pred HHHHhcC---Ch-------------HHHHHHHHHHHHHHHhhcChhhhHH----HHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 169 LLLKSSQ---DK-------------RFVCEAAEKALVAMTTWVSPILLLP----KLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 169 LL~Ka~~---sk-------------~FI~e~A~~AL~amv~~vs~~~ll~----~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
+|+.+-+ +. .-....|..+|+.+..+.++..++| .+...+++-++.-|..+...|..+.+
T Consensus 298 ~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E 377 (1075)
T KOG2171|consen 298 LLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE 377 (1075)
T ss_pred HHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9987643 11 1234568899999999999988776 45678889999999999888888777
Q ss_pred cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhH
Q 020587 229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSA 306 (324)
Q Consensus 229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 306 (324)
|........++++++++..+|+|..|-||++|=.++..+..-|. -..+.++++.++|...
T Consensus 378 --Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~----------------p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 378 --GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ----------------PEIQKKHHERLPPALI 437 (1075)
T ss_pred --ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc----------------HHHHHHHHHhccHHHH
Confidence 44434444699999999999999999999999988875544443 3456666666665543
No 9
>PRK09687 putative lyase; Provisional
Probab=97.75 E-value=0.0015 Score=62.14 Aligned_cols=166 Identities=18% Similarity=0.122 Sum_probs=104.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHh-----------HcHH--------HHHHhhh-------hHHHHHHHH-ccCcc
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSI-----------FHKE--------AMLDILG-------DVIPLVVKS-LKNPR 136 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~-----------~h~~--------~l~~~L~-------~iv~~l~~~-vksLR 136 (324)
+..++..|.++|...|..++..|+.+-. .+++ ...++|+ +.++.+... .++.-
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d 104 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS 104 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC
Confidence 4567777888888888888888775421 1110 0012232 233444433 34444
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHH
Q 020587 137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIR 216 (324)
Q Consensus 137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR 216 (324)
..|-+.|+.++|++.... ......++..|.....+.+..||..+-.+|. .+.....++.|...+++.++.||
T Consensus 105 ~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L~d~~~~VR 176 (280)
T PRK09687 105 ACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLLKDPNGDVR 176 (280)
T ss_pred HHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhcCCCHHHH
Confidence 555557777777653211 1112334555556666667778888777774 34456677888888888888888
Q ss_pred HHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 217 AKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 217 ~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
..++..|-.+ +. +.+...+.+.+.+.|.+++||..|...+.
T Consensus 177 ~~A~~aLg~~----~~------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 177 NWAAFALNSN----KY------DNPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHhcC----CC------CCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8887777655 11 13456677777889999999999888885
No 10
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.63 E-value=0.0092 Score=60.22 Aligned_cols=192 Identities=11% Similarity=0.170 Sum_probs=145.2
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
.+.+.+.+++. +.=.++-+||..|..+......-+. ..+.+|+..+...+.+ =....-+.|+..+.+|+++-...|.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 45677777764 4788899999999998776543343 4678888888888887 5556667899999999999999999
Q ss_pred hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
++.+..+..+|.-+.++ +..++.+++.|+....++-+... +..|.+.+..---..-..+..++.++++++..+.+...
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 99999999999999987 66777777777777666665554 33232222221222223345589999999988765544
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
++-+.+++.+.-+-.+..||+.+--+|-.+....|..
T Consensus 446 -l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 446 -LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred -hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 8899999999999999999999999998888877733
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.59 E-value=0.0013 Score=66.48 Aligned_cols=176 Identities=17% Similarity=0.128 Sum_probs=97.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587 87 LVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL 166 (324)
Q Consensus 87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll 166 (324)
+...+.+++|.-|..|+..+.++....|+.+... +++.+.+.+++....|..+|+.++.++ +.-.+...+.+..++
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 3333445555555555555555555444433221 344445555555555666666555555 111111113334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
..|....+..+.|+....-+.|..++..-.. ..+++.+...+++.++.|+-.++.++..+-.... ....
T Consensus 195 ~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-------~~~~ 267 (526)
T PF01602_consen 195 RILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-------LLQK 267 (526)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-------HHHH
T ss_pred HHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-------HHHh
Confidence 4444444555555555554444443332211 2255556666666666666666666664333211 2678
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
+++.+.+++++.++++|..+-..+..+...+
T Consensus 268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 268 AINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 8999999999999999999999988776666
No 12
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.56 E-value=0.00078 Score=54.36 Aligned_cols=92 Identities=21% Similarity=0.193 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHH
Q 020587 141 KTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKAS 220 (324)
Q Consensus 141 k~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa 220 (324)
+-++++++..+.+++..+.++++.+++++|.-+.| .+++||..++
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D-----------------------------------~d~rVRy~Ac 48 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDD-----------------------------------QDSRVRYYAC 48 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCC-----------------------------------CcHHHHHHHH
Confidence 45778888888888877777777776666655544 5556666666
Q ss_pred HHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 221 MCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 221 ~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
+.|.++++..+.. +..+ ...+.+.+.+.+.|.++.||..|.-+-+.|
T Consensus 49 EaL~ni~k~~~~~-~l~~-f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 49 EALYNISKVARGE-ILPY-FNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 6666666554433 3333 688999999999999999999997655443
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.52 E-value=0.0013 Score=52.28 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=83.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..+++.|.+.+|..+..++..|..++...++.....+. ++++.+++.+.+-...|.+.|+.+++.|............
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 556777788889999999999999999876665555455 7888999999998999999999999999876654444333
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587 163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMT 192 (324)
Q Consensus 163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv 192 (324)
+ .+++.|++...+.+.-+++.+..+|..++
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 26777777776666677777777776654
No 14
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.48 E-value=0.0026 Score=51.33 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCCh
Q 020587 98 VVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDK 177 (324)
Q Consensus 98 ~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk 177 (324)
.|..||--|..+++.-+..+...+.+|++.|+..+.|--+.|=-.||.++..+.+..+..+.+++..+...|.+.++|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36778889999988877778889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 020587 178 RFVCEAAE 185 (324)
Q Consensus 178 ~FI~e~A~ 185 (324)
.-|+..|+
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 88888874
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.46 E-value=0.0047 Score=62.44 Aligned_cols=171 Identities=18% Similarity=0.174 Sum_probs=119.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-h
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-L 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-~ 161 (324)
.+..+++... .+=.++.+++..|=.+..... .+......+++.+.+-.-.+-|-+-..+..++ ..++ .
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~-----~~~~~~ 76 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYL-----HEDPEL 76 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHT-----TTSHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----hcchhH
Confidence 4455555554 466778888777766544322 23344556777777666666555554443332 3333 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+-.++..|.+-..+.|..++..|-++|..+...---..+++.+...+.|++|.||++++.++..+.+.. ++.+. ..
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~---~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVE---DE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHH---GG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHH---HH
Confidence 566777788778888999999998888887754444557778889999999999999999999999873 32121 12
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
+++.+.+++.|.++.|+.+|=.++..+
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 799999999999999999998888766
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.42 E-value=0.0024 Score=57.89 Aligned_cols=139 Identities=15% Similarity=0.105 Sum_probs=95.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH-HHH
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL-LVQ 168 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l-l~~ 168 (324)
.+.+..=.-...|+..+..|+.+-...+.+.++.+++.+++.+.+-...+...|..|+..|+...+ +...+ +..
T Consensus 61 ~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~ 135 (228)
T PF12348_consen 61 QLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEI 135 (228)
T ss_dssp -S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHH
Confidence 334334445566666666766654444666788889999999999999999999999999998766 12233 555
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhcC--------h---hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 169 LLLKSSQDKRFVCEAAEKALVAMTTWVS--------P---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs--------~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
+..-..+.+..+|..+-..|..++...+ . ..+++.|..++.+.++.||..+-.++..+...+|..
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 5556678899999999999999998887 1 236677889999999999999999998887777654
No 17
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.0057 Score=58.24 Aligned_cols=118 Identities=14% Similarity=0.029 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587 92 DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171 (324)
Q Consensus 92 ~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~ 171 (324)
+++||..|..|...|-.+...++.. ...++..+...+.|....|-+.|+.+++.+ + -+..++.|+.
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~------~~~ai~~L~~ 166 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----N------DEAAIPLLIN 166 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C------CHHHHHHHHH
Confidence 4455555555555554443222110 122334455556666666777777666543 1 1346677777
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 172 KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 172 Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
.+.+.+..||..|-.+|..| .......++.|...+++.|+.||..++..|..
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 77777888998888888887 33345677788888888899998888877753
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0059 Score=62.77 Aligned_cols=152 Identities=21% Similarity=0.188 Sum_probs=123.6
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHHhh--
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKA---LVAMTTW-- 194 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~A---L~amv~~-- 194 (324)
.+..+++.++.+..+.-++|---||..+-.+++..+.++-.+++.+..+|=+-.+++..-++..|+-- +..|+..
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 57889999999999999999999999999999999999999999999999999999877777666532 3333322
Q ss_pred --cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HHH
Q 020587 195 --VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLE-LQS 271 (324)
Q Consensus 195 --vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~-L~~ 271 (324)
-+-+.++|.|...+...||-.|.....|+..+-..-+-+ +..+ ++.+++-+.++|+|.++|+|...--++.. |++
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 234568889999998999999999999999776643322 4445 89999999999999999999888876654 344
Q ss_pred Hh
Q 020587 272 VY 273 (324)
Q Consensus 272 ~~ 273 (324)
+-
T Consensus 239 I~ 240 (675)
T KOG0212|consen 239 IR 240 (675)
T ss_pred Hh
Confidence 43
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.012 Score=61.79 Aligned_cols=185 Identities=18% Similarity=0.159 Sum_probs=124.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHHhh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~~~ 161 (324)
+..+|..-.++|=+.|-.-...+--|...+|+-+.+.|+.|+.-++....+..=.|+-+||...-.+++. .+.-+.||
T Consensus 217 le~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 217 LEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 4444554566666666555555566677899999999999999999999999999999999877777665 34555666
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 020587 162 LDPLLVQLLLK--------------------------------------------------------------------- 172 (324)
Q Consensus 162 ~d~ll~~LL~K--------------------------------------------------------------------- 172 (324)
++.++|.||..
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 66666666522
Q ss_pred -------------------------hcCChHHHHHHHHHHHHHHHhhcC------hhhhHHHHhhhccCCCHHHHHHHHH
Q 020587 173 -------------------------SSQDKRFVCEAAEKALVAMTTWVS------PILLLPKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 173 -------------------------a~~sk~FI~e~A~~AL~amv~~vs------~~~ll~~L~~~~~hKNp~VR~~aa~ 221 (324)
.+...=+++|++--||.+|.+.|- .+.++|.|.+.+.+|.|.||+-+|=
T Consensus 377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee
Confidence 222234677787788888777652 2347777788888888888887654
Q ss_pred HHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 222 CFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 222 ~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
-|++.-.-.-... ...-...++.-+.+.+-|++-.|.++|=.++.+|
T Consensus 457 TLsRys~wv~~~~-~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 457 TLSRYSKWVVQDS-RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred eHhhhhhhHhcCC-hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4443322111111 1111556666667777788888888887776433
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=97.24 E-value=0.01 Score=63.72 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh-
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL- 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~- 161 (324)
.+.++.+.|.+.|=.++.+|++.+-.+-...- ....+...|++.+.+-.-.+=|-....+..+ . ...|+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~y----a-~~~pel 102 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-----DVSYLFVDVVKLAPSTDLELKKLVYLYVLST----A-RLQPEK 102 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-ccChHH
Confidence 34556666777766677888876665433221 2223334455566655555555444333322 2 23344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+-..+..|.+=+.+.|.+||--|-++|..|-..--...+++.|..++.|++|-||++++.++.++...- ++.+. ..
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~---~~ 178 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFY---QQ 178 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-ccccc---cc
Confidence 456677787778889999999988887765444333446667889999999999999999999987753 33222 22
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
.+++.+.++|.|.+|.|...|-.++..+...
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 3556677789999999999998877766543
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.22 E-value=0.0088 Score=65.57 Aligned_cols=156 Identities=20% Similarity=0.175 Sum_probs=92.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH------------------Hhhh----hHHHHHHHHccCcchHHHHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML------------------DILG----DVIPLVVKSLKNPRSAVCKTA 143 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~------------------~~L~----~iv~~l~~~vksLRS~Vsk~A 143 (324)
.++..|.++||..|..|+..|.++-. ++.+. ..++ ..+..+...++|.-..|-..|
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~--~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD--VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC--cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence 34567789999999999988887521 11110 0111 012344555555555555555
Q ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHH
Q 020587 144 IMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCF 223 (324)
Q Consensus 144 ~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L 223 (324)
+.+++.+.. + +.+...|+.-..+..-.||..|-.+|.. +.....++.|...+++.++.||..++..|
T Consensus 796 ~~aLg~~g~-------~--~~~~~~l~~aL~d~d~~VR~~Aa~aL~~----l~~~~a~~~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 796 LAALAELGC-------P--PDDVAAATAALRASAWQVRQGAARALAG----AAADVAVPALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHHHhcCC-------c--chhHHHHHHHhcCCChHHHHHHHHHHHh----ccccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 555444410 0 1122334444556666777777777754 34455667777777777777777777777
Q ss_pred HhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 224 SRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 224 ~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
..+ . +-+...+.+.+.++|.+++||..|.++|.
T Consensus 863 ~~~----~-------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 863 TRW----P-------GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred hcc----C-------CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 653 0 12334556667778888888888887764
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.12 E-value=0.0058 Score=46.65 Aligned_cols=85 Identities=27% Similarity=0.257 Sum_probs=66.1
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 166 LVQLLLKS-SQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 166 l~~LL~Ka-~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
++.|++.+ .+.+..++..+-.+|. .....++++.|...++|.|+.||..++..|..+ | .+..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~--------~~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G--------DPEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H--------HHHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------CHHHH
Confidence 46777777 6778999988888777 556778999999999999999999999988754 2 35566
Q ss_pred HHHHHhccC-CCHHHHHHHHHHH
Q 020587 245 QVAASQLSD-QLPESREAARTLL 266 (324)
Q Consensus 245 ~~l~~~L~D-~~pEvR~~AR~~l 266 (324)
+.+.+.+.| .+..+|..|-.++
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhc
Confidence 677776655 5667798887665
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.07 E-value=0.018 Score=67.52 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=140.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHH---------------HHH------h----------------hhhHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEA---------------MLD------I----------------LGDVI 125 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~---------------l~~------~----------------L~~iv 125 (324)
+..+++.|++.+++.+.+++..|-.|+... ++. ... . -...+
T Consensus 532 IppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 532 VPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 445667788889999999988888885321 110 000 0 01246
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-----
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----- 199 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----- 199 (324)
+.+...+++....+-+.|+.+++.+|..-.+.... .....+++|+......+.=++.++..||..+........
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v 691 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYA 691 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67888888888999999999999999854433222 235678888888877777789999999999987665442
Q ss_pred ---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 200 ---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 200 ---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
+++.|...+++.+..++..++..|.+++..-.. .........++.+.++|.++++++|+.|-.++..|-..++..
T Consensus 692 ~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 692 AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 455678888999999999999999999986322 222233445788888999999999999999998888777633
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.081 Score=58.53 Aligned_cols=186 Identities=18% Similarity=0.163 Sum_probs=123.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH--Hhhh-hHHhhHHH
Q 020587 88 VAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS--AYND-RMIDLLDP 164 (324)
Q Consensus 88 l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~--~L~~-~m~~~~d~ 164 (324)
++..++..--.+...|..|-+|..-|+......+...++.++-.+|.-.-.--++|-.|+-.|.. ..-. .=+| ...
T Consensus 703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~ 781 (1176)
T KOG1248|consen 703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASA 781 (1176)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHH
Confidence 33334444455556666666666666633334455555666666677777777888888888873 2211 1112 233
Q ss_pred HHHHHHHH-----hcCChHHHHHHHHHHHHHHHh----hcCh---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 165 LLVQLLLK-----SSQDKRFVCEAAEKALVAMTT----WVSP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 165 ll~~LL~K-----a~~sk~FI~e~A~~AL~amv~----~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
.+...+.. +|+....++-+ -.|+..++. .++. .+++..+..++...++.||..+..++..++..+..
T Consensus 782 ~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 782 ILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 33333332 34444444433 444444443 2333 34666678999999999999999999999999977
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
..+..+ ++.|++.+..++.|..-.+|...|.++..|-+.|+-.
T Consensus 861 ~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 861 ECLSPH-LEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 755545 9999999999999999999999999999999888743
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.81 E-value=0.012 Score=52.04 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCH
Q 020587 179 FVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLP 256 (324)
Q Consensus 179 FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~p 256 (324)
.||.-+-.++..++..-+. .+.++.|...+.+.+|.||..+..+|..++.. |- ... ...++..+..++.|.++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~---ik~-k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DM---IKV-KGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc---eee-hhhhhHHHHHHHcCCCH
Confidence 4666777777777766554 45788999999999999999999999999875 22 111 35565677778899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 020587 257 ESREAARTLLLELQSV 272 (324)
Q Consensus 257 EvR~~AR~~l~~L~~~ 272 (324)
++|..|+..+..+...
T Consensus 78 ~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 78 EIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999866665
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.74 E-value=0.042 Score=60.31 Aligned_cols=129 Identities=20% Similarity=0.163 Sum_probs=77.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHH---------------Hhhhh----HHHHHHHHccCcchHHHH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAML---------------DILGD----VIPLVVKSLKNPRSAVCK 141 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~---------------~~L~~----iv~~l~~~vksLRS~Vsk 141 (324)
.+..+...|+++||..|..|+..|.++.... ...+. ..|.. -...+++.++|..-.|-+
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRI 732 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHH
Confidence 3567777888999999999999998874321 11111 11221 124567788898999999
Q ss_pred HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHH
Q 020587 142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~ 221 (324)
.|+.+++.+- . .+.|+..+.+.+..||..+..+|..+-..- ...++.|...+++.++.||..++.
T Consensus 733 ~Av~aL~~~~----~---------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 733 EAVRALVSVD----D---------VESVAGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred HHHHHHhccc----C---------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCCHHHHHHHHH
Confidence 9999888641 0 122344455666666666666665543221 112444555556666666666666
Q ss_pred HHHhh
Q 020587 222 CFSRS 226 (324)
Q Consensus 222 ~L~~~ 226 (324)
.|..+
T Consensus 798 aLg~~ 802 (897)
T PRK13800 798 ALAEL 802 (897)
T ss_pred HHHhc
Confidence 55443
No 27
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.65 E-value=0.06 Score=48.39 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=102.9
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHH---HHHh
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI---FSAY 154 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dL---f~~L 154 (324)
|-.--|..++++|...+=--++=|.+-+..|..+ .++-+.+.+.+++..+...+..-...|...++.+++.| ....
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3445688999999987777788888888888887 77788899999999999999999999999999999999 7778
Q ss_pred hhhHHhhHHHHHHHHH----HH--hc-----CChHHHHHHHHHHHHHHHhhcChhhh
Q 020587 155 NDRMIDLLDPLLVQLL----LK--SS-----QDKRFVCEAAEKALVAMTTWVSPILL 200 (324)
Q Consensus 155 ~~~m~~~~d~ll~~LL----~K--a~-----~sk~FI~e~A~~AL~amv~~vs~~~l 200 (324)
|..+-||...+++.|= ++ .| ..++-+.+..+.+|..+-++..+.-.
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 9999999999999886 22 12 24578899999999999999887643
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.65 E-value=0.017 Score=45.75 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=80.7
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---
Q 020587 124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--- 199 (324)
Q Consensus 124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--- 199 (324)
+++.+.+.+++....+-..|+.+++.++..........++ .+++.|+.-..+.+.-++..+-.+|..++.+.+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5666777778888899999999999998764333333343 677777777778889999999999999988764321
Q ss_pred ----hHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 200 ----LLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 200 ----ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
+++.|...+.+.+..+|..++..|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4667788888889999999998888765
No 29
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.65 E-value=0.056 Score=54.71 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=102.1
Q ss_pred HhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587 88 VAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL 166 (324)
Q Consensus 88 l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll 166 (324)
++-|++ ++-..+..||..||.++.+.|..+...-.-.+-.++..-+|.--.|.+.|-.++..+...+-. ..-+..+.
T Consensus 335 ~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P--~~~I~~i~ 412 (516)
T KOG2956|consen 335 LEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP--LQCIVNIS 412 (516)
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc--hhHHHHHh
Confidence 344444 566667778888888888888888766666677788888899999999998876665544321 12244555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhh-------HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILL-------LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~l-------l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
+.++. .|..+ .-.+-+.+..|++.++-..+ .|.+..+..+-+..||..+..||..++.++|.+.+..+
T Consensus 413 ~~Ilt--~D~~~--~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 413 PLILT--ADEPR--AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred hHHhc--CcchH--HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 55555 44332 34556677778888876553 34455677899999999999999999999997656544
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=96.62 E-value=0.17 Score=54.69 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH--hh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI--DL 161 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~--~~ 161 (324)
+..+...+.+.|=.-|.-||..+-++ ..|+ .++.++..|.+.+.+...-|-|+|++|+..||......+. .+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~I--r~~~----i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~ 180 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCI--RVSS----VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF 180 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcC--CcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch
Confidence 34555555555544444444433333 1122 2345666778888999999999999999999886553321 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-------------------------------------cCh-----hh
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-------------------------------------VSP-----IL 199 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-------------------------------------vs~-----~~ 199 (324)
++. |.....|.+..|.-.|-.+|..+... .+. ..
T Consensus 181 ~~~----L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~ 256 (746)
T PTZ00429 181 KKD----LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAET 256 (746)
T ss_pred HHH----HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHH
Confidence 222 22223344444444444444444322 111 13
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
++..+.+.++|.|+.|.-.+++++..+....... +...-..++...+.. |..+.||+|+.+-+.+..+...++
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv~-L~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALLT-LSRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHHH-hhCCCccHHHHHHHHHHHHHHHCH
Confidence 5566778889999999999999888777654322 222223344444443 356889999999988877766665
No 31
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.57 E-value=0.13 Score=55.38 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587 95 DWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS 173 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka 173 (324)
.|.-+.+-+..+-.++..-. .++.+.+.+++ ..++.|.=..+-+.|..++..+...+| -.=+...+++.+|...
T Consensus 492 ~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 492 LWRVRLAILEYIPQLALQLGVEFFDEKLAELL---RTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMD 566 (759)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHh
Confidence 59999888888888876443 45555555543 344555555666677777888989999 3445677889999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhc----ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH
Q 020587 174 SQDKRFVCEAAEKALVAMTTWV----SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS 249 (324)
Q Consensus 174 ~~sk~FI~e~A~~AL~amv~~v----s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~ 249 (324)
++++--.|...-.++..++.-+ ....++|.+.....+.+|.||-.+|.+|..++..+..... -+.+.+..-.
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~ 642 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET 642 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH
Confidence 9887777777777766655544 4456888889999999999999999999999998766533 4567777777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHH
Q 020587 250 QLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 250 ~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+..|.+.++|+.|..++..+...
T Consensus 643 L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 643 LSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hccCcccchhHHHHHHHHHHHHH
Confidence 88899999999999998855543
No 32
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.079 Score=56.84 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAG-LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~-L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+...-.+ |.|.+=.+|++|++.+=+--...-+ +..+..-|++.+. .|..=.|-=|-..-..+..+.+ ..
T Consensus 19 ~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P---~~ 89 (757)
T COG5096 19 SVAALSSGRLESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP---EL 89 (757)
T ss_pred HHhhhccccccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH---HH
Confidence 44445555 7788888899999866543332222 3333344445444 3443333333222222222222 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+-..++.+++-+++.|.+||--|-++|..|=..-=-..+++-|..++.|+++.||+.++.++..+.+. +.+ +. .+
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~-l~---~~ 164 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKD-LY---HE 164 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHh-hh---hc
Confidence 55677778888999999999999988876433222233555678999999999999999999998874 232 22 23
Q ss_pred H-HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 242 K-LIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 242 ~-ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
. +......++.|.+|.|-..|-..| +.++++
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl---~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASL---AEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHH---HHhchh
Confidence 3 556667778899999987776665 455554
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.09 Score=59.52 Aligned_cols=185 Identities=19% Similarity=0.210 Sum_probs=119.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcH---------HHHHH------h---------------------------
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK---------EAMLD------I--------------------------- 120 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~---------~~l~~------~--------------------------- 120 (324)
.+++++.+|.++.|..|.-+.--|+.|...|| ++... .
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 35677777889999999999888888877543 11110 0
Q ss_pred --------hhhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCC-hHH----------H
Q 020587 121 --------LGDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQD-KRF----------V 180 (324)
Q Consensus 121 --------L~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~s-k~F----------I 180 (324)
+.-+.+.++. .+-+-=..|.|-++.|+.||.+..|+.+.||+..+++.|+.-.+.= .+. +
T Consensus 1120 ~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhh
Confidence 1111222211 2223344678899999999999999999999999999999776542 111 1
Q ss_pred HHHHHHH--------------HHHHHhhcCh---hhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 181 CEAAEKA--------------LVAMTTWVSP---ILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 181 ~e~A~~A--------------L~amv~~vs~---~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
..+|-.+ ++..+.++.. .+++|.+...++ .=+---|-.+|.++..++.|.|.+ +..+ ..+
T Consensus 1200 e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~e-mtP~-sgK 1277 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSE-MTPY-SGK 1277 (1702)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccc-cCcc-hhH
Confidence 1222222 2222333322 335555443332 233345667889999999998887 5555 789
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
++.++-.++.|.|+-+|.+=-.++..|
T Consensus 1278 ll~al~~g~~dRNesv~kafAsAmG~L 1304 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAFASAMGYL 1304 (1702)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHH
Confidence 999999999999999988765555443
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.35 E-value=0.35 Score=57.17 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=143.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-h
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-D 160 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~ 160 (324)
.+..+.+.|++++=..+.+|...|-.++..+++.... ...+.++.++..+++-...+.|+|+.+++.||......-. .
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3556666667777677888888888888777765543 2456788899999999999999999999999985543322 2
Q ss_pred hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
.++ .++++|+..+...+.-+.+.|-.||..++.+... ...++.|...+++.++.+|..++..|..++......
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 233 4788898888877788889999999988876633 235678889999999999999999999999987655
Q ss_pred chh-hc-cHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHhhhcC
Q 020587 234 GIK-EY-GIDKLIQVAASQLSDQLPESREA--ARTLLLELQSVYEKSH 277 (324)
Q Consensus 234 ~i~-~~-~~~~ll~~l~~~L~D~~pEvR~~--AR~~l~~L~~~~~~~a 277 (324)
... .+ ...-.+..+..+|+-.+.|.-.. |-..+..|-+.-+...
T Consensus 770 ~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~ 817 (2102)
T PLN03200 770 DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGAN 817 (2102)
T ss_pred HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCC
Confidence 422 22 34445666777887777777666 6666665655433333
No 35
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.33 E-value=0.34 Score=42.73 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~ 174 (324)
|+.-|..++..+=-|+..||.++.+. ++.+.+.++|.-..|=++|+.++..|.. .+|...-+.++..++....
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 45678888888889999999877654 4556788899999999999999999875 4566666777777888889
Q ss_pred CChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhc----c-----CCCHHHHHHHHHHHHhhccc
Q 020587 175 QDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYL----K-----NRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 175 ~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~----~-----hKNp~VR~~aa~~L~~~v~~ 229 (324)
|++.-|++.|..++..+...-.+.. .++.+...+ + ..+..-|.....++...+.+
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 9999999999999999888855544 333322222 2 24566677777777766664
No 36
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.30 E-value=0.043 Score=58.34 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=137.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
.+.-.|.+..=+.+..+++.+-+++...|+.+.. -.=.|+-.++..+++-+-.+=|+|..|+|.|++..|.+ .
T Consensus 887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------d 960 (1172)
T KOG0213|consen 887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------D 960 (1172)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------H
Confidence 3334445555555777888889999988876642 23345667788888888889999999999999999975 5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
++..||+-....-+-.|.-...|+..+.+.|.|-.++|.|..-...-+..|...+.+.+.-.++.+|.-+ +.+ .-.+.
T Consensus 961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems-kdY-iyav~ 1038 (1172)
T KOG0213|consen 961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS-KDY-IYAVT 1038 (1172)
T ss_pred HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh-hhH-HHHhh
Confidence 7788887765555666666677777888999999999998877778888899888888888888877642 223 55677
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 245 QVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 245 ~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+.+...|.|.++--|+.|-.++.+|.
T Consensus 1039 PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1039 PLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHh
Confidence 88888899999999999998887664
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.33 Score=53.97 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHHHHhH--cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 020587 95 DWVVVCEALNNVRRLSIF--HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK 172 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~--h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K 172 (324)
+=..+..+...|+.+... ...+....+.+|...+.+.+.+.-+..-+.+|.|+.-|++.+......++..+++-++.-
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 334455666777777655 223445667778888899999999999999999999999999988889998888888888
Q ss_pred hcCChHHHHHHHHHHHHHHH--hhcC----------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587 173 SSQDKRFVCEAAEKALVAMT--TWVS----------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI 240 (324)
Q Consensus 173 a~~sk~FI~e~A~~AL~amv--~~vs----------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~ 240 (324)
..+-+.--|..|-.+|..|. +... -...+..|..++-...+.+++..-..+..++...... +-.--+
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~-ld~~~l 825 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI-LDDETL 825 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc-ccHHHH
Confidence 88888888999999999888 3211 1235556778887888888888655556666554322 222238
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 241 DKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
..+++.+.-+|...++++|.+|-..+.++...|++.-
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999998888887654
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.06 E-value=0.14 Score=55.87 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHH----------------------------
Q 020587 95 DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIM---------------------------- 145 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~---------------------------- 145 (324)
-=..++++|-.+..+...| |+.+-+.+..+.+.+..++.++==+|+-+|+.
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 3566888888888876644 55555555545555555555554445544444
Q ss_pred ----------------------HHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc---C----
Q 020587 146 ----------------------TAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV---S---- 196 (324)
Q Consensus 146 ----------------------tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v---s---- 196 (324)
|+|.+...||+.+..++..+++.|++|.++ ..-|-.|-+|+.-|+.+. +
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~ 648 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPV 648 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhh
Confidence 445555555544455566777777777776 455666777776666543 2
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
...+++.|..++..-+-..|-.+...+..+++..+.. +.....+.++..+..++++.+--+-+.|-.++..+...++..
T Consensus 649 l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 649 LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 2335555666665555567777777777777776443 333458888999999999999999999999998888777643
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.00 E-value=0.42 Score=52.25 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=137.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
.+++++.+.|=.-|+-|.+.|..=.....--+ ...-.++++.+++.+.|-+--|.-.|..|+|-|..-.+ +.+++.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHH
Confidence 67888888777779999988764322222112 24567889999999999999999999999999996555 445666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-----------hhhHHHHhhhcc--CCCHHHHHHHHHHHHhhccccc
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-----------ILLLPKLQPYLK--NRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-----------~~ll~~L~~~~~--hKNp~VR~~aa~~L~~~v~~~g 231 (324)
++..|....-..|.-.|+-+.-+|.+|+.+++| .+++|.+..+.. .-.-.|+..++..+...+.|.|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 666666665455777888899999999999987 234444443332 3344599999999999999988
Q ss_pred ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.= +..+ ...++.++.-.+...-.-+|+-|-.++..|....+...
T Consensus 166 ~l-l~~f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l 209 (1233)
T KOG1824|consen 166 TL-LPNF-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL 209 (1233)
T ss_pred cc-Ccch-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH
Confidence 73 2233 67778888888888888889888888887776665554
No 40
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.92 E-value=0.079 Score=55.43 Aligned_cols=179 Identities=18% Similarity=0.180 Sum_probs=138.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..+...|.++.=+....++..+-.++...|+.+.. -.-.|+-.++..+++-+-.+=|+|..|+|.+.+..|+.
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----- 764 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----- 764 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-----
Confidence 344445556666666777888888888887775432 23345667888888888999999999999999999965
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
.++..||+-....-+-.|.-...|+..+.++|.|-.++|.|..-...-+..|...+.+.+.-.++.+|... +.+ .-.
T Consensus 765 -dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s-~dY-vy~ 841 (975)
T COG5181 765 -DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS-LDY-VYS 841 (975)
T ss_pred -HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH-HHH-HHH
Confidence 57777887665555666666677788888999999999988777777888888888888888888887752 234 567
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+.+.+...+.|.+|--|+.|-..+.+|.
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 8888899999999999999998887664
No 41
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.17 Score=52.42 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=139.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH----HhhhhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML----DILGDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~----~~L~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
.+..+|+++-+++|..|-..+.++.+. ++. .++++++..++. -+.++.+-.-|-+++.++...-+||.+-.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence 456678888899999999999998773 222 457777764444 556777778889999999999999999999
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~ 234 (324)
|.+.++++.+...+|..--||--|..+|.-++.-+-.. .+...++.-...--+.||. .+.++.++++-+-.+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999887765332 2334555555555555654 4688899888776665
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
-..|.++.+++.+..-+.+-+|.+|.+--.=+..
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~ 193 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV 193 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 5567899999999999999999999986554443
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.06 Score=56.61 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~ 174 (324)
||.-|.=+-..|-=|+...++.+ |.-+.+.+.+.+.+-+=.|--.++.++|.|+++.-+.|-||+..++|-|+....
T Consensus 368 dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDEL---LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 59765433334444444444433 555667777788887877888899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhc---Chhh-hHHH---HhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHH
Q 020587 175 QDKRFVCEAAEKALVAMTTWV---SPIL-LLPK---LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVA 247 (324)
Q Consensus 175 ~sk~FI~e~A~~AL~amv~~v---s~~~-ll~~---L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l 247 (324)
+.+..||.-...+|.---.++ ++.+ +.|. |...+-++|..|...++..+..+-+.-|.+ +..+ ++.+++.+
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~-l~~IL~~l 522 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPY-LEYILDQL 522 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHH-HHHHHHHH
Confidence 999999999999988655554 3322 4443 445556899999999999999998888776 4444 55555555
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 248 ASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 248 ~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
.... -+|-|+=+..|....+--|+
T Consensus 523 ~~af-------~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 523 VFAF-------GKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred HHHH-------HHHhhcceehHHHHHHHHHH
Confidence 4332 12444444445554444444
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.75 E-value=0.019 Score=40.51 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 020587 139 VCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAM 191 (324)
Q Consensus 139 Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~am 191 (324)
|=.+|+.++|.+....+..+.++.+.+++.|+..+.|++.-||..|-.||..|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 44689999999999999999999999999999999988889999999998643
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.68 E-value=0.032 Score=39.37 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHH
Q 020587 96 WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150 (324)
Q Consensus 96 W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dL 150 (324)
|..|..|+..|=+++...++.+.+.+.++++.+...++|..+.|-.+||.+++.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8889999999988888889999999999999999999999999999999988754
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.66 E-value=0.082 Score=40.16 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=63.0
Q ss_pred HHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 85 KTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 85 ~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
..+++.| ++++|..|..++..|.++ .++ ++++.+...+++....|.++|+.+++.+ | -+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--GDP--------EAIPALIELLKDEDPMVRRAAARALGRI----G------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--THH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----H------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------CH
Confidence 4677778 788999999988877744 223 3456667777999999999999999987 2 24
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHH
Q 020587 164 PLLVQLLLKSSQD-KRFVCEAAEKAL 188 (324)
Q Consensus 164 ~ll~~LL~Ka~~s-k~FI~e~A~~AL 188 (324)
..++.|.+.+.++ ..+++..|..+|
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 5677777777654 567799888887
No 46
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.42 E-value=0.74 Score=40.33 Aligned_cols=105 Identities=20% Similarity=0.141 Sum_probs=75.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcc-hHHHHHHHHHHHHHHHHhh--hh--
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPR-SAVCKTAIMTAADIFSAYN--DR-- 157 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLR-S~Vsk~A~~tl~dLf~~L~--~~-- 157 (324)
...+...|.|+++..|..|+..+.-++... ++.+...-...++.+.+.+++.. ..+-+.||.++.+||...+ .+
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 445666778999999999999999999987 78887777788888888777533 3566788999999998864 22
Q ss_pred ---HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587 158 ---MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA 190 (324)
Q Consensus 158 ---m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a 190 (324)
..|.+..+++.|++...+ ..+.+.+-.+|..
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ 140 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALAT 140 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence 246677788888777665 2333344444443
No 47
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.41 E-value=0.88 Score=44.14 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=132.6
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHHHh-HcHHH-HHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhh-h
Q 020587 83 SVKTLVAGLD-SKDWVVVCEALNNVRRLSI-FHKEA-MLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYND-R 157 (324)
Q Consensus 83 ~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~-~h~~~-l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~-~ 157 (324)
.+..++..-+ .++|.+-+..|.+|-+... .++.+ ..+.-..+...+.+++. .|=|.|=+-|+.+...+|+.+|. .
T Consensus 11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~ 90 (307)
T PF04118_consen 11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG 90 (307)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 4455555554 5699999999999999888 33322 22444556677888887 78899999999999999999873 3
Q ss_pred HHhhHH-----------------------------------------HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC
Q 020587 158 MIDLLD-----------------------------------------PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS 196 (324)
Q Consensus 158 m~~~~d-----------------------------------------~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs 196 (324)
+..++. .++..||--.-+.+.=+-+.+...|+.+...+.
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 432222 222223333333444455667777888888888
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc------cc----chhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG------VE----GIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g------~~----~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
.......++-.+- .||.+|..+..|+.+-+.+.. .. .+.......++.++..+++|.+.=|+.. ++
T Consensus 171 ~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~---~L 246 (307)
T PF04118_consen 171 DKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRG---FL 246 (307)
T ss_pred hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHH---HH
Confidence 8877777776663 788999999999999888866 11 1122257889999999999998887754 45
Q ss_pred HHHHHHhhhcC
Q 020587 267 LELQSVYEKSH 277 (324)
Q Consensus 267 ~~L~~~~~~~a 277 (324)
-.|..+|+-..
T Consensus 247 DlLl~~~PL~s 257 (307)
T PF04118_consen 247 DLLLSHFPLDS 257 (307)
T ss_pred HHHHHhCCCCC
Confidence 55567777544
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.25 Score=52.96 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=113.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL 165 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l 165 (324)
++...|+|.+=..++||++.|-.+..+..+ ...+-+.|+|.+.+=++.|-|--- +|-.-.-+.+|.+-.+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVy-----vYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVY-----VYLLRYAEEQPDLALL 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHH-----HHHHHHhhcCCCceee
Confidence 455566787778899999998888665433 334445667777777777666422 2111112333443333
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 166 LVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 166 l~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
=-.-++| .+|.|+-||..|-++|..|=-.+=.+-++-++..+..+-+|.||..+|-.+..|-.. +++ .-+.|+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e-----~k~qL~ 182 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPE-----QKDQLE 182 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Chh-----hHHHHH
Confidence 2233444 689999999999999998766654555666788999999999999999888766542 332 235899
Q ss_pred HHHHHhccCCCHHHHHHHHHHH
Q 020587 245 QVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 245 ~~l~~~L~D~~pEvR~~AR~~l 266 (324)
+.+.++|.|.+|-|--.|--+|
T Consensus 183 e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 183 EVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHHHHHhcCCCCcchhHHHHHH
Confidence 9999999999998877766554
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=1.7 Score=46.71 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=124.6
Q ss_pred HHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 82 TSVKTLVAGLDSKD-WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 82 ~~L~~~l~~L~s~d-W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
..|.-++..+++++ =....+|+--+-.++.+-..-+...++.+.+-+..-++| --.+||-.|+-.+|||+++|+.+|.
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~ 675 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL 675 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555555521 123455665566665544444456778888888888855 6799999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHhhcChhh-hHHHHhhhcc---CCC--------HHHHHHHH
Q 020587 160 DLLDPLLVQLLLKSSQDK-------RFVCEAAEKALVAMTTWVSPIL-LLPKLQPYLK---NRN--------PRIRAKAS 220 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~sk-------~FI~e~A~~AL~amv~~vs~~~-ll~~L~~~~~---hKN--------p~VR~~aa 220 (324)
||.|.++..|++..++.+ .++.-=++-||..=-.--++-. +++.|+.... .++ -.+|..+.
T Consensus 676 py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l 755 (859)
T KOG1241|consen 676 PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGIL 755 (859)
T ss_pred hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence 999999999999987642 2444445555443222223333 5556654442 221 36888888
Q ss_pred HHHHhhccccccc---chhhccHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhc
Q 020587 221 MCFSRSVPRLGVE---GIKEYGIDKLIQVAASQLSDQLP--ESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 221 ~~L~~~v~~~g~~---~i~~~~~~~ll~~l~~~L~D~~p--EvR~~AR~~l~~L~~~~~~~ 276 (324)
.....++.-++.+ .+..--++.++..+.+--.|..- -+-..|-.++.-|-..||+.
T Consensus 756 eay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 756 EAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 8888777766632 11111267777777666665553 34445566677777777743
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.2 Score=48.45 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=139.5
Q ss_pred HHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhHc-HHHHHH-hhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhh
Q 020587 82 TSVKTLVAGLDSK-DWVVVCEALNNVRRLSIFH-KEAMLD-ILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 82 ~~L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h-~~~l~~-~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
..+++++.+|..+ |=..+++||..|=.+.... .+.+.+ .+..+++.+++.++ .-+--+--.||.|+..||..|.+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3578999999876 8889999999998876544 444442 35667777777665 244677789999999999999988
Q ss_pred HHhhHH-HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHH-----HhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587 158 MIDLLD-PLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPK-----LQPYLKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 158 m~~~~d-~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~-----L~~~~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
..--++ ..+|+|+.|...= =-=|+|.+-.||. ++...+|..+|.. ...|+.=-+.-+.+.+.....+|+..+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE-~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALE-KISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHH-HHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 876665 5788888887541 1124444444554 3455677777762 346666677888888988999999998
Q ss_pred cccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcC
Q 020587 231 GVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKL 301 (324)
Q Consensus 231 g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l 301 (324)
.++... + .-..++.+..+|+-.+-..-+++--++..+...|.+ ..++.+..|..-|
T Consensus 326 ~sd~f~-~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-------------~~~kLdql~s~dL 381 (1051)
T KOG0168|consen 326 RSDEFH-F-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-------------GPDKLDQLCSHDL 381 (1051)
T ss_pred CCccch-H-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-------------ChHHHHHHhchhH
Confidence 877332 2 344567777777766666666665555544443332 3467777776555
No 51
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.12 E-value=0.1 Score=44.99 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=70.1
Q ss_pred cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHh
Q 020587 195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVY 273 (324)
Q Consensus 195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~ 273 (324)
..+..++..|..-++|+||.|...+..+|..|+++-|..-..+..-..+++.+.+++.+ .+++||+-...++......|
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 35556888888888999999999999999999999988744445678888999999999 89999999999998888888
Q ss_pred hhcC
Q 020587 274 EKSH 277 (324)
Q Consensus 274 ~~~a 277 (324)
....
T Consensus 113 ~~~~ 116 (144)
T cd03568 113 KNDP 116 (144)
T ss_pred CCCc
Confidence 7433
No 52
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.72 E-value=1 Score=50.61 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHH---HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH---HHHHHHH
Q 020587 97 VVVCEALNNVRRLSIFHKEAMLDILGDVIPLV---VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD---PLLVQLL 170 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l---~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d---~ll~~LL 170 (324)
-+|..|...|.-|+++....+...+..+-..+ +...-+..+ -...-=+.|.++-..|..++. ..++.|+
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-----~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~ 822 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-----EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLF 822 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-----chhhhHHHHHHHHHhhhhhhhhhhhhhhHHH
Confidence 34777888888888877555554333332322 222223342 222222444444444444443 4555666
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHH
Q 020587 171 LKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVA 247 (324)
Q Consensus 171 ~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l 247 (324)
.-....-..+|-++.+|+..|....+-.. ++..+.+-++.-...+|+..+.++..++..++..++..+ ...++.-+
T Consensus 823 ~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~-~~Llv~pl 901 (1549)
T KOG0392|consen 823 FFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPY-NPLLVVPL 901 (1549)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccc-ceeehhhh
Confidence 65556678899999999999998877655 444566666777778999999999999999888777766 67788888
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCC-CcchhHHHHHHHhcCChhhHH
Q 020587 248 ASQLSDQLPESREAARTLLLELQSVYEKSHDSAPAT--VSD-SPEMDSWENFCQSKLSPLSAQ 307 (324)
Q Consensus 248 ~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~--~~~-~~~~~~w~~~~~~~l~~~~~~ 307 (324)
...++|..-.+|++|-+.+..+....+-.+-.++.+ +++ -...++-..|.+.-|.|...-
T Consensus 902 lr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski~ 964 (1549)
T KOG0392|consen 902 LRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKIP 964 (1549)
T ss_pred hcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccCC
Confidence 889999999999999999999998888777543321 111 123467777888888776543
No 53
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.57 Score=48.36 Aligned_cols=196 Identities=19% Similarity=0.117 Sum_probs=125.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..|..++..|.+.|=+...+|+..|+.|+.+-++.+.-.+ -.+++.++..+...--.|.--|+.++|-+..+-.....-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 3444445555566666666666666666655454443322 346788888888777777788999999876665444333
Q ss_pred hHH-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcC-------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 161 LLD-PLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVS-------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs-------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
-++ ..++.|..... ..+..|+.+|..++--|+.... ..-++|.|...+++---.+|.+++-.+.++...-.
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 333 35666666666 4477799999999988766433 23477777777777668899999999998887633
Q ss_pred ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.+.+.-.--.-+++.+..+|...+...=..+..++..+.++.+...
T Consensus 397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 3322211122277778888866666665555555555555555444
No 54
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.59 E-value=3.2 Score=40.19 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=97.0
Q ss_pred hhhhHHHHHHHHccCcc-hHHHHHHHH-HHHHHHHHhhhhHHhhHH--HHHHHH----HHHhcCC--------hHHHHHH
Q 020587 120 ILGDVIPLVVKSLKNPR-SAVCKTAIM-TAADIFSAYNDRMIDLLD--PLLVQL----LLKSSQD--------KRFVCEA 183 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLR-S~Vsk~A~~-tl~dLf~~L~~~m~~~~d--~ll~~L----L~Ka~~s--------k~FI~e~ 183 (324)
.+..+.+.+.+.+++-. +.-+|.+|. |++-+....+...+...+ .++..+ ..+.... ..-|..+
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 34556667777777654 444666766 777666655555433221 333322 2332221 2456677
Q ss_pred HHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc--chhhccHHHHHHHHHHhccCC
Q 020587 184 AEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE--GIKEYGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 184 A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~--~i~~~~~~~ll~~l~~~L~D~ 254 (324)
|-.+-..++..+++.+ .+|.|...+.+.+..||..+.+.|.-+.+..... .....+.+.+++.+..+..|+
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 7777777777777722 4566788889999999999999999998875532 122236899999999999997
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q 020587 255 LPESREAARTLLLELQSVYE 274 (324)
Q Consensus 255 ~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+..+|+=-...+..|.
T Consensus 286 ---~K~~sKkdrk~qRs~Fr 302 (309)
T PF05004_consen 286 ---SKSRSKKDRKQQRSSFR 302 (309)
T ss_pred ---cCccchhHHHHHHHHHH
Confidence 34455555555555554
No 55
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.47 E-value=0.078 Score=33.41 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
|++.+.++++|.+++||++|-.++..+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999876553
No 56
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.34 E-value=0.46 Score=40.12 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=65.0
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD---QLPESREAARTLLLELQSV 272 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D---~~pEvR~~AR~~l~~L~~~ 272 (324)
.+...+..|..-++|+||.+...+...|..|+++-|..-........++..+.+++.. .+++||.-...++......
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5566888899999999999999999999999999887643444444555557777776 4889999999999888888
Q ss_pred hhhc
Q 020587 273 YEKS 276 (324)
Q Consensus 273 ~~~~ 276 (324)
|+..
T Consensus 114 f~~~ 117 (133)
T cd03561 114 FGGH 117 (133)
T ss_pred hcCC
Confidence 8754
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.21 E-value=2.8 Score=43.21 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=122.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH-HH
Q 020587 87 LVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL-DP 164 (324)
Q Consensus 87 ~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~-d~ 164 (324)
+|..|.+.+=+....+...|+++... .|..+ +.++...+...+.+....|-+.+|..++.+...-.....-.. ..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 56666666555556666667776553 34444 556667778888889999999999887777644322222111 45
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-h-----HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-L-----LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-l-----l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
+++.++...++.+.-|++.|..+|..+..+-.... + +..|...+.+.|..+|..+..++..+...- .+ ....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~-~~~~ 197 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PE-AAEA 197 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HH-HHHH
Confidence 78888888999999999999999999987644333 4 456777777779999999888887776542 21 2221
Q ss_pred -cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 239 -GIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 239 -~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
.-.-+++.+.+.+.+.+.=+|..+-.++..|-.
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 112266777777777777788777777665544
No 58
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.05 E-value=4.6 Score=41.61 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~ 161 (324)
.+...++.|..+ ..+++.|..++.-....+ ++. .+..-+ +...+.+-.....-.+|.++..++..+. ...
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~-~l~-~~~~~~--lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--- 74 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSP-FLE-RLPEPV--LFDCLNTSNREQVELICDILKRLLSALSPDSL--- 74 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhh-HHH-hchHHH--HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---
Confidence 344555566555 456777777766444333 111 111111 4444444444555678888888888763 333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc-------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV-------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v-------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~ 234 (324)
...+.+.|..-....+..|+.-+-.+|..++.+- ....+++.|..++.+.+..|...++..|..+...- .+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hh
Confidence 3444444444445567788888888877665443 44668889999999999999999999999888742 11
Q ss_pred hhhccHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 235 IKEYGIDKL-----IQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 235 i~~~~~~~l-----l~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.+.+ ...+..++.-.+..+|...-.++..+
T Consensus 153 -----~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 153 -----LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred -----HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2223 66677777666888886555544433
No 59
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.04 E-value=1.8 Score=46.06 Aligned_cols=144 Identities=11% Similarity=0.126 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587 160 DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
+|--.+++.|++..+..-+-||----.=++.-+.+.+++ +++|.+..|+.+.|+.+|..|..++..++..++.+.+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 345568899999998888899988888888888888754 4788999999999999999999999999988876522
Q ss_pred hh-----c----c-------------------------HHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020587 236 KE-----Y----G-------------------------IDKLIQ-VAASQLSDQLPESREAARTLLLELQSVYEKSHDSA 280 (324)
Q Consensus 236 ~~-----~----~-------------------------~~~ll~-~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~ 280 (324)
-. + . +..++. +-.+.+.|..+-+|.++-..++...+.|+...-+.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~ 485 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVAN 485 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhh
Confidence 10 0 0 111111 22335667888888888888888888887665422
Q ss_pred CCC---------CCC---CcchhHHHHHHHhcCCh
Q 020587 281 PAT---------VSD---SPEMDSWENFCQSKLSP 303 (324)
Q Consensus 281 ~~~---------~~~---~~~~~~w~~~~~~~l~~ 303 (324)
..- ++. +.....|..|..+...-
T Consensus 486 kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 486 KILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 111 111 23457888888776544
No 60
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.83 E-value=0.37 Score=41.03 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=64.2
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPE----SREAARTLLLELQS 271 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pE----vR~~AR~~l~~L~~ 271 (324)
.+..++..|...++|+||.+...+..+|..|+++-|..-....+...+++.+.+++.+.... ||+....++.....
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34457788999999999999999999999999998887444556677888888877765432 89999988888888
Q ss_pred Hhhh
Q 020587 272 VYEK 275 (324)
Q Consensus 272 ~~~~ 275 (324)
.|+.
T Consensus 119 ~f~~ 122 (140)
T PF00790_consen 119 AFKS 122 (140)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 8843
No 61
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.69 E-value=0.93 Score=45.03 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred CHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHH-----ccCcchHHHHHHHHHHHHHHH
Q 020587 79 DIDTSVKTLVAGLDSKDWV-VVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKS-----LKNPRSAVCKTAIMTAADIFS 152 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~-~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~-----vksLRS~Vsk~A~~tl~dLf~ 152 (324)
||.+-+..- ++..|+. .|..|.+.||.|+.+.++.+.+.+...+..++.. -.|.|+. -.|+..++.|..
T Consensus 210 dP~EYIrrd---~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~K--D~Al~Li~ala~ 284 (370)
T PF08506_consen 210 DPEEYIRRD---LEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSK--DGALYLIGALAS 284 (370)
T ss_dssp SHHHHHHHH---SCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHH--HHHHHHHHHHHB
T ss_pred CHHHHHHhh---ccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHH--HHHHHHHHHHHh
Confidence 555544443 3334554 5889999999999987777766666666555542 2344433 235655566554
Q ss_pred Hhhh------------hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHH
Q 020587 153 AYND------------RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRA 217 (324)
Q Consensus 153 ~L~~------------~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~ 217 (324)
.... .+.+++...+.+-|.-..+...+++.+|-+.+...-...+... ++|.+..++++.+..|+.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhh
Confidence 4421 3466666554444443445678999999998888777777765 556788999999999999
Q ss_pred HHHHHH
Q 020587 218 KASMCF 223 (324)
Q Consensus 218 ~aa~~L 223 (324)
++|.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 999875
No 62
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.9 Score=46.50 Aligned_cols=183 Identities=18% Similarity=0.141 Sum_probs=128.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH--HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML--DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~--~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
..+.++.....+..|+.++.....+-.+. .|..+. +.++.+...+....+++-..+-..||.+++.++........
T Consensus 217 ~il~q~~ss~ts~~~~~ritd~Af~ael~--~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~ 294 (533)
T KOG2032|consen 217 KILAQLLSSITSEKENGRITDIAFFAELK--RPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR 294 (533)
T ss_pred HHHhhcccccchhcccchHHHHHHHHHHh--CcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH
Confidence 34555555556778999998887776663 344555 67889998999999999999999999999999999877777
Q ss_pred hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhh----HHH---HhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILL----LPK---LQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~l----l~~---L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
.|...++..++.-..|. +.=|.-++-.+|.-+....+.-.+ ++. +.+...+-++++|..+-.++..+..--|
T Consensus 295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 77766666666666543 456666777777777776665443 332 3466678999999999888887777554
Q ss_pred ccchhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHH
Q 020587 232 VEGIKEYGIDKLIQVAASQ---LSDQLPESREAARTLLL 267 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~---L~D~~pEvR~~AR~~l~ 267 (324)
-. -+.+..+.+.+..+.+ |+|.+|-+=.+-|-.+.
T Consensus 375 ~~-~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 375 GG-WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred CC-chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 44 2223245454444444 48999976666665554
No 63
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=2.2 Score=45.91 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=79.5
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC----ChHHHH---HHHHHHHHHHH
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ----DKRFVC---EAAEKALVAMT 192 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~----sk~FI~---e~A~~AL~amv 192 (324)
.++.+++.|..++.-..|-|=|+|+.|+..+|+. ..+|-|+...++...|..=.| .|.|+. .+=++||+...
T Consensus 131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence 4677888999999999999999999999999998 678889999999988876544 266764 23455665554
Q ss_pred hhc---C-hhhhHH----HHhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587 193 TWV---S-PILLLP----KLQPYLKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 193 ~~v---s-~~~ll~----~L~~~~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
.++ + -...+. .+..-.-|+||.-|+.--+|+..++.--
T Consensus 210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST 255 (948)
T ss_pred hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC
Confidence 443 2 122333 2334444788888888888888888765
No 64
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=5.5 Score=42.94 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHH-HHHHHHccCcchHHHHHHHHHHH-------HHHHHhhhhHHhhHH-
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVI-PLVVKSLKNPRSAVCKTAIMTAA-------DIFSAYNDRMIDLLD- 163 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv-~~l~~~vksLRS~Vsk~A~~tl~-------dLf~~L~~~m~~~~d- 163 (324)
++|=+-+..|+.-|-+|..-..+++.+.+.+-+ ..-++.|+|-.=.|+-.|+..=+ ||+..++...+...+
T Consensus 228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p 307 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP 307 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 567778888888888888777899998888844 44578999999999999887666 444445655554444
Q ss_pred -----------HHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHHHHHHHHHH
Q 020587 164 -----------PLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPRIRAKASMC 222 (324)
Q Consensus 164 -----------~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~ 222 (324)
.++|.||..... +.=-++.+|..||.-..+.|.. ..++|-+-...++-+.+=|..++..
T Consensus 308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 677777766421 2346889999999887777643 2355566667777777777777777
Q ss_pred HHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 223 FSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 223 L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+-.+++--....+... ....++.+-.++.|++--+|..+--.|..+-.+.+
T Consensus 388 FGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred HHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 7766664333333322 56667777888889999999776655554443333
No 65
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.42 E-value=0.63 Score=37.15 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
..++.++..|.++.=--|-.||..||+|...+. .-...++.+...+...+++.=|-|=-+|+.+++.|+..+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 567889999999988899999999999988766 222357778888899999999999999999999999888764
No 66
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.29 E-value=6.1 Score=44.45 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-cCh-----------hhhHHH
Q 020587 136 RSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-VSP-----------ILLLPK 203 (324)
Q Consensus 136 RS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-vs~-----------~~ll~~ 203 (324)
++++.+.=-..+.+|...+.+-|-+++..+++ || ....-++|-+.-.++.-++.+ .+. ..++..
T Consensus 288 d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~-ll---d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~ 363 (1251)
T KOG0414|consen 288 DCAGPKIVGNFLVELSERVPKLMLRQLTLLVD-LL---DSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLEL 363 (1251)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHHHHHHH-hc---CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 66777777777888888877777777776666 22 222344444444443333322 221 136667
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020587 204 LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPAT 283 (324)
Q Consensus 204 L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~ 283 (324)
|...+..-|+-||.++...+.+++++.... ..-...++.-+..-+.|++.=||++|-+++..|....|....
T Consensus 364 l~erl~Dvsa~vRskVLqv~~~l~~~~s~p---~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~----- 435 (1251)
T KOG0414|consen 364 LRERLLDVSAYVRSKVLQVFRRLFQQHSIP---LGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSE----- 435 (1251)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHccCCC---ccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhh-----
Confidence 888888999999999999999988874332 223677888888899999999999999999888777665442
Q ss_pred CCCCcchhHHHHHHHh
Q 020587 284 VSDSPEMDSWENFCQS 299 (324)
Q Consensus 284 ~~~~~~~~~w~~~~~~ 299 (324)
-..+.-..+||.+.|.
T Consensus 436 ~~~~~~~~~~E~~~~~ 451 (1251)
T KOG0414|consen 436 LRSDDLRAKLEKELQK 451 (1251)
T ss_pred hcchhhhhhHHHHHHh
Confidence 1123345678887764
No 67
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.15 E-value=5.1 Score=38.27 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=34.5
Q ss_pred cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
+.....++.+..++.+....||..++..|..+.... ..+...+.+.++|.+.++|..+-..+
T Consensus 176 ~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 176 LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666666677776666655544432 23444455555566666655554443
No 68
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.06 E-value=0.47 Score=40.75 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=62.6
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ 270 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~ 270 (324)
+...+..|..-++|+||.+.-.+..+|..|+++-|..--.......++..+.+++.+ ..++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 344677788889999999999999999999999988744444566777777777754 57899999999998777
Q ss_pred HHhh
Q 020587 271 SVYE 274 (324)
Q Consensus 271 ~~~~ 274 (324)
..|+
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 7776
No 69
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.98 E-value=0.13 Score=32.35 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=22.2
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
++|.|...+++.++.||..++.+|..+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777888888888888888888877654
No 70
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.88 E-value=0.57 Score=40.28 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=66.1
Q ss_pred cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 020587 195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pEvR~~AR~~l~~L~~~~ 273 (324)
..+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+++. ...++||+-...++......|
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4556688889999999999999999999999999988864444456777777777776 567899999999988877777
Q ss_pred hhc
Q 020587 274 EKS 276 (324)
Q Consensus 274 ~~~ 276 (324)
...
T Consensus 117 ~~~ 119 (142)
T cd03569 117 RNK 119 (142)
T ss_pred CCC
Confidence 644
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.86 E-value=2.7 Score=44.19 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-------H------------------------hhhh---HHHHHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-------D------------------------ILGD---VIPLVV 129 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-------~------------------------~L~~---iv~~l~ 129 (324)
+..+-.-|.+..-..|+.|+..|-+|+...|+.+. . .+.. .++..+
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv 384 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFV 384 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 33344445677888899999999998875443211 0 0111 112222
Q ss_pred HHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCC-hH-----------HHHHHHHHHHHHHHh---h
Q 020587 130 KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQD-KR-----------FVCEAAEKALVAMTT---W 194 (324)
Q Consensus 130 ~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~s-k~-----------FI~e~A~~AL~amv~---~ 194 (324)
--|.|-=-.++-.|+.+++-+|..-+ +.+++-+...|+++-|-. |+ |+-+.-++||...|. -
T Consensus 385 hD~SD~FKiI~ida~rsLsl~Fp~k~---~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIED 461 (898)
T COG5240 385 HDMSDGFKIIAIDALRSLSLLFPSKK---LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIED 461 (898)
T ss_pred HhhccCceEEeHHHHHHHHhhCcHHH---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhh
Confidence 22222222333445544444444333 444444555555443321 32 332334455554444 4
Q ss_pred cChhhhHHHHh-----hhccCC----------------CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC
Q 020587 195 VSPILLLPKLQ-----PYLKNR----------------NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD 253 (324)
Q Consensus 195 vs~~~ll~~L~-----~~~~hK----------------Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D 253 (324)
|..+++.-.|. .+-+.+ |.-||+.+..+|...--..... +.-+.+..++.++++|
T Consensus 462 cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----~~~~sv~~~lkRclnD 537 (898)
T COG5240 462 CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----VSPQSVENALKRCLND 537 (898)
T ss_pred cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----ccHHHHHHHHHHHhhc
Confidence 55555333222 222333 3456666666665543332221 2357788889999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 020587 254 QLPESREAARTLLLELQ 270 (324)
Q Consensus 254 ~~pEvR~~AR~~l~~L~ 270 (324)
++-|+|+.|--++..++
T Consensus 538 ~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 538 QDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 99999999998887665
No 72
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.53 E-value=12 Score=44.52 Aligned_cols=211 Identities=13% Similarity=0.156 Sum_probs=124.8
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHc--HHHHH-H-hhhhHHHHHHHHccCcch-HHHHHHHHHHHHHHHHhhhh
Q 020587 84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFH--KEAML-D-ILGDVIPLVVKSLKNPRS-AVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h--~~~l~-~-~L~~iv~~l~~~vksLRS-~Vsk~A~~tl~dLf~~L~~~ 157 (324)
+...|...... +=..++.|++.||+|+... .+.+. - .-++++..+.-.|++.++ .|-...+.|+..|....+..
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 44444444333 5456889999999998742 11111 1 112344434333333333 67777888999998888877
Q ss_pred HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh----cC------hhhhHHHHhhhccCC-CHHHHHHHHHHHHhh
Q 020587 158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW----VS------PILLLPKLQPYLKNR-NPRIRAKASMCFSRS 226 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~----vs------~~~ll~~L~~~~~hK-Np~VR~~aa~~L~~~ 226 (324)
+..--..++..|-.-+.+...-+.+-|=.++..|+.. ++ ...++..|....+.+ +..+=-.+..+|-.|
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 7766666666665555666666666677777766543 22 123555565565544 333333444444433
Q ss_pred cccccc--------------------------cc---hhhc-----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 227 VPRLGV--------------------------EG---IKEY-----GIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 227 v~~~g~--------------------------~~---i~~~-----~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
...+-. +. +... .-=.++..+.....|..+|||..|-..|......
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 221100 00 0000 0123455666678899999999999988766677
Q ss_pred hhhcCCCCCCCCCCCcchhHHHHHHHhcCChhh
Q 020587 273 YEKSHDSAPATVSDSPEMDSWENFCQSKLSPLS 305 (324)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 305 (324)
||+.- .++-|+..|..-|-|+-
T Consensus 1378 yG~~F-----------s~~~W~~if~~VLFPIF 1399 (1780)
T PLN03076 1378 HGHLF-----------SLPLWERVFESVLFPIF 1399 (1780)
T ss_pred hhccC-----------CHHHHHHHHHHHHHHHH
Confidence 77665 58999999998888873
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.36 E-value=4.4 Score=38.65 Aligned_cols=155 Identities=22% Similarity=0.192 Sum_probs=101.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.....++..+.+++|..|..+...+..+ -..+.++.+...+.+....|-..|..+++++ .+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~~-- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-------GD-- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------CC--
Confidence 4667788888888998888777652222 2345567777888888888888887644443 22
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHH------------HHHHHHHHHhhcc
Q 020587 162 LDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRI------------RAKASMCFSRSVP 228 (324)
Q Consensus 162 ~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~V------------R~~aa~~L~~~v~ 228 (324)
+..++.|+.... +.+.++|..+..+|..+-. .+.+..|...+++.+..+ |..+..-
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~------ 172 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGD----ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA------ 172 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH------
Confidence 333444444444 7899999999999987443 333555555555555333 2222222
Q ss_pred cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+...+.+...+.+..++.|....+|..|...+..+...
T Consensus 173 ------l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 173 ------LGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred ------HHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 11235667778888899999999999999988754433
No 74
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.31 E-value=1 Score=49.11 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=86.4
Q ss_pred HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHH
Q 020587 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDK---RFVCEAAEKALVAM 191 (324)
Q Consensus 115 ~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk---~FI~e~A~~AL~am 191 (324)
+.+.+.+..+.+.+++.+.=+--.|--.+..|+..+..-.+.-+..|++.++|.||.-..+-+ ..||+.|-.+|.++
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL 980 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNAL 980 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 455688999999999987743333334456888888888889999999999999999876543 79999999999999
Q ss_pred HhhcChhh-------hHHHHhhhccCCCHHHHHHHHHH
Q 020587 192 TTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMC 222 (324)
Q Consensus 192 v~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~ 222 (324)
.+..++.. ++..|.+.+.||--.||..++.+
T Consensus 981 ~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 981 TRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 99666644 55678899999999999998654
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.23 E-value=0.64 Score=50.70 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=94.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcc--hHHHH-HHHHHHHHHHHHhh-hh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR--SAVCK-TAIMTAADIFSAYN-DR 157 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLR--S~Vsk-~A~~tl~dLf~~L~-~~ 157 (324)
..+.-+++.|+=.|=..|+.+++.+.-+..-|+.++...+..+++.++..-++.. +.|+| .|++|+.-|.+.+. +.
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 3455778888988999999999999999888888888899999988877666555 46666 58899999998765 78
Q ss_pred HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 020587 158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT 193 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~ 193 (324)
+.+|-+.++.+|.+-..|.|+.||++|-+|=..+..
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 899999999999999999999999999988665443
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.12 E-value=2.5 Score=42.64 Aligned_cols=116 Identities=18% Similarity=0.005 Sum_probs=70.7
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKL 204 (324)
Q Consensus 125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L 204 (324)
+..++..+.+....|..++...++.+ -++ ...+.|+....+...|++..+-.++.... .- ..+.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~---~a~~~L~~~L~~~~p~vR~aal~al~~r~-~~----~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-------GGR---QAEPWLEPLLAASEPPGRAIGLAALGAHR-HD----PGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-------Cch---HHHHHHHHHhcCCChHHHHHHHHHHHhhc-cC----hHHHH
Confidence 56667777777766766666444432 222 33444445556667788877765555422 11 23345
Q ss_pred hhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 205 QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 205 ~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
...++|.++.||+.++..|-.+-. ...++.+...+.|.+++||..|-..+.
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555668888898888887754322 112233446689999999999887764
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.04 E-value=1.6 Score=47.04 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHccCcchHHHH-HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587 121 LGDVIPLVVKSLKNPRSAVCK-TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL 199 (324)
Q Consensus 121 L~~iv~~l~~~vksLRS~Vsk-~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ 199 (324)
++.+.+.+...++|-+|-=+| +++.+++.|+..+|...-||+..++..+=+-..|..+|||..+..||.+..+..+|-.
T Consensus 509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg 588 (1172)
T KOG0213|consen 509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG 588 (1172)
T ss_pred cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc
Confidence 345666666667777676665 5677899999999999999999999999999999999999999999999999998854
Q ss_pred ------hHHHHhhhcc-CCCHH
Q 020587 200 ------LLPKLQPYLK-NRNPR 214 (324)
Q Consensus 200 ------ll~~L~~~~~-hKNp~ 214 (324)
++.-|+.+.+ |+...
T Consensus 589 ie~fDsVlkpLwkgir~hrgk~ 610 (1172)
T KOG0213|consen 589 IEQFDSVLKPLWKGIRQHRGKE 610 (1172)
T ss_pred hHHHHHHHHHHHHHHHHccChH
Confidence 4555777764 66543
No 78
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.02 E-value=2.1 Score=40.79 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhhhHHh--hHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHh--hcChhhhHHHHhhhccCCCHHHHHHH
Q 020587 145 MTAADIFSAYNDRMID--LLDPLLVQLLLKS-SQDKRFVCEAAEKALVAMTT--WVSPILLLPKLQPYLKNRNPRIRAKA 219 (324)
Q Consensus 145 ~tl~dLf~~L~~~m~~--~~d~ll~~LL~Ka-~~sk~FI~e~A~~AL~amv~--~vs~~~ll~~L~~~~~hKNp~VR~~a 219 (324)
..++.|.+.....+.+ .++.++..|+..+ .....-||+.|-+||...+- .-....-++.+...++.-...||..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455666666656665 4558888888775 44567999999999875443 32334456666666666689999999
Q ss_pred HHHHHhhcccccccchhhc-------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 220 SMCFSRSVPRLGVEGIKEY-------GIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 220 a~~L~~~v~~~g~~~i~~~-------~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.+.+..++-..|...+... +...+++.+.+++.+.++++|..|-..+..|.
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999888744433 25789999999999999999999999998654
No 79
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=5.7 Score=41.16 Aligned_cols=186 Identities=17% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHh--HcHHHHHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSI--FHKEAMLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~--~h~~~l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
....+..+.|.|=+.++++...+|++.. .||.+-...-..+++.++..++ +-.-.+--+|.=++..|+..--..-.-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4566777788999999999999999865 3343332222356677777775 444566778888888888765544444
Q ss_pred hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--hH-----HHHhhhccCCC-HHHHHHHHHHHHhhccccc
Q 020587 161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--LL-----PKLQPYLKNRN-PRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--ll-----~~L~~~~~hKN-p~VR~~aa~~L~~~v~~~g 231 (324)
.++ ..++.|+........-|+|.|-.||.-+.-..+.-| ++ +-|...+.... -...+.+.-.|.+++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 443 466677777888899999999999998776665544 22 22333333322 3577777778888887543
Q ss_pred ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+..-. -.+..+++++..+|...+++|..-|--++..|.
T Consensus 228 P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 228 PSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred CCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 32111 248899999999999999999976655554443
No 80
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=3.4 Score=41.36 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=94.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~ 160 (324)
..+++++.+++..+=+.|-+||..++.+...||+.+...+-.++..+...+.|--+.|-....+++..+....+ ..+.|
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 46889999999999999999999999999999999999999999999998888777777777766666444443 33577
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL 199 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ 199 (324)
++..+++-+..-+-....-|++++...|...+..++|.=
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 877777777766666677888888888888888886644
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.76 E-value=1.8 Score=39.03 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHH-------HhhhccCCCHHHHHHHHHHHHhh---ccccc
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPK-------LQPYLKNRNPRIRAKASMCFSRS---VPRLG 231 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~-------L~~~~~hKNp~VR~~aa~~L~~~---v~~~g 231 (324)
++.+++.++.=+.++..-.+--|......|+++....+++|. |..++.+||+.|...+..+|..+ -+.+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567888888888887666666777788888888777776652 44888999999999999998888 44555
Q ss_pred ccchhhccHHHHHHHHHHhccC-----------CCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 232 VEGIKEYGIDKLIQVAASQLSD-----------QLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D-----------~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
.. +..+ ...|++.+..|.+. .....++....++..|.+..+++|+
T Consensus 116 ~a-LvPy-yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 116 EA-LVPY-YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HH-HHHH-HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 43 5555 67778877754443 3467778888888888888877664
No 82
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.76 E-value=5.6 Score=37.65 Aligned_cols=159 Identities=11% Similarity=0.184 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc---CcchHHHHHHHHHHHHHHHHhhhh
Q 020587 83 SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK---NPRSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 83 ~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk---sLRS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
.++.++....-. -=..|...++.+..|..+|.+.+...=.+++..++..+. |+|- ++-+=+|+..+...
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRn------Ll~~F~l~~~i~~~ 154 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRN------LLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHh
Confidence 444555444322 233477777777777777776664433445666666554 7873 23333444444333
Q ss_pred H--HhhHHHHHHHHH-------H-HhcCChHHHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 158 M--IDLLDPLLVQLL-------L-KSSQDKRFVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 158 m--~~~~d~ll~~LL-------~-Ka~~sk~FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
+ .++.+.+...+. . ..++...+-+++-..+|...+.+.+. ..++|.|..-+.+-++.++.-+...|..
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3 344555555553 2 23455678889999998887765433 3488999999988899999999999999
Q ss_pred hcccccccchhhccHHHHHHHHH
Q 020587 226 SVPRLGVEGIKEYGIDKLIQVAA 248 (324)
Q Consensus 226 ~v~~~g~~~i~~~~~~~ll~~l~ 248 (324)
|++..|...+..+ ...+-.++.
T Consensus 235 c~~~y~~~~~~~~-~~~iw~~lk 256 (262)
T PF14500_consen 235 CIENYGADSLSPH-WSTIWNALK 256 (262)
T ss_pred HHHHCCHHHHHHH-HHHHHHHHH
Confidence 9999998766655 455554443
No 83
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=16 Score=40.11 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhh
Q 020587 78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYND 156 (324)
Q Consensus 78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~ 156 (324)
..++..++-+++.|.++|=-.-..+++-+-.|+.-.|+-+.+.+-+-...-.+.. -+-|=.|- ..+..+...+|.
T Consensus 764 ~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVG----Eai~k~~qa~Ge 839 (982)
T KOG4653|consen 764 IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVG----EAILKVAQALGE 839 (982)
T ss_pred hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHH----HHHHHHHHHhcc
Confidence 3455566677777777776666666666667766566655444433322222211 13333333 445566777787
Q ss_pred hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC------hhhhHHHHh-hhccCCCHHHHHHHHHHHHhhccc
Q 020587 157 RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS------PILLLPKLQ-PYLKNRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs------~~~ll~~L~-~~~~hKNp~VR~~aa~~L~~~v~~ 229 (324)
-+..|.+.++...|.-.-+.-...|..+-..|.-.++-.. -..++..|. -.-...++.||+.++..+..++.-
T Consensus 840 l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 840 LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 7788888888888877766545556777777776666554 122444333 334589999999999999999998
Q ss_pred ccccchhhccHH---HHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 230 LGVEGIKEYGID---KLIQVAASQL-SDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 230 ~g~~~i~~~~~~---~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
+|.. +...-+. -+...+...+ .+..-.+|.+|..++..+..+....-|
T Consensus 920 tg~d-lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~ 971 (982)
T KOG4653|consen 920 TGED-LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDD 971 (982)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 8754 3222111 1122222222 466677999999999988888875554
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=0.63 Score=49.99 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=65.6
Q ss_pred HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhh
Q 020587 129 VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPY 207 (324)
Q Consensus 129 ~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~ 207 (324)
+|.+.+.|-.--|. |+|...|=-+=.+++-.++.-.|++ ...+|+||.-.|-.||..|+..=-...+.|.+-.-
T Consensus 76 lKLias~~f~dKRi-----GYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~L 150 (866)
T KOG1062|consen 76 LKLIASDNFLDKRI-----GYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERL 150 (866)
T ss_pred HHHhcCCCchHHHH-----HHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHH
Confidence 45566666555554 3444333222234455555555555 67789999888777777655443344577778888
Q ss_pred ccCCCHHHHHHHHHHHHhhcccc
Q 020587 208 LKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 208 ~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
++|++|-||.+++.|..+.+.+.
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999875
No 85
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.72 E-value=9.5 Score=38.12 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=86.1
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH-------------HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587 124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM-------------IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA 190 (324)
Q Consensus 124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m-------------~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a 190 (324)
++..++..+.+ ..+...|...++-|+.-...-+ .+++..++|.|+.+..+...-++...-.||-.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 33445555555 4555666555555544422111 35688999999999887766688888999999
Q ss_pred HHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH
Q 020587 191 MTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS 249 (324)
Q Consensus 191 mv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~ 249 (324)
++.+++.. .++|.|..++...|+.+|..+...|..+++.- ++-+.+ .++.+++.+.+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~-hl~sLI~~LL~ 413 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISE-HLSSLIPRLLK 413 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHH-HHHHHHHHHHh
Confidence 99999873 47778889999999999999999999988864 332333 36666665543
No 86
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.68 E-value=1.1 Score=37.79 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=64.1
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHh
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQL--PESREAARTLLLELQSVY 273 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~--pEvR~~AR~~l~~L~~~~ 273 (324)
.+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+.+.+.. ++||+....++......|
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 355577889999999999999999999999999988864444566778888888888765 448888888888777777
Q ss_pred hh
Q 020587 274 EK 275 (324)
Q Consensus 274 ~~ 275 (324)
..
T Consensus 114 ~~ 115 (133)
T smart00288 114 KN 115 (133)
T ss_pred cC
Confidence 54
No 87
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.59 E-value=4.8 Score=40.59 Aligned_cols=88 Identities=23% Similarity=0.207 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHH
Q 020587 166 LVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ 245 (324)
Q Consensus 166 l~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~ 245 (324)
+..|+..+.+....++.++..+|. .+....+.+.|...++|.+|.||..+...+.. .+.. -.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~----r~~~---------~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPWLEPLLAASEPPGRAIGLAALGA----HRHD---------PGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHHHHHHhcCCChHHHHHHHHHHHh----hccC---------hHH
Confidence 677777777878889999999986 47778888899999999999999877655443 1111 234
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 246 VAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 246 ~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.+..+|+|.++.||..|-+++..+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 5667788999999999999997554
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.40 E-value=21 Score=35.73 Aligned_cols=188 Identities=19% Similarity=0.112 Sum_probs=129.5
Q ss_pred CHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhh
Q 020587 79 DIDTSVKTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYND 156 (324)
Q Consensus 79 dpe~~L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~ 156 (324)
+.+..+..++... .+.++..+.-++..+-.|+-.+++. ..+.+++..+...+ .+-.+.....++..+.=+.++|=-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~ 263 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVM 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHH
Confidence 5555666666664 3456777888888777776543211 13444444444444 566677777888888888888765
Q ss_pred hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC---------------hhh----hHHHHhhhccCCCHHHHH
Q 020587 157 RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS---------------PIL----LLPKLQPYLKNRNPRIRA 217 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs---------------~~~----ll~~L~~~~~hKNp~VR~ 217 (324)
.-+|....++..|+...++ .-+...+.+++..++.-.. -+| ++|.|..+.+.-+..+|.
T Consensus 264 R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 264 RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 5578888888888888877 4456666667665554411 122 566777777666666788
Q ss_pred HHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 218 KASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 218 ~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
.-...|..+++.+... +....++.+++.+.+.|.=.++++|.++-.++..+..
T Consensus 342 ~yL~ALs~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8888888888877544 5445699999999999999999999998888865443
No 89
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=24 Score=40.75 Aligned_cols=214 Identities=16% Similarity=0.091 Sum_probs=144.8
Q ss_pred cccceeccCCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHH
Q 020587 63 NSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCK 141 (324)
Q Consensus 63 ~~~~~yi~~eeL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk 141 (324)
..+..|.+..+-.-+.+.+..+..++..|...|=..++.||..+-.+... ..+.+.+.++.....+.+.+.|--=.|=.
T Consensus 22 ~~~~n~~~~~~~~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~ 101 (1312)
T KOG0803|consen 22 SASINSASSNPDPFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRL 101 (1312)
T ss_pred cccccccccCCChHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHH
Confidence 34444555443333445667799999999999999999999999999653 23445455777777778888887777777
Q ss_pred HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---------hhcChh--------------
Q 020587 142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT---------TWVSPI-------------- 198 (324)
Q Consensus 142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv---------~~vs~~-------------- 198 (324)
.....+..+...+++.+.||+..+++..+--..+.-.-++..|-.+..... ..|.+.
T Consensus 102 ~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~ 181 (1312)
T KOG0803|consen 102 LTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETP 181 (1312)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCc
Confidence 777888889999999999999999999885555544444444444333211 111110
Q ss_pred hhHH---HH-hhhccCCCHHHHHHHHHHHHhhcccccccchhh-----ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 199 LLLP---KL-QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE-----YGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 199 ~ll~---~L-~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~-----~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.-++ .+ ...+..|.++|-+.+..++..++...|...-.. ...-.-.+..-+++.+.+|.+|.+...++..+
T Consensus 182 ~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 182 DSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred cccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 0111 12 245556778888888888888887766653322 12333456778899999999999999999877
Q ss_pred HHHhhhc
Q 020587 270 QSVYEKS 276 (324)
Q Consensus 270 ~~~~~~~ 276 (324)
.+-....
T Consensus 262 ~~~i~~~ 268 (1312)
T KOG0803|consen 262 IDDILNR 268 (1312)
T ss_pred HhhhHHh
Confidence 6555444
No 90
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.02 E-value=29 Score=36.83 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=104.9
Q ss_pred HHHHHhhcCCC----CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 84 VKTLVAGLDSK----DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 84 L~~~l~~L~s~----dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
+.-++..|.+. -..+.+.|+..+. ..-.+.+......+++-+.+.++-.-+.|+-.|+-.++||+.+|+.+|.
T Consensus 599 m~Lf~r~les~~~t~~~~dV~~aIsal~---~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 599 MELFIRILESTKPTTAFGDVYTAISALS---TSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHhccCCchhhhHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444445443 2344444444332 2123344456777888889999889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHhhcChhhhHHHHhhhccC---CC-----HHHHHHHHHHHH
Q 020587 160 DLLDPLLVQLLLKSSQDK-------RFVCEAAEKALVAMTTWVSPILLLPKLQPYLKN---RN-----PRIRAKASMCFS 224 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~sk-------~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~h---KN-----p~VR~~aa~~L~ 224 (324)
+|.|.++..|....++.+ .++.-=.+-||..=....++-..+-.|....++ .| -..|.++...+.
T Consensus 676 ~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~ 755 (858)
T COG5215 676 IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVN 755 (858)
T ss_pred HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHH
Confidence 999999999998887642 133333333333222223343433333322221 11 134444444443
Q ss_pred hhccccccc------chhhccHHHHHHHHHHhccCCCH-HHHH-HHHHHHHHHHHHhhhc
Q 020587 225 RSVPRLGVE------GIKEYGIDKLIQVAASQLSDQLP-ESRE-AARTLLLELQSVYEKS 276 (324)
Q Consensus 225 ~~v~~~g~~------~i~~~~~~~ll~~l~~~L~D~~p-EvR~-~AR~~l~~L~~~~~~~ 276 (324)
...--+|.. .+..+ .-.+..-+.....|++. |.-. +|-.++.-|-..|++.
T Consensus 756 ~ayVgI~~~~~nr~~~v~Py-v~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 756 CAYVGIGDSSKNRVRSVLPY-VISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HHHHHhhhhhhhhHHHhhhH-HHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 333323322 11222 34444455555567665 2222 3444455566677755
No 91
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=13 Score=40.20 Aligned_cols=136 Identities=21% Similarity=0.173 Sum_probs=96.9
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChh
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPI 198 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~ 198 (324)
..++.-+.|.+.+.+..+.+=..++.+++--|.+-|+. ..+..||+- .+|.|.=||.+|-.||..++-. .|.
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~ 588 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE 588 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeEec-Chh
Confidence 34444455555666777777777777666555555432 467788888 4788999999999999886543 445
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.+...+..-..|-||-||..+|..|-.++...|. ...+..+-.+..|...-||+.|--++.+.+
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 5555556666789999999999999888775443 445556666778999999999988887554
No 92
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.53 E-value=4.2 Score=36.53 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhH-cHHHHHHhhhhHH------------HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 98 VVCEALNNVRRLSIF-HKEAMLDILGDVI------------PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 98 ~r~eaL~~LRrLa~~-h~~~l~~~L~~iv------------~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
-|..||..|..++++ .+..+.+.++.+. ..+.-.++|+-..|=-.|+.+++.|+.+.+.-+.. ++.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~-Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ-AEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH-HHh
Confidence 478899999999887 4444443333222 23445667888888889999999998886433221 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc-cCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
.- +....|+.=... |..|+..++ ..|...+ ..+++.+-..+.+|+..++....=+++...-+..+
T Consensus 81 ~~-------~~~~sFtslS~t--La~~i~~lH-----~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~ 146 (182)
T PF13251_consen 81 SK-------GPSGSFTSLSST--LASMIMELH-----RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV 146 (182)
T ss_pred cC-------CCCCCcccHHHH--HHHHHHHHH-----HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence 00 122245443332 333333211 1233333 46788888899999999998755455554448899
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 244 IQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 244 l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+..+..++...++++|.++--++..+....+
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999988887776554
No 93
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.52 E-value=19 Score=33.96 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=100.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc--cCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL--KNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v--ksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
-+...|++++=..+..||+.+--++....... .+...+..|.+.+ ..+.|.+-..|+..+..|... ++....+-
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~ 133 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLA 133 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHH
Confidence 44455667776777888888888766432221 2333344444432 247889988999888888432 32233344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-hH-----HHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchh
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-LL-----PKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIK 236 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-ll-----~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~ 236 (324)
..++.|+......+.-++..+-++|--+..+-...+ ++ ..+..-+. +-+..+...+..++.++-+.+..+...
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 455666655555556677777777665544433211 22 22322222 335666666767777666655444211
Q ss_pred --------------hccHHHHHHHHHHhccCCCHHHHHH
Q 020587 237 --------------EYGIDKLIQVAASQLSDQLPESREA 261 (324)
Q Consensus 237 --------------~~~~~~ll~~l~~~L~D~~pEvR~~ 261 (324)
.++.+.+.+-+..++...++|||+.
T Consensus 214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1256778888888888888888864
No 94
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=13 Score=40.34 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=96.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHH----------------------------------hhhhHHHHHHHHccCcc
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLD----------------------------------ILGDVIPLVVKSLKNPR 136 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~----------------------------------~L~~iv~~l~~~vksLR 136 (324)
+++.+=..|+.|+..|-++|..||..... .|-..+...+-.|.+=-
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF 370 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF 370 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc
Confidence 35778888999999999999988753321 01111222233334444
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC-ChHHHHH-----------HHHHHHHHH---HhhcChhh--
Q 020587 137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ-DKRFVCE-----------AAEKALVAM---TTWVSPIL-- 199 (324)
Q Consensus 137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~-sk~FI~e-----------~A~~AL~am---v~~vs~~~-- 199 (324)
-.|+-+|+.++.-.|......|..+++.++.. ..+- -|+-+-+ .=+..|... ++.|-...
T Consensus 371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~---eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~ 447 (865)
T KOG1078|consen 371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE---EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIA 447 (865)
T ss_pred eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHH
Confidence 45556677777777777777776666655443 1111 1211111 111222222 22232222
Q ss_pred --hHHHHh-hhccC----------------CCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHH
Q 020587 200 --LLPKLQ-PYLKN----------------RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESRE 260 (324)
Q Consensus 200 --ll~~L~-~~~~h----------------KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~ 260 (324)
++..|- .|-+. -|..||+.+..+|...- .+.+.+ ...+.-.+.+++.|++-|+|+
T Consensus 448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l----~~sI~vllkRc~~D~DdevRd 521 (865)
T KOG1078|consen 448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVL----LPSILVLLKRCLNDSDDEVRD 521 (865)
T ss_pred HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCc----cccHHHHHHHHhcCchHHHHH
Confidence 222221 23232 34567777777766655 222222 566777889999999999999
Q ss_pred HHHHHHHHHH
Q 020587 261 AARTLLLELQ 270 (324)
Q Consensus 261 ~AR~~l~~L~ 270 (324)
.|+-.+..+.
T Consensus 522 rAtf~l~~l~ 531 (865)
T KOG1078|consen 522 RATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhh
Confidence 9999988777
No 95
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.97 E-value=10 Score=40.87 Aligned_cols=169 Identities=19% Similarity=0.151 Sum_probs=112.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+..++.+.+++|=..|+..|..|++|.-...+.=...+..+...+...++|--+.|=.+|..+++.+= ++.-++.+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---~d~~dee~ 162 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---GDPKDEEC 162 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---cCCCCCcc
Confidence 356777778899999999999999999763322222335556677788888888999999998876553 24455555
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 163 DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 163 d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+ ++..|..-..++ +.=|| ++.-.++ ...+.-+|.|..-..+-+..+|+.+-. +|+++++ +.....+
T Consensus 163 ~-v~n~l~~liqnDpS~EVR----RaaLsnI--~vdnsTlp~IveRarDV~~anRrlvY~---r~lpkid---~r~lsi~ 229 (892)
T KOG2025|consen 163 P-VVNLLKDLIQNDPSDEVR----RAALSNI--SVDNSTLPCIVERARDVSGANRRLVYE---RCLPKID---LRSLSID 229 (892)
T ss_pred c-HHHHHHHHHhcCCcHHHH----HHHHHhh--ccCcccchhHHHHhhhhhHHHHHHHHH---Hhhhhhh---hhhhhHH
Confidence 4 334444444332 43333 3322222 223446677777778888888887744 3455542 2233567
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
+-+..+..+|+|+.-.||.+..+++.
T Consensus 230 krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 230 KRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 78888889999999999999888876
No 96
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.34 E-value=2.3 Score=37.93 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
++-++.|...+.+.+..+|..+..++..+++. |-- .....++.+..+..|.++.+|..|..++..+.+-|+..-
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 34566777788899999999999988887775 221 246688888889999999999999999988877776544
No 97
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=11 Score=38.97 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=97.6
Q ss_pred HHHHHHHhhhh-HH--hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhcc-CCCHHHH
Q 020587 147 AADIFSAYNDR-MI--DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLK-NRNPRIR 216 (324)
Q Consensus 147 l~dLf~~L~~~-m~--~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~-hKNp~VR 216 (324)
++.+.+..+.. ++ +-++.++..|..|+.+.+..++..|.+.|..+..-++. +.++..|..++- .-|..|-
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~ 317 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQ 317 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHH
Confidence 33444444433 33 45788999999999999999999999999999887443 235556666664 4668899
Q ss_pred HHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 217 AKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 217 ~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
-++..+|..+++......+..+ .-.+.-.+..+..|.+++.|.+|-.++..|-..-+...
T Consensus 318 leam~~Lt~v~~~~~~~~l~~~-~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~ 377 (533)
T KOG2032|consen 318 LEAMKCLTMVLEKASNDDLESY-LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW 377 (533)
T ss_pred HHHHHHHHHHHHhhhhcchhhh-chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence 9999999999988766656555 44555667789999999999999999988876655443
No 98
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.06 E-value=13 Score=30.43 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHhhhhHHHHHHHHccCcc--h--HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020587 114 KEAMLDILGDVIPLVVKSLKNPR--S--AVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALV 189 (324)
Q Consensus 114 ~~~l~~~L~~iv~~l~~~vksLR--S--~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~ 189 (324)
++++.+.+=.++..+...+.|.+ - .--+.++..+++|-+..|+.+......+...|..-... .=+++.+-.|..
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~ 79 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWH 79 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHH
Confidence 35566666666667777777776 2 22678999999999999998888888888887766654 349999999999
Q ss_pred HHHhhcChhhhHHHHh
Q 020587 190 AMTTWVSPILLLPKLQ 205 (324)
Q Consensus 190 amv~~vs~~~ll~~L~ 205 (324)
.++++..+..+-+.|.
T Consensus 80 ~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 80 VLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 9999999988776553
No 99
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=86.81 E-value=33 Score=33.94 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhHcHHHHHHhhh----hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 020587 97 VVVCEALNNVRRLSIFHKEAMLDILG----DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK 172 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~h~~~l~~~L~----~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K 172 (324)
.-.+|.|.-+++|...+|+.+....+ .++..+....++.|+. |..+..++...++. ...+-..+...+.+
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~----a~~l~~~~~~~l~~--~~~~s~~~~~~~~~ 222 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK----AISLLLEAKKCLGP--NKELSKSVLEDLQR 222 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHhCh--hHHHHHHHHHHhcc
Confidence 45789999999999999998876655 4455555556666655 44444455455553 22344444555555
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhh-ccHHHHHHHHHHhc
Q 020587 173 SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE-YGIDKLIQVAASQL 251 (324)
Q Consensus 173 a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~-~~~~~ll~~l~~~L 251 (324)
.-..+ -+.+.-..-|..|+..-...+..+.|+... ..+| |...+.. .-....+...-.+.
T Consensus 223 ~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~-----------i~LL-------~~~~~~~w~~~n~wL~v~e~cF 283 (372)
T PF12231_consen 223 SLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVV-----------ILLL-------GSSRLDSWEHLNEWLKVPEKCF 283 (372)
T ss_pred ccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHH-----------HHHh-------CCchhhccHhHhHHHHHHHHHh
Confidence 44434 344555666777776645555555555443 1111 2221111 12788899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 020587 252 SDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 252 ~D~~pEvR~~AR~~l~~L~~~ 272 (324)
++++|.+|..|-.+-..|...
T Consensus 284 n~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999887766653
No 100
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=86.12 E-value=11 Score=32.69 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHHhHcHH----------HHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 95 DWVVVCEALNNVRRLSIFHKE----------AMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~----------~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
++..+.=||..+..+...|+. ++...-.++++.+.+.+.+-...+...++..+.-|+..++..+..+++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888877665433 3333335677888888877679999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587 165 LLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKL 204 (324)
Q Consensus 165 ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L 204 (324)
++..++.+.-++ +.-.. .=..+|..+..-+..+.++-.+
T Consensus 115 ~l~~i~~~il~~~~~~~~-~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLW-QKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHhChhHHHHH
Confidence 999999976432 21111 2223455555555555554433
No 101
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.09 E-value=3.7 Score=35.19 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred ChhhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHH-HHHhccC---CCHHHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV-AASQLSD---QLPESREAARTLLLELQ 270 (324)
Q Consensus 196 s~~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~-l~~~L~D---~~pEvR~~AR~~l~~L~ 270 (324)
.|...+..|..-++ ++||.+...+..+|..|+++-|..-..+.....+++. +.+.+.+ ...+|+.-...++....
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 45557777777776 6899999999999999999998864433345566665 7777764 34588988888888777
Q ss_pred HHhhhc
Q 020587 271 SVYEKS 276 (324)
Q Consensus 271 ~~~~~~ 276 (324)
..|...
T Consensus 115 ~~f~~~ 120 (141)
T cd03565 115 DAFRGS 120 (141)
T ss_pred HHhCCC
Confidence 777543
No 102
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.08 E-value=6.5 Score=45.34 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh---cC---hhhhHHHHhhhccCCCHHHHH
Q 020587 144 IMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW---VS---PILLLPKLQPYLKNRNPRIRA 217 (324)
Q Consensus 144 ~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~---vs---~~~ll~~L~~~~~hKNp~VR~ 217 (324)
.--++.|.+.-|..++||+..++|-|..==-|-++-|+.+-..--+++++- +- ...++..|..++.+|-.+||.
T Consensus 978 AfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRe 1057 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVRE 1057 (1702)
T ss_pred hhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 344555555567778999999999998665555555554433333333321 11 123566788899999999999
Q ss_pred HHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 218 KASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 218 ~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
.+|..|..+++......+.+. +..+-.++.+-..|=-.-||++|-++...|.++--..-+
T Consensus 1058 asclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998655545444 788899999999999999999999999988887766655
No 103
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=86.03 E-value=16 Score=39.79 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=127.8
Q ss_pred CHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHH-----Hhhh------------------------------
Q 020587 79 DIDTSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAML-----DILG------------------------------ 122 (324)
Q Consensus 79 dpe~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~-----~~L~------------------------------ 122 (324)
.-...+-..++.+. .++|..|-.++..++.++..||+.-. +.+.
T Consensus 155 ~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 155 EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH
Confidence 33445555666664 56899999999999998887754322 1000
Q ss_pred --hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--
Q 020587 123 --DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-- 198 (324)
Q Consensus 123 --~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-- 198 (324)
++.+..-...++--.-|=++++.-++.++.++.. +...+.+++.+.....|+..-|++.|-.++..+.......
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d 312 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD 312 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh
Confidence 0001111111111122223333444455555554 3334556666777778888999999999999999998777
Q ss_pred ---hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 199 ---LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 199 ---~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+.+.+......++.++|..++.....+-..+|+.. +...+.+.....+.|.-.|+|++.-.-...|...+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~----~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA----TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc----CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 567778888899999999999999999999988842 245566777788899999999988777766665555
No 104
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=14 Score=40.92 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=77.8
Q ss_pred CCCCCCCCcccceeccCCCCCCCCCHHHHH----HHHHhhcCCCCHHHHHHHHHHHHH---HHhHcHHHHHHhhhhHHHH
Q 020587 55 GNAGPGIANSEVEYIDSENLIDVEDIDTSV----KTLVAGLDSKDWVVVCEALNNVRR---LSIFHKEAMLDILGDVIPL 127 (324)
Q Consensus 55 ~~~~~~~~~~~~~yi~~eeL~pl~dpe~~L----~~~l~~L~s~dW~~r~eaL~~LRr---La~~h~~~l~~~L~~iv~~ 127 (324)
++++++.+|..-+|-+.| +++++--..+ .....-|++++=..|+++|+-++- +...|++.+.+..|..=+.
T Consensus 774 ~e~~~e~edens~~~d~e--p~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~ 851 (1014)
T KOG4524|consen 774 EEREEEVEDENSEYTDTE--PILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPS 851 (1014)
T ss_pred CCCCCCccccccCCCCCC--CCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhH
Confidence 344455555555555544 4444444443 444555789999999999999986 3455677788999998888
Q ss_pred HHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-hhHHHHHHHH
Q 020587 128 VVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-DLLDPLLVQL 169 (324)
Q Consensus 128 l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~~~d~ll~~L 169 (324)
|+..++.=.--+.--|+.|+-.|...-|+-+. +++..++|.|
T Consensus 852 vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 852 VIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99988887778888899988888877776554 3344444444
No 105
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=85.12 E-value=5.7 Score=35.30 Aligned_cols=91 Identities=20% Similarity=0.109 Sum_probs=64.5
Q ss_pred hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhH
Q 020587 122 GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLL 201 (324)
Q Consensus 122 ~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll 201 (324)
......+.++++|-+.=+-|.|+.++...+.. .+++.++..+-..+.+...||+.+...+|..+... .|..+.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 44556778899999999999999776433222 66777888877788888999999999999997766 777788
Q ss_pred HHHhhhccCCCHHHHHHH
Q 020587 202 PKLQPYLKNRNPRIRAKA 219 (324)
Q Consensus 202 ~~L~~~~~hKNp~VR~~a 219 (324)
+.|.....+=++.+++++
T Consensus 192 ~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 192 EFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp HHHHHS-----HHHHHHH
T ss_pred HHHHHCcccCchhHHHHH
Confidence 888776555555555554
No 106
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.85 E-value=22 Score=31.60 Aligned_cols=132 Identities=20% Similarity=0.192 Sum_probs=86.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc----cH
Q 020587 167 VQLLLKSSQDKRFVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY----GI 240 (324)
Q Consensus 167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~----~~ 240 (324)
+.+|+-+-..+.-+|..|-..+..+++. ++|..++|.|..-..+.|+.+|..+...+..+.++.+. +... |.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s--~v~~~~~~gi 88 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES--LVESRYSEGI 88 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Confidence 3444455566788999999999999987 59999999998888899999999999999999998743 2211 23
Q ss_pred HHHHHHHHHhccCCCH------------------HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCC
Q 020587 241 DKLIQVAASQLSDQLP------------------ESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLS 302 (324)
Q Consensus 241 ~~ll~~l~~~L~D~~p------------------EvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~ 302 (324)
..-.+.-...-.|... ..|..-++.+..|.+.|....-.. +.++....-..-.||-.+|.
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~--~~~~~~~~l~~~~Fla~nLA 166 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKL--SSESSPSDLDFLLFLAENLA 166 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhcccc--ccccchhHHHHHHHHHHHHh
Confidence 3333333333333332 236777777777888887654211 02223334455566666554
No 107
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.55 E-value=22 Score=33.71 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=96.2
Q ss_pred HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH----Hhh--HHHHHHHHHHHhc--------CChHH
Q 020587 114 KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM----IDL--LDPLLVQLLLKSS--------QDKRF 179 (324)
Q Consensus 114 ~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m----~~~--~d~ll~~LL~Ka~--------~sk~F 179 (324)
...+...++-+++.++..++|....+-..||.++..|........ ... .+.+-.+|..... +..--
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 345667889999999999999999999999999999999765333 211 2333333333333 44566
Q ss_pred HHHHHHHHHHHHHhhc----------ChhhhHHH-HhhhccC--C--CHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 180 VCEAAEKALVAMTTWV----------SPILLLPK-LQPYLKN--R--NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 180 I~e~A~~AL~amv~~v----------s~~~ll~~-L~~~~~h--K--Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
+-..+-.||...+... ...+++.. |..+..| + ++.+|...+..+..++..+|...++ + +.+++
T Consensus 190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~-h-L~rii 267 (282)
T PF10521_consen 190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVK-H-LQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHH-H-HHHHH
Confidence 7777888887775431 11233332 4444432 3 6999999999999999999997444 3 68888
Q ss_pred HHHHHhccCCC
Q 020587 245 QVAASQLSDQL 255 (324)
Q Consensus 245 ~~l~~~L~D~~ 255 (324)
+.+...+.+..
T Consensus 268 ~~l~~~l~npf 278 (282)
T PF10521_consen 268 PVLSQILENPF 278 (282)
T ss_pred HHHHHHhcCCC
Confidence 88888777654
No 108
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=84.35 E-value=1.6 Score=38.86 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=61.8
Q ss_pred HHhhHHHHHHHHHHHhcCChH------------------HHHHHHHHHHHHHHhhcC----hhhhHHHHhhhccCCCHHH
Q 020587 158 MIDLLDPLLVQLLLKSSQDKR------------------FVCEAAEKALVAMTTWVS----PILLLPKLQPYLKNRNPRI 215 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~sk~------------------FI~e~A~~AL~amv~~vs----~~~ll~~L~~~~~hKNp~V 215 (324)
+.|+++.++|.|+..+.-.+. =+|..|=.+|.++...+. ...++..+..|+++ ...|
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 357788888888866554333 478899999999987753 35566778899999 9999
Q ss_pred HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhc
Q 020587 216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQL 251 (324)
Q Consensus 216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L 251 (324)
|--+...|.+++..- +..+... ++.+++.+.+.|
T Consensus 82 k~L~~~~l~kl~~~~-p~~v~~~-Ld~l~~~l~~~L 115 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLA-PEEVLQR-LDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHS--HHHHHHC-CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-HHHHHHH-HHHHHHHHHHHh
Confidence 999999999997764 3323333 444444444444
No 109
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.78 E-value=22 Score=28.88 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=65.0
Q ss_pred HHHHHhhhhHHHHHHHHccC----cchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587 115 EAMLDILGDVIPLVVKSLKN----PRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA 190 (324)
Q Consensus 115 ~~l~~~L~~iv~~l~~~vks----LRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a 190 (324)
+++.+.+=.++..+...+.| --..-=+.++..+++|.+..++.+......++..|-.-... .-+++.+-.|...
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~ 80 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHH
Confidence 34554444455555555555 22233467899999999977888888888888877766555 3789999999999
Q ss_pred HHhhcChhhhHHHHh
Q 020587 191 MTTWVSPILLLPKLQ 205 (324)
Q Consensus 191 mv~~vs~~~ll~~L~ 205 (324)
++++.++..+-+.|.
T Consensus 81 fi~~L~~~~l~~ll~ 95 (107)
T PF08064_consen 81 FIKTLDEEDLGPLLD 95 (107)
T ss_pred HHHHCCHHHHHHHHH
Confidence 999999988777654
No 110
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=83.42 E-value=4.4 Score=32.90 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=51.5
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHh-----c-cCCCHHHHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQ-----L-SDQLPESREAARTLLLEL 269 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~-----L-~D~~pEvR~~AR~~l~~L 269 (324)
+..++..|..-++|+||.+..++..+|..|+++-|..-........++.-+.++ . .|.+..||+.++.++...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345777888888999999999999999999999777633333222233333222 2 355899999999888643
No 111
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.41 E-value=11 Score=40.15 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=107.7
Q ss_pred HHHHHhhhhHHhhHH-----HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh----hHHHHhhhccCCCHHHHHHH
Q 020587 149 DIFSAYNDRMIDLLD-----PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKA 219 (324)
Q Consensus 149 dLf~~L~~~m~~~~d-----~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----ll~~L~~~~~hKNp~VR~~a 219 (324)
++|..|.+.++.+-+ .+++.||....-.. -..+.-..|-.+........ ++|.|..-.+....+||-..
T Consensus 273 ~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~L 350 (690)
T KOG1243|consen 273 KFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLL 350 (690)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHH
Confidence 677777776655543 45555655543211 11111222334444444433 89999999999999999999
Q ss_pred HHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCC-------CCCCCCCcchhH
Q 020587 220 SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSA-------PATVSDSPEMDS 292 (324)
Q Consensus 220 a~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~-------~~~~~~~~~~~~ 292 (324)
..++...++.+..+.+ -+.+++.++.++.|.++-.|+.+-+.+..|........-.. -.++.++..--.
T Consensus 351 L~~i~~~i~~Lt~~~~----~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irt 426 (690)
T KOG1243|consen 351 LQYIEKYIDHLTKQIL----NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRT 426 (690)
T ss_pred HHhHHHHhhhcCHHhh----cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccc
Confidence 9999999999877644 47799999999999999999999999998888877763211 123434445677
Q ss_pred HHHHHHhcCChhhHHHH
Q 020587 293 WENFCQSKLSPLSAQAV 309 (324)
Q Consensus 293 w~~~~~~~l~~~~~~~~ 309 (324)
|..-|-.+.++..+..+
T Consensus 427 ntticlgki~~~l~~~~ 443 (690)
T KOG1243|consen 427 NTTICLGKIAPHLAASV 443 (690)
T ss_pred cceeeecccccccchhh
Confidence 88888888877765544
No 112
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.40 E-value=27 Score=34.69 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC--ChHHHHHHH-HHHHHHHHhhcCh----------------
Q 020587 137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ--DKRFVCEAA-EKALVAMTTWVSP---------------- 197 (324)
Q Consensus 137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~--sk~FI~e~A-~~AL~amv~~vs~---------------- 197 (324)
.+--++|+..+-.|.+.++..+.+.+-..+..+|..-+. .+..-..++ -.-+.++......
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 344567888888888888888888888888888875321 233333333 2333344433311
Q ss_pred ---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 020587 198 ---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTL 265 (324)
Q Consensus 198 ---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~ 265 (324)
..++|.|+ .-..+.|-+|+.+..++..--..+..+ .+..+++.+..+|.+.+.-|+.||-.+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-----~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-----QLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 11234444 233788999999999998777765432 367799999999999999999998755
No 113
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.30 E-value=21 Score=39.20 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=109.1
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChh
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPI 198 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~ 198 (324)
.+..+...+...|-|..=.-=++|+.-+.+..+.-+.........++-.+++. ..|.|..+..-+..+|..|+....+.
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44555556666666666666667777666666666533344444455555544 56889999999999999999887543
Q ss_pred ------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 199 ------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 199 ------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
.++|.|..+++.|.+.+|..+..++...+. .+.+..+.+.+..++.+++|..|......+..+...
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN--------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 256678899999999999999888888777 234889999999999999999999877777766666
Q ss_pred hhh
Q 020587 273 YEK 275 (324)
Q Consensus 273 ~~~ 275 (324)
+++
T Consensus 402 ~~~ 404 (815)
T KOG1820|consen 402 LGP 404 (815)
T ss_pred cCC
Confidence 663
No 114
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.21 E-value=33 Score=36.53 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=99.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
..+..++.+++++|=..|...|+.|+++...-.++=......++..+.+.+=|--++|=++|..|+..+-. ...++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe---~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE---MELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh---ccCChH
Confidence 35778889999999999999999999997644332222234445566677778889999999988876542 111222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKA--LVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~A--L~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
-+ +...|+.-..++ -- .+.+++ |...+.+- -.|.|..-+.+-|...|+.+ ..+|+.++|.-....
T Consensus 168 n~-~~n~l~~~vqnD--PS-~EVRr~allni~vdns----T~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~ls-- 234 (885)
T COG5218 168 NR-IVNLLKDIVQND--PS-DEVRRLALLNISVDNS----TYPCILERARDVSGANRRMV---YERCLPRIGDLKSLS-- 234 (885)
T ss_pred HH-HHHHHHHHHhcC--cH-HHHHHHHHHHeeeCCC----cchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhcc--
Confidence 11 222222222222 11 122222 12222222 23444555556666677654 456778887643222
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 240 IDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
.++=+-.+..+|.|+.-.||.++..++.
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHH
Confidence 2222236778888888888888887764
No 115
>PF05536 Neurochondrin: Neurochondrin
Probab=82.97 E-value=58 Score=34.11 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=133.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH---HhhhhHH-HHHHHHccC-------cchHHHHHHHHHHHHH
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML---DILGDVI-PLVVKSLKN-------PRSAVCKTAIMTAADI 150 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~---~~L~~iv-~~l~~~vks-------LRS~Vsk~A~~tl~dL 150 (324)
..+..++..|++++=++|+-||..+.++....+..-. ..++.+- ..+...++. .+.....-|+..++-+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5688999999999877899999999999885542111 1111111 222223222 3344444455444444
Q ss_pred HHHhhhhH--HhhHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHhhcChhh-hH-----HHHhhhccCCCHHHHHHHHH
Q 020587 151 FSAYNDRM--IDLLDPLLVQLLLKSSQDKR-FVCEAAEKALVAMTTWVSPIL-LL-----PKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 151 f~~L~~~m--~~~~d~ll~~LL~Ka~~sk~-FI~e~A~~AL~amv~~vs~~~-ll-----~~L~~~~~hKNp~VR~~aa~ 221 (324)
+. -+++ ++.+-..+|.|+.-...... -+.+++-.+|..++.+=...+ ++ +.|...+.+ ++.....+..
T Consensus 85 ~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 43 2333 46677788888877755444 788888889998885433332 33 345555555 7778888888
Q ss_pred HHHhhcccccccchhhc--cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHH-----
Q 020587 222 CFSRSVPRLGVEGIKEY--GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWE----- 294 (324)
Q Consensus 222 ~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~----- 294 (324)
.+..++.+.+...+... .+..+++.++.......-+.+-. ++..|...++... .. +......++|-
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfe---ll~~L~~~L~~~~---~~-~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFE---LLEFLSAFLPRSP---IL-PLESPPSPKWLSDLRK 234 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHH---HHHHHHHhcCcCC---cc-ccccCChhhhHHHHHH
Confidence 88888888775544332 46677777776665444443333 3445556665541 11 22233445664
Q ss_pred ---HHHHhcCChhhHHHHHHHhhh
Q 020587 295 ---NFCQSKLSPLSAQAVLRVTNI 315 (324)
Q Consensus 295 ---~~~~~~l~~~~~~~~~~~~~~ 315 (324)
...++++++..=.+.+++.+.
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~ 258 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAAS 258 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 456777777766666665543
No 116
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.85 E-value=3.4 Score=34.81 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=51.3
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhcc--------CCCHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQLS--------DQLPESREAARTLL 266 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~--------D~~pEvR~~AR~~l 266 (324)
...++..|..-+++++|-|+.++.++|..|+..- .+..... ....+++.+..|-. |.+..||..|+.++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3457778889999999999999999999999974 4323221 23345555555554 34578999999998
Q ss_pred HHH
Q 020587 267 LEL 269 (324)
Q Consensus 267 ~~L 269 (324)
..+
T Consensus 115 ~~i 117 (122)
T cd03572 115 KAI 117 (122)
T ss_pred HHH
Confidence 644
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=82.63 E-value=31 Score=39.41 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=74.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh----hHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND----RMI 159 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~----~m~ 159 (324)
+..++..|... +.+.+||..|+.|+.+-.+.. .|..|++-++-...|.=..|=-+|+.|+.++....++ +-.
T Consensus 427 lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 427 LTSCIRALKTI--QTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred HHHHHHhhhcc--hhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 45556666543 458899999999988765443 4888889899999999999999999999999877652 223
Q ss_pred hhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 020587 160 DLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVA 190 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~a 190 (324)
-|.|.|+|.|=+.+.+ ++..+|-+-..+|..
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~ 534 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQ 534 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHH
Confidence 4567788887777777 566666555544443
No 118
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.27 E-value=77 Score=34.10 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=102.8
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-----
Q 020587 124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----- 198 (324)
Q Consensus 124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----- 198 (324)
+++.+...-.-+...|----+.+++.+|+..|..-.+|+-.+.|-|-...-|..-.-|+-|...+..++-+|+..
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 344455544556666666677889999999999989999988888888888888888999999999888887542
Q ss_pred --hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 199 --LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 199 --~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
.++.+|++..-..+|-|....-+++..+-.-+|+. .+..-+.++|--.+..||+.-...+.
T Consensus 881 ~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g--------~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 881 AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG--------AMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH--------HHHHHHHHhccCchHHHHHHHHHHHh
Confidence 25556889999999999888877777666655553 45566777888888888876665554
No 119
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=81.66 E-value=31 Score=34.06 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=119.1
Q ss_pred HcHHHHHHhhhhHHHHHHHHccC-cc-hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020587 112 FHKEAMLDILGDVIPLVVKSLKN-PR-SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALV 189 (324)
Q Consensus 112 ~h~~~l~~~L~~iv~~l~~~vks-LR-S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~ 189 (324)
+.+.++.....+.+..++..+++ .. .++..+++.++.-|...+...|..+++.=++.|+...-.+.+-++..|...+.
T Consensus 121 f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~ 200 (372)
T PF12231_consen 121 FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLL 200 (372)
T ss_pred CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34555555555555566666665 44 46788999999999999999999998888888888887778889999999988
Q ss_pred HHHhhcChhhhHHH-HhhhccCCCH--HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 190 AMTTWVSPILLLPK-LQPYLKNRNP--RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 190 amv~~vs~~~ll~~-L~~~~~hKNp--~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
.+...+.+.+.+.. +...++.... .+......-|..++..-+. ......+=..+..+|.+..-+-..+....+
T Consensus 201 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~----~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL 276 (372)
T PF12231_consen 201 EAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE----YKLAMQIWSVVILLLGSSRLDSWEHLNEWL 276 (372)
T ss_pred HHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC----cchHHHHHHHHHHHhCCchhhccHhHhHHH
Confidence 88888887775553 4344432221 2333333333333332111 112556666777778666678888888888
Q ss_pred HHHHHHhhhcCCCCCCCCCC-CcchhHHHHHHHh
Q 020587 267 LELQSVYEKSHDSAPATVSD-SPEMDSWENFCQS 299 (324)
Q Consensus 267 ~~L~~~~~~~a~~~~~~~~~-~~~~~~w~~~~~~ 299 (324)
......|...- ++. .+....|..|+..
T Consensus 277 ~v~e~cFn~~d------~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 277 KVPEKCFNSSD------PQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHhcCCC------HHHHHHHHHHHHHHHHH
Confidence 88888887533 211 2357899998873
No 120
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=80.85 E-value=22 Score=30.07 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=62.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH--HHHHH
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL--DPLLV 167 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~--d~ll~ 167 (324)
.+.++||..-.+=.+.+++= . ..-.+.++.|.+.+++....|.-.|+..+..+.+..|..|..++ ...+.
T Consensus 17 ~~~~~Dw~~~l~icD~i~~~-~-------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 17 SLPSPDWSLILEICDLINSS-P-------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp TSSS--HHHHHHHHHHHHTS-T-------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcC-C-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 34577998877655555443 1 12356677888999999999999999999999999998886553 22333
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHHHHhhc
Q 020587 168 QLLLKS----SQDKRFVCEAAEKALVAMTTWV 195 (324)
Q Consensus 168 ~LL~Ka----~~sk~FI~e~A~~AL~amv~~v 195 (324)
.|.+.+ ......|++.+...+..+....
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 333222 2111226766666666665555
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=21 Score=39.21 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=117.5
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKL 204 (324)
Q Consensus 125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L 204 (324)
....+..+.|.-+.+--.|++.+.++++.-.+.-.-.-+.++...+....+...||==.|-+.+...|.- =|..++|.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHHH
Confidence 4556777888888888999999999999776665666778899999999999999988888877666654 677799988
Q ss_pred hh-hcc--CCC-HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 205 QP-YLK--NRN-PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 205 ~~-~~~--hKN-p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
.. |.. .|+ +.-|-++.+.+.+++++.|.= ...=.+.++.+...++.|.+-+-|..+-..+..|.+...
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel--~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL--VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccH--HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 75 553 333 578889999999999998873 322267899999999999988889999888888777665
No 122
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=16 Score=38.72 Aligned_cols=160 Identities=16% Similarity=0.070 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhH--cHHHHH-----------HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Q 020587 99 VCEALNNVRRLSIF--HKEAML-----------DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL 165 (324)
Q Consensus 99 r~eaL~~LRrLa~~--h~~~l~-----------~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l 165 (324)
..+++..+|..+.. |..+.. +.-+..-.-|.+.+.|.-|.+=-++..+++--|-.-|+. .+
T Consensus 479 s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~v 552 (926)
T COG5116 479 SVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNL------GV 552 (926)
T ss_pred CHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hh
Confidence 46788888877642 222211 111112223444555677766666666666555554432 47
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHH-HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 166 LVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLP-KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 166 l~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~-~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
+..||+- .++.|.=||.+|--||..+|. ....+++ .+..-..+.|+-||+.+|..|-..+..-| ....
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~--~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~~~a 622 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCC--DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------DKVA 622 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEe--cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------cHHH
Confidence 7888888 578899999999999887653 2333444 45566678999999999998877666443 4566
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHH-HHHHhh
Q 020587 244 IQVAASQLSDQLPESREAARTLLLE-LQSVYE 274 (324)
Q Consensus 244 l~~l~~~L~D~~pEvR~~AR~~l~~-L~~~~~ 274 (324)
.+.+..+..|.+.-||+.|--++.+ |+++-+
T Consensus 623 ~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 623 TDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 7778888999999999999887763 344444
No 123
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.60 E-value=13 Score=41.51 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc--ChhhhHHHHhhhccCCCHHHHHH
Q 020587 141 KTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV--SPILLLPKLQPYLKNRNPRIRAK 218 (324)
Q Consensus 141 k~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v--s~~~ll~~L~~~~~hKNp~VR~~ 218 (324)
-.+..|++.|+-.-++-...+++.++..|=.- +..-||.-.--|+.-+|.+- -..+-+|.|...+.+-.+.||+.
T Consensus 949 a~~vvTlakmcLah~~LaKr~~P~lvkeLe~~---~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 949 AVGVVTLAKMCLAHDRLAKRLMPMLVKELEYN---TAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh---hHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHH
Confidence 35788888888776655555555555554322 22233332222332222221 12347889999999999999999
Q ss_pred HHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 219 ASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 219 aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
+.-+|.+++++- +....=..++..+. .+-|+++++|..|+-++..+
T Consensus 1026 t~ilL~rLLq~~----~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1026 TIILLARLLQFG----IVKWNGELFIRFML-ALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHHHHHHHhhh----hhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHH
Confidence 999999999851 22222233444444 56799999999999877643
No 124
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=22 Score=35.72 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=90.3
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh------
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL------ 199 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~------ 199 (324)
..++..++=-+..|=++|+..+.|+....-..+..+.-.+++.+.....|...-+|+..-..++..+-...+..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 44566777777778889999999999997777788999999999999999999999999999998666655544
Q ss_pred -hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 200 -LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 200 -ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
+++.+..+..|=.|.||.-...++..++++.++.
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 3345667778999999999999999999998775
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=1.1e+02 Score=34.61 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=100.1
Q ss_pred HHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh--------h
Q 020587 127 LVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP--------I 198 (324)
Q Consensus 127 ~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~--------~ 198 (324)
.+.+.+...| ++--+|...+++++..+.+.=+.+...++...|...-+.+ ++..+..-.+.....| +
T Consensus 681 ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~----~~~~r~g~~lal~~lp~~~i~~~~q 755 (1133)
T KOG1943|consen 681 LLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS----EERIRRGLILALGVLPSELIHRHLQ 755 (1133)
T ss_pred HHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch----HHHHHHHHHHHHccCcHHhhchHHH
Confidence 3455556667 7778889999999999876555555568888887765442 2333333333333333 2
Q ss_pred hhH-HHHh-hhccCCCHHHHHHHHHHHHhhcccccc---cchhhccHHHHHHHHHHhccCCCHHH----HHHHHHHHHHH
Q 020587 199 LLL-PKLQ-PYLKNRNPRIRAKASMCFSRSVPRLGV---EGIKEYGIDKLIQVAASQLSDQLPES----REAARTLLLEL 269 (324)
Q Consensus 199 ~ll-~~L~-~~~~hKNp~VR~~aa~~L~~~v~~~g~---~~i~~~~~~~ll~~l~~~L~D~~pEv----R~~AR~~l~~L 269 (324)
+.+ ..+. ..-....+.-|.....-+...++..+. ......-++.|++++-.+..|...+| |++|-+++..+
T Consensus 756 ~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 756 EKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence 222 2222 222334777888888888888887762 11222238888888888888888775 55555554433
Q ss_pred HHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhHHHHHHHhhh
Q 020587 270 QSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNI 315 (324)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~ 315 (324)
--.... ++-.. +.-|........+|+|=|+..-
T Consensus 836 ~~~l~~---------p~~ld----~~~i~~~~~~~vqQ~veKIdrl 868 (1133)
T KOG1943|consen 836 LDTLSS---------PKLLD----EDSINRIIRYFVQQAVEKIDRL 868 (1133)
T ss_pred hhhhcC---------ccccc----HHHHHHHHHHHHHHhHHHHHHH
Confidence 322221 11111 1234445556667777777644
No 126
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=78.12 E-value=53 Score=29.75 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHh
Q 020587 139 VCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQ 205 (324)
Q Consensus 139 Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~ 205 (324)
.-...+..++.+|..+|..-.+++..++..|-+.-.+..--.+++++.|+.+.+..+.|..++..|-
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 4566788999999999999999999999998877766667789999999999999999999888654
No 127
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.01 E-value=42 Score=32.50 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhHcHHHHH----HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh---hH-----HhhHHH
Q 020587 97 VVVCEALNNVRRLSIFHKEAML----DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND---RM-----IDLLDP 164 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~h~~~l~----~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~---~m-----~~~~d~ 164 (324)
+.|..=.+.||.+..++++.+. ..+..++..+.-.++.....|+..++.++.+|+....+ .+ ..+.-.
T Consensus 135 e~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~ 214 (319)
T PF08767_consen 135 EHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLD 214 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4577777888889888766553 46788899999999999999999999999999999877 22 233344
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 165 LLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 165 ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
++..++.-+-|+ -++.-+.-...|..|+.-+....+-.-+.....+....|+...+..|...+..+... .+..+
T Consensus 215 il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~-----qi~~f 289 (319)
T PF08767_consen 215 ILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPK-----QIENF 289 (319)
T ss_dssp HHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HH-----HHHHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHH-----HHHHH
Confidence 555555555443 222223333556665543222111111111122333456666677777666654443 23444
Q ss_pred HHHHHHhcc
Q 020587 244 IQVAASQLS 252 (324)
Q Consensus 244 l~~l~~~L~ 252 (324)
+..+....+
T Consensus 290 v~~Lf~~~~ 298 (319)
T PF08767_consen 290 VQGLFELNN 298 (319)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcC
Confidence 444444444
No 128
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=21 Score=33.23 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=89.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH---hhhhHHh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA---YNDRMID 160 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~---L~~~m~~ 160 (324)
|..++++|..-|.--++-|-+-++.|..+.++-+.+.|.++++.+...+..-.-.|.+.++.+++.|... .|..+-|
T Consensus 116 Lp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 116 LPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 5677777776666667777777777777666666678888888888888888888999999999998876 4689999
Q ss_pred hHHHHHHHHHH--Hh----c-----CChHHHHHHHHHHHHHHHhhcChhhhH
Q 020587 161 LLDPLLVQLLL--KS----S-----QDKRFVCEAAEKALVAMTTWVSPILLL 201 (324)
Q Consensus 161 ~~d~ll~~LL~--Ka----~-----~sk~FI~e~A~~AL~amv~~vs~~~ll 201 (324)
|...+++.|=. -. | +.+.-|-+-.+.+|...-.+..|..++
T Consensus 196 fYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAfI 247 (262)
T KOG3961|consen 196 FYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAFI 247 (262)
T ss_pred HHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCcccee
Confidence 99999888731 11 1 347788888888888877777666544
No 129
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=8.6 Score=38.55 Aligned_cols=183 Identities=19% Similarity=0.139 Sum_probs=114.3
Q ss_pred HHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-h----
Q 020587 127 LVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-L---- 200 (324)
Q Consensus 127 ~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-l---- 200 (324)
.++.+|....-.|-++|.-|+.-|+..=..... .... -+.+|...+....--++--+..+|-.|...--..+ +
T Consensus 130 ~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sG-aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG 208 (550)
T KOG4224|consen 130 LLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSG-ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAG 208 (550)
T ss_pred HHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhcc-chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccC
Confidence 355566666667778888888888765211111 1111 12222222222234566777888888776544433 3
Q ss_pred -HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCC
Q 020587 201 -LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDS 279 (324)
Q Consensus 201 -l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~ 279 (324)
+|.|...++.-++.||.+++..+..+--.-...++....-+++++.+..+..|+++-+.-.|--++..|..--+-.-
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~-- 286 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR-- 286 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh--
Confidence 34677889999999999988877665432222333333467899999999999999999999888754432111000
Q ss_pred CCCCCCCCcchhHHHHHHHhcCChhhHHHHHHHhhh
Q 020587 280 APATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNI 315 (324)
Q Consensus 280 ~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~ 315 (324)
+ -.+.-.--...++.|+...|.-+.+|.=|-+|
T Consensus 287 e---iv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 287 E---IVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred H---HHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 0 00111245678889999999999999888554
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=64 Score=34.78 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcC--hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHH
Q 020587 180 VCEAAEKALVAMTTWVS--PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPE 257 (324)
Q Consensus 180 I~e~A~~AL~amv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pE 257 (324)
||.+|-..+.....+-+ +.+.+..|..-+.+.--.||-++-..|..+...+.. .+..++.+.+.|.|.+++
T Consensus 389 VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i-------~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI-------REEQLRQILESLEDRSVD 461 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee-------cHHHHHHHHHHHHhcCHH
Confidence 45555555554444322 234666677777777778888887777766665221 577888899999999999
Q ss_pred HHHHHHHHHH
Q 020587 258 SREAARTLLL 267 (324)
Q Consensus 258 vR~~AR~~l~ 267 (324)
+|++.|.++.
T Consensus 462 vRe~l~elL~ 471 (823)
T KOG2259|consen 462 VREALRELLK 471 (823)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 131
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.81 E-value=53 Score=35.71 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=93.5
Q ss_pred HHHHHHHHHhh--hhHHh----hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc--Ch---hhhHHHHhhhccCCCH
Q 020587 145 MTAADIFSAYN--DRMID----LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV--SP---ILLLPKLQPYLKNRNP 213 (324)
Q Consensus 145 ~tl~dLf~~L~--~~m~~----~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v--s~---~~ll~~L~~~~~hKNp 213 (324)
..++.+...+. ..|-. .+..++..|-.|..|++...|.-|-..+..+++-- .+ ++++......+++|+.
T Consensus 321 EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss 400 (1128)
T COG5098 321 EICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSS 400 (1128)
T ss_pred HHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhH
Confidence 34455555543 12433 35567777778999999999999999999998653 22 3477777899999999
Q ss_pred HHHHHHHHHHHhhcccccccchhh---------c---c----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 214 RIRAKASMCFSRSVPRLGVEGIKE---------Y---G----IDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 214 ~VR~~aa~~L~~~v~~~g~~~i~~---------~---~----~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.||+.+..+++.++.++.=..+.. . + +..+-+....-+.|+--|+-+.--++-.++.+-|.+.+
T Consensus 401 ~VRrnaikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd~~q~~t~le~~~n~~~ 480 (1128)
T COG5098 401 VVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSA 480 (1128)
T ss_pred HHHHHHHHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhhhhhhhhhhccccccch
Confidence 999999999999998864332211 0 1 22333333444588888888777777777778888777
Q ss_pred CC
Q 020587 278 DS 279 (324)
Q Consensus 278 ~~ 279 (324)
.+
T Consensus 481 es 482 (1128)
T COG5098 481 ES 482 (1128)
T ss_pred hh
Confidence 53
No 132
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.78 E-value=25 Score=29.42 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||..-.+=.+.|+.- . ..-.+.+++|.+.+++....|...|+..+..+.+..|..|..++
T Consensus 13 ~~~~D~~~il~icd~I~~~-~-------~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 13 LEEPDWALNLELCDLINLK-P-------NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred cCCccHHHHHHHHHHHhCC-C-------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4568999888777766644 1 12345677888999999999999999999999999998775443
No 133
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.25 E-value=49 Score=28.39 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=49.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||....+=.+.|+.= ...| .+.+++|.+-+.+.+..|..-|+..+..+.++.|..|..++
T Consensus 13 l~~~dw~~il~icD~I~~~-~~~~-------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD-ENGA-------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC-CccH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4568999888777777642 2222 45677888889999999999999999999999998876553
No 134
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=1.3e+02 Score=33.01 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH----HhhH-HHHHHHHHHHhc-CChHHHHHHHHH--------
Q 020587 121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM----IDLL-DPLLVQLLLKSS-QDKRFVCEAAEK-------- 186 (324)
Q Consensus 121 L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m----~~~~-d~ll~~LL~Ka~-~sk~FI~e~A~~-------- 186 (324)
.+..+..+...++++---..+.-|.-+|++|..-=++- ..++ +.+++.++.-+- ....-++...++
T Consensus 81 ~~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hq 160 (1005)
T KOG1949|consen 81 NINFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQ 160 (1005)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 34455566667777777788888999999876532221 1122 233444432221 111122222233
Q ss_pred -----HHHHHHhhcChhhhH-HHHhhhccCCCHHHHHHHHHHHHhhcccccccchhh---ccHHHHHHHHHHhccCCCHH
Q 020587 187 -----ALVAMTTWVSPILLL-PKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE---YGIDKLIQVAASQLSDQLPE 257 (324)
Q Consensus 187 -----AL~amv~~vs~~~ll-~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~---~~~~~ll~~l~~~L~D~~pE 257 (324)
..+.|+. ++. |.|+++++-+|..||..++.++.......|+..-.. .-+++-..-+.++|.|.-|.
T Consensus 161 kk~~qgVeeml~-----rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~ 235 (1005)
T KOG1949|consen 161 KKVRQGVEEMLY-----RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPM 235 (1005)
T ss_pred HHHhhhHHHHHH-----HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3333332 233 578999999999999999999999999888863222 13566666889999999999
Q ss_pred HHHHHHHHHH
Q 020587 258 SREAARTLLL 267 (324)
Q Consensus 258 vR~~AR~~l~ 267 (324)
+|-.|-.-+.
T Consensus 236 VRS~a~~gv~ 245 (1005)
T KOG1949|consen 236 VRSTAILGVC 245 (1005)
T ss_pred HHHHHHHHHH
Confidence 9998876554
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=75.92 E-value=88 Score=31.12 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI---DLLDPLLVQ 168 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~---~~~d~ll~~ 168 (324)
+.=.+|.+||+.+|++...+ ++.+ =..+++.++....+.+=.+...++.|+.||+-.- +++- .-+..++..
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHH
Confidence 45668999999999998763 3333 2346677777777777778888888988886543 2222 224445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhcChhh-h-----HH-HHhhhccC------CCH--HHHHHHHHHHHhhccccccc
Q 020587 169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-L-----LP-KLQPYLKN------RNP--RIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-l-----l~-~L~~~~~h------KNp--~VR~~aa~~L~~~v~~~g~~ 233 (324)
++. ..--+.+..-.++-.+..+-...+ + +. .+.++... .+. .--..++..+..+++.|.
T Consensus 156 l~d----~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-- 229 (371)
T PF14664_consen 156 LID----GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-- 229 (371)
T ss_pred HHh----ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC--
Confidence 544 211166666666666665543322 1 22 23333332 222 244556778888888883
Q ss_pred chhhccH--HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 234 GIKEYGI--DKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 234 ~i~~~~~--~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
|+..+.. -+-++.+...|.-.++++|++--.++.-
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3443311 1455566667777899999887766653
No 136
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=75.00 E-value=43 Score=27.12 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhhHHHHHHHHHH
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLLL 171 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~~d~ll~~LL~ 171 (324)
..+=.++..+|..+..+.+.....+.....+++..+-..+... .+...|+.|-..+.+.+. .++.+.++.++-.++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 3567778888999988888777777777777777666666555 677889999999999997 7788888888887776
Q ss_pred H
Q 020587 172 K 172 (324)
Q Consensus 172 K 172 (324)
.
T Consensus 104 ~ 104 (107)
T PF08064_consen 104 L 104 (107)
T ss_pred h
Confidence 4
No 137
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=74.95 E-value=45 Score=28.45 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||..-.+=.+.|+. -...| .+.+++|.+-++ +.+..|..-|+..+..+.+..|..|..++
T Consensus 14 l~~~dw~~ileicD~In~-~~~~~-------k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 14 LQSEDWGLNMEICDIINE-TEDGP-------KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred CCCcCHHHHHHHHHHHhC-CCCcH-------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 457899998888887764 12223 355667778776 46778999999999999999998887543
No 138
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.74 E-value=88 Score=30.13 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhhHHHHHHHHH
Q 020587 99 VCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLL 170 (324)
Q Consensus 99 r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~~d~ll~~LL 170 (324)
...+|..+-.....|-..+. ..-.+++..+.+.+++-++.|=|.-+.+++++|.... .....++..+++.|+
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 109 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLL 109 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Confidence 34455555554445655553 3335578899999999999999999999999997211 223444455555554
No 139
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.34 E-value=55 Score=38.26 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=87.8
Q ss_pred HhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc----cCCCHHHHHHHHHHHHhhcc
Q 020587 153 AYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL----KNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 153 ~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~----~hKNp~VR~~aa~~L~~~v~ 228 (324)
+..+.|..-+|..+..+|.-+++..--+|.-|-+||..|++.=+.-..-+.++.++ .+-+..||..+..++-+.+-
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 34577888889999999999999899999999999999887654444444444444 46678999999888776655
Q ss_pred cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
-... -.....+.+...+.|..--||..+-+.+ +.+|.+..+
T Consensus 885 ~~~e------~~~qyY~~i~erIlDtgvsVRKRvIKIl---rdic~e~pd 925 (1692)
T KOG1020|consen 885 SIPE------LIFQYYDQIIERILDTGVSVRKRVIKIL---RDICEETPD 925 (1692)
T ss_pred ccHH------HHHHHHHHHHhhcCCCchhHHHHHHHHH---HHHHHhCCC
Confidence 3211 1577888999999999999998776665 566665554
No 140
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.25 E-value=44 Score=36.33 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=70.4
Q ss_pred HHhhcC--hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 191 MTTWVS--PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 191 mv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
|+.+.. -+.++..|..-+.+-+|-+|.++...+..++..-. .....+..+...+...++|++.-||..|-+++..
T Consensus 336 m~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s---k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~Sk 412 (1128)
T COG5098 336 MVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS---KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSK 412 (1128)
T ss_pred hHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc---cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 444442 23367778899999999999999999998888621 1122377888899999999999999999999986
Q ss_pred HHHHhhhcCCCCCCCCCCCcchhHHHHHHH
Q 020587 269 LQSVYEKSHDSAPATVSDSPEMDSWENFCQ 298 (324)
Q Consensus 269 L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~ 298 (324)
|---.|.... -........|+.+..
T Consensus 413 LL~~HPF~~~-----h~~~l~~~~wek~L~ 437 (1128)
T COG5098 413 LLMRHPFASE-----HGSQLRLTLWEKNLG 437 (1128)
T ss_pred HHhcCChhhh-----ccchhhhHHHHhhcc
Confidence 6544443332 112334567776643
No 141
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.15 E-value=52 Score=37.44 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-cChhh----hHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-VSPIL----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-vs~~~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
+.++..|..+..+.+.++|..+-.....+++. .-|.+ ++......+.+||..||+.+...+...+.+..-
T Consensus 358 ~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 358 DELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 35888889999999999999999998888865 33333 444455667799999999999999999998643
No 142
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.28 E-value=66 Score=35.04 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=103.5
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhh-----hhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh----hcC
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYN-----DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT----WVS 196 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-----~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~----~vs 196 (324)
+.+-..++-.+|.|--+|...+-++|---+ .+||..++.=..-|.+...+.=--||..|..-+-.++. -++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 345667888999999999988877776544 44566666666667777788777788888777654443 245
Q ss_pred hhh---hHHHHhhhc-cCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 197 PIL---LLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 197 ~~~---ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+.- ++..|..-+ ..-...||..+...|..++..-.... -++.+++++.-.+.|.+.-||-++-.++..++.+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~----~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP----LLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh----HHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 543 444455333 45667999999988888777533322 2677888999999999999999999998877755
Q ss_pred h
Q 020587 273 Y 273 (324)
Q Consensus 273 ~ 273 (324)
-
T Consensus 333 r 333 (1005)
T KOG1949|consen 333 R 333 (1005)
T ss_pred h
Confidence 3
No 143
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.17 E-value=27 Score=41.41 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh----h---HHH-Hhhhcc
Q 020587 138 AVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----L---LPK-LQPYLK 209 (324)
Q Consensus 138 ~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----l---l~~-L~~~~~ 209 (324)
+-...|..|++.++..+|+.+..-++..+..+.+-.+.--.|++.+...++..++..+.... . +.. +...+.
T Consensus 108 q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~ll 187 (2067)
T KOG1822|consen 108 QRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLL 187 (2067)
T ss_pred HHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhh
Confidence 44567899999999999999999999888887776666567999999999998888776211 1 112 235556
Q ss_pred CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--hhcCCC----CCCC
Q 020587 210 NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY--EKSHDS----APAT 283 (324)
Q Consensus 210 hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~--~~~a~~----~~~~ 283 (324)
.++-.||-.+++|+...... |.........+.+.....+.+.+.+.++|.+--+.+..|-..- +..+.. .+..
T Consensus 188 d~s~~v~iaa~rc~~a~s~~-~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~~~~~s~~~~~~~g~~~ 266 (2067)
T KOG1822|consen 188 DRSFNVKIAAARCLKAFSNL-GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALGMHPESAVQKAKKGPFV 266 (2067)
T ss_pred hhhHHHHHHhHHHHHHHHhh-cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhccCCchhhhhhcccCCCC
Confidence 78888999999998877665 3433434468888889999999999999998887777665443 111111 1111
Q ss_pred CCCC-----cchhHHHHHHHhcCC
Q 020587 284 VSDS-----PEMDSWENFCQSKLS 302 (324)
Q Consensus 284 ~~~~-----~~~~~w~~~~~~~l~ 302 (324)
|..+ --...|..|.+..=+
T Consensus 267 pa~~~~~~~~L~~~~~~fl~~~~~ 290 (2067)
T KOG1822|consen 267 PAKDKNTREGLALSWSGFLRGGRI 290 (2067)
T ss_pred CccchhHHHHHHHHHHHHHhcchh
Confidence 2222 125788888876644
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.60 E-value=1e+02 Score=29.19 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHH-hhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587 82 TSVKTLV-AGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM 158 (324)
Q Consensus 82 ~~L~~~l-~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m 158 (324)
..+..++ ..+.++|=.-|..|+.-+=-.+....+.....+.-+...+ ++-...|.-.|+.++-||...+|..+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455444 5567776677888887776666666655555554444333 22378888899999999999999554
No 145
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=69.43 E-value=72 Score=36.64 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=89.0
Q ss_pred hhhHH-HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC---
Q 020587 121 LGDVI-PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS--- 196 (324)
Q Consensus 121 L~~iv-~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs--- 196 (324)
|+..+ ..+...+.+.-+-|-|+=++.+..|+..+|+.-.. |.|+..|+.=.-++-.-+|-+==..+.-+.-.+.
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 44433 45566677777778888888899999999865322 3345555444444322333222111111111111
Q ss_pred -hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 197 -PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 197 -~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
...++|.|+.++.+.-+.|-..+..+|..+++.- -+.+...-.+++.+.-+|.-.|.=+|.++-.++....+.++
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~---ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG---LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc---ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 3457778888887777777777777777777742 12233466677777777777777777777666654444443
No 146
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=69.13 E-value=49 Score=34.14 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=66.9
Q ss_pred hhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--hHH---HHhhhccCC-CHHHHHHHHHHHHhhccc
Q 020587 156 DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--LLP---KLQPYLKNR-NPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 156 ~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--ll~---~L~~~~~hK-Np~VR~~aa~~L~~~v~~ 229 (324)
..+++.++..++++|.|++....-||...-..|..+-..+.+.. -+| +|..+.... ++.||-.+..|+..-++|
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 46778899999999999988777777777777766666665522 344 344666655 799999999999999988
Q ss_pred ccccchhhccHHHHHHHHHHhccC
Q 020587 230 LGVEGIKEYGIDKLIQVAASQLSD 253 (324)
Q Consensus 230 ~g~~~i~~~~~~~ll~~l~~~L~D 253 (324)
++.+ ....+++.+.++++.
T Consensus 95 l~~~-----e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDE-----ERRELLPSLLKGISK 113 (501)
T ss_pred CCHH-----HHHHHHHHHHHhhcc
Confidence 8664 234555666666653
No 147
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=68.90 E-value=81 Score=33.79 Aligned_cols=128 Identities=10% Similarity=0.031 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHH---hhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--h-----HHHHhhh
Q 020587 138 AVCKTAIMTAADIFSA---YNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--L-----LPKLQPY 207 (324)
Q Consensus 138 ~Vsk~A~~tl~dLf~~---L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--l-----l~~L~~~ 207 (324)
.++++||.|+--+... |+..+ .-..+..+|++-..+...||-..+--|+.-+|---++.+ . +..|..+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 4677888887655544 44442 223344444444466678888888888776665555544 3 3467899
Q ss_pred ccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 208 LKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 208 ~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
.+.+-+.+|+.+...|..+.=.-..........+--..-+..+++|.+++|-+.+-.++.
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988877777665433333333345555667788999999999987765554
No 148
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.75 E-value=95 Score=33.86 Aligned_cols=176 Identities=17% Similarity=0.198 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+.++.+.+.+.|-..+.+|+-.+-.|....-+.-...++ ++..|.+.+.+=-|.+-++...=|.- +..+
T Consensus 37 ~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~-----iveVmsssk~~~krigylaa~qSf~~-----~tdv 106 (877)
T KOG1059|consen 37 CLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFH-----IVEVMSSSKFQQKRIGYLAASQSFHD-----DTDV 106 (877)
T ss_pred HHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhh-----hhhhhhhhhhHHHHHhHHHHHHhhcC-----CccH
Confidence 3455556666777777777777777766554333333333 34455555555444443333222211 1112
Q ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhcChh---hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 163 DPLLVQLLLKS-SQDKRFVCEAAEKALVAMTTWVSPI---LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 163 d~ll~~LL~Ka-~~sk~FI~e~A~~AL~amv~~vs~~---~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
-.++.-+++|- ...|.. ++.-||.-.-.-++|. .+-+.+..-++|--|-||.++...+.+++.+....
T Consensus 107 lmL~tn~~rkdl~S~n~y---e~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----- 178 (877)
T KOG1059|consen 107 LMLTTNLLRKDLNSSNVY---EVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----- 178 (877)
T ss_pred HHHHHHHHHHHhccCccc---hhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----
Confidence 23444445553 333433 3445555544455552 25566788888989999999999999999886443
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
+.-.++-+..-|.|.+|.|-.+|-..++.|.+--|+.-
T Consensus 179 -lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 179 -LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred -HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 44556677778999999999999999998887776654
No 149
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=68.31 E-value=1.6e+02 Score=32.05 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=88.4
Q ss_pred HHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh--hhhHHhhHH--HHHHHHHHHhcC--
Q 020587 102 ALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY--NDRMIDLLD--PLLVQLLLKSSQ-- 175 (324)
Q Consensus 102 aL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L--~~~m~~~~d--~ll~~LL~Ka~~-- 175 (324)
-++.||-++.|.+. ....+.+.+..++..+++-.+. --.+.|+|-|...- ..++...+. .++|-|-+....
T Consensus 470 LlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~e--e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~ 546 (708)
T PF05804_consen 470 LLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDSE--EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA 546 (708)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC
Confidence 34677888776432 3334455555555556554432 34556666665442 223333332 244444443322
Q ss_pred C-hHHHHHHHHHHHHHHHhhcC------hhhhHHHHhhhccCCC--HHHHHHHHHHHHhhcccccccchhhccHHHHHHH
Q 020587 176 D-KRFVCEAAEKALVAMTTWVS------PILLLPKLQPYLKNRN--PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV 246 (324)
Q Consensus 176 s-k~FI~e~A~~AL~amv~~vs------~~~ll~~L~~~~~hKN--p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~ 246 (324)
+ ...+- ++-..+.+++..=. ...+++.|..-++.|. -.+-.+++..+.+++..-......-.+ ..+...
T Consensus 547 ~~dDl~L-E~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~y 624 (708)
T PF05804_consen 547 SEDDLLL-EVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAY 624 (708)
T ss_pred CChHHHH-HHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHH
Confidence 1 22222 22233444333211 2234555555554444 566666677777666642221111111 235567
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 247 AASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 247 l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+..++.|.|+++|..+-.++..+..+-+
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 7789999999999999999987776554
No 150
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=68.14 E-value=91 Score=31.30 Aligned_cols=180 Identities=17% Similarity=0.073 Sum_probs=99.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHh--HcHHHHHHhh-hhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSI--FHKEAMLDIL-GDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYNDRM 158 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~--~h~~~l~~~L-~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~~m 158 (324)
.+.++...|-|.|-+.+..|.-..|++.. +||.+- +.+ ..+++.++..| .+-|--+--+|.=.+..++.+-....
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq-~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQ-PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCch-hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 46688888899999999999999999764 344211 111 11333333433 22232233355555555554432222
Q ss_pred HhhHH-HHHHHHHHHhcCChHHHHHHHHHHHHH-----------HHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhh
Q 020587 159 IDLLD-PLLVQLLLKSSQDKRFVCEAAEKALVA-----------MTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRS 226 (324)
Q Consensus 159 ~~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~a-----------mv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~ 226 (324)
.--+| ..+|.++....++++-|+|.+-.||.- +.++.....++..|.....|- .-+|-. .-.|+++
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i-smlRn~-TWtLSNl 228 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI-SMLRNA-TWTLSNL 228 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH-HHHHHh-HHHHHHh
Confidence 11122 256777777888889999999988863 333334444555555333222 233433 3445555
Q ss_pred cccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 227 VPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 227 v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
+.--.+. -.-..+...++.+++++.-.++|+-.-|--++
T Consensus 229 cRGknP~-P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 229 CRGKNPP-PDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred hCCCCCC-CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 5432221 11124667777777777777777665554333
No 151
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.09 E-value=15 Score=30.91 Aligned_cols=108 Identities=22% Similarity=0.124 Sum_probs=59.6
Q ss_pred hHHhhHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc-cCCCHHHHHHHHHHHHhhccccccc
Q 020587 157 RMIDLLDPLLVQLLLKSS--QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~--~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
.||.|...+....|.=.. -+.+|=+|-|.+--+ ..-+++..|...+ ++.++.+-+-+|-=|...++....
T Consensus 5 sfdeY~~El~sg~L~WSP~H~se~FW~ENa~kf~~------~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~- 77 (119)
T PF11698_consen 5 SFDEYLSELESGHLEWSPVHKSEKFWRENADKFEE------NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN- 77 (119)
T ss_dssp HHHHHHHHHHHT-----GGGG-HHHHHHHSGGGSS------GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-
T ss_pred cHHHHHHHHhcCCccccCCCCCccHHHHHHHHHHH------cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-
Confidence 466677777766664432 225677776654311 2233555555555 344666666666666666665422
Q ss_pred chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
+..--..-..-..+..+++..++|||+.|-.+++.|+.
T Consensus 78 gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 78 GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11111112234466788999999999999999987764
No 152
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.80 E-value=1.1e+02 Score=33.63 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL 199 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ 199 (324)
++..|.+.+..-|++.--.++-.|+.++|..+...+. .-+.++..|+....+...-|-.++-..+..|++.-+...
T Consensus 389 ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 389 NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 3456777777777764446999999999988877663 456788888888877777777777777887777655544
Q ss_pred --hHHHHhhhcc-CCCHHHHHHH
Q 020587 200 --LLPKLQPYLK-NRNPRIRAKA 219 (324)
Q Consensus 200 --ll~~L~~~~~-hKNp~VR~~a 219 (324)
+|..|..-+. -+-|.-|+.+
T Consensus 465 ~~ii~~La~lldti~vp~ARA~I 487 (968)
T KOG1060|consen 465 LEILFQLARLLDTILVPAARAGI 487 (968)
T ss_pred HHHHHHHHHHhhhhhhhhhhcee
Confidence 5555554443 3455555544
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.40 E-value=1.3e+02 Score=29.54 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=85.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcH----HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHK----EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~----~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.++..+...+.+-..+|..+++.|...|+ +++..++..+.....+.+.+-+=..-|.++..++||...=.
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~------ 241 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS------ 241 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG------
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh------
Confidence 45666778899999999999999988886 45667788888889999999999999999999999864321
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc-cc---chhh
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG-VE---GIKE 237 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g-~~---~i~~ 237 (324)
-...|..+++...-|..+-.-+++++..||-.+.-.+--.|.+=. +. .+..
T Consensus 242 -------------------------n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 242 -------------------------NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILI 296 (335)
T ss_dssp -------------------------GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHH
T ss_pred -------------------------HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 012344444444444444444445555555444333333332200 01 1222
Q ss_pred ccHHHHHHHHHHhccCC
Q 020587 238 YGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 238 ~~~~~ll~~l~~~L~D~ 254 (324)
...++|+.-+..+..|.
T Consensus 297 ~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 297 KNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 35777777777777776
No 154
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=1.4e+02 Score=29.89 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhHcHHHHH-----HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHH-h-hHHHHHHHH
Q 020587 99 VCEALNNVRRLSIFHKEAML-----DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMI-D-LLDPLLVQL 169 (324)
Q Consensus 99 r~eaL~~LRrLa~~h~~~l~-----~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~-~-~~d~ll~~L 169 (324)
-.+.+.+|.+|+.. .++.. +-|..+++.+..+=..-.-.++|++|.++..|+.. .++.+- . -+|. +-+|
T Consensus 259 L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~-ii~l 336 (461)
T KOG4199|consen 259 LVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK-IITL 336 (461)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH-HHHH
Confidence 44555666666654 22222 22333333333311112226777777777766654 233332 2 2444 4455
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhhcChh--hhHH-----HHhhhcc-C-CCHHHHHHHHHHHHhhcccccc--cchhhc
Q 020587 170 LLKSSQDKRFVCEAAEKALVAMTTWVSPI--LLLP-----KLQPYLK-N-RNPRIRAKASMCFSRSVPRLGV--EGIKEY 238 (324)
Q Consensus 170 L~Ka~~sk~FI~e~A~~AL~amv~~vs~~--~ll~-----~L~~~~~-h-KNp~VR~~aa~~L~~~v~~~g~--~~i~~~ 238 (324)
+.+.++ +..|.+++-.++..++-..+.. +.+. .....++ | +..+|.+.+|..+-+++-+-.. ..+..+
T Consensus 337 ~~~h~~-~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 337 ALRHSD-DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHcCC-ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 555555 5678888888888888776443 3443 1223333 4 5568999999999888887433 345667
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
|.+.|+..+.+ .++.+|..|+-++.
T Consensus 416 GiE~Li~~A~~----~h~tce~~akaALR 440 (461)
T KOG4199|consen 416 GIEKLIRTAKA----NHETCEAAAKAALR 440 (461)
T ss_pred cHHHHHHHHHh----cCccHHHHHHHHHH
Confidence 89999988774 57889999998875
No 155
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.68 E-value=18 Score=39.01 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
....+..+++-..+.+--||.-|-+++..+--.-=...+..-|..++++++|-+|..++.++..+...- .+.. .-.
T Consensus 84 a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~---~~~ 159 (734)
T KOG1061|consen 84 AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLV---EDS 159 (734)
T ss_pred HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhc---ccc
Confidence 455667777778888999988777665432111111123344778999999999999999988776642 3212 234
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
.+++.+..++.|.+|.|=..|-.++..+++.-
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 57778888888999999998887776444443
No 156
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.21 E-value=61 Score=31.15 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhhHHHHHHHHHH
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLLL 171 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~~d~ll~~LL~ 171 (324)
+.--+.|+.||-+||.+..-|+ +..+.+.-.+= |..-|. +++..|| ..+.. -++.|..
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~~----------i~~i~ka~~d~-s~llkh------e~ay~LgQ~~~~~----Av~~l~~ 74 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPAA----------IKAITKAFIDD-SALLKH------ELAYVLGQMQDED----AVPVLVE 74 (289)
T ss_pred cHHHHHHHHHHHhhhccCChHH----------HHHHHHhcccc-hhhhcc------chhhhhhhhccch----hhHHHHH
Confidence 3446678888888888765443 33333433222 333222 3333343 22233 3444444
Q ss_pred HhcCC--hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587 172 KSSQD--KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFS 224 (324)
Q Consensus 172 Ka~~s--k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~ 224 (324)
..++. --.||.+|..||.++. .+.+++.+..+.++--..||..+-..+.
T Consensus 75 vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~~dp~~~v~ETc~lAi~ 125 (289)
T KOG0567|consen 75 VLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYIKDPCKEVRETCELAIK 125 (289)
T ss_pred HhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHhcCCccccchHHHHHHH
Confidence 44443 3588999999999876 3446667777777777778776444333
No 157
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.01 E-value=1.3e+02 Score=28.79 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH----HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML----DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YND 156 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~----~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~ 156 (324)
.+..++..++++||.-...|+..+-.|+.+.+.... ..+..+...+...+++-.+.+...|+.+++.|.+. ++.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 577888888889999999999999999886543332 23444444444444445556668889999998755 344
Q ss_pred hH--HhhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHh--------hcChhhhHHHHhhhcc--CCCHHHHHHHHHHH
Q 020587 157 RM--IDLLDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTT--------WVSPILLLPKLQPYLK--NRNPRIRAKASMCF 223 (324)
Q Consensus 157 ~m--~~~~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~--------~vs~~~ll~~L~~~~~--hKNp~VR~~aa~~L 223 (324)
.| ...+..+...|-.... ..+.-+.-.-...+..+.- .+....+++.|..-++ .|-..||-. ...+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~-la~l 264 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS-LAIL 264 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH-HHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHH-HHHH
Confidence 33 2233333332211112 2233333333444443322 2222336666554443 344444443 3445
Q ss_pred Hhhcccc
Q 020587 224 SRSVPRL 230 (324)
Q Consensus 224 ~~~v~~~ 230 (324)
-+++..-
T Consensus 265 ~Nl~~~~ 271 (312)
T PF03224_consen 265 RNLLSKA 271 (312)
T ss_dssp HHTTSSS
T ss_pred HHHHhcc
Confidence 5555543
No 158
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.85 E-value=1.5e+02 Score=32.38 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=57.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM 158 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m 158 (324)
..+++..|++..=-.|..|+..+.++....|+-+.+.++. +..-+.++-.+|.-+|...+.+|++-=.+..
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~Fpr----L~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPR----LVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHH----HHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 4588999988766677789999999877778877776655 5678899999999999999999988754443
No 159
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.19 E-value=90 Score=33.43 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=79.5
Q ss_pred HHHHH-hhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-----hh----hHHHHhhhccCCCHHHHHH
Q 020587 149 DIFSA-YNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-----IL----LLPKLQPYLKNRNPRIRAK 218 (324)
Q Consensus 149 dLf~~-L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-----~~----ll~~L~~~~~hKNp~VR~~ 218 (324)
+|++- ....|.-+++.++...|..=. +..+.+-.-+-|..++.+--+ .+ .+..+.+|+.+|-..||..
T Consensus 33 ~l~~~~t~~~f~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r 110 (885)
T COG5218 33 ELMEMLTAHEFSEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKR 110 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHH
Confidence 34433 346677777777777763322 234444444555566654321 22 3446889999999999999
Q ss_pred HHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 219 ASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 219 aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
+++.|..+....+. +-+.-...|+.-+.+-+-|+-+-||..|-.++..++.
T Consensus 111 ~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 111 SLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 99999888887655 2221135566777778889999999999999987773
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.14 E-value=1.9e+02 Score=30.57 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=93.7
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM 158 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m 158 (324)
.-+.....+++..... =+.+.-|-..|-+..++.|++-. +.+.+++..+.|=-+.|=+.|+.-+-.+++.=+..
T Consensus 20 ~~~~~y~~il~~~kg~-~k~K~Laaq~I~kffk~FP~l~~----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~- 93 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGS-PKEKRLAAQFIPKFFKHFPDLQE----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH- 93 (556)
T ss_dssp GGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHH----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--
T ss_pred cCHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-
Confidence 3445677788777654 33444455666666666665443 34556777788888888899988777777654433
Q ss_pred HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc---cCCCHHHHHHHHHHHHhhcccccccch
Q 020587 159 IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL---KNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 159 ~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~---~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
+..+.-+|......+..--.+.+..+|..+...= |.-.|..|...+ ..-...+|.++..+|..-+..++.+-+
T Consensus 94 ---v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 94 ---VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp ---HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred ---HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 3333334444444445566677777777665543 333333332222 234568999999999888877766644
Q ss_pred hh-c-cHHHHHHHHHHhccCCC
Q 020587 236 KE-Y-GIDKLIQVAASQLSDQL 255 (324)
Q Consensus 236 ~~-~-~~~~ll~~l~~~L~D~~ 255 (324)
.. . .-+.++..+.+.|.|=.
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVT 191 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVT 191 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--
T ss_pred hchHHHHHHHHHHHHHHHHhcc
Confidence 42 1 24566777888888833
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.93 E-value=56 Score=34.45 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM 117 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l 117 (324)
+.++...++..+++|=.-|+.|+..|-.+++.+|+++
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 4578888888899999999999999999999887655
No 162
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=64.89 E-value=56 Score=26.60 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=57.7
Q ss_pred hhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 198 ILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 198 ~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.+++|.+..+++ .+++..|..+-..+..+..+..-. ..-++.+++.+.+.....+. .+.++..|..+|...
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~-----~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETV-----QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchh-----HHHHHHHHHHHHHcc
Confidence 458899999998 889999999888888877765332 33467777777776666655 455666666777544
Q ss_pred CCCCCCCCCCCcchhHHHHHHH
Q 020587 277 HDSAPATVSDSPEMDSWENFCQ 298 (324)
Q Consensus 277 a~~~~~~~~~~~~~~~w~~~~~ 298 (324)
+ ..+......++.|+.
T Consensus 77 ~------~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 77 E------NVDSLPRKVFKALLK 92 (121)
T ss_pred c------ccccCCHHHHHHHHc
Confidence 3 222334555555554
No 163
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=22 Score=38.79 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=74.0
Q ss_pred hhHHHHHHHHcc-CcchH---HHHHHHHHHHHHHHH-hhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC
Q 020587 122 GDVIPLVVKSLK-NPRSA---VCKTAIMTAADIFSA-YNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS 196 (324)
Q Consensus 122 ~~iv~~l~~~vk-sLRS~---Vsk~A~~tl~dLf~~-L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs 196 (324)
+++...+...++ ||+|. |+-.|+.+++.|+.. +-+++.|+++.+ ....+.+||.-|.-|+.-++..++
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~L-------l~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERL-------LQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHH-------HhCCCHHHHHHHHHHHHHHHHcCc
Confidence 566666766665 57775 566666666655543 333334444433 334688999999999999888876
Q ss_pred hhh--hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHh
Q 020587 197 PIL--LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQ 250 (324)
Q Consensus 197 ~~~--ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~ 250 (324)
..- .++.-..-+.+|+.-|-..+..++..++++ +++.+..| -.+.++..+...
T Consensus 175 ~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 175 DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVKILKQL 231 (866)
T ss_pred hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 543 445555667778877777776666666665 23334333 244444444443
No 164
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.38 E-value=1.3e+02 Score=29.57 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--hHHHHhhhcc----CCCHHH
Q 020587 142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--LLPKLQPYLK----NRNPRI 215 (324)
Q Consensus 142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--ll~~L~~~~~----hKNp~V 215 (324)
.++..+--|...-...+.+.+..++..+.+-..+-..-|+..|..|+..|+++.+..- .+..+...+- .-|..|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556666666666788899999999999999999999999999999999998875432 3333333333 445677
Q ss_pred HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 020587 216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTL 265 (324)
Q Consensus 216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~ 265 (324)
|.-+-..|...+....+ .++++.+..++.-.+|-+|..+-.+
T Consensus 187 reda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 187 REDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred HHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcc
Confidence 88888888777775433 3344444444555566666555433
No 165
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=63.44 E-value=2.2e+02 Score=30.78 Aligned_cols=96 Identities=20% Similarity=0.109 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhH-HHHHHHHccCcc--hHHHHHHHHHHHHHHHH--hhhhHHhhHHHHHHHH
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDV-IPLVVKSLKNPR--SAVCKTAIMTAADIFSA--YNDRMIDLLDPLLVQL 169 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~i-v~~l~~~vksLR--S~Vsk~A~~tl~dLf~~--L~~~m~~~~d~ll~~L 169 (324)
.|+.++-||+.||=+.+||+-......++. -..+...+..+. .+-.-.++.|+.-+|.. ...-|...++.++..+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV 636 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence 355599999999999999875544333222 222233333344 45555566666666665 1244555677777777
Q ss_pred HHHhc-CChHHHHHHHHHHHHH
Q 020587 170 LLKSS-QDKRFVCEAAEKALVA 190 (324)
Q Consensus 170 L~Ka~-~sk~FI~e~A~~AL~a 190 (324)
...-. +.+.+-..-|.-+|+.
T Consensus 637 ~~~~s~~~knl~ia~atlaln~ 658 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNY 658 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHH
Confidence 76644 4345555555666663
No 166
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=62.69 E-value=11 Score=25.51 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Q 020587 240 IDKLIQVAASQLSDQLPESREAARTL 265 (324)
Q Consensus 240 ~~~ll~~l~~~L~D~~pEvR~~AR~~ 265 (324)
.+.+.+.+.+.+.|.+|.||++|-.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 56899999999999999999998654
No 167
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=62.66 E-value=1.7e+02 Score=31.90 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHHHHHhHcH---HHHHHhhhhHHHHHHHHccCc--chHHHHHHHHHHHHHHHHhhhhH-
Q 020587 86 TLVAGLD-SKDWVVVCEALNNVRRLSIFHK---EAMLDILGDVIPLVVKSLKNP--RSAVCKTAIMTAADIFSAYNDRM- 158 (324)
Q Consensus 86 ~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~---~~l~~~L~~iv~~l~~~vksL--RS~Vsk~A~~tl~dLf~~L~~~m- 158 (324)
.+...+. .++++-.+|+|-.|..|....- .++. =..+++.+...++.- ...+.-++++.+|.++..-....
T Consensus 494 ~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~--~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l 571 (708)
T PF05804_consen 494 DLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQ--EYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL 571 (708)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHH--hCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 3333343 3477788888888888865321 1221 134566666666522 33688888888887775433221
Q ss_pred --HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC-h------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 159 --IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS-P------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 159 --~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs-~------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
..-+-..+-.||+.-+++..||.+-.-. +..|+.|-. - ..+...|..-+.+||+.||+.+-.+|..+.+
T Consensus 572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~-f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 572 LAKSGLIPTLIELLNAKQEDDEIVLQILYV-FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHhCChHHHHHHHHHhhCchHHHHHHHHHH-HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1122333334444445556666554432 222232211 1 1233456778889999999999998887776
No 168
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.82 E-value=19 Score=35.56 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=52.9
Q ss_pred hhhccCCCHHHHHHHHHHHHhhccccccc--chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 205 QPYLKNRNPRIRAKASMCFSRSVPRLGVE--GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 205 ~~~~~hKNp~VR~~aa~~L~~~v~~~g~~--~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
..+++|.++.+|..++..|..|++.-... .+.+ +++.+|+.++. .|.+-++|..|-.++..|.+.+....
T Consensus 130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 34999999999999999999999975332 1222 34666665555 89999999999999888887776443
No 169
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=61.11 E-value=2e+02 Score=29.35 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=83.7
Q ss_pred HHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHH
Q 020587 103 LNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVC 181 (324)
Q Consensus 103 L~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~ 181 (324)
|..+.-+.+|+...+. ..+..++..+...+++..+..--.+|..+=|..-.+|.-=..-+..++..|=.-.+.. =++
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~ 232 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLC 232 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccc
Confidence 3333444444432222 3455566666666665555554455555555555555222233333333332222221 456
Q ss_pred HHHHHHHHHHHhhcChhhhHHHHhhhc------cCCCHHHHHHHHHHHHhhcccccccchhh--ccHHHHHHHHHHhccC
Q 020587 182 EAAEKALVAMTTWVSPILLLPKLQPYL------KNRNPRIRAKASMCFSRSVPRLGVEGIKE--YGIDKLIQVAASQLSD 253 (324)
Q Consensus 182 e~A~~AL~amv~~vs~~~ll~~L~~~~------~hKNp~VR~~aa~~L~~~v~~~g~~~i~~--~~~~~ll~~l~~~L~D 253 (324)
+.+-+++.-++.+=.....+..|...+ ..+++.+-+.+..++..++-..|..++.. +....+++.+...+.-
T Consensus 233 ~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 667777777775444444444333222 35778888888899988888776676655 4455688888888875
Q ss_pred CCH
Q 020587 254 QLP 256 (324)
Q Consensus 254 ~~p 256 (324)
.++
T Consensus 313 ~~~ 315 (464)
T PF11864_consen 313 NSP 315 (464)
T ss_pred CCC
Confidence 555
No 170
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=61.05 E-value=99 Score=25.91 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=49.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||..-.+=.+.|+.= ... =.+.+++|.+-+++.+..|..-|+..+..+.+..|..|..++
T Consensus 13 l~~~dw~~~l~icD~i~~~-~~~-------~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 13 LLEEDWELILEICDLINST-PDG-------PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred CCCcCHHHHHHHHHHHhCC-Ccc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4578999888777766543 122 245667788999999999999999999999999998876543
No 171
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=60.62 E-value=1.1e+02 Score=26.47 Aligned_cols=124 Identities=18% Similarity=0.122 Sum_probs=79.2
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcCh
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSP 197 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~ 197 (324)
.++.++..+...+.+-...---.|+..+..++..-+ ..|..+....+..|+....+ +...+.+.+-.+|..|+..+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--
Confidence 566666677777777555555678888888888874 55667778888888877754 45666677777666655433
Q ss_pred hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
..+..-.|.-+. -.+.++++.+.++++| ++....+-.++..+...|+-
T Consensus 100 -----------~~~p~l~Rei~t-----------------p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 100 -----------RGKPTLTREIAT-----------------PNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred -----------cCCCchHHHHhh-----------------ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 233322332211 1155566666666666 66777777788877777763
No 172
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.40 E-value=1.6e+02 Score=28.13 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhh---hhHHhhH----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYN---DRMIDLL----DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI 198 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~---~~m~~~~----d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~ 198 (324)
..++..+ +-|..+.+..+..+.||+..-. ..|..+. +....++++-......||...+...|..++.+.+..
T Consensus 61 l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 3444444 6799999999999999998854 2232222 136788887666668999999999999988876442
Q ss_pred ------hhHHHHhhhcc----CCCHHHHHHHHHHHHhhcccccccch--hhccHHHHHHHHHHhc---cCCCHHHHHHHH
Q 020587 199 ------LLLPKLQPYLK----NRNPRIRAKASMCFSRSVPRLGVEGI--KEYGIDKLIQVAASQL---SDQLPESREAAR 263 (324)
Q Consensus 199 ------~ll~~L~~~~~----hKNp~VR~~aa~~L~~~v~~~g~~~i--~~~~~~~ll~~l~~~L---~D~~pEvR~~AR 263 (324)
..++.+...++ +.+..+...+..+|..++..-.-+.. ...++..+.+.+.... +-.+...-+++=
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 34554444443 44556667777888877764222211 1124555555443222 223344555555
Q ss_pred HHHHHH
Q 020587 264 TLLLEL 269 (324)
Q Consensus 264 ~~l~~L 269 (324)
-++|.|
T Consensus 220 l~lWlL 225 (312)
T PF03224_consen 220 LCLWLL 225 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555533
No 173
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.24 E-value=1.7e+02 Score=35.34 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHH-----HHHHhhhhHHHHHHHHccCc--------------------------chHHHH
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKE-----AMLDILGDVIPLVVKSLKNP--------------------------RSAVCK 141 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~-----~l~~~L~~iv~~l~~~vksL--------------------------RS~Vsk 141 (324)
+++=+-|-.||+.|-++...|.. +-...+..++..+...++.. =+.-+.
T Consensus 1358 D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~ 1437 (1780)
T PLN03076 1358 DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCT 1437 (1780)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHH
Confidence 45666788899999888776643 32234555555554444310 056788
Q ss_pred HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 020587 142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW 194 (324)
Q Consensus 142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~ 194 (324)
.|+..+.+||..|=+.+.+.++.++..|.....+.|..++.-+..||..++..
T Consensus 1438 ~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1438 LALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888888888999988888888766544
No 174
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.24 E-value=3e+02 Score=30.84 Aligned_cols=195 Identities=16% Similarity=0.115 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHH--ccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587 96 WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKS--LKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS 173 (324)
Q Consensus 96 W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~--vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka 173 (324)
|++-...+-.+..++.+-.+...+.+..... +... +.-++-++++++..+++-+...++.+- .++...++.|++-.
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~-~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~L 558 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFE-TSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGL 558 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHH-hccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHh
Confidence 9988888888888887654333332322222 1222 234588899999999999999988652 23445555666555
Q ss_pred cCChHHHHHHHHHHHHHHHhhcChhh---hHHH------HhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 174 SQDKRFVCEAAEKALVAMTTWVSPIL---LLPK------LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 174 ~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~------L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
.+++ ..+.+..+|..+|+.|...- .-+. +..-..+| +-.|.+....+-.++.+..++.+..+ +.+|+
T Consensus 559 h~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~-~S~~~klm~sIGyvls~~~pEe~~ky-l~~li 634 (982)
T KOG2022|consen 559 HNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAK-DSDRLKLMKSIGYVLSRLKPEEIPKY-LMKLI 634 (982)
T ss_pred cCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccC-chHHHHHHHHHHHHHHhccHHhHHHH-HHHHH
Confidence 5443 33555666888888875432 2221 12222333 35677777777777777777666555 44444
Q ss_pred HHHHHhccC------CCHHHHHHHHHHHHHHHHHhhhcCCCCC--CCCCCCcchhHHHHH
Q 020587 245 QVAASQLSD------QLPESREAARTLLLELQSVYEKSHDSAP--ATVSDSPEMDSWENF 296 (324)
Q Consensus 245 ~~l~~~L~D------~~pEvR~~AR~~l~~L~~~~~~~a~~~~--~~~~~~~~~~~w~~~ 296 (324)
..+...++- .+||-|.+.--.+.++...|..-.-... .+.+..++.+.|+.|
T Consensus 635 n~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~ 694 (982)
T KOG2022|consen 635 NPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQF 694 (982)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccC
Confidence 433333322 2455555554455556666643322111 123334566777777
No 175
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.16 E-value=1.2e+02 Score=26.30 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=63.2
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHh
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQ 205 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~ 205 (324)
..+.++++|-+.-+-|.|+.++...+.. +.+.+.++..+-.-..+.-.||+.+...+|..+... .|.+++..+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 4678899999999999999888776655 556777777777777778999999999999998887 7777888776
Q ss_pred hhccC
Q 020587 206 PYLKN 210 (324)
Q Consensus 206 ~~~~h 210 (324)
.....
T Consensus 182 ~~~~~ 186 (197)
T cd06561 182 KNGLS 186 (197)
T ss_pred HHHHh
Confidence 54433
No 176
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=58.73 E-value=1.6e+02 Score=27.66 Aligned_cols=189 Identities=15% Similarity=0.128 Sum_probs=113.0
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 83 SVKTLVAGLD-SKDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 83 ~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
.++.++..|+ ++|=..+..++..+-..+.|- .+++ ..++ .+..|...+.++-.+|-..|+.++..|.....+..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~I-r~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~- 89 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDII-RDLG-GISLIGSLLNDPNPSVREKALNALNNLSVNDENQE- 89 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHH-HHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-
Confidence 4677777776 456666666776666665432 2222 1222 35678889999999999999999998877654222
Q ss_pred hhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc-
Q 020587 160 DLLDPLLVQLLLKS--SQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV- 232 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka--~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~- 232 (324)
.+...++.++..+ ..-+.++..++-++|..|...-... +.++.+.+-+.+-|..+|..+.+.|.++-+.-..
T Consensus 90 -~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~ 168 (254)
T PF04826_consen 90 -QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMT 168 (254)
T ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHH
Confidence 2333444444443 2347889899999998875332222 2455566777788889999999998888775221
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
..+... +.+-..+.=|-.+.+.|.-..+-.++.-+...+.+.+
T Consensus 169 ~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~ 211 (254)
T PF04826_consen 169 RELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEA 211 (254)
T ss_pred HHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccc
Confidence 112211 1122222222233345555555555555555555553
No 177
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=58.59 E-value=2.7e+02 Score=32.54 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHH--
Q 020587 92 DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQL-- 169 (324)
Q Consensus 92 ~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~L-- 169 (324)
....|+.++.+|.-+|.....-.+++...+..+.+.++.-+.+.--.|...|..++.-....+.+.+...+..++..+
T Consensus 177 ~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~ 256 (1549)
T KOG0392|consen 177 RQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWS 256 (1549)
T ss_pred cCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHH
Confidence 356899999999999986555566666777778888888887777777777777777766666444443333333322
Q ss_pred -----HHHhcCChHHHHHHHHHH------HHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc-hhh
Q 020587 170 -----LLKSSQDKRFVCEAAEKA------LVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG-IKE 237 (324)
Q Consensus 170 -----L~Ka~~sk~FI~e~A~~A------L~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~-i~~ 237 (324)
+. ++.++..++.-...- ++...+.-....++|.+++.+.|-=..+|..+...+..+++.-+... +..
T Consensus 257 ~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~ 335 (1549)
T KOG0392|consen 257 FLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQI 335 (1549)
T ss_pred HHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccch
Confidence 22 333333333322221 22222222223577888888888888899999999998888643332 111
Q ss_pred ccHHHHHHHH-HHhccCCCHHHHHHH
Q 020587 238 YGIDKLIQVA-ASQLSDQLPESREAA 262 (324)
Q Consensus 238 ~~~~~ll~~l-~~~L~D~~pEvR~~A 262 (324)
.....++..+ ..++-+..+|.=..-
T Consensus 336 ~~l~~~~r~ifq~ll~e~~~e~L~~~ 361 (1549)
T KOG0392|consen 336 RILGKLFRKIFQILLLESFNEILDLS 361 (1549)
T ss_pred hhhHHHHHHHHHHHHhCCcHHHHHhh
Confidence 1222233222 345566666654433
No 178
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=58.45 E-value=2.9e+02 Score=30.41 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH-HHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 020587 121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP-LLVQLLLKSSQDKRFVCEAAEKALVAMTTW 194 (324)
Q Consensus 121 L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~-ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~ 194 (324)
++.++..|.+++++.--.|=|+|..|+..||+.=++-. -+. .+..+-..+.++.-.+...|-.+|..+..-
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~---~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY---HELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh---hcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 44555666777777777777777777777765422221 122 222333334566666666666666665544
No 179
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=2e+02 Score=28.55 Aligned_cols=197 Identities=21% Similarity=0.144 Sum_probs=125.5
Q ss_pred CCHHHHHHH-HHhhcC--CCCHHHHHHHHHHHHHHHhH--cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH
Q 020587 78 EDIDTSVKT-LVAGLD--SKDWVVVCEALNNVRRLSIF--HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS 152 (324)
Q Consensus 78 ~dpe~~L~~-~l~~L~--s~dW~~r~eaL~~LRrLa~~--h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~ 152 (324)
..+...++. ....+. +.+=+.+.+||+.|+-++.. |..-+ ..++.+.+.+. .+++.-+.|=..|...++..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl-~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~q 153 (342)
T KOG2160|consen 76 KVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDL-ISLGGLVPLLG-YLENSDAELRELAARVIGTAVQ 153 (342)
T ss_pred hhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhH-hhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHh
Confidence 344455555 344444 45899999999999999642 22222 13444444444 9999999999999999999999
Q ss_pred HhhhhHHhhHH-HHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhcChhh--hHH-----HHhhhccC--CCHHHHHHHHH
Q 020587 153 AYNDRMIDLLD-PLLVQLLLKS-SQDKRFVCEAAEKALVAMTTWVSPIL--LLP-----KLQPYLKN--RNPRIRAKASM 221 (324)
Q Consensus 153 ~L~~~m~~~~d-~ll~~LL~Ka-~~sk~FI~e~A~~AL~amv~~vs~~~--ll~-----~L~~~~~h--KNp~VR~~aa~ 221 (324)
.=.+.-...++ .-+..|+..+ .++..-++..|--|+.+.+.+-.|.. .++ .|...++. .+.+.+++++.
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~ 233 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALF 233 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHH
Confidence 86555444332 1445555544 34455566667777777777765543 222 35666766 77888999999
Q ss_pred HHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 222 CFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 222 ~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
++..+++..-...- ......+...+..++.--..++++++-..+..+-..+....
T Consensus 234 Ll~~Ll~~~~s~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 234 LLSLLLQEDKSDED-IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHHHHHhhhhhhh-HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 99999886543311 11123334444555566677888888777776666655444
No 180
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.37 E-value=1.2e+02 Score=25.92 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+.++||....+=.+.|+.= .. .=.+.+++|.+-+++.+..|..-|+..+..+.+..|..|..+
T Consensus 17 l~~~dw~~ileicD~In~~-~~-------~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 17 LGEPDLASILEICDMIRSK-DV-------QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cCccCHHHHHHHHHHHhCC-CC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4567999987777777632 11 234677888899999999999999998888888888776544
No 181
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.12 E-value=62 Score=25.67 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 201 LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 201 l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
+......+.+.-+.||+.....|..+++.-. ......+.++......|.|.++=+=-.|=+++..|-..|++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3445566778889999999999999999755 112347899999999999999999999999999998888864
No 182
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.5e+02 Score=32.24 Aligned_cols=110 Identities=23% Similarity=0.199 Sum_probs=68.4
Q ss_pred CHHHH---HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh
Q 020587 79 DIDTS---VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN 155 (324)
Q Consensus 79 dpe~~---L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~ 155 (324)
.|+.+ +..++..-++++|.-|.-|+.++-.+-. + ...+-+...+.+++++--+-|=|.|..|++-+|.-=+
T Consensus 80 ~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~----~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 80 KPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV--D----KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred CchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee--h----HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 55543 4567777788999888877776655421 1 2344556677788888888888888877777765433
Q ss_pred hhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC
Q 020587 156 DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS 196 (324)
Q Consensus 156 ~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs 196 (324)
+...+ ..++..|=....+++..|...|-.||..|.+.-+
T Consensus 154 ~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 154 DLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 22221 1122222222337777888888888888776543
No 183
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.11 E-value=2.9e+02 Score=32.78 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh---H----HhhHHH
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR---M----IDLLDP 164 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~---m----~~~~d~ 164 (324)
.+|=+-|..||..+-+++..||..+. ..+..+...++..-.+.+- .=+++++-+...|-.+ | ..+-..
T Consensus 1236 ~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~----~ki~~l~n~~~yL~eee~~l~~~~~~w~~~ 1311 (1692)
T KOG1020|consen 1236 DKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIK----SKIQLLQNLELYLLEEEKKLRNKGKNWTKS 1311 (1692)
T ss_pred hhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHH----HHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 55677899999999999999998875 4556666656655544432 2234444444443311 1 111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
==...++...+++.-..... ...+++ +.-++.|...+-|++-++|..+.+.+..++..-=++ .-..+
T Consensus 1312 ~k~edlkem~~v~sg~~s~~--~~~~i~-----Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh------P~~cv 1378 (1692)
T KOG1020|consen 1312 NKSEDLKEMLDVSSGMGSSD--GVSAIM-----QLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH------PVHCV 1378 (1692)
T ss_pred hhHHHHHhhccccccccccc--chHHHH-----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC------ccchh
Confidence 11112222222211111100 001111 234566666777999999999988888777652222 34567
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 245 QVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 245 ~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
+.+-.+-+|..++.|.-|-.++.-+++-|+..
T Consensus 1379 PtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gf 1410 (1692)
T KOG1020|consen 1379 PTLIALETDPSQAIRHVADELLKEIDEKYEGF 1410 (1692)
T ss_pred hhheeecCChHHHHHHHHHHHHHHHHHhhHHH
Confidence 77778889999999999999988777777643
No 184
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.29 E-value=2.1e+02 Score=28.15 Aligned_cols=77 Identities=10% Similarity=0.020 Sum_probs=53.9
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH----HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhh
Q 020587 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM----IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILL 200 (324)
Q Consensus 125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m----~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~l 200 (324)
.-.+.+.+.+..--|+-.|..|+.+|+..-+.-. ....|......-+....+|-+.+-.+-+-|..++..=+...+
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v 245 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV 245 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH
Confidence 3446788999999999999999999998754333 344556666444445666888888888888887655444444
Q ss_pred H
Q 020587 201 L 201 (324)
Q Consensus 201 l 201 (324)
+
T Consensus 246 m 246 (335)
T PF08569_consen 246 M 246 (335)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=56.05 E-value=56 Score=28.40 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=46.1
Q ss_pred HHHHHHccCcc-hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587 126 PLVVKSLKNPR-SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT 192 (324)
Q Consensus 126 ~~l~~~vksLR-S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv 192 (324)
..+...++|.. |.-=..+++++..+|+.+|...-+|++.++|.++..+......++|..-.-|..++
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444444322 22222577888899999998889999999999999887655566666555555444
No 186
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.99 E-value=1.2e+02 Score=33.22 Aligned_cols=137 Identities=16% Similarity=0.091 Sum_probs=84.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH-hhhhHHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA-YNDRMIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~-L~~~m~~~~d~ 164 (324)
++...|++..+.++.=|.-.+.-|...+.++ ++.++..|.+-+.+-+..-..-|+.|++-+-.. ++..+.+++.
T Consensus 78 EaV~LLss~kysEKqIGYl~is~L~n~n~dl----~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~- 152 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQIGYLFISLLLNENSDL----MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP- 152 (938)
T ss_pred HHHHHhhcCCccHHHHhHHHHHHHHhcchHH----HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH-
Confidence 5566677777777777776666665544333 344455555666667777778888888766432 3333333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhc----ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWV----SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v----s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
=|..++++-.+|+..|.-||-.+..+. .+......|..-+.+..-.|-..+.-++..++.++.
T Consensus 153 ----KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 153 ----KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred ----HHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 234577888999999999999888773 333344445555554444455555555555555553
No 187
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.84 E-value=1.9e+02 Score=31.71 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhc---CChHHHHHHHHHHHH----HHHhhcChh-hhH----HHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 162 LDPLLVQLLLKSS---QDKRFVCEAAEKALV----AMTTWVSPI-LLL----PKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 162 ~d~ll~~LL~Ka~---~sk~FI~e~A~~AL~----amv~~vs~~-~ll----~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
+-.++..+|.|+. +.++.-..-|..|+- ..+-+..+. .++ ..|...++||-+.+|.-+..-+..++.
T Consensus 280 l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s 358 (938)
T KOG1077|consen 280 LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLAS 358 (938)
T ss_pred HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHh
Confidence 4566777777776 444444444444422 223333322 233 246677778877777776665555544
No 188
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.72 E-value=1e+02 Score=32.42 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCc--chHHHHHHHHHHHHHHHHhhh
Q 020587 81 DTSVKTLVAGLDS--KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNP--RSAVCKTAIMTAADIFSAYND 156 (324)
Q Consensus 81 e~~L~~~l~~L~s--~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksL--RS~Vsk~A~~tl~dLf~~L~~ 156 (324)
.+.++.....+.+ ..|+...-+|..+|.++++-+..-.+ +++.|++.+-|+ -+.+-.++|..+|++.+-+..
T Consensus 386 ~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~----i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~ 461 (559)
T KOG2081|consen 386 DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENT----IMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQ 461 (559)
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccc----hHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHh
Confidence 3455666666654 48999999999999999875433323 344444444433 455889999999998877654
Q ss_pred hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 020587 157 RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV 195 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v 195 (324)
+ |....+++..+...-+.+. .+-.+..|...++..|
T Consensus 462 ~--p~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 462 H--PELLEPVLRYIRQGLQLKR-LASAAALAFHRICSAC 497 (559)
T ss_pred C--cHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHH
Confidence 3 4555555555544433333 7777777777777665
No 189
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.35 E-value=60 Score=35.01 Aligned_cols=138 Identities=15% Similarity=0.022 Sum_probs=94.4
Q ss_pred cCcchHHHHHHHHHHHHHHHH----hhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhH-HHHhhh
Q 020587 133 KNPRSAVCKTAIMTAADIFSA----YNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLL-PKLQPY 207 (324)
Q Consensus 133 ksLRS~Vsk~A~~tl~dLf~~----L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll-~~L~~~ 207 (324)
.-.||..++++.......|.. ..+.+..+-+.+...|..-.++..--||..|-.+|-+.-+....++.+ ......
T Consensus 163 a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~ 242 (823)
T KOG2259|consen 163 AKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKH 242 (823)
T ss_pred HHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 334555554444444444433 335666677777777887777766778999999988877754444433 345577
Q ss_pred ccCCCHHHHHHHHHHHHhhcccccccchhhc----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 208 LKNRNPRIRAKASMCFSRSVPRLGVEGIKEY----GIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 208 ~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~----~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+++-+-.||..+.+++.-.-+++..+...+. -.+..+..++..+.|.+..+|..|-+++..+.
T Consensus 243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 7888899999999888876666633222222 35666777889999999999999988876443
No 190
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.86 E-value=63 Score=27.10 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHH--HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH
Q 020587 80 IDTSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAML--DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS 152 (324)
Q Consensus 80 pe~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~--~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~ 152 (324)
-...++.++..|+ +.|=....=|++.|-.++.+||.--. ..++ .=..|...|.+....|-++|+.|++.|..
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLG-AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHS-HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcC-hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3456777888884 33444455589999999999985321 2222 33567888999999999999999998753
No 191
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=53.53 E-value=2.9e+02 Score=29.05 Aligned_cols=175 Identities=12% Similarity=0.027 Sum_probs=101.1
Q ss_pred HHHHHhhcCCC--CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 84 VKTLVAGLDSK--DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+.++..-+++- -=..|.|+++-|.-++.| -..+...+-++.+.|.+.+.++-..+---+-.++-++...++-...|.
T Consensus 255 ~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~-~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~ 333 (728)
T KOG4535|consen 255 GSDAGSAAGSTYEPSPMRLEALQVLTLLARY-FSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPD 333 (728)
T ss_pred hhhHHhhhcCccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 44444444432 245699999999999876 446667788889999999999999999999999999998888444322
Q ss_pred ------HHHHHHHH-H---------HHhcCChHHHHHHHHHHHHHH----HhhcChh--hhHHHHh-hhccCCCHHHHHH
Q 020587 162 ------LDPLLVQL-L---------LKSSQDKRFVCEAAEKALVAM----TTWVSPI--LLLPKLQ-PYLKNRNPRIRAK 218 (324)
Q Consensus 162 ------~d~ll~~L-L---------~Ka~~sk~FI~e~A~~AL~am----v~~vs~~--~ll~~L~-~~~~hKNp~VR~~ 218 (324)
.+..+-.+ + ...+++ .-.++..++..| ..+.+.. ...+..+ .+-.|||..||..
T Consensus 334 ~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~T---l~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~a 410 (728)
T KOG4535|consen 334 STKAPDQRAPFWTMMLNGPLPRALYDSEHPT---LQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAA 410 (728)
T ss_pred cccchhhhccHHHHHccCCChhhhhhhcCCC---chhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHH
Confidence 22211111 1 233332 112333344333 2333331 2444444 4556999999998
Q ss_pred HHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 020587 219 ASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAAR 263 (324)
Q Consensus 219 aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR 263 (324)
+.+-+.-.+-..+......+ .......+..-|.|..--+|..+-
T Consensus 411 A~Ra~~VyVLHp~lr~d~~f-v~~aa~~il~sl~d~~ln~r~Kaa 454 (728)
T KOG4535|consen 411 ASRALGVYVLHPCLRQDVIF-VADAANAILMSLEDKSLNVRAKAA 454 (728)
T ss_pred HHhhceeEEeccchhhhHHH-HHHHHHHHHHHhhhHhHhHHHHHH
Confidence 87765544444333322222 333334444445555545554433
No 192
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=53.36 E-value=97 Score=27.76 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
....++.+|.-..-++.. +...++..|-.+ ++|...+..|..... ++.||..+..+|. .++.+.+..+
T Consensus 42 ~p~aL~~~L~sv~W~~~~---e~~e~~~ll~~W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~----~~~d~~l~~y- 111 (184)
T smart00145 42 NPKALPKFLLSVNWSDAD---EVAQALSLLKKWAPLDPEDALELLSPKFP--DPFVRAYAVERLE----SASDEELLLY- 111 (184)
T ss_pred ChHHHHHHHhcCCCCCHH---HHHHHHHHHHcCCCCCHHHHHHHhCccCC--CHHHHHHHHHHHH----hCCHHHHHHH-
Confidence 345566666433333443 333444444444 566778888887665 6899999987764 4445545444
Q ss_pred HHHHHHHH----------HHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 240 IDKLIQVA----------ASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 240 ~~~ll~~l----------~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
+..|++++ +.||-+..-.-...|-.++|.|+.-.
T Consensus 112 LpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~ 155 (184)
T smart00145 112 LLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSEL 155 (184)
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHc
Confidence 55555543 33343444444567777888776544
No 193
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=52.19 E-value=1.4e+02 Score=31.19 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHHHHccCcc----hHHHHHHHHHHHHHHHHhhhh----------HHhhHHHHHHHHHHHhc---CChHHHHHHHHH
Q 020587 124 VIPLVVKSLKNPR----SAVCKTAIMTAADIFSAYNDR----------MIDLLDPLLVQLLLKSS---QDKRFVCEAAEK 186 (324)
Q Consensus 124 iv~~l~~~vksLR----S~Vsk~A~~tl~dLf~~L~~~----------m~~~~d~ll~~LL~Ka~---~sk~FI~e~A~~ 186 (324)
++..+...+++.. -.+-.+|+.+++.|...+... .....+.+++.|...+. +.... +.-..
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~ 509 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE--EEKIV 509 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H--HHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH--HHHHH
Confidence 3444444455432 246677899999998886544 22222333333332222 21111 33333
Q ss_pred HHHHHHhhcChhhhHHHHhhhccCC---CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC--CCHHHHHH
Q 020587 187 ALVAMTTWVSPILLLPKLQPYLKNR---NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD--QLPESREA 261 (324)
Q Consensus 187 AL~amv~~vs~~~ll~~L~~~~~hK---Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D--~~pEvR~~ 261 (324)
+|.++- |+.....++.|.+++..+ +..+|..+...|.++... ..+.+.+.+.....| -++|+|-+
T Consensus 510 ~LkaLg-N~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---------~~~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 510 YLKALG-NLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH---------CPEKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHH-HHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----------HHHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HHHHhh-ccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc---------CcHHHHHHHHHHhcCCCCChhHHHH
Confidence 444443 445456888887777655 677777776655444222 133444444444433 34899999
Q ss_pred HHHHHH
Q 020587 262 ARTLLL 267 (324)
Q Consensus 262 AR~~l~ 267 (324)
|-.++.
T Consensus 580 A~~~lm 585 (618)
T PF01347_consen 580 AYLILM 585 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 965553
No 194
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=51.84 E-value=1.8e+02 Score=28.06 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
+.-+..|..-++++...++.++.-++.-|-.-++-+.+...|... ..+|-||-.++..|-.+ +-+.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaI------------a~e~ 251 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDE--TEHPMVRHEAAEALGAI------------ADED 251 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhh--hcchHHHHHHHHHHHhh------------cCHH
Confidence 677888888888888888888888887765544444444333322 57789999998876533 2467
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.++.+.++++|-.+-+|+..-.+|-++.
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998886544
No 195
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=4.8e+02 Score=31.04 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=59.8
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
++..+..+..+-++.+|.-+-.-+..++.++|.. ... -++.+++.++++++|-+-++-...++++..+...+|+.
T Consensus 1542 l~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~-~~~-lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1542 LNQKILKKTRSSSRKARYLAIIQVKLLYTKLGEN-VIV-LLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcch-hHH-hhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 4444555555677788888888888888888775 222 37899999999999999999999999999988888863
No 196
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=51.46 E-value=1.5e+02 Score=25.23 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=49.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+.++||..-.+=.+.|+.= +. .=.+.+++|.+-+++.+..|.--|+..+-.+.+..|..|..++
T Consensus 13 ~l~~~dw~~ileicD~In~~----~~----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKE----PE----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcC----Cc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34578999988877777531 21 1245677888999999999999999999999999998876554
No 197
>KOG2434 consensus RNA polymerase I transcription factor [Transcription]
Probab=51.41 E-value=3e+02 Score=28.75 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=88.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLL 170 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL 170 (324)
+...+| ..+..+++++++....++.+.. ++--...++..+.+.|..|.-+.+..+..++...+.-+++.+..++..+.
T Consensus 44 ~~~~~~-~~~~~~~~l~~~l~~~~~~ida-~~~~~l~~i~~~~~~~~sv~~~~~~~l~~l~~~~~~~l~~c~~~lv~~~~ 121 (500)
T KOG2434|consen 44 LKKNAL-DQVAQLETLLKLLSQFVACIDA-LHHNTLLLILSLRSHRGSVIEALLNLLISLAVTSGKFLSPCLSMLVSNLS 121 (500)
T ss_pred hhhccC-cHHHHHHHHHHHHHhhHHhhcc-cchhHHHHHHHhhcCCchHHHHHHHHHHHHHHhCCchHHHHHHHHHHhCC
Confidence 444456 7788888888887666665542 11111111222559999999999999999999999888888777666551
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhhcC--hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587 171 LKSSQDKRFVCEAAEKALVAMTTWVS--PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 171 ~Ka~~sk~FI~e~A~~AL~amv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
...--...-.=+-+..||..+...++ |..+++.|....-+++..- .+..-++.++++.-
T Consensus 122 ~~~v~~~~~~fe~~H~al~~v~r~vP~~~~~l~~~L~~~~p~~~k~~-~~~~~YvsNll~l~ 182 (500)
T KOG2434|consen 122 QPSVTEQIEHFERAHAALKYILRLVPLAPSFLLPILAQVMPKKDKKD-RTLVTYVSNLLKLE 182 (500)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHccccccch-hhHHHHHhHHHHHH
Confidence 11000012233667788888888874 4558888888887666544 44456666666643
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=51.04 E-value=1.3e+02 Score=25.76 Aligned_cols=50 Identities=14% Similarity=-0.038 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhc-------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 178 RFVCEAAEKALVAMTTWV-------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 178 ~FI~e~A~~AL~amv~~v-------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
.-+..+.-+||.+++.+- ..+..+..|..++.+.++.+|..+..+|..++
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 356667778888776542 34556778889999999999999999887654
No 199
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=50.63 E-value=1.3e+02 Score=24.30 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhhH-----HHHhhhccCCCHHHHHHHHHHH
Q 020587 177 KRFVCEAAEKALVAMTTWVSPILLL-----PKLQPYLKNRNPRIRAKASMCF 223 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~vs~~~ll-----~~L~~~~~hKNp~VR~~aa~~L 223 (324)
+.-+...+-.++.+++.++++..+. +.+...+ .++..|..++.||
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 3777888888999988888776544 4455555 4455577777765
No 200
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=50.24 E-value=1.5e+02 Score=30.64 Aligned_cols=148 Identities=16% Similarity=0.084 Sum_probs=93.3
Q ss_pred HHHHHhhcCCC--CHHHHHHHHHHH---HHHHhHcHHHHHHhhhhH-HHHHHHHc--------cCcchHHHHHHHHHHHH
Q 020587 84 VKTLVAGLDSK--DWVVVCEALNNV---RRLSIFHKEAMLDILGDV-IPLVVKSL--------KNPRSAVCKTAIMTAAD 149 (324)
Q Consensus 84 L~~~l~~L~s~--dW~~r~eaL~~L---RrLa~~h~~~l~~~L~~i-v~~l~~~v--------ksLRS~Vsk~A~~tl~d 149 (324)
++-++.+|.+. +=.-+.-+++.+ .....+.+.-+...++.+ ...+.+.+ .+....+=.-|-.|+|.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 44556667665 455566777777 444433333222334432 23333444 23445555667888888
Q ss_pred HHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---------hHHH-HhhhccCCCHHHHHHH
Q 020587 150 IFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---------LLPK-LQPYLKNRNPRIRAKA 219 (324)
Q Consensus 150 Lf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---------ll~~-L~~~~~hKNp~VR~~a 219 (324)
|.+....-+... -.++.-|+....++..=++-..+.||..|..+..... .+.. +..+..+....+|-.+
T Consensus 401 L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~a 479 (501)
T PF13001_consen 401 LAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAA 479 (501)
T ss_pred HHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 888877666444 3466667777666677888999999999988764311 2222 3466667778899999
Q ss_pred HHHHHhhcccccc
Q 020587 220 SMCFSRSVPRLGV 232 (324)
Q Consensus 220 a~~L~~~v~~~g~ 232 (324)
.+|...|+.-.+.
T Consensus 480 vk~an~~fpf~d~ 492 (501)
T PF13001_consen 480 VKYANACFPFSDV 492 (501)
T ss_pred HHHHHHhCCccch
Confidence 9999999986544
No 201
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=50.14 E-value=2.3e+02 Score=26.76 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=73.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh--HHHH
Q 020587 89 AGLDSKDWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL--LDPL 165 (324)
Q Consensus 89 ~~L~s~dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~--~d~l 165 (324)
..|.++|+..|-.|+..|..+...-| +.+.. +.+.. |+..+.+.++++ +...
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~----------------------~ev~~---L~~F~~~rl~D~~~~~~~ 60 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSR----------------------QEVQV---LLDFFCSRLDDHACVQPA 60 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH----------------------HHHHH---HHHHHHHHhccHhhHHHH
Confidence 34568899999888888887765433 33321 12222 222222222211 1122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHH
Q 020587 166 LVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ 245 (324)
Q Consensus 166 l~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~ 245 (324)
+..|..-. .-+.|-.+.+...+..++++++.+. .....|..+-.++..++++.... +...+-+-+..
T Consensus 61 l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~~~q~-----------~~q~~R~~~~~ll~~l~~~~~~~-l~~~~~~fv~~ 127 (262)
T PF14500_consen 61 LKGLLALV-KMKNFSPESAVKILRSLFQNVDVQS-----------LPQSTRYAVYQLLDSLLENHREA-LQSMGDDFVYG 127 (262)
T ss_pred HHHHHHHH-hCcCCChhhHHHHHHHHHHhCChhh-----------hhHHHHHHHHHHHHHHHHHhHHH-HHhchhHHHHH
Confidence 33333333 1133555566666666666655533 22345666666666666654322 22223333333
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 246 VAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 246 ~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.+...=+.++|..=-.+=+++..+...|+-
T Consensus 128 ~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 128 FIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 333344556666555555555555555543
No 202
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.54 E-value=1.6e+02 Score=34.11 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=96.6
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc-Chh
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV-SPI 198 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v-s~~ 198 (324)
.|-.+++.+..++.+=.-.+=+.|...+|.||...+..+....+.+....|.|+.|...-||.+.-....-+..+- +..
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 3445666777777788888889999999999999999988888999999999999987778877666655444442 222
Q ss_pred hhHH-HHhhhccCCCHHHHHHHHHHHHhhcccccccch-hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 199 LLLP-KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI-KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 199 ~ll~-~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i-~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
+-+. .+.-....--+.+|..+-..+. ......+ ..+... ++..++.-+-|.-+.||..|-.-+..+.+
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~----~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIV----ACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEE----EeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2221 1111112223344433322111 1111111 112344 99999999999999999999887775555
No 203
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=49.14 E-value=1.6e+02 Score=25.28 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc--hhh--
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG--IKE-- 237 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~--i~~-- 237 (324)
+-.-...+|.+..-+.+-+..+|.=||.. .-....+.+.|..-+..-|--.|.....++..+++..-..+ -..
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~---~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv 82 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN---RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYV 82 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhH
Confidence 34456677777766665555554444443 22334588888888877788889999998888777533322 111
Q ss_pred ----ccHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHH
Q 020587 238 ----YGIDKLIQVAASQLSDQLP--ESREAARTLLLELQ 270 (324)
Q Consensus 238 ----~~~~~ll~~l~~~L~D~~p--EvR~~AR~~l~~L~ 270 (324)
.++.++++.++ -+++. .=+..+++.+..++
T Consensus 83 ~~l~~dL~~Iv~~V~---P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 83 SMLQRDLPRIVDAVA---PPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHHHhC---CCCCccchHHHHHHHHHHHHH
Confidence 13455554443 22333 45556666665444
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.08 E-value=39 Score=38.17 Aligned_cols=69 Identities=23% Similarity=0.187 Sum_probs=50.7
Q ss_pred hhccC-CCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 206 PYLKN-RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 206 ~~~~h-KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
..+.. .-|..|.=++.||-++.+.....+.... ++.-.+-+..+|.|..||||.+|--+|.+|.+.+.+
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~-r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGR-RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccc-cccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 33333 3578899899999888887655433322 444555667789999999999999999999888544
No 205
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=48.67 E-value=1.7e+02 Score=25.02 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc--cCCCHHHHHHHHHHHHhhccc-ccccchhhccHHHHHHHHHHhccC
Q 020587 177 KRFVCEAAEKALVAMTTWVSPILLLPKLQPYL--KNRNPRIRAKASMCFSRSVPR-LGVEGIKEYGIDKLIQVAASQLSD 253 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v~~-~g~~~i~~~~~~~ll~~l~~~L~D 253 (324)
..|+...+-.+|.. ++..+.... ......+-..+.+||-.++.. .|...+. ..+..+..++.+|..
T Consensus 101 ~~Fl~~~G~~~L~~---------~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~--~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 101 QEFLELGGLEALLN---------VLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVL--SHPDSVNLIALSLDS 169 (187)
T ss_dssp HHH-HHHHHHHHHH---------HHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHH--CSSSHHHHHHHT--T
T ss_pred HHhccCCCHHHHHH---------HHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHH--cCcHHHHHHHHHHCC
Confidence 47887777777766 333332221 135667788888888887774 3333333 245567888899999
Q ss_pred CCHHHHHHHHHHHHHH
Q 020587 254 QLPESREAARTLLLEL 269 (324)
Q Consensus 254 ~~pEvR~~AR~~l~~L 269 (324)
.++.+|..+-.+|..+
T Consensus 170 ~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 170 PNIKTRKLALEILAAL 185 (187)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998887643
No 206
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.37 E-value=5.3e+02 Score=30.55 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=99.5
Q ss_pred hHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587 111 IFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA 190 (324)
Q Consensus 111 ~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a 190 (324)
.+|+.++...+..++...-..+++.--.|.--|+..+..+|..+.. + .-..++..|+.-.+..+..=.+.|-..|..
T Consensus 423 ~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds-~--~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~ 499 (1426)
T PF14631_consen 423 KGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS-Y--CQQEVVGALVTHIGSGNSQEVDAALDVLCE 499 (1426)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H-H--HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc-h--hHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3566777777777777677788888889999999999999988842 1 124577777777766655555566666666
Q ss_pred HHhhcChhhhHH------HHhhhccCCC-HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 020587 191 MTTWVSPILLLP------KLQPYLKNRN-PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAAR 263 (324)
Q Consensus 191 mv~~vs~~~ll~------~L~~~~~hKN-p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR 263 (324)
++.. .+..+.+ .|..++.+-+ ++||+-.-.+....+.. +.. -..-.+.+.-.+.|.|+-.++..+..|-
T Consensus 500 L~~~-~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~-~~~--~s~i~del~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 500 LAEK-NPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD-SSS--SSSIQDELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HHHH--HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH-SS-----HHHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHhc-cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-ccc--chhhHHHHHHHHHHhhcCCcHHHHHHhH
Confidence 6653 4444444 3456666655 46666543333333333 111 1122566777899999999999999988
Q ss_pred HHHHHHHHHhhhc
Q 020587 264 TLLLELQSVYEKS 276 (324)
Q Consensus 264 ~~l~~L~~~~~~~ 276 (324)
-...++.+.+...
T Consensus 576 IGav~~i~~la~~ 588 (1426)
T PF14631_consen 576 IGAVMMIKHLAAK 588 (1426)
T ss_dssp HHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHH
Confidence 8877777777654
No 207
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.08 E-value=68 Score=35.83 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh
Q 020587 141 KTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP 197 (324)
Q Consensus 141 k~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~ 197 (324)
+.++-.++.++..+|.+|.+++-..+=+++.|++..+..|+..|..|+..|+..+..
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y 622 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNY 622 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCC
Confidence 345677899999999999999888888888888888999999999999999988855
No 208
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=47.37 E-value=67 Score=29.28 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcc---hHHHHHHHHHHHHH--HHHhhhhHHhhHHHHHHHHHHHhcC
Q 020587 101 EALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR---SAVCKTAIMTAADI--FSAYNDRMIDLLDPLLVQLLLKSSQ 175 (324)
Q Consensus 101 eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLR---S~Vsk~A~~tl~dL--f~~L~~~m~~~~d~ll~~LL~Ka~~ 175 (324)
.....|..|..+|+..+.+.++-++..+...+..+. +...........+. +..+.+-+....+. ........
T Consensus 57 ~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep---~~~~~~~~ 133 (223)
T PF10441_consen 57 SLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEP---SSVSRSSK 133 (223)
T ss_pred HHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCc---cccccccc
Confidence 334455567778998888776665544333333222 22222222222233 22232222222222 12222222
Q ss_pred ChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc-cCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCC
Q 020587 176 DKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 176 sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~ 254 (324)
.+.-+..+...+=..+-++++. -++..+.... ..-.+.||....-.+..+++.++.+. ++.+-..+..
T Consensus 134 ~~~~l~~~~~~~k~~~~kh~~~-lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e---------~~~l~a~Ld~- 202 (223)
T PF10441_consen 134 KTSSLTSATSSAKKSLRKHAPY-LLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHE---------LQQLNASLDA- 202 (223)
T ss_pred ccccccHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHcCh-
Confidence 2111223333333333232221 1333333332 24778899998888888888766442 2222223322
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc
Q 020587 255 LPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 255 ~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.+|..|..|..-|.+.
T Consensus 203 ------~gr~~fk~Ly~dY~k~ 218 (223)
T PF10441_consen 203 ------SGRAVFKSLYKDYKKF 218 (223)
T ss_pred ------HHHHHHHHHHHHHHHh
Confidence 2366666666666653
No 209
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=47.11 E-value=2.2e+02 Score=25.71 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=65.5
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHh
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQ 205 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~ 205 (324)
..+.++.+|-+-=+-|.||.+ .-.+.+..+ .+.+...+...+++.-.||+.+..-+|..+... .|..++.-|.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~----~l~~~~~~~--~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl~ 190 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILH----QLKYKEKTD--TDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFVA 190 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHH----HHHHHHccC--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 446677788888888888864 112333333 456666666667888889999999999998776 8888888887
Q ss_pred hhccCCCHHHHHHHHHHH
Q 020587 206 PYLKNRNPRIRAKASMCF 223 (324)
Q Consensus 206 ~~~~hKNp~VR~~aa~~L 223 (324)
.+...=++..++++.++|
T Consensus 191 ~~~~~m~~~s~rea~k~l 208 (208)
T cd07064 191 AHKLRLSPLSRREALKYL 208 (208)
T ss_pred HhhhhcChhHHHHHHhhC
Confidence 776666777777777653
No 210
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=46.40 E-value=1.3e+02 Score=26.91 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHH--------HHHhc
Q 020587 182 EAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV--------AASQL 251 (324)
Q Consensus 182 e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~--------l~~~L 251 (324)
++....+..+..+ ++|...+..|.+... .+|.||..+.++|. .+..+.+..+ +..|+++ +..||
T Consensus 53 ~~~~~~l~~Ll~W~pi~p~~ALell~~~y~-~~~~Vr~yAvr~L~----~~~~e~l~~Y-lpQLVQaLryd~~~~l~~FL 126 (175)
T cd00871 53 DENSPDLKYLLYWAPVSPVQALSLFTPQYP-GHPLVLQYAVRVLE----SYPVETVFFY-IPQIVQALRYDKMGYVEEYI 126 (175)
T ss_pred hhHHHHHHHHcCCCCCCHHHHHHHhCcccC-CCHHHHHHHHHHHH----hCCHHHHHHH-HHHHHHHHhccccchHHHHH
Confidence 3444556666655 566667777776543 57899999887765 4555555555 6666665 45566
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 252 SDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 252 ~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
-+....-...|-.++|.|+.-..++.
T Consensus 127 l~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 127 LETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 66666666688888998885444333
No 211
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.31 E-value=61 Score=26.05 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH
Q 020587 78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM 117 (324)
Q Consensus 78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l 117 (324)
..+...++.+...|.+.+|.....||..|..+.++..+.+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 4567788999999999999999999999999998765444
No 212
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=45.57 E-value=4.9e+02 Score=29.31 Aligned_cols=169 Identities=15% Similarity=0.142 Sum_probs=90.7
Q ss_pred HHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH----HHHHHHHHhcCChHH
Q 020587 105 NVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP----LLVQLLLKSSQDKRF 179 (324)
Q Consensus 105 ~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~----ll~~LL~Ka~~sk~F 179 (324)
.+|+++.+. +..+.+.++.+++.+......--+.|--.=+.+++-..+ +..++....+. ..-.++.+-+++- .
T Consensus 511 a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~lF~k~s~DP-~ 588 (1005)
T KOG2274|consen 511 AVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTINLFLKYSEDP-Q 588 (1005)
T ss_pred HHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHHHHHHhcCCc-h
Confidence 334444433 344555666666666665544444333222222222221 22333222222 2223345555544 7
Q ss_pred HHHHHHHHHHHHHhhc----Ch-hhhHHHHhhhcc---CCCHHHHHHH-HHHHHhhcccccccchhhccHHHHHHHHHHh
Q 020587 180 VCEAAEKALVAMTTWV----SP-ILLLPKLQPYLK---NRNPRIRAKA-SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQ 250 (324)
Q Consensus 180 I~e~A~~AL~amv~~v----s~-~~ll~~L~~~~~---hKNp~VR~~a-a~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~ 250 (324)
|+..++.++..+++.. +. .+++|.|..-++ .|+|..-..+ ...|+.+++. ++..+...-....+++++++
T Consensus 589 V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~ 667 (1005)
T KOG2274|consen 589 VASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKI 667 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhh
Confidence 8888888877776653 22 337786554443 3555444444 4555555554 45445544466677777766
Q ss_pred c-cCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 251 L-SDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 251 L-~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
+ .-.+-++=+.|-.+|..|...-...
T Consensus 668 tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 668 TLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred eeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 5 4456788899999998777664433
No 213
>PF05536 Neurochondrin: Neurochondrin
Probab=45.44 E-value=3.8e+02 Score=28.06 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHHccCcch-HHHHHHHHHHHHHHHHhhhhHHhhHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh
Q 020587 120 ILGDVIPLVVKSLKNPRS-AVCKTAIMTAADIFSAYNDRMIDLLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP 197 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS-~Vsk~A~~tl~dLf~~L~~~m~~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~ 197 (324)
.+-.-++.++..+.+.-. .++..+++|+.-+. .....-...++ ..++.|..-+.+ ..+..|.|-..|..++.....
T Consensus 95 ~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 95 QMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 444556666676665555 99999999999998 44433333322 233344433333 567778888887777766552
Q ss_pred ----------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc---chhh-ccHHHHHHHHHHhccC-CCHHHHHHH
Q 020587 198 ----------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE---GIKE-YGIDKLIQVAASQLSD-QLPESREAA 262 (324)
Q Consensus 198 ----------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~---~i~~-~~~~~ll~~l~~~L~D-~~pEvR~~A 262 (324)
..+++.|......-...-+-..+.+|...+.+.+.. .... .-...+...+...++- -.++-|..+
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 134455665555555556677788899888887321 1111 1255555555555543 458999999
Q ss_pred HHHHHHHHHHhhhcC
Q 020587 263 RTLLLELQSVYEKSH 277 (324)
Q Consensus 263 R~~l~~L~~~~~~~a 277 (324)
-.+...|.++++...
T Consensus 253 l~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 253 LNLAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHHHHhChHh
Confidence 999999999988765
No 214
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.09 E-value=3.5e+02 Score=27.50 Aligned_cols=194 Identities=19% Similarity=0.243 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH-hhhhHHhhHHHHHHHHHHHh---
Q 020587 100 CEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA-YNDRMIDLLDPLLVQLLLKS--- 173 (324)
Q Consensus 100 ~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~-L~~~m~~~~d~ll~~LL~Ka--- 173 (324)
..+|+.+-.+..|. |. +.+..++..+...+... .+++.+-.++..|++. +|..+-..+-.+ |..--
T Consensus 195 ~~~L~vldaii~y~~iP~---~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~L~~i---L~~~~~~~ 266 (464)
T PF11864_consen 195 EACLSVLDAIITYGDIPS---ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAIRTLCDI---LRSPDPQN 266 (464)
T ss_pred HHHHHHHHHHHHcCcCCh---HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHHHHHHHH---HcccCccc
Confidence 45555555555543 32 23444444444433322 6677777777777744 454443322222 21010
Q ss_pred cCChHHHHHHHHHHHHHHHhh-------cChhh--hHHHHhhhccCCCHHHHHHHHHHHHhhc-ccccccchhhccHHHH
Q 020587 174 SQDKRFVCEAAEKALVAMTTW-------VSPIL--LLPKLQPYLKNRNPRIRAKASMCFSRSV-PRLGVEGIKEYGIDKL 243 (324)
Q Consensus 174 ~~sk~FI~e~A~~AL~amv~~-------vs~~~--ll~~L~~~~~hKNp~VR~~aa~~L~~~v-~~~g~~~i~~~~~~~l 243 (324)
.++-..+|-+..--=..+..+ ++... +++.+...++++++.|=..+...+.+++ ...+.. +....-+.+
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~-l~~~~W~~~ 345 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRE-LSEEDWDII 345 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh-hcccCchHH
Confidence 111223332222111122222 22333 8889999999999999999999999999 666554 333333333
Q ss_pred HHHHHHh---c-c-----CCC---HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHH---HHhcCChhhHHH
Q 020587 244 IQVAASQ---L-S-----DQL---PESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENF---CQSKLSPLSAQA 308 (324)
Q Consensus 244 l~~l~~~---L-~-----D~~---pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~---~~~~l~~~~~~~ 308 (324)
+..+... + . +.+ ...+..-..++..+.+.|+...... ..++.-+| |...||+.+|.-
T Consensus 346 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g--------~~~~~~~f~~~~~~~lp~s~~~~ 417 (464)
T PF11864_consen 346 LDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNG--------PKDKLFNFFERVHSYLPDSSALL 417 (464)
T ss_pred HHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCc--------cHHHHHHHHHHHhccCCHHHHHH
Confidence 3333322 1 1 111 5688888888888999998755432 13444444 556677877777
Q ss_pred HH
Q 020587 309 VL 310 (324)
Q Consensus 309 ~~ 310 (324)
|+
T Consensus 418 vl 419 (464)
T PF11864_consen 418 VL 419 (464)
T ss_pred HH
Confidence 77
No 215
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.74 E-value=97 Score=34.42 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=58.8
Q ss_pred hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHH---HHHhcCChHHHHHHHHHHHHHHHhhcC
Q 020587 122 GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQL---LLKSSQDKRFVCEAAEKALVAMTTWVS 196 (324)
Q Consensus 122 ~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~L---L~Ka~~sk~FI~e~A~~AL~amv~~vs 196 (324)
...++.+...+. .|..+-+|+.++..|++..+.+++||+|.++..+ +.+ +.-+.+.|...-.++..+++..-
T Consensus 548 n~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~-~~~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 548 NPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK-SNAKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred CchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHHhcc
Confidence 334455555555 7888999999999999999999999999776655 455 66689999999999999999887
No 216
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.44 E-value=1.7e+02 Score=23.82 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhhHHHHHHHHHHH
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLLLK 172 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~~d~ll~~LL~K 172 (324)
.-.++..++..+..|.+-+...+...+++++..+...+... .+...|+.|-..+...|. .++.+.+|.++-.++.+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 56778888888888887666666677777777776666644 267789999999999986 66777888877777654
No 217
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=44.40 E-value=5.4e+02 Score=29.48 Aligned_cols=190 Identities=21% Similarity=0.188 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH---hhh
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA---YND 156 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~---L~~ 156 (324)
|..+..+++.|++.|-.-|-.|-+-+-|++.+-|..|. ..++.++..+.. +.+ ...=-.||..+++|+.. +.+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p-~e~--~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNP-AED--DSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCc-CCc--hhHHHHHHHHHHHHHhcCCcchH
Confidence 35788999999988866666677777788777664443 345555442111 111 22233899999999865 233
Q ss_pred hHHhhHHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHhhcChh-------hhHHH-HhhhccCCCHHHHHHHH
Q 020587 157 RMIDLLDPLLVQLLLKSS--------QDKRFVCEAAEKALVAMTTWVSPI-------LLLPK-LQPYLKNRNPRIRAKAS 220 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~--------~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~-L~~~~~hKNp~VR~~aa 220 (324)
. ++.++|.+++-.- ....-||++|.=.+=+....-+|. ++.+. |..++-++.-.+|+.++
T Consensus 417 ~----l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 L----LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred H----HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 3 4455555553221 235579999988877777766665 24443 45677799999999999
Q ss_pred HHHHhhccccccc--c--hh-----------------------hcc--HHHHHHHHH-HhccCCCHHHHHHHHHHHHHHH
Q 020587 221 MCFSRSVPRLGVE--G--IK-----------------------EYG--IDKLIQVAA-SQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 221 ~~L~~~v~~~g~~--~--i~-----------------------~~~--~~~ll~~l~-~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
..+-..+-|.|.- + +. ++. .+.+++.+. +=+.-=++.+|+.|-.++..|.
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 9999899885432 1 11 111 333333332 2266678999999999999888
Q ss_pred HHhhhcC
Q 020587 271 SVYEKSH 277 (324)
Q Consensus 271 ~~~~~~a 277 (324)
..+++.-
T Consensus 573 ~~~pk~~ 579 (1133)
T KOG1943|consen 573 LTEPKYL 579 (1133)
T ss_pred HhhHHhh
Confidence 7777653
No 218
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.18 E-value=4.9e+02 Score=28.96 Aligned_cols=164 Identities=16% Similarity=0.065 Sum_probs=93.3
Q ss_pred CHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-h
Q 020587 79 DIDTSVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-D 156 (324)
Q Consensus 79 dpe~~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~ 156 (324)
+....+..+.+.+.+ .--+.|.+|+.-|..+++.....+ +.+.|--|...|. +
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~V-------------------------ga~Gmk~li~vL~~D 73 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEV-------------------------GAQGMKPLIQVLQRD 73 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH-------------------------HHcccHHHHHHHhhc
Confidence 444556677777754 356667777777777766433322 1222333444443 3
Q ss_pred hHHhh-HHHHHHHHHHHhc-C-------ChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 157 RMIDL-LDPLLVQLLLKSS-Q-------DKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 157 ~m~~~-~d~ll~~LL~Ka~-~-------sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
.||++ +..++..++.-+. + ..+-.-+-+..--+.++ -....+..|..++.|++-.||.++.+++..++
T Consensus 74 ~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsall 150 (970)
T KOG0946|consen 74 YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALL 150 (970)
T ss_pred cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHH
Confidence 45544 3344444443332 1 12222222222233333 34557778889999999999999999999999
Q ss_pred ccccccchhhc--cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 228 PRLGVEGIKEY--GIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 228 ~~~g~~~i~~~--~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
...|.+ +... ..+.=+..+..+|.|.-.-+|..|--++..|.+
T Consensus 151 s~r~~e-~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 151 SCRPTE-LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred hcCCHH-HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 987765 2221 122222334456678888888888766654443
No 219
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=44.07 E-value=25 Score=28.88 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHh
Q 020587 247 AASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQS 299 (324)
Q Consensus 247 l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~ 299 (324)
+.++.. |..+|+.|-.+|..|...|- . ..+.....|++||+.
T Consensus 55 lRrY~g--n~~Ir~KA~~lYnkfK~~f~-~--------~~e~~~~~~~~~~~~ 96 (106)
T PF11467_consen 55 LRRYKG--NQQIRKKATELYNKFKSLFL-P--------EPESEQNFWEEFCEE 96 (106)
T ss_dssp HTT-TT---HHHHHHHHHHHHHHHHHHH-----------S-SH----------
T ss_pred HHHhhc--cHHHHHHHHHHHHHHHHHhC-C--------CchHHHHHHHHHHHH
Confidence 344444 48999999999999999996 1 122245668888864
No 220
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.97 E-value=4.2e+02 Score=29.93 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=80.9
Q ss_pred HHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcH---HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh
Q 020587 82 TSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHK---EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 82 ~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~---~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
.++......|. +.+=-.+++|-.-||.+..+.+ +-+.+.++.++..+++.++.--.-.-. .++.++...++..
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseE 578 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEE 578 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHh
Confidence 34555556665 7778889999999998876543 447778888888888877766655544 4667888888889
Q ss_pred HHhhHHHHHHHHH----HHhc---------CChHHHHHHHHHHHHHHHhhcChhh
Q 020587 158 MIDLLDPLLVQLL----LKSS---------QDKRFVCEAAEKALVAMTTWVSPIL 199 (324)
Q Consensus 158 m~~~~d~ll~~LL----~Ka~---------~sk~FI~e~A~~AL~amv~~vs~~~ 199 (324)
+.|++-.++..|- +-+. ++|...+----+|+.+|+.++...+
T Consensus 579 lsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p 633 (1010)
T KOG1991|consen 579 LSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHP 633 (1010)
T ss_pred hchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccH
Confidence 9888777666653 2222 3477777777788888888875544
No 221
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.89 E-value=68 Score=33.12 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=53.6
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhh
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD--QLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+..++..|..-+++||+.|...+..+|..|+++.|...-....-+.+++-+.+..-. +.-.||+-+-.++..-...|+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 344666777888888888888888888889888877532233445555555555533 467777777777666666665
Q ss_pred h
Q 020587 275 K 275 (324)
Q Consensus 275 ~ 275 (324)
.
T Consensus 116 ~ 116 (470)
T KOG1087|consen 116 G 116 (470)
T ss_pred C
Confidence 5
No 222
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.74 E-value=91 Score=31.74 Aligned_cols=120 Identities=12% Similarity=0.130 Sum_probs=71.5
Q ss_pred HcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC-----ChHHHHHHHHH
Q 020587 112 FHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ-----DKRFVCEAAEK 186 (324)
Q Consensus 112 ~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~-----sk~FI~e~A~~ 186 (324)
++++.+.+..+.++..+...+....|+=----+.|+.-++..++..+.|+.+.+++.|...... +|--...-.=.
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 3455666777888888888887777643334577888888899999999999999888765421 23333344444
Q ss_pred HHHHHHhhcC----------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 187 ALVAMTTWVS----------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 187 AL~amv~~vs----------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
++..++.++. ...++|.+..-++.--...--++.+.|..+++...
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555555433 12355644444443333444455677777777654
No 223
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=43.45 E-value=3.8e+02 Score=27.40 Aligned_cols=187 Identities=15% Similarity=0.138 Sum_probs=92.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCc-chHHHHHHHHHHHHHHHH--hhhhHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNP-RSAVCKTAIMTAADIFSA--YNDRMI 159 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksL-RS~Vsk~A~~tl~dLf~~--L~~~m~ 159 (324)
...++..|..+||--...+...|-.++.+.+.-.. ..++.+...+...+++. .+...-.|+.|++.|... ++..|-
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45677777888999999999999998765443111 12333444555555543 455666677788887654 443331
Q ss_pred --hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh--------hcChhhhHHHHhhhcc--CCCHHHHHHHHHHHHhhc
Q 020587 160 --DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT--------WVSPILLLPKLQPYLK--NRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 160 --~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~--------~vs~~~ll~~L~~~~~--hKNp~VR~~aa~~L~~~v 227 (324)
+.+..++ .+|..... -+.-.-...+..++- ......+++.|..-++ .|-..||-..+ .|-+++
T Consensus 183 ~~~~v~~L~-~~L~~~~~---~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~-~l~Nll 257 (429)
T cd00256 183 LADGVPTLV-KLLSNATL---GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLA-IFRNLI 257 (429)
T ss_pred HccCHHHHH-HHHhhccc---cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHH-HHHHHh
Confidence 2222222 23333221 122222223332222 2223446665554443 24444544443 333344
Q ss_pred ccccc---c-----chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 228 PRLGV---E-----GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 228 ~~~g~---~-----~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
..-.. . .+...++.++++.+..- .=+++|..+.-+.+--.|.+.+.+.
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r-k~~DedL~edl~~L~e~L~~~~k~l 313 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQR-KYDDEDLTDDLKFLTEELKNSVQDL 313 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 32110 1 11112344444443211 1156788887777777777766543
No 224
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=43.40 E-value=1.1e+02 Score=27.11 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhH
Q 020587 213 PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDS 292 (324)
Q Consensus 213 p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~ 292 (324)
-.+|..+-.|++.+++.... ..+...+++.+..++.| ..++|..+-.++..|....+..-.. .=+.=-+.
T Consensus 41 LelRK~ayE~lytlLd~~~~----~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~-----~Ld~l~~~ 110 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLS----RIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQ-----RLDSLVEP 110 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCS----SS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHH-----CCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHH-----HHHHHHHH
Confidence 58999999999999984322 22477889999999999 9999999999999887666554321 11222345
Q ss_pred HHHHHHhcCCh
Q 020587 293 WENFCQSKLSP 303 (324)
Q Consensus 293 w~~~~~~~l~~ 303 (324)
+..-|..++..
T Consensus 111 l~~~L~~k~k~ 121 (169)
T PF08623_consen 111 LRKTLSKKLKE 121 (169)
T ss_dssp HHHHHH----T
T ss_pred HHHHhhccCCC
Confidence 55555555544
No 225
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.37 E-value=1.3e+02 Score=28.49 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc---hhhcc-HHHHHHHHHHhcc--------CCCHHHHHHHHHHHH
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG---IKEYG-IDKLIQVAASQLS--------DQLPESREAARTLLL 267 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~---i~~~~-~~~ll~~l~~~L~--------D~~pEvR~~AR~~l~ 267 (324)
++|-+..-+.+-++.+|..-+.+|..++++..... +...| .+.+.+++..++. |.+...=..+-.++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 45555566666677777777777777777766665 55555 4445556666666 666666666655555
Q ss_pred HHHH
Q 020587 268 ELQS 271 (324)
Q Consensus 268 ~L~~ 271 (324)
.|-.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 4433
No 226
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.31 E-value=3.4e+02 Score=29.78 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=73.0
Q ss_pred hhhHHhhHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHhhcC----hhh----hHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 155 NDRMIDLLDPLLV-QLLLKSSQDKRFVCEAAEKALVAMTTWVS----PIL----LLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 155 ~~~m~~~~d~ll~-~LL~Ka~~sk~FI~e~A~~AL~amv~~vs----~~~----ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
...|.-++..++. .|+-+=.+. +.+-.-.-+..++.+.+ ... ++..|..+...|...||-.++..|..
T Consensus 35 ~~~F~eeflr~vn~il~vkKres---i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~ 111 (892)
T KOG2025|consen 35 AHEFSEEFLRVVNYILLVKKRES---IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILAL 111 (892)
T ss_pred HhhhHHHHHHHHHHheeeccCCC---cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 3555666666666 333332332 22222223333343332 222 34467788889999999999999999
Q ss_pred hcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 226 SVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 226 ~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
++...+. +...-...|...+..-+-|+-|-||-.|-.++..|++
T Consensus 112 l~d~~~e--idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 112 LSDENAE--IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred Hhccccc--cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 8884432 2222367788888889999999999999999987775
No 227
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.86 E-value=2.2e+02 Score=29.47 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=73.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH--HHH
Q 020587 88 VAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL--DPL 165 (324)
Q Consensus 88 l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~--d~l 165 (324)
.+.|..+||..-++=.+.|= .+. +.-.+++++|.+-|.+-.|.|..-|+..+.-+.+.+|..|..++ ..+
T Consensus 11 ~~~l~~pDWa~NleIcD~IN------~~~--~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 11 SESLAEPDWALNLEICDLIN------STE--GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred cccccCccHHHHHHHHHHHh------cCc--cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34567889987654333221 111 22348899999999988889999999989999999999997554 456
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcCh
Q 020587 166 LVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSP 197 (324)
Q Consensus 166 l~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~ 197 (324)
+.-+++.... ...-|++-+-..|+++-+....
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 6667776654 3567888888888888877654
No 228
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.28 E-value=3.4e+02 Score=26.56 Aligned_cols=150 Identities=14% Similarity=0.079 Sum_probs=79.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhh-HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGD-VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~-iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
.+.+-+-+.+=..+..||..||.=.--|+ |.+.+-. |...+...++. ...+...-+..+.-|...=.-.+++|+-.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD~gl~~--LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Ylh~ 258 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTDPGLQQ--LLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPYLHQ 258 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCchh--hhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence 33344445666778888888875332221 1111111 12223333332 35555555655555555555667899888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc-cCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
+++.+|...-... +...- ......+|..+|.+|..++.+.+... ..-..++
T Consensus 259 Lip~vltclv~~~--------------------------l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri 310 (343)
T cd08050 259 LIPSVLTCLVAKQ--------------------------LCSRPPDDNHWALRDYAARLLAQICRKFSTSY--NTLQPRI 310 (343)
T ss_pred HHHHHHHHhhhHh--------------------------hcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHH
Confidence 8888875542210 00000 23445788888888888888776641 1115666
Q ss_pred HHHHHHhccCCC-HHH-HHHHHHHH
Q 020587 244 IQVAASQLSDQL-PES-REAARTLL 266 (324)
Q Consensus 244 l~~l~~~L~D~~-pEv-R~~AR~~l 266 (324)
...+.+.+.|.. |-+ .+-|-..+
T Consensus 311 ~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 311 TRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHcCCCCCcchhhHHHHHH
Confidence 666665555443 333 44444444
No 229
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=69 Score=31.48 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 203 KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 203 ~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
.|...+..-||.||..+..++..+.-+ |-. ....+-..+++.+.+++.|..| ++.+++-++.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~-~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVn 68 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQ-SLSKYSEALLKDLTQLLKDLDP-AEPAATALVN 68 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chh-hhccchhhhHHHHHHHccCccc-ccHHHHHHHH
Confidence 456677889999999999999988887 444 3334578889999999999888 6665554443
No 230
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=42.06 E-value=41 Score=29.11 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc--hhhccHHHHHHHHHHhccC-CCHH
Q 020587 181 CEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG--IKEYGIDKLIQVAASQLSD-QLPE 257 (324)
Q Consensus 181 ~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~--i~~~~~~~ll~~l~~~L~D-~~pE 257 (324)
-..+..+|..|....+.+.|-..|..++..-..+| .-|..|++.+|.+. ....+++.|+.-...++.+ ++++
T Consensus 15 E~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi-----~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~~~~~ 89 (147)
T cd07909 15 EKQLVKALPKMAKAATSEELKEAFESHLEETEGQV-----ERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEETGDSA 89 (147)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhccCChH
Confidence 34566777788877777777777766654322222 55677888887652 2223577777777666654 4799
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCC
Q 020587 258 SREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLS 302 (324)
Q Consensus 258 vR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~ 302 (324)
+|..+--+...-..+|+-.+-....+.....+...-...|+.+|.
T Consensus 90 v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~~~L~ 134 (147)
T cd07909 90 VLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQETLD 134 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999985555544566654433222223333344455555555543
No 231
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=42.00 E-value=1.5e+02 Score=25.67 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHh--hcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTT--WVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~--~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
..++.+|.-.--.+ .++...+...|-. .++|...+..|.....+ +.||..+.++|.. ++.+.+..+ +.
T Consensus 39 ~~lp~~L~sv~w~~---~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~--~~vr~yAv~~L~~----~~~~~l~~y-lp 108 (152)
T cd00864 39 KALPKLLKSVNWND---DEEVSELYQLLKWWAPLSPEDALELLSPKYPD--PVVRQYAVRVLES----ASDDELLLY-LP 108 (152)
T ss_pred HHHHHHHHHccCCC---HHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCC--HHHHHHHHHHHHh----CCHHHHHHH-HH
Confidence 44555554443222 3444445555554 36777788888876655 9999999877654 455555544 56
Q ss_pred HHHHHH
Q 020587 242 KLIQVA 247 (324)
Q Consensus 242 ~ll~~l 247 (324)
.|++++
T Consensus 109 QLVQaL 114 (152)
T cd00864 109 QLVQAL 114 (152)
T ss_pred HHHHHH
Confidence 666654
No 232
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=41.33 E-value=59 Score=26.76 Aligned_cols=72 Identities=22% Similarity=0.147 Sum_probs=46.3
Q ss_pred hhhHHHHhhhc---cCCCHHHHHHHHHHHHhhcccccccchhh-c-cHHHHHHHHHHhc--c----CCCHHHHHHHHHHH
Q 020587 198 ILLLPKLQPYL---KNRNPRIRAKASMCFSRSVPRLGVEGIKE-Y-GIDKLIQVAASQL--S----DQLPESREAARTLL 266 (324)
Q Consensus 198 ~~ll~~L~~~~---~hKNp~VR~~aa~~L~~~v~~~g~~~i~~-~-~~~~ll~~l~~~L--~----D~~pEvR~~AR~~l 266 (324)
..++..|+.-+ ++|++.+..++..+|..++.. |.+.+.. . ..-..+..+..|= . |....+|+.|+.++
T Consensus 38 ~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n-G~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~ 116 (125)
T PF01417_consen 38 QEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN-GSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEIL 116 (125)
T ss_dssp HHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH-S-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHH
Confidence 44666777776 899999999999999999887 5543333 1 1223334444442 2 23346999999998
Q ss_pred HHHH
Q 020587 267 LELQ 270 (324)
Q Consensus 267 ~~L~ 270 (324)
..|.
T Consensus 117 ~lL~ 120 (125)
T PF01417_consen 117 ELLN 120 (125)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7654
No 233
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.26 E-value=5.2e+02 Score=28.62 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=54.4
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.+.+.|-.++.||.--|-.++|+.+..+-...+.. +..-+.++.-|+.-..+-.|.+|-+.+..+-..+++--
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~------l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE------LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh------cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 46667788889999999888888877655543332 22256677778888889999999999998877776543
No 234
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=40.97 E-value=2.3e+02 Score=24.30 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=79.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHH-----HHHhhcChhhhHHHHhhh
Q 020587 133 KNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALV-----AMTTWVSPILLLPKLQPY 207 (324)
Q Consensus 133 ksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~-----amv~~vs~~~ll~~L~~~ 207 (324)
.+.|+. |..+++.+....+..+...+...+..++.+...+.....-.+-.+|- ...+-.....+++.|.+.
T Consensus 19 ~~~r~~----a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 19 EEVRSH----ALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred HhHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 355554 44555555677888888888888888887776553333323322221 112222344577777766
Q ss_pred cc--CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHH-HHHHHHHHHH
Q 020587 208 LK--NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPE-SREAARTLLL 267 (324)
Q Consensus 208 ~~--hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pE-vR~~AR~~l~ 267 (324)
+. .++..+...++++|...+-. +....+-.+..++.+..++. +.+.. +|..|--.+.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 66 78899999999988876653 22334456777788888884 44444 6777765554
No 235
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=40.90 E-value=61 Score=21.01 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.++.+.++|.+.++++|+.|-.+++-|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566777888899999999998887755
No 236
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=40.82 E-value=60 Score=28.97 Aligned_cols=101 Identities=25% Similarity=0.272 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI 240 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~ 240 (324)
...++.+|.-+.-.+. ++...++..|-.+ ++|...+..|.....+ +.||..+..+|.. ++.+.+..+ +
T Consensus 44 p~aL~~~L~sv~w~~~---~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~--~~VR~yAv~~L~~----~~d~~l~~y-L 113 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNP---EEVSEAYQLLLQWPPISPEDALELLSPNFPD--PFVRQYAVRRLES----LSDEELLFY-L 113 (184)
T ss_dssp GGGHHHHHTTSTTTSH---HHHHHHHHHHHTSHCTTHHHHHHCTSTT-----HHHHHHHHHHHCT----S-HHHHHHH-H
T ss_pred chHHHHHHhhCCCCch---hhHHHHHHHHHcCCCCCHHHHHHHHHhhccH--HHHHHHHHHHHHH----cCchHHHHH-H
Confidence 3455556653332232 2334455555444 5677788888877666 9999999887643 444444444 4
Q ss_pred HHHHHHH----------HHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 241 DKLIQVA----------ASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 241 ~~ll~~l----------~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
..|++++ +.||-+..-.-...|-.++|.|+.--
T Consensus 114 pQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~ 156 (184)
T PF00613_consen 114 PQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAEL 156 (184)
T ss_dssp HHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 5555543 23333333334467777778776544
No 237
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.07 E-value=4.2e+02 Score=27.56 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=52.7
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhcc--CCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 165 LLVQLLLKSS---QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLK--NRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 165 ll~~LL~Ka~---~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~--hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
.++.|+.-+- ....++|-+|-.||..+. ...|.++.+.|.+-.. ..++.||..+...|..+=. .
T Consensus 522 ~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P----~------ 590 (618)
T PF01347_consen 522 SIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNP----S------ 590 (618)
T ss_dssp GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-------------
T ss_pred hhHHHHhHhhhccccchHHHHHHHHHHHHHh-hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC----C------
Confidence 4444444333 337899999999999773 3446667776665443 4668899999877765422 1
Q ss_pred HHHHHHHHHHh-ccCCCHHHHHHHHHHH
Q 020587 240 IDKLIQVAASQ-LSDQLPESREAARTLL 266 (324)
Q Consensus 240 ~~~ll~~l~~~-L~D~~pEvR~~AR~~l 266 (324)
..+++.++.. -.|.+++|+.+-...+
T Consensus 591 -~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 591 -PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 2233334444 4799999998876543
No 238
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.63 E-value=97 Score=31.39 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.+|..|-.-+.|++|-|--.+..++..|+.+.|..--++..-..+...+.++++ -+.+-|++.-|.++..+...|.++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 377788888899999999999999999999887764333344455566666666 5668899888888877766665443
No 239
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=38.33 E-value=4.8e+02 Score=27.17 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHHHHhHcH-----HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh-hhh-HH-----h
Q 020587 93 SKDWVVVCEALNNVRRLSIFHK-----EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY-NDR-MI-----D 160 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~-----~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L-~~~-m~-----~ 160 (324)
+.-|..+.++|..+-++.--.| +-...+++.-+..|-..++++-..+-......+.-|...| +.. |. .
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 4568888877765554322111 1122345555555666666666666666666666555554 222 21 2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh--cChhhhHHH-Hhhhc-cCCCHHHHHHHHHHHHhhcccccccchh
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW--VSPILLLPK-LQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIK 236 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~--vs~~~ll~~-L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~ 236 (324)
-++.-++.|+...++..+.|+-.|......|... ....+++|. |...+ .+|.|-+-..-...|.+++...|..
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgkG--- 560 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGKG--- 560 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCCC---
Confidence 3577888999999999889999898888877765 466668884 65555 4788888777777777777766553
Q ss_pred hccHHHHHHHHHH-----hccCCCHHHHHHHHHHHH
Q 020587 237 EYGIDKLIQVAAS-----QLSDQLPESREAARTLLL 267 (324)
Q Consensus 237 ~~~~~~ll~~l~~-----~L~D~~pEvR~~AR~~l~ 267 (324)
..-+...+++ ...-+.-|+|++|-.+.+
T Consensus 561 ---ragfiediakkfgVpaeehglndkreaafaiic 593 (666)
T KOG4825|consen 561 ---RAGFIEDIAKKFGVPAEEHGLNDKREAAFAIIC 593 (666)
T ss_pred ---ccchhHHHHHHhCCCccccchhHHHHhHhhhhh
Confidence 1122222222 233455667777766665
No 240
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.06 E-value=3.4e+02 Score=25.27 Aligned_cols=114 Identities=17% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcC--hhhhHHHHhhhccCCCHHHHHHHHH
Q 020587 145 MTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVS--PILLLPKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 145 ~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~ 221 (324)
..+.|+|...+....+ .+..+..+..- ..++.-.+...+-.-|..+....- +...-. ..+..+..
T Consensus 40 ~ll~D~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~-----------~~~~~~~~ 107 (324)
T PF11838_consen 40 QLLDDLFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQE-----------AFRKFVRR 107 (324)
T ss_dssp HHHHHHHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHH-----------HHHHHHHH
Confidence 3456666666544333 22233333333 355666777777777766443222 111111 23444455
Q ss_pred HHHhhcccccccch--hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 222 CFSRSVPRLGVEGI--KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 222 ~L~~~v~~~g~~~i--~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
++...++++|.+.. .......+-..+...+. +++++...+++.+..+..
T Consensus 108 l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~-~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 108 LLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC-GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhc
Confidence 66666666655533 22212222222233333 999999999998876555
No 241
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=37.76 E-value=2.6e+02 Score=23.99 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH----h-hhhHHhhHHHHHHHHHHHhc
Q 020587 100 CEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA----Y-NDRMIDLLDPLLVQLLLKSS 174 (324)
Q Consensus 100 ~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~----L-~~~m~~~~d~ll~~LL~Ka~ 174 (324)
.+|-..|-.|-. ....+...++.++...+ ..+.+.-|.+++|++.. - ++..+..-...++.++.-+.
T Consensus 14 ~~g~~fls~l~~-~~~~~~~~~~~~i~~~~-------~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~ 85 (152)
T PF12422_consen 14 FEGRKFLSFLFS-LSGIFIKKIHKLIKCQI-------PQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAI 85 (152)
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHc-------ccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhH
Q ss_pred CC-hHHHHHHHHHHHHHHHhhc--------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 175 QD-KRFVCEAAEKALVAMTTWV--------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 175 ~s-k~FI~e~A~~AL~amv~~v--------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
.. ...+...-...|....+.- -..-.=|.|+++++..|..||..++..+...+....+
T Consensus 86 ~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~aFpl~~p 152 (152)
T PF12422_consen 86 HLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLDAFPLHDP 152 (152)
T ss_pred HhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHHHcCCcCc
No 242
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=37.15 E-value=65 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=28.4
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
++..+..+.+|=++.||.-+..+|..+++..+..
T Consensus 12 l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 12 LMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4556778889999999999999999999987654
No 243
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.72 E-value=2.5e+02 Score=36.04 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=92.5
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH--------HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 020587 124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM--------IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV 195 (324)
Q Consensus 124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m--------~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v 195 (324)
++++++..+..-.+.+++.+.+++.-+|.....-+ .|.++.++..+.+.+-+..-.-+..+-.++..++.++
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 56899999999999999999999999998855443 3667888888887766543333333334444444444
Q ss_pred ChhhhHH-------HHh---hhcc--CCC---HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHH
Q 020587 196 SPILLLP-------KLQ---PYLK--NRN---PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESRE 260 (324)
Q Consensus 196 s~~~ll~-------~L~---~~~~--hKN---p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~ 260 (324)
+..-++. .+. ..+. ..+ -.++...-..+..+....+.+....+-...++..+...|.+++..||+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 4211221 111 1111 112 122222222333333322222222234666777888899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020587 261 AARTLLLELQSVYE 274 (324)
Q Consensus 261 ~AR~~l~~L~~~~~ 274 (324)
.+.+++..++..++
T Consensus 1145 ~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSG 1158 (3550)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998887773
No 244
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=36.66 E-value=6.3e+02 Score=28.04 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH---hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD---ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~---~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
...+.+.|.+..=..+..-+..||.+ |||.+-.+ .|..+...|+..+ .+++......--.
T Consensus 428 ~eel~~lL~~~~~~~~~~iI~RIrk~--~hpsLa~~NK~Kl~~f~~vLlq~i---------------~~la~~~~~~~~~ 490 (840)
T PF04147_consen 428 HEELLELLDGYSPEDQPTIIQRIRKC--YHPSLAEGNKEKLQVFFGVLLQHI---------------LYLASQDSPPPFE 490 (840)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHh--CCCCCCcchHHHHHHHHHHHHHHH---------------HHHhcccCCcCHH
Confidence 34555555544445566667777765 88865443 3444433333332 2222222111223
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------------------hhhHHHHhhhccCCCHHHHHHHHHH
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------------------ILLLPKLQPYLKNRNPRIRAKASMC 222 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------------------~~ll~~L~~~~~hKNp~VR~~aa~~ 222 (324)
.++.|++.|...+..-...+++....-|..|-..... -+++..|.+...|+.|.| .=+..+
T Consensus 491 ~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPTSD~~HpVV-TPalll 569 (840)
T PF04147_consen 491 VLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPTSDFRHPVV-TPALLL 569 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCcccccCcch-hHHHHH
Confidence 3677777777777766666666666666666443322 235556778888888755 334455
Q ss_pred HHhhcccccccchhhcc----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 223 FSRSVPRLGVEGIKEYG----IDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 223 L~~~v~~~g~~~i~~~~----~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+..++.+.....+.... +-.|+=....+-.==.||+=.+-..+|.++.
T Consensus 570 m~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~L~~~~ 621 (840)
T PF04147_consen 570 MSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFVPEVINFLLGLLLLLV 621 (840)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 55555554444333321 1111111111222224888888888887663
No 245
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.64 E-value=2.9e+02 Score=24.11 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcChhh-----hHHHHhhhccCCCHH
Q 020587 141 KTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSPIL-----LLPKLQPYLKNRNPR 214 (324)
Q Consensus 141 k~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~~~-----ll~~L~~~~~hKNp~ 214 (324)
+-+...+.++|+.-...-..-++.++..++.+..+ .+.|+ ++|..|+...+..- -+..+..|+..-++.
T Consensus 36 ~LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~i-----dlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~ 110 (158)
T PF14676_consen 36 QLGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYI-----DLLSELVRKAPLTVLECSSKLKELLDYLSFLPGD 110 (158)
T ss_dssp THHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHH-----HHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHH-----HHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHH
Confidence 35666666666665544445567777777766665 45665 78888888765432 333455666666666
Q ss_pred HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
+-......+.-+++. + ..-++.++-.+.|.+--+..++|..|-..|.
T Consensus 111 ~a~~ll~Al~PLi~~---s---~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 111 VAIGLLRALLPLIKF---S---PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---C---HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 644444443333332 1 1127889999999999999999999977664
No 246
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.24 E-value=84 Score=20.31 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.8
Q ss_pred hHHHHHHHHccCcchHHHHHHHHHHHHHH
Q 020587 123 DVIPLVVKSLKNPRSAVCKTAIMTAADIF 151 (324)
Q Consensus 123 ~iv~~l~~~vksLRS~Vsk~A~~tl~dLf 151 (324)
..++.+++.+++....|.++|+-+++.|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788899999999999999999998875
No 247
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=36.14 E-value=5.9e+02 Score=27.52 Aligned_cols=217 Identities=16% Similarity=0.134 Sum_probs=135.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH----------hhhhHH-HHHHHHccCcchHHHHHHHHHHHHHHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD----------ILGDVI-PLVVKSLKNPRSAVCKTAIMTAADIFS 152 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~----------~L~~iv-~~l~~~vksLRS~Vsk~A~~tl~dLf~ 152 (324)
+.+.|-.++|.+--.-+-||..=-.|....|+.-.+ -.++-+ .-.+..++++--..+..|-+.++.++.
T Consensus 44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~ 123 (858)
T COG5215 44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123 (858)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 446666667776666555554333343322322111 111222 234557777777788888888888776
Q ss_pred H-hhhhHHhhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHH-------HHhhhc-c-CCCHHHHHHHHH
Q 020587 153 A-YNDRMIDLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLP-------KLQPYL-K-NRNPRIRAKASM 221 (324)
Q Consensus 153 ~-L~~~m~~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~-------~L~~~~-~-hKNp~VR~~aa~ 221 (324)
. +.... -..++..|....|+. -.-+..++-.++..||.+.+|..++. .+..|. + .....||-.+..
T Consensus 124 ~Elp~~~---wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~ 200 (858)
T COG5215 124 MELPNSL---WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALK 200 (858)
T ss_pred hhCcccc---chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHH
Confidence 4 33222 234556666667654 44455566778899999999966554 233343 2 466799999999
Q ss_pred HHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCC-------CC-----CCCCCC--
Q 020587 222 CFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDS-------AP-----ATVSDS-- 287 (324)
Q Consensus 222 ~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~-------~~-----~~~~~~-- 287 (324)
+|...+.-....--.+..+.-+++++...-+..+.|+-.+|-.++..++..|-+.-.. +. ..+.++
T Consensus 201 aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va 280 (858)
T COG5215 201 ALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVA 280 (858)
T ss_pred HHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 9998655432222233468889999999999999999999999999877776543210 00 113332
Q ss_pred -cchhHHHHHHHhcCCh
Q 020587 288 -PEMDSWENFCQSKLSP 303 (324)
Q Consensus 288 -~~~~~w~~~~~~~l~~ 303 (324)
+.-|=|...|++...+
T Consensus 281 ~qavEfWsticeEeid~ 297 (858)
T COG5215 281 IQAVEFWSTICEEEIDG 297 (858)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 3458898888877544
No 248
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=35.37 E-value=3.1e+02 Score=26.33 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhhc---ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 177 KRFVCEAAEKALVAMTTWV---SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~v---s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
|.-.-...-.|+...+... -+..++..+..|+++|.+.+|+.-..++..++.
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 4333344444444444333 345688889999999999999999888888886
No 249
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=7.3e+02 Score=28.15 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=92.3
Q ss_pred HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh-------HHhhHHHHHHHHHHHhcCChHHHHHHH---HHHH
Q 020587 119 DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR-------MIDLLDPLLVQLLLKSSQDKRFVCEAA---EKAL 188 (324)
Q Consensus 119 ~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~-------m~~~~d~ll~~LL~Ka~~sk~FI~e~A---~~AL 188 (324)
+.++.+++.+...+.|--+...-.|+.|+-.||+.++=. +...++.++|.++....+ ++.+.. ...+
T Consensus 123 ~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~---ll~~~s~~s~el~ 199 (1010)
T KOG1991|consen 123 EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNG---LLSQESYQSVELQ 199 (1010)
T ss_pred ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---hccccchHHHHHH
Confidence 356677777888888889999999999999999998722 334566777777766532 222221 1111
Q ss_pred HHHHh--hcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 189 VAMTT--WVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 189 ~amv~--~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
.-|+. +.-...-|| ..+ -++..=..-..++..+++|-.+.....-+ +... -.++=.-+.+.|-..+
T Consensus 200 klIlKifks~~~~~LP---~~L--~~~~~f~~W~~l~l~i~~rpvP~E~l~~d-----~e~R--~~~~wwK~KKWa~~~L 267 (1010)
T KOG1991|consen 200 KLILKIFKSLIYYELP---LEL--SAPETFTSWMELFLSILNRPVPVEVLSLD-----PEDR--SSWPWWKCKKWALHIL 267 (1010)
T ss_pred HHHHHHHHHHHHHhCC---HHh--hCchhHHHHHHHHHHHHcCCCChhcccCC-----hhhc--ccccchhhHHHHHHHH
Confidence 22111 000000111 111 11222233345555566664442222110 0000 0011122334454444
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhHHHHHHHhhhhcccc
Q 020587 267 LELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGL 320 (324)
Q Consensus 267 ~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~ 320 (324)
..|-.-|++..- -.++.+++..+..++.-+---+-.+|+..--|.|+
T Consensus 268 ~Rlf~Ryg~~~~-------~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~ 314 (1010)
T KOG1991|consen 268 NRLFERYGSPSL-------VVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQL 314 (1010)
T ss_pred HHHHHHhCCccc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444443331 11457788888888887777778888776544443
No 250
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.15 E-value=5.9e+02 Score=26.98 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=99.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh----hhHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN----DRMI 159 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~----~~m~ 159 (324)
++++.+-+-+.|=..+-+||..|+.=.--| +| ++-++..|.+.+..-=++=...-+.++..|..+|= -.++
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TDsGL~--~L---lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETDSGLQ--QL---LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCccHH--HH---HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 455555555678888999999887422111 11 22222222232221100111225566666666653 3478
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 160 DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
+|+-.++|.+|...-..|--. .-..+....+|--+|.++..++.+++.. ...-
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~-------------------------~p~~dnhwaLRDfAA~ll~~i~k~f~~~--y~~L 336 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCL-------------------------RPELDNHWALRDFAARLLAQICKNFSTL--YNNL 336 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccC-------------------------CccccchHHHHHHHHHHHHHHHHhhhhH--HHHH
Confidence 999999998886543321000 0034666788999999999998887763 1112
Q ss_pred HHHHHHHHHHhccCC-C-HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhh
Q 020587 240 IDKLIQVAASQLSDQ-L-PESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLS 305 (324)
Q Consensus 240 ~~~ll~~l~~~L~D~-~-pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 305 (324)
-.++.+.+.+.+.|. . .-+.+-+-..|. .|++..- ..---++...|..-|++.|....
T Consensus 337 ~~Rit~tl~k~l~D~~~~~st~YGai~gL~----~lg~~~I----~~~ilp~L~~~~~~l~~~l~~~~ 396 (576)
T KOG2549|consen 337 QPRITRTLSKALLDNKKPLSTHYGAIAGLS----ELGHEVI----RTVILPNLKEYNERLQSVLDVES 396 (576)
T ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHH----Hhhhhhh----hheeccchHHHHHHhhhhcccch
Confidence 466777777776665 3 444444444442 3333220 01112356778888887765543
No 251
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=32.75 E-value=3.8e+02 Score=26.88 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHH--HHHhhhh
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI--FSAYNDR 157 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dL--f~~L~~~ 157 (324)
+..++.++..=-..+=.+.+--|+.+-.+...- |+.+......+...+.+++.|...+|+-.|+.....= ...+...
T Consensus 254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~ 333 (409)
T PF01603_consen 254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN 333 (409)
T ss_dssp HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC
Q ss_pred HHhhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHh
Q 020587 158 MIDLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTT 193 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~ 193 (324)
-...+..+++.|..-+..- ++-|+..|..+|..+.+
T Consensus 334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 252
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=32.51 E-value=1.6e+02 Score=24.06 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHHHhHcHHHHHH
Q 020587 79 DIDTSVKTLVAGL---DSKDWVVVCEALNNVRRLSIFHKEAMLD 119 (324)
Q Consensus 79 dpe~~L~~~l~~L---~s~dW~~r~eaL~~LRrLa~~h~~~l~~ 119 (324)
+-...+.-+...| +.++|.....||..|.-|+.+.++.+..
T Consensus 36 ~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~ 79 (125)
T PF01417_consen 36 DCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD 79 (125)
T ss_dssp HHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred cHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH
Confidence 3345677777888 6779999999999999999988664433
No 253
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=3.4e+02 Score=27.26 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=56.3
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY---GIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~---~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
++|.|+.|+.|-+..|+.-++.-+-++++..+...+-+. --..+++.+.-++...+-||-++|-+.+..+
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 667899999999999999999999989888765544332 2456778888899999999999998887643
No 254
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=31.18 E-value=2.6e+02 Score=22.28 Aligned_cols=63 Identities=6% Similarity=-0.000 Sum_probs=50.8
Q ss_pred HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh-HHhhHHHHHHHHHHHhcCC
Q 020587 114 KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR-MIDLLDPLLVQLLLKSSQD 176 (324)
Q Consensus 114 ~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~-m~~~~d~ll~~LL~Ka~~s 176 (324)
|+.+.+..+.++.-+...|..+...|-.-|+..+.-|.+.++.. +..+...+++..+...+..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 45677778888888888888888889999998888888888877 6777777888887777654
No 255
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=1.8e+02 Score=31.94 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=66.2
Q ss_pred HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhcc
Q 020587 131 SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLK 209 (324)
Q Consensus 131 ~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~ 209 (324)
.+.|.+=-|=|.|...+|.++..= ...++..+...+++ |-+||-.+.-||...|........+..|-+-.+
T Consensus 563 aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 563 AVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred cccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 477888888889888877653221 12333444444444 899999999999999998888889999989999
Q ss_pred CCCHHHHHHHHHHHHhhcc
Q 020587 210 NRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 210 hKNp~VR~~aa~~L~~~v~ 228 (324)
+++--||..++--+..++-
T Consensus 635 D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 9999999987655544443
No 256
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.58 E-value=8.3e+02 Score=27.25 Aligned_cols=143 Identities=20% Similarity=0.129 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hh-hhH
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YN-DRM 158 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~-~~m 158 (324)
...+.+...+++.--..++.|+..+-.=.-.|. ...|..++-.+.+- +-|.+ -.|+-++.|||-. |. +.+
T Consensus 196 sd~k~l~siiSsGT~~DkitA~~LlvqesPvh~---lk~lEtLls~c~KK--sk~~a--~~~l~~LkdlfI~~LLPdRKL 268 (988)
T KOG2038|consen 196 SDAKWLYSIISSGTLTDKITAMTLLVQESPVHN---LKSLETLLSSCKKK--SKRDA--LQALPALKDLFINGLLPDRKL 268 (988)
T ss_pred hhHHHHHHHHhcCcchhhhHHHHHhhcccchhH---HHHHHHHHHHHhhh--hHHHH--HHHHHHHHHHHHhccCcchhh
Confidence 456666777777777777777765544322221 11222222222221 33332 3466666666654 11 111
Q ss_pred ----------------------HhhHHHHHHHH--------HHHhcCChHHHHHHHHHHHHHHHhhcChhh--hHHHHhh
Q 020587 159 ----------------------IDLLDPLLVQL--------LLKSSQDKRFVCEAAEKALVAMTTWVSPIL--LLPKLQP 206 (324)
Q Consensus 159 ----------------------~~~~d~ll~~L--------L~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--ll~~L~~ 206 (324)
-=+++..+..| -.-..+.--++...+-.++..|..+-+.+. +|..|..
T Consensus 269 k~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVN 348 (988)
T KOG2038|consen 269 KYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVN 348 (988)
T ss_pred HHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 01233333333 333345556777777777777777776655 8888999
Q ss_pred hccCCCHHHHHHHHHHHHhhccccc
Q 020587 207 YLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 207 ~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
.++|.+..|-+++..+|..+...+.
T Consensus 349 KlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 349 KLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred hcCCcchhhhhhHHHHHHHHHhhCC
Confidence 9999999999999999999888653
No 257
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.08 E-value=5e+02 Score=30.86 Aligned_cols=56 Identities=21% Similarity=0.379 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587 137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT 192 (324)
Q Consensus 137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv 192 (324)
+.-|..|++.+-+||..+.+.+...++.++-.|.....+++.-+...+..||...+
T Consensus 1242 ~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~ 1297 (1514)
T KOG0929|consen 1242 STTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLV 1297 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHH
Confidence 46688899999999999999999888888888888888888877777777765443
No 258
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=26.53 E-value=8.7e+02 Score=26.50 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHh-hhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQ-PYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~-~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
..+.+++-|+.-..+...+|.+.+-..+-...+.+... .++|.|- -+.+|-+..|+-.++.|+..++++++...+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566664444456778899999999998888887653 3777764 466789999999999999999987655433
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
++.++ .+.++..=.+|+.-..--+++..
T Consensus 466 ----~d~~l-pi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 466 ----LDELL-PILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred ----HHHHH-HHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444 34445555666655554455543
No 259
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=26.49 E-value=2.3e+02 Score=25.20 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 163 DPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 163 d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
...++.+|.-+-+ ....+.+ +...|-.+ ++|...+..|.+...+ +.||..+..+|.. ++.+.+..+
T Consensus 38 p~aLp~~L~s~~~w~~~~~~e----~~~LL~~W~p~~p~~ALeLL~~~f~d--~~VR~yAV~~L~~----~~ddeL~~y- 106 (169)
T cd00869 38 PNALPLVLASAPSWDWANLMD----VYQLLHQWAPLRPLIALELLLPKFPD--QEVRAHAVQWLAR----LSNDELLDY- 106 (169)
T ss_pred cHHHHHHHHhcccCcHHHHHH----HHHHHhCCCCCCHHHHHHHcCCcCCC--hHHHHHHHHHHHh----CCHHHHHHH-
Confidence 4556666664422 1223332 33333233 5666677777766655 6799988877654 445545444
Q ss_pred HHHHHHHH----------HHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 240 IDKLIQVA----------ASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 240 ~~~ll~~l----------~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+..|++++ +.||-++.-.-...|-.++|.|+.-..+
T Consensus 107 LpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~ 152 (169)
T cd00869 107 LPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDD 152 (169)
T ss_pred HHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccC
Confidence 55555543 3444444433345677788877765543
No 260
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=2.1e+02 Score=30.73 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=60.5
Q ss_pred HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhcc
Q 020587 131 SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLK 209 (324)
Q Consensus 131 ~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~ 209 (324)
.+.|.+--|-|+|..++|.++--=+ + +++..+...+ +-|-+||-...-||...|......-.+..|.+-..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~-------~-~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~ 631 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDR-------D-LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMY 631 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCc-------c-hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhh
Confidence 4778888888888877775532111 1 2222333333 33788888888888888887777777777778888
Q ss_pred CCCHHHHHHHHHHHHhhccc
Q 020587 210 NRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 210 hKNp~VR~~aa~~L~~~v~~ 229 (324)
+-|-.||..++--+..++.+
T Consensus 632 D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 632 DTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred CcHHHHHHHHHHHHHHHHhh
Confidence 88888888776555444443
No 261
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=26.44 E-value=6.7e+02 Score=28.09 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHH---------HHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhh
Q 020587 137 SAVCKTAIMTAAD---------IFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPY 207 (324)
Q Consensus 137 S~Vsk~A~~tl~d---------Lf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~ 207 (324)
--.+|+|+.++.+ .++.|-+.|.+++|..-...|+--|.-...|--+.-.|++.|+++-.-.+++..- .
T Consensus 1239 f~~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idta--k 1316 (1636)
T KOG3616|consen 1239 FDLSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTA--K 1316 (1636)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHH--H
Confidence 3467778776543 4455667788889999888888777667788889999999999988777766421 1
Q ss_pred ccCCCHHHHHHHHHHHHhhcc
Q 020587 208 LKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 208 ~~hKNp~VR~~aa~~L~~~v~ 228 (324)
.++--|.+-.+++.+-..++.
T Consensus 1317 ~qnykpil~kyva~yaa~li~ 1337 (1636)
T KOG3616|consen 1317 KQNYKPILDKYVALYAAHLIH 1337 (1636)
T ss_pred hcccHHHHHHHHHHHHHHHHh
Confidence 112224444555555444444
No 262
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=26.38 E-value=1.6e+02 Score=30.52 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHH-H-HccCcchHHHHHHHHHHHHHHHH--------hhhhHHhhHHHHHH
Q 020587 98 VVCEALNNVRRLSIFHKEAMLDILGDVIPLVV-K-SLKNPRSAVCKTAIMTAADIFSA--------YNDRMIDLLDPLLV 167 (324)
Q Consensus 98 ~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~-~-~vksLRS~Vsk~A~~tl~dLf~~--------L~~~m~~~~d~ll~ 167 (324)
-.++||...|.++ +|+|+...|. ++..++ . ...++-|+-.|.|+.|+..-|.. .+-++..++|.+-.
T Consensus 426 ~vleGl~k~~~~~--n~eflGD~Le-vl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S~t~ygk~n~Dl~~fVd~lY~ 502 (657)
T COG5117 426 YVLEGLVKYRKII--NPEFLGDLLE-VLYELLNDNPLDKISSDARRQALLCILTAFEIASATLYGKENYDLGGFVDLLYS 502 (657)
T ss_pred HHHHHHHHHHhhc--CHHHHhHHHH-HHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhhhhhhhhccccHHHHHHHHHH
Confidence 4778888888773 5777754333 333332 2 25678899999999999954433 33344454443332
Q ss_pred HH--------------HHHhcC----ChHHHHHHHHHHHHHHHhhcChhh-hHHHHh-hhccCCCHHHHHHHH--HHHHh
Q 020587 168 QL--------------LLKSSQ----DKRFVCEAAEKALVAMTTWVSPIL-LLPKLQ-PYLKNRNPRIRAKAS--MCFSR 225 (324)
Q Consensus 168 ~L--------------L~Ka~~----sk~FI~e~A~~AL~amv~~vs~~~-ll~~L~-~~~~hKNp~VR~~aa--~~L~~ 225 (324)
.+ +++..+ .+.|+..+ .+... ++..+. -..++|||.-|+.++ ..|..
T Consensus 503 ~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~-----------tt~~e~LlK~~~~~Ffksk~~~~~r~~~f~krl~~ 571 (657)
T COG5117 503 MVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNA-----------TTDNEELLKIVRLLFFKSKQPVHRRHVIFKKRLLY 571 (657)
T ss_pred HhCcccCCcchhhhhhhhhhcCCcccccCccccc-----------cccHHHHHHHHHHHheeccCchHHHHHHHHHHHHH
Confidence 22 123322 24444322 22222 444444 455789998888764 46666
Q ss_pred hcccc
Q 020587 226 SVPRL 230 (324)
Q Consensus 226 ~v~~~ 230 (324)
|+.+.
T Consensus 572 c~s~~ 576 (657)
T COG5117 572 CCSRS 576 (657)
T ss_pred HHccC
Confidence 76664
No 263
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.24 E-value=1.1e+03 Score=27.65 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
+-.++|.|......++.++|-.|...+.-|+..- +...+......-+..+++.||-++.++...|+-..
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC
Confidence 4567888888888889999999999999888642 24456666667778999999999999999998864
No 264
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.02 E-value=3.5e+02 Score=21.76 Aligned_cols=50 Identities=30% Similarity=0.372 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
+..+...+..++...+.-+..+.+.. ..+++.+..++ .+++.|..|=.++
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 48899999999999999544443332 23777788888 5566677776543
No 265
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=1.1e+03 Score=27.67 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhH----HhhHHHHHHHH-HHHhcCC---------------
Q 020587 118 LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRM----IDLLDPLLVQL-LLKSSQD--------------- 176 (324)
Q Consensus 118 ~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m----~~~~d~ll~~L-L~Ka~~s--------------- 176 (324)
.+.|..+++...-..-|+=..|++.|-....+.|..=+ ++. ++.+-.++... +++..++
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k 198 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK 198 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh
Confidence 35566777777777779999999999999998887422 111 22222333333 3333222
Q ss_pred -hHHHHHHHHHHHHHHHhhcChhhhH------------HHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 177 -KRFVCEAAEKALVAMTTWVSPILLL------------PKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 177 -k~FI~e~A~~AL~amv~~vs~~~ll------------~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
.+.++..-...+..+-......++- ..++..++||+|.||.....++..+++.+-..
T Consensus 199 ~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 199 YQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred hHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 1222222222222332332222222 25889999999999999999999999876443
No 266
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=25.69 E-value=4.9e+02 Score=26.30 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=56.8
Q ss_pred HHHccCcch--HHHHHHHHHHHHHHHHhhhhH-HhhHHHHHHHHHHHhcCC-hH----------HHHHHHHHHHHHHHhh
Q 020587 129 VKSLKNPRS--AVCKTAIMTAADIFSAYNDRM-IDLLDPLLVQLLLKSSQD-KR----------FVCEAAEKALVAMTTW 194 (324)
Q Consensus 129 ~~~vksLRS--~Vsk~A~~tl~dLf~~L~~~m-~~~~d~ll~~LL~Ka~~s-k~----------FI~e~A~~AL~amv~~ 194 (324)
+..+.+-++ .+.|+|-=|++.|+++-.+.= -.-+...+|.|.+..... .. .+.+-.+.+..+++..
T Consensus 205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~ 284 (526)
T COG5064 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDV 284 (526)
T ss_pred HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Confidence 333335555 888999999999988765332 233556666666665322 22 3344455666677777
Q ss_pred cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
..|.+++.+|. |.+..|..-+.+.+-+++.
T Consensus 285 g~~~RLvElLs----~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 285 GIPGRLVELLS----HESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCcHHHHHHhc----CccccccCHHHHhhcCeee
Confidence 77777666554 4455554444555555555
No 267
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.52 E-value=8.9e+02 Score=26.26 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh
Q 020587 99 VCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN 155 (324)
Q Consensus 99 r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~ 155 (324)
..|+-..+-+++..+ +++ +...+..+-..+++.|+..-=.|+.++.+|+..+.
T Consensus 281 ~lE~Ar~v~~~~~~nv~~~~----~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 281 FLEAARAVCALSEENVGSQF----VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred hHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 445555555554433 333 34455666677889999999999999999988764
No 268
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=9.7e+02 Score=29.42 Aligned_cols=137 Identities=16% Similarity=0.059 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh--hhHHhhHHHHHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN--DRMIDLLDPLLVQLLL 171 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~--~~m~~~~d~ll~~LL~ 171 (324)
++-+++..++.-+-++-.+....+...+.+.+..+.+.+|.-=|.+-+....++--+...+| ..-..+...+..+.-.
T Consensus 105 ~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~ 184 (2067)
T KOG1822|consen 105 SDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKN 184 (2067)
T ss_pred ccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhh
Confidence 46667777777666664433334444488889999999999999999999988888888887 3333444455555444
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhcChhhh---HHHHh----hhccCCCHHHHHHHHHHHHhhcccc
Q 020587 172 KSSQDKRFVCEAAEKALVAMTTWVSPILL---LPKLQ----PYLKNRNPRIRAKASMCFSRSVPRL 230 (324)
Q Consensus 172 Ka~~sk~FI~e~A~~AL~amv~~vs~~~l---l~~L~----~~~~hKNp~VR~~aa~~L~~~v~~~ 230 (324)
-.-+.+-.++.++-+|+.+|..-.+|..- +..+. .+..--|..+|...++++..++.-.
T Consensus 185 ~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 185 SLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred hhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 44455556999999999999887666442 22222 4444567899999999988877653
No 269
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.13 E-value=2.7e+02 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL 132 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v 132 (324)
||..-..-+..++.|.....-.+.+.+|.+++.++.++
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltcl 267 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCL 267 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHh
Confidence 67777777777777765444456778999988888765
No 270
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=25.10 E-value=4.8e+02 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 020587 160 DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV 195 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v 195 (324)
..+..++..+++.+.+.-.=||..|..+|..+..+-
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 38 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQ 38 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346778888888888888889999999999888444
No 271
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.01 E-value=8.9e+02 Score=29.11 Aligned_cols=95 Identities=19% Similarity=0.057 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhhHHHHhh-----hccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhc
Q 020587 177 KRFVCEAAEKALVAMTTWVSPILLLPKLQP-----YLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQL 251 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~vs~~~ll~~L~~-----~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L 251 (324)
+..-...+-.+..-|..+...+.+.+.+.. ...+-+-.+|..+..++...+-..--- .-+-.++.+-..+...+
T Consensus 1500 ~d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l 1578 (1710)
T KOG1851|consen 1500 VDLAKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLL 1578 (1710)
T ss_pred chHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHH
Confidence 445555666777788877766666664332 223577899999999888777642111 11224888999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 020587 252 SDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 252 ~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+|..-++|+.|..++..|...
T Consensus 1579 ~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1579 NDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999876643
No 272
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.87 E-value=6.3e+02 Score=26.74 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCH
Q 020587 179 FVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLP 256 (324)
Q Consensus 179 FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~p 256 (324)
-+|+....||.-.-.. +++..+|..+.+-+.--....|.-+-.++...+..+...+....--..+-..+..+|.|.++
T Consensus 35 ~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~ 114 (616)
T KOG2229|consen 35 ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDS 114 (616)
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCc
Confidence 3445555555443322 46666777666555433334588888888888886555433333345566677778888887
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020587 257 ESREAARTLLLELQSVY 273 (324)
Q Consensus 257 EvR~~AR~~l~~L~~~~ 273 (324)
. .|+.++.++...|
T Consensus 115 ~---~ak~a~~~~~eL~ 128 (616)
T KOG2229|consen 115 T---AAKMALDTMIELY 128 (616)
T ss_pred h---hHHHHHHHHHHHH
Confidence 6 4444444444444
No 273
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.85 E-value=3e+02 Score=22.19 Aligned_cols=35 Identities=17% Similarity=-0.023 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH
Q 020587 78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF 112 (324)
Q Consensus 78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~ 112 (324)
.++...+..+++=-+.+.+-...+.|..+.+|+++
T Consensus 26 ~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~ 60 (98)
T PF14726_consen 26 VKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS 60 (98)
T ss_pred ccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC
Confidence 47777888888888888899999999999998764
No 274
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=24.78 E-value=70 Score=23.42 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHH---HHHHHHhHcHHHHHHhhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALN---NVRRLSIFHKEAMLDILG 122 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~---~LRrLa~~h~~~l~~~L~ 122 (324)
+....+-..|+.+|...-++||+ .||.|+.+-|++..+-++
T Consensus 12 ~~va~LA~RLE~DdY~~pF~~L~DWhlLRalA~~RpeL~~pY~h 55 (57)
T PF10742_consen 12 EDVAKLAKRLEEDDYPNPFDGLKDWHLLRALAFQRPELVEPYIH 55 (57)
T ss_pred HHHHHHHHhhhhccCCchhhhhhHHHHHHHHHhcChhccchhHh
Confidence 34556777888888888888886 578898888888766544
No 275
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=24.66 E-value=8.6e+02 Score=25.78 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCC------------------HHHHHH----H
Q 020587 163 DPLLVQLLLKSSQDK-RFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRN------------------PRIRAK----A 219 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk-~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKN------------------p~VR~~----a 219 (324)
..++..|+.-...++ .-+...+..+++.++.+++|..++-.+...+..-. -.+..- .
T Consensus 64 WDL~~~l~~~~~~~~~~~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~~L 143 (633)
T PF08568_consen 64 WDLPKLLLPFLPSSEISPCVDCCMKCLEELARLGNPKELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFYCL 143 (633)
T ss_pred ccCHHHHHHHhhhhhcchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccccccccccccccccchhhhHHHHHHH
Confidence 345555555443322 46778899999999999999998765544443222 122222 4
Q ss_pred HHHHHhhcccccccchhhc---cHHHHHHHHHHhccCCCHHHHHHH-HHHHH
Q 020587 220 SMCFSRSVPRLGVEGIKEY---GIDKLIQVAASQLSDQLPESREAA-RTLLL 267 (324)
Q Consensus 220 a~~L~~~v~~~g~~~i~~~---~~~~ll~~l~~~L~D~~pEvR~~A-R~~l~ 267 (324)
...|..++.|++...--.| .+..++..+...-.....+.-... |+++.
T Consensus 144 l~~l~~~l~ri~t~~ps~Fl~~~l~~i~~~~~~~~~~~~~~~~~~~L~~l~~ 195 (633)
T PF08568_consen 144 LELLQIVLKRIQTKYPSRFLAMALSAILNFLKNNPSEETIEDDEFVLRRLYG 195 (633)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 6788888888877544333 355555555554422233444444 44443
No 276
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=24.57 E-value=9.4e+02 Score=26.24 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh
Q 020587 78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
.||-..--.+++.|-..|=.++-.-++.|-.+..+.|.-+ ....|.+-+..++.|. .+.--.+-++-.|...+ .
T Consensus 269 ~D~~~~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv--~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~--s 342 (700)
T KOG2137|consen 269 SDPGLKALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARV--LFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGL--S 342 (700)
T ss_pred CCchhhhhhhcccccccCcHHHHHHHHHHHHhhccCCHHH--HHHhhhhHHHHHhccc--cccccccchhhhhhhcc--c
Confidence 3443333344555555566666666666666655555433 2444555555554221 11111122222222221 1
Q ss_pred HHhhHHHHHHHHHHHhc--C---ChHHHHHHHHHHHHHHHhhcChhh----hHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 158 MIDLLDPLLVQLLLKSS--Q---DKRFVCEAAEKALVAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~--~---sk~FI~e~A~~AL~amv~~vs~~~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
-..|.+.+++.|..-.. + .--||-| =++.+.+.+++.. ++|.|...++.-..++...+.+.+....+
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e----~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e 418 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASDPKQALLFILE----NMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAE 418 (700)
T ss_pred hhhhhhhhhHHHHHHhccCCcccchhhHHh----hHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHH
Confidence 12334444554443332 1 1223333 2455666677755 56667788888888899999888888888
Q ss_pred cccccchhhccHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 229 RLGVEGIKEYGIDKLIQVAAS-QLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 229 ~~g~~~i~~~~~~~ll~~l~~-~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.++...+. ..|++.+.. ++.-.+..++...--++..|.+-.+..
T Consensus 419 ~iD~~~vk----~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 419 SIDVPFVK----QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred hccHHHHH----HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 87755444 334444432 345556777777776776666444433
No 277
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.50 E-value=4.5e+02 Score=28.35 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587 97 VVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS 173 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka 173 (324)
..|+.+|..|=.++..+|..+-..++ .+...|+++++ |--..|.-.|+.++.-|.-.....+.+++..++.....-+
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 56999999999998888776654443 46667777776 6777888899999999988888899999999888887665
No 278
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=2.4e+02 Score=30.72 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF 112 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~ 112 (324)
+..|.-+.+.+++.|=.-+-.||+.+|+..+.
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irs 78 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRS 78 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 34567788889999999999999999998774
No 279
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.97 E-value=1.1e+02 Score=18.93 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=17.5
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
.++.|...+++.++.++..++..|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3444444455667788887777776553
No 280
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=23.89 E-value=7.8e+02 Score=26.08 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=57.2
Q ss_pred HHHHHhhcChhhhHH---HHhhhccCCC-HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 020587 188 LVAMTTWVSPILLLP---KLQPYLKNRN-PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAAR 263 (324)
Q Consensus 188 L~amv~~vs~~~ll~---~L~~~~~hKN-p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR 263 (324)
+..+++...|..+.. .+...+++.. ..+|-.++.+|..+-+..-++.....-.+.+-..-.-+|.|+++-+++.|-
T Consensus 465 ~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 465 LSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 345566666666444 3455554333 348888889999888876666554445777777888999999999999999
Q ss_pred HHHH
Q 020587 264 TLLL 267 (324)
Q Consensus 264 ~~l~ 267 (324)
.+|.
T Consensus 545 eAF~ 548 (559)
T PF14868_consen 545 EAFG 548 (559)
T ss_pred HHHH
Confidence 7773
No 281
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=23.57 E-value=7.9e+02 Score=24.99 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=72.8
Q ss_pred CCHHH--HHHHHH-HHHHHHhHcHHHHH--HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh-hHHhhHHHHHH
Q 020587 94 KDWVV--VCEALN-NVRRLSIFHKEAML--DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND-RMIDLLDPLLV 167 (324)
Q Consensus 94 ~dW~~--r~eaL~-~LRrLa~~h~~~l~--~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~-~m~~~~d~ll~ 167 (324)
.-|+. .+-||- .|+.+..++|..+. +++..+.-..-+.+.+=. ---.|...+..++..+.. .+++|+..++.
T Consensus 168 ~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~ 245 (435)
T PF03378_consen 168 ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLKQIFT 245 (435)
T ss_dssp GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHHHHHH
T ss_pred chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 35875 455555 33444456666553 344444443334444322 225688899999999975 68999999999
Q ss_pred HHHHHhcCC--hHHHHH-----------HHHHHHHHHHhhcChhh---hHHH-HhhhccC-CCHHHHHHHHHHHHhhcc
Q 020587 168 QLLLKSSQD--KRFVCE-----------AAEKALVAMTTWVSPIL---LLPK-LQPYLKN-RNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 168 ~LL~Ka~~s--k~FI~e-----------~A~~AL~amv~~vs~~~---ll~~-L~~~~~h-KNp~VR~~aa~~L~~~v~ 228 (324)
.||.|...+ .+|++. ..-..|...+..+.+.- ++.. +.+.+++ .++.=|.-++.-+.+++-
T Consensus 246 lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~ 324 (435)
T PF03378_consen 246 LLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLC 324 (435)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHh
Confidence 999998643 444432 23334455556665532 3332 2344444 344455555555666553
No 282
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=4.3e+02 Score=31.40 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-hHHHHHHHHHHHhcCC-h
Q 020587 100 CEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-LLDPLLVQLLLKSSQD-K 177 (324)
Q Consensus 100 ~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-~~d~ll~~LL~Ka~~s-k 177 (324)
..||..+--|-...-+.+...|+.+.-.+..+++...++++|.+..|+..|....|..|.. .-|.++..+..-+.-| -
T Consensus 1246 ~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p 1325 (1514)
T KOG0929|consen 1246 NHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLP 1325 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCc
Confidence 3444444444444455566778888889999999999999999999999999999987743 2333333333221111 0
Q ss_pred HH-------------------------------HHHHHHHHHHHHHhhcChhhhHHH---Hh---hhcc--CCCHHHHHH
Q 020587 178 RF-------------------------------VCEAAEKALVAMTTWVSPILLLPK---LQ---PYLK--NRNPRIRAK 218 (324)
Q Consensus 178 ~F-------------------------------I~e~A~~AL~amv~~vs~~~ll~~---L~---~~~~--hKNp~VR~~ 218 (324)
.| -.+. ..+.-|..+++...++.+ |. ..++ +-+-..|.+
T Consensus 1326 ~~l~~~~~~~~~~~~~~e~~~~~~~~v~~~~~~~k~~--~~~~~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~ 1403 (1514)
T KOG0929|consen 1326 HELLTWRTMSDISSEQNELSQTISNIVFYPATESKED--TDLLGMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTK 1403 (1514)
T ss_pred HHHhcccccCCCccccccccccccccccccccchHHH--HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 00 0111 335577777777775542 22 3333 233455554
Q ss_pred HHHHHHhhcccccccchhhc---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 219 ASMCFSRSVPRLGVEGIKEY---GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 219 aa~~L~~~v~~~g~~~i~~~---~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.-+. .+... .+.++.. .....+..+-+++.|.+...-+...+++....++.....
T Consensus 1404 l~~~---~~~~~-~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~~~i~~~l~~~c~~~l~~y~ 1461 (1514)
T KOG0929|consen 1404 LWRA---GKGSQ-KPNLLRQETSSLACYLDILFRLLKDDPRVSEEIESRLVTVCSEVLKGYL 1461 (1514)
T ss_pred HHHh---cccCC-CcchhhHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHH
Confidence 4222 12221 2224433 466677777778877776666777777777666665544
No 283
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.22 E-value=3.8e+02 Score=21.24 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 203 KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 203 ~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.+...++...|.-|-....+++.+++..+.+.-..+ ...+.+.........++.+|..-++++ ++|.+.
T Consensus 41 ~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~-~~~~~~~f~~~~~~~~~~~r~kl~rl~----~iW~~~ 109 (114)
T cd03562 41 IIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFF-SEFLVPLFLDAYEKVDEKTRKKLERLL----NIWEER 109 (114)
T ss_pred HHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHH----HHccCC
Confidence 333444333444444444555555555444322212 222344444445578899998888777 455443
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.92 E-value=4.1e+02 Score=24.37 Aligned_cols=59 Identities=14% Similarity=-0.038 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH-hccC-CCHHHHHHHHHHHHHHH
Q 020587 212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS-QLSD-QLPESREAARTLLLELQ 270 (324)
Q Consensus 212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~-~L~D-~~pEvR~~AR~~l~~L~ 270 (324)
|+.+|..++.++.++--.........-....++..+.. .... .++|+.+-+-.++..|.
T Consensus 170 ~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 170 NKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 55566666666555533322221111112224444444 2322 57888887777777777
No 285
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=22.76 E-value=7.1e+02 Score=28.66 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhhcChhhhHH----HHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587 161 LLDPLLVQLLLKSS--QDKRFVCEAAEKALVAMTTWVSPILLLP----KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~--~sk~FI~e~A~~AL~amv~~vs~~~ll~----~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~ 234 (324)
.++.++-.++.|.+ +++.-++..|..-|.+...+|...-+.+ +|+..+.++-..||.+.+.-|..+..+- .+
T Consensus 572 ~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~--pr 649 (1529)
T KOG0413|consen 572 RVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRD--PR 649 (1529)
T ss_pred HHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhC--ch
Confidence 35667777776654 5799999999999999999998766544 5678888999999999999998877652 22
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHH-HHHHHHhhhcCC
Q 020587 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLL-LELQSVYEKSHD 278 (324)
Q Consensus 235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l-~~L~~~~~~~a~ 278 (324)
+... -.+-+.++.-.++|....+-+.|++.+ ..|-.+|...++
T Consensus 650 ~~~~-~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~d 693 (1529)
T KOG0413|consen 650 LFSL-SSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSD 693 (1529)
T ss_pred hhhh-hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 2222 345556677788899999999999944 455566655554
No 286
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.71 E-value=7.1e+02 Score=25.72 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhcc--CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCC
Q 020587 177 KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLK--NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~--hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~ 254 (324)
..++|-+|-.||..+...+ |..+.+.+.+-.. ..++.||..+...|..+=.. ...+-..+...-.|.
T Consensus 493 ~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~----------~~~l~~ia~~l~~E~ 561 (574)
T smart00638 493 STFIRLAAILALRNLAKRD-PRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPS----------VALLQRIAELLNKEP 561 (574)
T ss_pred CHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCC----------HHHHHHHHHHHhhcC
Confidence 5788888888888766533 3444444443332 56778888887776655321 222333334444677
Q ss_pred CHHHHHHHH
Q 020587 255 LPESREAAR 263 (324)
Q Consensus 255 ~pEvR~~AR 263 (324)
+.+|+.+..
T Consensus 562 ~~QV~sfv~ 570 (574)
T smart00638 562 NLQVASFVY 570 (574)
T ss_pred cHHHHHHhH
Confidence 788776654
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.30 E-value=8.7e+02 Score=25.03 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=66.1
Q ss_pred HHHHHHHHccCc----chHHHHHHHHHHHHHHHHhhhhHH----hhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhh
Q 020587 124 VIPLVVKSLKNP----RSAVCKTAIMTAADIFSAYNDRMI----DLLDPLLVQLLLKSSQDK-RFVCEAAEKALVAMTTW 194 (324)
Q Consensus 124 iv~~l~~~vksL----RS~Vsk~A~~tl~dLf~~L~~~m~----~~~d~ll~~LL~Ka~~sk-~FI~e~A~~AL~amv~~ 194 (324)
++..+...+++. ...+-..|+++++.|...+...-. ..++.+++.|...+.+.. +-=.+.....|.++- |
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-N 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-N 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-c
Confidence 444555555543 335667788888888875442211 112333333333222110 000011222333332 3
Q ss_pred cChhhhHHHHhh---hccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 195 VSPILLLPKLQP---YLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 195 vs~~~ll~~L~~---~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
+.....++.|.+ +-...++.+|..+...|-++.... ++ ...+.+++... =.+-++|+|-+|--++.
T Consensus 473 ~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-p~----~v~~~l~~i~~--n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 473 AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-PR----KVQEVLLPIYL--NRAEPPEVRMAAVLVLM 541 (574)
T ss_pred cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-ch----HHHHHHHHHHc--CCCCChHHHHHHHHHHH
Confidence 434444444433 334566789988888777655432 11 11333443331 12456999999876664
No 288
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.75 E-value=8.7e+02 Score=24.82 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHh--hhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---
Q 020587 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAY--NDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--- 199 (324)
Q Consensus 125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L--~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--- 199 (324)
++.++..+++....|---+|..++-+...- ++.+.+.=+.+++.|....-+...-+.=.|..||..+.....+++
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 466777788888888778888888877653 455555556788888877655444455556667776554444433
Q ss_pred ---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHh
Q 020587 200 ---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQLSDQLPE-SREAARTLLLELQSVY 273 (324)
Q Consensus 200 ---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~D~~pE-vR~~AR~~l~~L~~~~ 273 (324)
.+|.+..-+++-....-.....|+ ..+..+.+.+. .-.-+++-+..+|.-++.| +.-+|-..+|-|-..|
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCI----rnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACI----RNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHH----hhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 344555555544433333333333 22222211111 0112344455566666655 9999999999887766
Q ss_pred hhcC
Q 020587 274 EKSH 277 (324)
Q Consensus 274 ~~~a 277 (324)
++.-
T Consensus 366 e~n~ 369 (550)
T KOG4224|consen 366 EHNV 369 (550)
T ss_pred hhhh
Confidence 6543
No 289
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=7.5e+02 Score=29.34 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=86.5
Q ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-----LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL 199 (324)
Q Consensus 125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-----~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ 199 (324)
...+.+.+.|-|-.|=.-||+|+=.+|..-|..+-+ -+..++-+||++..-.+ +.|--.+=+
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~--~~ewngkei----------- 1065 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN--VSEWNGKEI----------- 1065 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--hhhhcchhH-----------
Confidence 356788999999999999999999999887766544 46778888887654322 111111111
Q ss_pred hHHHHhhhccCCCHHHHHHHHHHHHhhcccc-cccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHhhhcC
Q 020587 200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRL-GVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ-SVYEKSH 277 (324)
Q Consensus 200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~-g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~-~~~~~~a 277 (324)
+..-..-...+-...++.+..-.+-+ ...++. .+-+.+++.+.+++.|.++|+--+|-++|+.+. ++.....
T Consensus 1066 -----qkqwtet~~ltisgIaklf~e~fk~llnln~f~-~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ 1139 (1610)
T KOG1848|consen 1066 -----QKQWTETSCLTISGIAKLFSENFKLLLNLNGFL-DVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGK 1139 (1610)
T ss_pred -----hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhcc
Confidence 00000000001111111111111100 001111 147889999999999999999999999999665 3333322
Q ss_pred CCCC-CCCCCCcchhHHHHHHHhcCC
Q 020587 278 DSAP-ATVSDSPEMDSWENFCQSKLS 302 (324)
Q Consensus 278 ~~~~-~~~~~~~~~~~w~~~~~~~l~ 302 (324)
. +. .+.--..--..|+.||+.+-+
T Consensus 1140 l-n~~~~~k~n~vf~~y~~~~~~~ss 1164 (1610)
T KOG1848|consen 1140 L-NATFTLKINLVFINYGRFCEVSSS 1164 (1610)
T ss_pred c-cchHHHHhhhhhhhHhhhcccccc
Confidence 1 10 000001123567777776655
No 290
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=21.24 E-value=6.7e+02 Score=23.27 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc-c----h-h-hccHHHHHHHHHHh
Q 020587 182 EAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE-G----I-K-EYGIDKLIQVAASQ 250 (324)
Q Consensus 182 e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~-~----i-~-~~~~~~ll~~l~~~ 250 (324)
+.+..++..+++.+- ..+++.++..-..||..+++.+... . + + ..|++.++.++...
T Consensus 115 e~~~~~f~~lc~~l~------------~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~a 178 (255)
T PF10350_consen 115 ESVYPGFTALCRRLW------------SSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSA 178 (255)
T ss_pred HHHHHHHHHHHHHHh------------cCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhc
Confidence 566666666544332 2455666666666666666655544 1 1 1 12566666666543
No 291
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=21.13 E-value=7.2e+02 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSI 111 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~ 111 (324)
|..+..+++.|.+.+|.+...||..++.+..
T Consensus 2 E~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~ 32 (257)
T PF08045_consen 2 ESLLSLAFDNLYSEDTPKIRKGLRQLEGLLA 32 (257)
T ss_pred chHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999998754
No 292
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=20.99 E-value=1.2e+03 Score=26.09 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=97.8
Q ss_pred HHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHH--------hhHHHHHHHHHHHh--
Q 020587 105 NVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMI--------DLLDPLLVQLLLKS-- 173 (324)
Q Consensus 105 ~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~--------~~~d~ll~~LL~Ka-- 173 (324)
.++++....|+.+...++..+-.-+...++-|=+..-.|+-.+--+.+.++ +.+. ..+-..+..|+...
T Consensus 422 fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv 501 (980)
T KOG2021|consen 422 FQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQV 501 (980)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccc
Confidence 344566667887766666665555566667777778888766555555554 2221 01111122222221
Q ss_pred -cCChHHHHHHHHHHHHHHHhh-----cChhh---hHHHHh--hhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 174 -SQDKRFVCEAAEKALVAMTTW-----VSPIL---LLPKLQ--PYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 174 -~~sk~FI~e~A~~AL~amv~~-----vs~~~---ll~~L~--~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
+-+..-|.=. -+..++.+ ..+++ ++.... .|+.|+|-.||..+..++++.++-+-.. +..+ .+.
T Consensus 502 ~~h~h~lVqLl---fmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq-lvpf-ie~ 576 (980)
T KOG2021|consen 502 LAHDHELVQLL---FMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ-LVPF-IEE 576 (980)
T ss_pred ccCCchHHHHH---HHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH-HHHH-HHH
Confidence 1122222111 12222222 12222 333322 7888999999999999999998864221 2223 555
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVL 310 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~ 310 (324)
++..+..+|+-..|..-...++....=.+.|=..+-+- .-...+..+|.=..||..-+.|.-.+.++
T Consensus 577 iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGv-iI~l~n~paE~qaay~~~litpl~~~~~i 643 (980)
T KOG2021|consen 577 ILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGV-IITLNNSPAELQAAYANTLITPLILDQII 643 (980)
T ss_pred HHHHHHHHHcCcCCCcCccccccccccccceeeecceE-EEeCCCCCHHHHHHHHhcccChHHHHHHH
Confidence 55555555543332221111111100000000000000 00222335677888999888887666544
No 293
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=20.73 E-value=1.9e+02 Score=29.46 Aligned_cols=86 Identities=23% Similarity=0.191 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCC-HHHHHHHHHHHHhhccccccc--chhhccHHHHHHHHHHhccC
Q 020587 177 KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRN-PRIRAKASMCFSRSVPRLGVE--GIKEYGIDKLIQVAASQLSD 253 (324)
Q Consensus 177 k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKN-p~VR~~aa~~L~~~v~~~g~~--~i~~~~~~~ll~~l~~~L~D 253 (324)
++|-+|-|.+--+- --.++..|...++..| |.+-+-+|-=+...++..... -+..+|- -+.+.++++-
T Consensus 350 e~FW~eNa~rlnen------nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~gg---Ke~vM~Llnh 420 (442)
T KOG2759|consen 350 EKFWRENADRLNEN------NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGG---KERVMNLLNH 420 (442)
T ss_pred cchHHHhHHHHhhc------cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhch---HHHHHHHhcC
Confidence 45555555543221 2236666666666555 666655555555555543221 1111211 1345678999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 020587 254 QLPESREAARTLLLELQS 271 (324)
Q Consensus 254 ~~pEvR~~AR~~l~~L~~ 271 (324)
.+|+||++|-.+++.|+.
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999999988774
No 294
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.65 E-value=9e+02 Score=26.10 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc-cHHHHHHHHHHhccCCC
Q 020587 179 FVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY-GIDKLIQVAASQLSDQL 255 (324)
Q Consensus 179 FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~-~~~~ll~~l~~~L~D~~ 255 (324)
|+......+++..+.-=.| ..++..|..++.. +.-|-.+..+|..++....+. +..- ..+.+-..+.-+..|.+
T Consensus 48 ~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t~Lf~~LLk~L~~D~~ 124 (668)
T PF04388_consen 48 YLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPW-LYKILQTPLFKSLLKCLQFDTS 124 (668)
T ss_pred HhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCch-HHHHhcChhHHHHHHHHhhccc
Confidence 4444455666666544455 5688888888874 457778888888888875443 2221 22222223333346888
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020587 256 PESREAARTLLLELQSVYE 274 (324)
Q Consensus 256 pEvR~~AR~~l~~L~~~~~ 274 (324)
.-+=..|-.++.+|.-+.+
T Consensus 125 ~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 125 ITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 8887777777766655444
Done!