Query 020587
Match_columns 324
No_of_seqs 151 out of 303
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.9 1E-23 3.4E-28 190.7 17.9 214 86-299 19-233 (242)
2 2qk1_A Protein STU2; STU2P, XM 99.9 1.9E-23 6.5E-28 192.4 13.4 229 65-299 4-248 (249)
3 4ffb_C Protein STU2; tubulin f 99.8 3.8E-18 1.3E-22 157.8 18.1 191 87-277 14-218 (278)
4 2of3_A ZYG-9; multifunctional 99.7 4.6E-15 1.6E-19 138.4 21.2 183 86-274 50-239 (266)
5 2iw3_A Elongation factor 3A; a 99.3 6.4E-11 2.2E-15 127.4 16.6 183 83-275 134-328 (986)
6 1b3u_A Protein (protein phosph 99.1 7.4E-09 2.5E-13 102.1 19.1 178 84-270 404-586 (588)
7 1b3u_A Protein (protein phosph 98.9 2.4E-08 8.1E-13 98.4 16.4 184 86-275 285-474 (588)
8 4fdd_A Transportin-1; heat rep 98.9 7E-08 2.4E-12 101.2 20.7 192 82-275 215-433 (852)
9 1ibr_B P95, importin beta-1 su 98.9 9.8E-08 3.3E-12 91.1 19.7 191 84-275 219-441 (462)
10 4db6_A Armadillo repeat protei 98.9 8.8E-08 3E-12 82.8 17.2 186 83-269 13-207 (210)
11 2bpt_A Importin beta-1 subunit 98.8 3.5E-07 1.2E-11 94.5 21.6 192 83-275 225-444 (861)
12 4hxt_A De novo protein OR329; 98.8 5.6E-07 1.9E-11 78.9 18.8 192 83-275 45-245 (252)
13 2bpt_A Importin beta-1 subunit 98.8 1.6E-07 5.6E-12 96.9 17.5 192 82-274 597-814 (861)
14 4hxt_A De novo protein OR329; 98.8 7.8E-07 2.7E-11 78.0 18.9 188 83-271 3-199 (252)
15 1u6g_C TIP120 protein, CAND1; 98.7 6.6E-07 2.3E-11 97.4 22.1 190 87-277 379-604 (1230)
16 1qgr_A Protein (importin beta 98.7 2.3E-07 7.7E-12 96.0 17.5 189 84-272 651-872 (876)
17 4fdd_A Transportin-1; heat rep 98.7 5.4E-07 1.8E-11 94.4 20.4 188 84-275 258-475 (852)
18 4db8_A Armadillo-repeat protei 98.7 2.6E-07 8.8E-12 81.9 15.3 188 82-270 12-208 (252)
19 1qgr_A Protein (importin beta 98.7 8.2E-07 2.8E-11 91.8 20.5 193 83-276 218-442 (876)
20 1u6g_C TIP120 protein, CAND1; 98.7 5.2E-07 1.8E-11 98.2 19.7 190 86-275 438-683 (1230)
21 4db8_A Armadillo-repeat protei 98.7 4.8E-07 1.7E-11 80.1 15.7 185 84-269 56-249 (252)
22 3ltm_A Alpha-REP4; protein eng 98.6 1.1E-06 3.9E-11 76.2 15.7 168 81-274 18-206 (211)
23 2jdq_A Importin alpha-1 subuni 98.6 1.4E-06 4.8E-11 83.1 16.4 193 82-274 192-393 (450)
24 2jdq_A Importin alpha-1 subuni 98.6 1.9E-06 6.5E-11 82.1 17.0 188 84-275 236-444 (450)
25 1wa5_B Importin alpha subunit; 98.5 1.6E-06 5.6E-11 85.8 16.6 193 83-275 258-461 (530)
26 2qk2_A LP04448P; mini spindles 98.5 1.5E-06 5.3E-11 77.6 14.8 149 82-236 56-213 (242)
27 3ltj_A Alpharep-4; protein eng 98.5 2.2E-06 7.4E-11 73.8 15.2 120 82-225 14-133 (201)
28 3ltm_A Alpha-REP4; protein eng 98.5 3.2E-06 1.1E-10 73.3 16.3 121 123-269 50-170 (211)
29 3ltj_A Alpharep-4; protein eng 98.5 5.7E-06 1.9E-10 71.1 17.4 152 83-270 46-197 (201)
30 1ibr_B P95, importin beta-1 su 98.5 6.2E-06 2.1E-10 78.5 18.4 193 83-275 129-361 (462)
31 1wa5_B Importin alpha subunit; 98.5 3.3E-06 1.1E-10 83.6 16.9 189 84-275 301-511 (530)
32 2qk1_A Protein STU2; STU2P, XM 98.5 3.1E-06 1.1E-10 77.2 14.6 156 82-238 60-230 (249)
33 4b8j_A Importin subunit alpha- 98.4 4.1E-06 1.4E-10 82.6 16.0 193 83-275 245-447 (528)
34 1oyz_A Hypothetical protein YI 98.3 1.4E-05 4.9E-10 72.1 16.0 127 83-224 24-153 (280)
35 1xqr_A HSPBP1 protein; armadil 98.3 2.3E-05 7.8E-10 73.6 16.8 191 79-272 25-239 (296)
36 4b8j_A Importin subunit alpha- 98.3 1.9E-05 6.4E-10 77.9 16.9 185 84-268 288-493 (528)
37 1oyz_A Hypothetical protein YI 98.1 9.2E-05 3.2E-09 66.8 16.9 163 83-268 55-218 (280)
38 4db6_A Armadillo repeat protei 98.1 9.2E-05 3.2E-09 63.5 16.0 146 83-228 55-209 (210)
39 2iw3_A Elongation factor 3A; a 98.1 1.6E-05 5.6E-10 85.7 12.3 148 123-274 54-207 (986)
40 2vgl_B AP-2 complex subunit be 98.1 8.6E-05 2.9E-09 75.2 16.9 176 82-270 13-188 (591)
41 2vgl_B AP-2 complex subunit be 98.1 6.7E-05 2.3E-09 76.0 15.8 183 86-275 125-315 (591)
42 3tpo_A Importin subunit alpha- 98.0 0.00016 5.4E-09 72.0 17.4 196 81-276 250-454 (529)
43 3ul1_B Importin subunit alpha- 98.0 6.5E-05 2.2E-09 74.6 14.2 195 81-275 231-434 (510)
44 3tpo_A Importin subunit alpha- 98.0 0.00041 1.4E-08 69.0 19.0 188 85-275 296-498 (529)
45 1xqr_A HSPBP1 protein; armadil 98.0 0.00073 2.5E-08 63.2 19.4 188 84-275 83-288 (296)
46 1jdh_A Beta-catenin; beta-cate 97.8 0.0018 6.3E-08 62.8 20.2 183 83-270 60-294 (529)
47 3ul1_B Importin subunit alpha- 97.8 0.00077 2.6E-08 66.9 17.0 189 84-275 276-479 (510)
48 2z6g_A B-catenin; FULL-length, 97.6 0.0035 1.2E-07 65.7 20.1 182 84-270 194-427 (780)
49 3b2a_A TON_1937, putative unch 97.6 0.0056 1.9E-07 56.1 18.3 180 82-267 33-214 (265)
50 2z6h_A Catenin beta-1, beta-ca 97.6 0.0063 2.2E-07 61.7 20.7 185 82-271 56-292 (644)
51 1jdh_A Beta-catenin; beta-cate 97.5 0.0051 1.8E-07 59.6 17.5 142 83-227 18-171 (529)
52 1w63_A Adapter-related protein 97.4 0.00047 1.6E-08 70.3 9.6 171 84-270 36-207 (618)
53 2z6h_A Catenin beta-1, beta-ca 97.3 0.0078 2.7E-07 61.0 17.7 146 83-228 15-169 (644)
54 3tjz_B Coatomer subunit gamma; 97.3 0.0026 9E-08 61.2 13.3 182 75-271 17-205 (355)
55 2z6g_A B-catenin; FULL-length, 97.2 0.0061 2.1E-07 63.8 16.1 180 84-270 117-304 (780)
56 3now_A UNC-45 protein, SD10334 97.2 0.0072 2.5E-07 64.1 16.3 189 84-274 582-785 (810)
57 3nmw_A APC variant protein; AR 97.0 0.03 1E-06 53.5 17.3 187 84-272 129-335 (354)
58 2db0_A 253AA long hypothetical 97.0 0.055 1.9E-06 48.2 17.4 171 82-270 32-209 (253)
59 2vgl_A Adaptor protein complex 96.9 0.011 3.7E-07 60.5 13.6 164 95-271 51-216 (621)
60 3now_A UNC-45 protein, SD10334 96.8 0.03 1E-06 59.3 17.1 187 84-273 497-696 (810)
61 1wa5_C Importin alpha RE-expor 96.8 0.05 1.7E-06 57.8 18.6 173 79-254 360-560 (960)
62 3nmz_A APC variant protein; pr 96.8 0.074 2.5E-06 52.6 18.5 187 84-271 245-450 (458)
63 3b2a_A TON_1937, putative unch 96.6 0.18 6E-06 46.2 18.1 184 81-272 74-262 (265)
64 1te4_A Conserved protein MTH18 96.6 0.006 2.1E-07 49.0 7.4 115 126-267 15-129 (131)
65 1xm9_A Plakophilin 1; armadill 96.6 0.015 5.2E-07 56.8 11.7 182 84-269 4-218 (457)
66 1w63_A Adapter-related protein 96.5 0.071 2.4E-06 54.1 16.4 99 129-231 319-417 (618)
67 4ffb_C Protein STU2; tubulin f 96.5 0.09 3.1E-06 47.5 15.5 138 91-233 64-217 (278)
68 2x19_B Importin-13; nuclear tr 96.3 0.062 2.1E-06 56.6 14.9 179 92-275 459-650 (963)
69 3tjz_B Coatomer subunit gamma; 96.2 0.011 3.8E-07 56.8 7.9 146 120-275 136-320 (355)
70 2x1g_F Cadmus; transport prote 96.1 0.079 2.7E-06 56.0 15.0 177 94-275 476-667 (971)
71 2x1g_F Cadmus; transport prote 96.1 0.13 4.5E-06 54.3 16.7 182 87-276 509-727 (971)
72 3tt9_A Plakophilin-2; cell adh 96.1 0.77 2.6E-05 41.2 19.4 183 83-267 9-225 (233)
73 4hat_C Exportin-1; heat repeat 96.0 0.11 3.6E-06 56.5 15.4 139 94-233 465-623 (1023)
74 1wa5_C Importin alpha RE-expor 96.0 0.13 4.6E-06 54.5 16.0 190 79-273 451-672 (960)
75 2x19_B Importin-13; nuclear tr 95.8 0.58 2E-05 49.1 19.7 182 87-275 494-718 (963)
76 2vgl_A Adaptor protein complex 95.7 0.096 3.3E-06 53.4 12.8 59 208-273 300-360 (621)
77 3nmw_A APC variant protein; AR 95.4 0.33 1.1E-05 46.1 14.7 146 84-229 172-335 (354)
78 3nmz_A APC variant protein; pr 95.3 0.66 2.3E-05 45.8 16.9 147 84-230 288-452 (458)
79 1xm9_A Plakophilin 1; armadill 95.3 0.64 2.2E-05 45.1 16.7 110 84-194 46-173 (457)
80 3opb_A SWI5-dependent HO expre 95.2 0.91 3.1E-05 47.8 18.4 186 84-271 500-728 (778)
81 1te4_A Conserved protein MTH18 95.2 0.041 1.4E-06 44.0 6.5 118 83-225 13-130 (131)
82 2of3_A ZYG-9; multifunctional 95.1 0.055 1.9E-06 50.0 7.9 81 79-163 164-247 (266)
83 3oc3_A Helicase MOT1, MOT1; re 95.0 0.11 3.7E-06 53.2 10.1 164 82-267 263-432 (800)
84 3m1i_C Exportin-1; heat repeat 94.6 0.52 1.8E-05 50.6 15.1 170 95-269 426-616 (1049)
85 4ady_A RPN2, 26S proteasome re 94.6 0.5 1.7E-05 50.9 14.7 92 166-267 579-672 (963)
86 3l6x_A Catenin delta-1; cateni 94.6 0.76 2.6E-05 46.9 15.5 186 83-270 49-269 (584)
87 1x5b_A Signal transducing adap 94.4 0.11 3.7E-06 44.5 7.5 81 196-276 49-130 (163)
88 1mhq_A ADP-ribosylation factor 94.1 0.31 1.1E-05 40.9 9.7 79 197-275 36-120 (148)
89 3ldz_A STAM-1, signal transduc 94.1 0.1 3.5E-06 43.4 6.5 80 197-276 40-119 (140)
90 3m1i_C Exportin-1; heat repeat 94.0 0.91 3.1E-05 48.6 15.5 138 93-231 464-621 (1049)
91 3oc3_A Helicase MOT1, MOT1; re 93.8 0.97 3.3E-05 46.4 14.0 152 75-267 167-324 (800)
92 3g2s_A C-terminal fragment of 93.8 0.17 5.9E-06 42.6 7.4 79 197-275 46-130 (149)
93 3gjx_A Exportin-1; transport, 93.6 0.78 2.7E-05 50.0 13.9 138 95-233 492-649 (1073)
94 3opb_A SWI5-dependent HO expre 93.1 5.4 0.00018 42.0 18.9 210 83-299 458-708 (778)
95 4gmo_A Putative uncharacterize 92.5 1.8 6.1E-05 44.4 14.2 78 83-161 35-114 (684)
96 3l6x_A Catenin delta-1; cateni 92.4 5.6 0.00019 40.4 17.5 169 95-267 204-428 (584)
97 3ibv_A Exportin-T; karyopherin 92.3 4.1 0.00014 43.8 17.3 180 94-277 713-927 (980)
98 1juq_A ADP-ribosylation factor 91.9 0.37 1.3E-05 41.4 7.0 79 196-274 47-131 (171)
99 3l9t_A Putative uncharacterize 91.5 4.5 0.00015 36.6 13.9 103 162-268 101-204 (240)
100 3tt9_A Plakophilin-2; cell adh 90.2 7.5 0.00026 34.7 14.3 104 124-227 9-123 (233)
101 3gs3_A Symplekin, LD45768P; he 90.0 9 0.00031 34.8 14.8 137 83-228 16-173 (257)
102 3zyq_A Hepatocyte growth facto 90.0 1.1 3.8E-05 40.0 8.5 83 195-277 41-124 (226)
103 1dvp_A HRS, hepatocyte growth 89.1 0.95 3.2E-05 40.1 7.3 81 196-276 39-120 (220)
104 1elk_A Target of MYB1; superhe 88.6 1.2 4.3E-05 37.4 7.4 80 196-275 50-134 (157)
105 3gs3_A Symplekin, LD45768P; he 86.5 19 0.00063 32.7 14.7 128 163-300 14-146 (257)
106 1upk_A MO25 protein; transfera 86.2 23 0.0008 33.6 17.5 138 86-254 168-313 (341)
107 3o2t_A Symplekin; heat repeat, 85.8 16 0.00053 35.3 14.2 124 97-228 40-183 (386)
108 3l9t_A Putative uncharacterize 85.4 17 0.0006 32.8 13.4 129 122-266 102-235 (240)
109 1vsy_5 Proteasome activator BL 85.4 0.5 1.7E-05 51.1 3.8 124 148-273 739-875 (997)
110 4hat_C Exportin-1; heat repeat 84.3 6.3 0.00021 42.6 11.7 79 121-199 538-624 (1023)
111 3u0r_A Apoptosis inhibitor 5; 81.9 44 0.0015 33.3 18.7 164 81-256 28-191 (507)
112 1sz9_A PCF11 protein; RNA poly 81.1 6.9 0.00024 32.4 8.4 89 175-270 22-113 (144)
113 3grl_A General vesicular trans 80.2 17 0.00057 37.5 12.4 168 79-248 18-218 (651)
114 4gmo_A Putative uncharacterize 80.1 1.7 5.8E-05 44.6 5.1 72 198-272 34-106 (684)
115 3ibv_A Exportin-T; karyopherin 78.3 76 0.0026 33.9 18.5 188 84-274 334-569 (980)
116 1juq_A ADP-ribosylation factor 78.2 30 0.001 29.2 12.9 95 91-193 26-128 (171)
117 1vdy_A Hypothetical protein (R 77.7 3.2 0.00011 34.5 5.2 76 198-277 48-133 (140)
118 1vsy_5 Proteasome activator BL 77.0 9.9 0.00034 41.1 10.1 150 121-274 799-969 (997)
119 2b6c_A Hypothetical protein EF 76.8 17 0.00057 31.8 10.0 114 92-221 99-213 (220)
120 3o2t_A Symplekin; heat repeat, 76.1 25 0.00085 33.9 11.7 94 198-300 62-156 (386)
121 3ldz_A STAM-1, signal transduc 72.8 34 0.0012 27.8 10.3 64 90-161 17-80 (140)
122 1elk_A Target of MYB1; superhe 72.2 32 0.0011 28.6 10.2 64 91-162 29-93 (157)
123 4ady_A RPN2, 26S proteasome re 70.5 1E+02 0.0035 33.2 15.8 97 124-226 430-535 (963)
124 1x5b_A Signal transducing adap 69.5 49 0.0017 27.7 11.8 63 91-161 28-90 (163)
125 3grl_A General vesicular trans 66.5 88 0.003 32.2 13.8 112 83-194 123-242 (651)
126 3jxy_A Alkylpurine DNA glycosy 65.9 21 0.00071 31.4 8.1 116 93-224 106-223 (232)
127 3dad_A FH1/FH2 domain-containi 62.3 1.1E+02 0.0036 29.0 14.4 71 79-159 115-189 (339)
128 1mhq_A ADP-ribosylation factor 61.6 66 0.0023 26.4 12.3 95 90-192 13-115 (148)
129 3rru_A TOM1L1 protein; structu 61.2 7.9 0.00027 32.4 4.1 79 196-274 50-133 (152)
130 3a6p_A Exportin-5; exportin-5, 60.0 2E+02 0.0067 31.3 17.0 87 165-253 530-636 (1204)
131 3g2s_A C-terminal fragment of 59.7 73 0.0025 26.3 10.7 64 91-162 24-87 (149)
132 2d9d_A BAG family molecular ch 57.8 35 0.0012 25.8 6.7 59 214-272 14-75 (89)
133 3gjx_A Exportin-1; transport, 57.0 45 0.0015 36.3 10.2 83 112-198 559-649 (1073)
134 3a6p_A Exportin-5; exportin-5, 56.5 56 0.0019 35.6 11.0 74 98-171 548-632 (1204)
135 4atg_A TAF6; transcription, TF 56.1 92 0.0031 27.0 10.3 132 97-266 23-157 (196)
136 1z9e_A PC4 and SFRS1 interacti 55.0 22 0.00077 29.0 5.7 53 241-304 50-103 (127)
137 3rru_A TOM1L1 protein; structu 52.4 47 0.0016 27.6 7.5 65 90-162 28-93 (152)
138 4flb_A Regulation of nuclear P 52.4 74 0.0025 25.1 8.5 102 161-268 5-109 (132)
139 1dvp_A HRS, hepatocyte growth 51.1 1.2E+02 0.0041 26.2 11.3 63 91-161 18-80 (220)
140 2f31_A Diaphanous protein homo 47.3 1.2E+02 0.0041 26.4 9.8 51 179-229 69-126 (233)
141 3eg5_B Protein diaphanous homo 43.0 1E+02 0.0035 29.2 9.2 51 179-229 135-192 (383)
142 2db0_A 253AA long hypothetical 41.1 1.9E+02 0.0065 25.6 15.3 102 84-193 109-210 (253)
143 2bnx_A Diaphanous protein homo 40.9 1.1E+02 0.0038 29.0 9.1 31 199-229 100-130 (386)
144 1lrv_A LRV, leucine-rich repea 39.9 27 0.00093 31.2 4.4 21 245-266 221-241 (244)
145 1lrv_A LRV, leucine-rich repea 38.6 24 0.00083 31.5 3.8 42 169-221 103-144 (244)
146 4atg_A TAF6; transcription, TF 31.6 1.1E+02 0.0039 26.4 6.9 78 94-189 58-137 (196)
147 3zyq_A Hepatocyte growth facto 28.9 2.9E+02 0.0098 24.0 11.7 64 91-162 21-84 (226)
148 2w9y_A CE-FAR-7, fatty acid/re 27.3 2.6E+02 0.0089 23.0 9.4 86 199-311 46-133 (140)
149 1lsh_A Lipovitellin (LV-1N, LV 27.1 4.8E+02 0.016 27.9 12.2 50 178-228 492-543 (1056)
150 2gyq_A YCFI, putative structur 24.3 3.2E+02 0.011 22.9 9.7 91 179-274 26-119 (173)
151 2gs4_A Protein YCIF; stress pr 22.4 3.4E+02 0.012 22.6 10.5 91 179-274 19-113 (166)
152 1vdy_A Hypothetical protein (R 21.7 1.1E+02 0.0037 25.1 4.6 35 81-115 48-82 (140)
153 1ho8_A Vacuolar ATP synthase s 21.7 1.1E+02 0.0037 30.3 5.4 29 244-272 449-477 (480)
154 3g1o_A Transcriptional regulat 20.1 3.8E+02 0.013 22.3 10.2 15 83-97 48-62 (255)
155 3q0w_A HTH-type transcriptiona 20.0 3.6E+02 0.012 22.1 10.4 18 256-273 186-203 (236)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=1e-23 Score=190.66 Aligned_cols=214 Identities=17% Similarity=0.190 Sum_probs=187.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ 164 (324)
.+++.++++||..|.+|+..|..++..++.+....+.+++..+.+.+ ++.+..|...||.+++.|+..++..|.+|++.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 58888999999999999999999998877665566788999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll 244 (324)
+++.|+.++++.+..||+.|..||..++.+++...+++.|..+++|+|+++|..+..+|..++..+++.......++.++
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~ 178 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876533333488999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHh
Q 020587 245 QVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQS 299 (324)
Q Consensus 245 ~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~ 299 (324)
+.+..+++|.++++|..|..++..+..+++.....+-...-++.+..+...||++
T Consensus 179 p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~ 233 (242)
T 2qk2_A 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233 (242)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986543222222234456666666654
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-23 Score=192.40 Aligned_cols=229 Identities=15% Similarity=0.194 Sum_probs=195.4
Q ss_pred cceeccCCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HHhHcHHHH--HHhhhhHHHHHHHHc-cCcchHHH
Q 020587 65 EVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRR-LSIFHKEAM--LDILGDVIPLVVKSL-KNPRSAVC 140 (324)
Q Consensus 65 ~~~yi~~eeL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRr-La~~h~~~l--~~~L~~iv~~l~~~v-ksLRS~Vs 140 (324)
.++++++.|+.+--.+ .+.+.+.|++|.+|.+|+..|.. ++..+|++. ...+.+++..+.+.+ ++.+..|.
T Consensus 4 ~~d~~~~~~i~~kl~~-----~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~ 78 (249)
T 2qk1_A 4 MASMLPEETILDKLPK-----DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78 (249)
T ss_dssp SCCCCCCBCCGGGSCT-----THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHH
T ss_pred hHhhcChhhhhhhCCh-----hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHH
Confidence 3566677666432223 57888899999999999999999 887677766 456788999999999 89999999
Q ss_pred HHHHHHHHHHHHHhh-hhHH-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc------C-hhhhHHHHhhhccCC
Q 020587 141 KTAIMTAADIFSAYN-DRMI-DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV------S-PILLLPKLQPYLKNR 211 (324)
Q Consensus 141 k~A~~tl~dLf~~L~-~~m~-~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v------s-~~~ll~~L~~~~~hK 211 (324)
..||.+++.|+..++ ..|. +|...+++.+|.++++.+.-|++.+..||++++.++ + ...+++.|..+++||
T Consensus 79 ~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k 158 (249)
T 2qk1_A 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK 158 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC
Confidence 999999999999999 9999 999999999999999999999999999999999999 5 667999999999999
Q ss_pred CHHHHHHHHHHHHhhcccccc--cchhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 020587 212 NPRIRAKASMCFSRSVPRLGV--EGIKEYGI-DKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSP 288 (324)
Q Consensus 212 Np~VR~~aa~~L~~~v~~~g~--~~i~~~~~-~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~ 288 (324)
||++|..+..+|..++...+. ..+.. .+ +.+++.+.++++|.++++|..|..++..+..++|+....+-...-++.
T Consensus 159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~ 237 (249)
T 2qk1_A 159 TPQIRMECTQLFNASMKEEKDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNL 237 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence 999999999999999998765 22322 37 889999999999999999999999999999999976543222233566
Q ss_pred chhHHHHHHHh
Q 020587 289 EMDSWENFCQS 299 (324)
Q Consensus 289 ~~~~w~~~~~~ 299 (324)
+..+..+||++
T Consensus 238 k~~ki~~~~~~ 248 (249)
T 2qk1_A 238 KRKKIEETVKT 248 (249)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 78888888874
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.8e-18 Score=157.79 Aligned_cols=191 Identities=14% Similarity=0.206 Sum_probs=159.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-----HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh------
Q 020587 87 LVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-----LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN------ 155 (324)
Q Consensus 87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-----~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~------ 155 (324)
+-++|.|++|+.|.+|++.|+.+...++... ...+..+...+.+.++|.+.+|...|+.++..++..++
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4578999999999999999999877654332 22467778888999999999999999999999998654
Q ss_pred hhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcCh-hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 156 DRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSP-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 156 ~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
..+..++..+++.|+.| +++.+..+++.+..++..++..+.+ ..+++.|..+++||||++|..+..||..++..+|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 44667889999999999 6999999999999999888877654 668889999999999999999999999999999987
Q ss_pred chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 234 GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 234 ~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
.+.. ..++.+++.+.++++|++++||..|..++..++..+|...
T Consensus 174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 5532 2477889999999999999999999999999998888544
No 4
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.67 E-value=4.6e-15 Score=138.38 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=158.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh---HH-hh
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR---MI-DL 161 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~---m~-~~ 161 (324)
.+...|-++||+.+.+|++.|.......++.+...+.-+.+.+.-.+.+-+.+|...++..+..++..++.. |. .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 556667789999999999999998877888777777766676666666889999999999999999999864 43 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+..++|.|+.|+|+.|.-+|+.+...+..|..-++|.++++.|..+++|||+++|..+..++..++++.|... .
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------L 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------G
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------c
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999872 2
Q ss_pred HHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 242 KLI---QVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 242 ~ll---~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+.+ +.++++++|++++||++|-.++..+..+.|
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 245 999999999999999999999875555544
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.26 E-value=6.4e-11 Score=127.44 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=156.8
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHh
Q 020587 83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMID 160 (324)
Q Consensus 83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~ 160 (324)
.+..+++.|.+ .+|+.++.||+.+.+|+...|+.+...|.++++.+...|.|.+..|.+.|..|+..++..++ ++++|
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~ 213 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER 213 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh
Confidence 35566777754 48999999999999999988999999999999999999999999999999999999999986 78899
Q ss_pred hHHHHHHHHH---------HHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 161 LLDPLLVQLL---------LKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 161 ~~d~ll~~LL---------~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
+++.++.++- ++.+. .+||.+.-..+|.. ++|+|..++..+...++++++..+.++++...
T Consensus 214 ~~~~~~~~~~~p~~~~~~~~~l~~-~tfv~~v~~~~l~~---------~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 214 FIPSLIQCIADPTEVPETVHLLGA-TTFVAEVTPATLSI---------MVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp GHHHHHHHHHCTTHHHHHHHHHTT-CCCCSCCCHHHHHH---------HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHhcChhhhHHHHHHhhc-CeeEeeecchhHHH---------HHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 9998887774 56666 56888877777777 77999999999999999999999999999877
Q ss_pred ccchhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 232 VEGIKEYGIDKLIQVAASQL-SDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.+.....-+++|++.+.+-. +=++||+|+.|.+++..|.++.+.
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 65443322888888887744 456799999999999999999876
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.06 E-value=7.4e-09 Score=102.06 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=146.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..+...+.+.+|..|..++..+..++..- +++ ....+++.+...+++....|-..|+.+++.++..+|..+ +.
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~ 478 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AH 478 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HH
Confidence 445555667889999999999888887532 221 124577888888999999999999999999999998764 46
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
+.+++.|+....+.+.-+|..+-.++..++..+.+. .++|.|...+++.++.||..++..|..++..+|...+
T Consensus 479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--- 555 (588)
T 1b3u_A 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL--- 555 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---
Confidence 788888887777778899999999999999887654 5778888889999999999999999999998876422
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.+.+++.+.++++|.++++|.+|..++..+.
T Consensus 556 -~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 556 -QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 3678888888999999999999999987654
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.92 E-value=2.4e-08 Score=98.44 Aligned_cols=184 Identities=17% Similarity=0.138 Sum_probs=143.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH--HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM--LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l--~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
.++..+.+++|..|..+...+-+++...+... ...++.+++.+...+++....|-+.++.+++.++..+|+.. ..+
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~ 362 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIE 362 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHH
Confidence 34444556667666666666666655432110 12356677778888899999999999999999999998754 356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
.+++.|+..+.+....|+..+-.+|..++..+.. ..++|.|...+++++..+|..++.++..+...+|.+..
T Consensus 363 ~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---- 438 (588)
T 1b3u_A 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---- 438 (588)
T ss_dssp HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC----
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH----
Confidence 6778888888888899999999999999988775 34778888888999999999999999999888876522
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 240 IDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.+.+++.+..++.|.++++|+.|-.++..+...++.
T Consensus 439 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 439 DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 367889999999999999999999999988877664
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.91 E-value=7e-08 Score=101.18 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=158.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHH
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMI 159 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~ 159 (324)
..+..++..+.++++..|..++..+-+|+..+|+.+.+.++.++..+.+.+++.-..|...|+.++..+++. +++.+.
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 456677777888999999999999999999999999999999999999999999899999999988887763 455678
Q ss_pred hhHHHHHHHHHHHh-----------cC-----------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHH
Q 020587 160 DLLDPLLVQLLLKS-----------SQ-----------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPR 214 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka-----------~~-----------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~ 214 (324)
+++..+++.|+..+ ++ ..--+|..|..+|+.+....+. ..+++.|...+++.++.
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~ 374 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHH
Confidence 89999999999887 33 2334788999999999887653 23556677788899999
Q ss_pred HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+|..++..|..+.+..+. .+.. -++.+++.+..++.|.++.+|..|-.++..+-...+.
T Consensus 375 ~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999886543 2333 3788999999999999999999999888877766554
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.90 E-value=9.8e-08 Score=91.13 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=152.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHh--------
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY-------- 154 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L-------- 154 (324)
+..+...+.+.++..|..++..+..++..+++.+.+.+. .++..+...+++.-..|...|+..+..+....
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444567789999999999999999988888878888 89888888889988899999999888887763
Q ss_pred -------------hhhHHhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCC
Q 020587 155 -------------NDRMIDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNR 211 (324)
Q Consensus 155 -------------~~~m~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hK 211 (324)
..-+.+++..+++.|+....+ +.--+|..|..+|..++...+. ..+++.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 112345678899998887753 2346899999999999998762 22455667788899
Q ss_pred CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
++.+|..++..|..+.+..+...+.. .++.+++.+..++.|.++.+|.+|-.++..+...++.
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998544333333 3678999999999999999999999999988887765
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.89 E-value=8.8e-08 Score=82.77 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=140.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
....+...|.++|+..+..|+..|+.|+..+++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3446777788999999999999999999776655443332 578889999999999999999999999875332222222
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
+ ...++.|+....+.+.-+++.|-.+|..++.+... ...++.|...+++.++.+|..++..|..++..- .+
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~ 171 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cH
Confidence 2 23678888888888899999999999998864332 236788888999999999999999999988742 22
Q ss_pred chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
..........++.+..++.+.++++|+.|..++..|
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 111111234677888899999999999999988755
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.81 E-value=3.5e-07 Score=94.45 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=153.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh-----
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND----- 156 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~----- 156 (324)
.+..+...+.+.+|+.|..++..+.+++..+|+.+.+.+. .++..+...+.+....|...|+.++..++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555667889999999999999999988887778888 8888899999999999999999999888877421
Q ss_pred ------------hHHhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHH
Q 020587 157 ------------RMIDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPR 214 (324)
Q Consensus 157 ------------~m~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~ 214 (324)
.+.+++..+++.|+..+.+ +.--++..+..+|..++..... ..+++.+...+++.++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 384 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWR 384 (861)
T ss_dssp HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHH
T ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChh
Confidence 2456778999999988763 2346888999999998887652 33666677888899999
Q ss_pred HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+|..++..+..+.+..+...+..+ ++.+++.+...+.|.++.+|..+-.++..+...++.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~-l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 999999999998875443334333 778999999999999999999998888777766653
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.78 E-value=5.6e-07 Score=78.87 Aligned_cols=192 Identities=20% Similarity=0.129 Sum_probs=145.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+.+...+..++..|..|+..+++.....+ ..+++.++..+++....|...|+.+++.|+..-.......
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466778888999999999999999999887665444333 2478889999999999999999999999985332222222
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
+ ...++.|+....+.+.-++..+-.+|..++...... ..++.|...+++.++.+|..++..|..+...- ..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~ 203 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TS 203 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 2 246788888888888889999999999887653322 27788889999999999999999999988631 11
Q ss_pred chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
......-..+++.+..++.+.++++|+.|-.++..|....+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 111112234678888899999999999999999877765543
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.77 E-value=1.6e-07 Score=96.90 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=153.7
Q ss_pred HHHHHHHhhcCCCCH-HHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLDSKDW-VVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW-~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..+..++..+++.++ ..+..++..+..++....+.+.+.+..+++.+...+++-...+...|+.++++|+..+|..+.+
T Consensus 597 ~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 676 (861)
T 2bpt_A 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRR 676 (861)
T ss_dssp HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHH
T ss_pred HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccc
Confidence 345555666666667 7788888888888776555455678888888888888777889999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccCCC-----------HHHHHHHHH
Q 020587 161 LLDPLLVQLLLKSSQDK--RFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKNRN-----------PRIRAKASM 221 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk--~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~hKN-----------p~VR~~aa~ 221 (324)
+++.+++.|+....+.+ .-+++.+-.++..|+.++... .++|.|...+.+.. ..+|..+..
T Consensus 677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~ 756 (861)
T 2bpt_A 677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLD 756 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999887654 779999999999999877442 46666666665432 568999999
Q ss_pred HHHhhcccccc--cchhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHhh
Q 020587 222 CFSRSVPRLGV--EGIKEYGIDKLIQVAASQLSDQ----LPESREAARTLLLELQSVYE 274 (324)
Q Consensus 222 ~L~~~v~~~g~--~~i~~~~~~~ll~~l~~~L~D~----~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+..++..+|. ..+..+ ++.+++.+.+.+.|. +.++|..|-.++..|...|+
T Consensus 757 ~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~ 814 (861)
T 2bpt_A 757 AYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814 (861)
T ss_dssp HHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC
Confidence 99999988773 223333 788888898888885 89999999999999999883
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.75 E-value=7.8e-07 Score=77.96 Aligned_cols=188 Identities=20% Similarity=0.148 Sum_probs=142.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+.++..+..|+..|+.++..+++...... ..+++.++..+++....|...|+.+++.|...-.......
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 356788899999999999999999999988774443333 3578889999999999999999999999875422222222
Q ss_pred HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
++ ..++.|+....+.+.-+++.|-.+|..++...... ..++.|...+++.++.+|..++..|..+.......
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 22 36777888887888999999999999988643322 36778889999999999999999999988742211
Q ss_pred chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
........+++.+..++.+.++++|..|-.++..|..
T Consensus 163 -~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 163 -IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp -HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 1111123477888889999999999999988876653
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.75 E-value=6.6e-07 Score=97.35 Aligned_cols=190 Identities=12% Similarity=0.136 Sum_probs=154.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhHc-------------------HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHH
Q 020587 87 LVAGLDSKDWVVVCEALNNVRRLSIFH-------------------KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTA 147 (324)
Q Consensus 87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h-------------------~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl 147 (324)
++..+.+.++..|..++..+..+.... ...+...++.+++.+.+.+++-...+-..+|.++
T Consensus 379 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L 458 (1230)
T 1u6g_C 379 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458 (1230)
T ss_dssp HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 334455667888888988888776521 2345667888888888989988888888899999
Q ss_pred HHHHHHhhhhHHhhHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHH
Q 020587 148 ADIFSAYNDRMIDLLDPLLVQLLLKSSQDK--RFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAK 218 (324)
Q Consensus 148 ~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk--~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~ 218 (324)
+++...++..+.++++.+++.++..+.+.+ ..++.++-.++..++....+. .++|.|..+++++++.||..
T Consensus 459 ~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~ 538 (1230)
T 1u6g_C 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 538 (1230)
T ss_dssp HHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHH
Confidence 999999988899999999999999998875 488999999999998876655 46777778889999999999
Q ss_pred HHHHHHhhcccccc------cchhhccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587 219 ASMCFSRSVPRLGV------EGIKEYGIDKLIQVAASQL--SDQLPESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 219 aa~~L~~~v~~~g~------~~i~~~~~~~ll~~l~~~L--~D~~pEvR~~AR~~l~~L~~~~~~~a 277 (324)
+...+..+++.+|. ..+..+ .+.+++.+...+ .|.++++|..|-.++..|...+++..
T Consensus 539 al~~l~~l~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 539 ALLVTQQLVKVIRPLDQPSSFDATPY-IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCCHHH-HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHhcCcccccccchHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh
Confidence 98889888887765 223334 688899988888 89999999999999999988877553
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.74 E-value=2.3e-07 Score=96.05 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=141.1
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC--cchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN--PRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks--LRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
+..++..|.+. +|..+..++..+..|+....+.+.+.+.+++..+...+++ ....+...++.++++++..+|..|.+
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 34445555554 7888999999998887755444556678888888888876 44568889999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHHhhcCh----------------hhhHHHHhhhccCC--
Q 020587 161 LLDPLLVQLLLKSSQDK-----------RFVCEAAEKALVAMTTWVSP----------------ILLLPKLQPYLKNR-- 211 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk-----------~FI~e~A~~AL~amv~~vs~----------------~~ll~~L~~~~~hK-- 211 (324)
+++.+++.|+....... .-+++.+..++..++..... ..+++.|.....+.
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999887665331 37888899999988876532 11233333333565
Q ss_pred CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHH
Q 020587 212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS-QLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~-~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+..||..++.+|..++..+|...+..+-.+.+++.+.. ++.|.++++|..|..++..+.+.
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence 78999999999999999987723433323445555555 88999999999999999877754
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.74 E-value=5.4e-07 Score=94.44 Aligned_cols=188 Identities=19% Similarity=0.162 Sum_probs=148.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhH--cHHHHHHhhhhHHHHHHHHc-----------cC-----------cchHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF--HKEAMLDILGDVIPLVVKSL-----------KN-----------PRSAV 139 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~--h~~~l~~~L~~iv~~l~~~v-----------ks-----------LRS~V 139 (324)
+..++..+++.|...+..|+..+..++.+ ....+.+.+..+++.+...+ .+ ....|
T Consensus 258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v 337 (852)
T 4fdd_A 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence 44455566788999999999999998753 23455667777888887776 33 45568
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccCCCH
Q 020587 140 CKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKNRNP 213 (324)
Q Consensus 140 sk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~hKNp 213 (324)
.+.|..+++.|+..+++. .++.+++.|.....+.+--+|+.|-.+|..+...+.. ..+++.|...+++.++
T Consensus 338 r~~a~~~L~~la~~~~~~---~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp HHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 899999999999999854 4456677777777777899999999999999887643 3477888899999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 214 RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 214 ~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.||..++..+..+.+..+...... ....+++.+.+.+.|.++++|..|-.++..+....+.
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 999999999998887665433222 3788999999999999999999999999877766553
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.73 E-value=2.6e-07 Score=81.89 Aligned_cols=188 Identities=18% Similarity=0.162 Sum_probs=141.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..+..++..|.++|.+.+..|+..|+.+...+++.....+ ..+++.++..+++....|...|+.+++.|...-......
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3466889999999999999999999987765544333222 357888999999988999999999999998643322222
Q ss_pred hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
.++ ..++.|+....+.+.-+++.|-.+|..+..+-... ..++.|...+++.++.+|..++..|.++...-.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 232 37888888888888999999999999887654433 367788889999999999999999999886421
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.......-..+++.+..++.+.++++|..|-.++..|-
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 11111112345677788889999999999988887664
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.71 E-value=8.2e-07 Score=91.85 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=153.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh------
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN------ 155 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~------ 155 (324)
.+..+...+.+.||+.|..++..+-.++..+++.+.+.+. .++..+...+++.-..|...|+.++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 3555566677889999999999999999988888888888 899989888888888899999988888876531
Q ss_pred ---------------hhHHhhHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccC
Q 020587 156 ---------------DRMIDLLDPLLVQLLLKSS-------QDKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKN 210 (324)
Q Consensus 156 ---------------~~m~~~~d~ll~~LL~Ka~-------~sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~h 210 (324)
..+.++++.+++.|+..+. ++.--+|..|..+|..++..++. ..+++.+...+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN 377 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC
T ss_pred ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC
Confidence 1123456788898888875 23456889999999999988753 2355667788889
Q ss_pred CCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 211 RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 211 KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.++.+|..++..+..+.+..+++.+..+ ++.+++.+..+++|.++.+|..|-.++..+...++..
T Consensus 378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 442 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred CChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh
Confidence 9999999999999988876653333333 6789999999999999999999999998888777653
No 20
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.70 E-value=5.2e-07 Score=98.18 Aligned_cols=190 Identities=14% Similarity=0.090 Sum_probs=155.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcch--HHHHHHHHHHHHHHHHhhhh-HHhhH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRS--AVCKTAIMTAADIFSAYNDR-MIDLL 162 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS--~Vsk~A~~tl~dLf~~L~~~-m~~~~ 162 (324)
.+...+.+++|..|..++..+..++...++.+.+.++.+++.+...+++-.. .|...++.+++.++..++.. +.+++
T Consensus 438 ~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l 517 (1230)
T 1u6g_C 438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV 517 (1230)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence 3444588999999999999999998877777777889999999999998764 78889999999999888755 89999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------------hhhHHHHhhhc--cCCCHHHHHHHHHHHHhhc
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------------ILLLPKLQPYL--KNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------------~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v 227 (324)
+.+++.|+....+.+.-|+..+-.++..++..+.+ ..+++.|...+ .+.++.+|..+..++..++
T Consensus 518 ~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 518 QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999977654 35777777777 6788999999999999988
Q ss_pred ccccccchhh--------------------------------------ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 228 PRLGVEGIKE--------------------------------------YGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 228 ~~~g~~~i~~--------------------------------------~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
...|..-... .....+++.+..++.|.+..+|..+-.++..+
T Consensus 598 ~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 598 CNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp HHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8776531100 01356677778888899999999999999988
Q ss_pred HHHhhh
Q 020587 270 QSVYEK 275 (324)
Q Consensus 270 ~~~~~~ 275 (324)
...++.
T Consensus 678 ~~~~~~ 683 (1230)
T 1u6g_C 678 IKNYSD 683 (1230)
T ss_dssp HHHCCT
T ss_pred Hhcccc
Confidence 877764
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.69 E-value=4.8e-07 Score=80.10 Aligned_cols=185 Identities=19% Similarity=0.181 Sum_probs=140.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..++..|.+.++..+..|+..|..|+..+++.-...+. ..++.++..+++....|...|+.+++.|...-.......+
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 345677788889999999999999998866655443332 4788899999999999999999999999765444433333
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587 163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234 (324)
Q Consensus 163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~ 234 (324)
+ ..++.|+..+.+.+.-++..|-.+|..++.+... ..+++.|...+++.++.+|..++..|..++..- ...
T Consensus 136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~ 214 (252)
T 4db8_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 214 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHH
Confidence 3 3788888888888888999999999988864422 336778888899999999999999999998531 111
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.....-...++.+..++.+.++++|..|-.++..|
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11111234678888999999999999998887644
No 22
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.62 E-value=1.1e-06 Score=76.15 Aligned_cols=168 Identities=16% Similarity=0.145 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHH-----------------Hhh--hhHHHHHHHHccCcchHH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAML-----------------DIL--GDVIPLVVKSLKNPRSAV 139 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~-----------------~~L--~~iv~~l~~~vksLRS~V 139 (324)
...+..++..|.++||..|..|+..|.++.... +.++. +.+ .+.++.+...+++....|
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~v 97 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV 97 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH
Confidence 455677888888889988888888877653200 10000 011 123444455555555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHH
Q 020587 140 CKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKA 219 (324)
Q Consensus 140 sk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~a 219 (324)
-..|+.+++.+.. +..++.|+..+.+.+..|+..|-.+|..+ .....++.|...+++.++.||..+
T Consensus 98 r~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a 163 (211)
T 3ltm_A 98 RQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSA 163 (211)
T ss_dssp HHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHH
Confidence 5555555544311 12334444444555566666666666554 233455555555666666666666
Q ss_pred HHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 220 SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 220 a~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+..|..+ +-+..++.+..++.|.++++|..|..++..+...++
T Consensus 164 ~~aL~~~------------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 164 ADALGEI------------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHH------------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHh------------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 6555543 124566667777778888888888887765544433
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.58 E-value=1.4e-06 Score=83.08 Aligned_cols=193 Identities=18% Similarity=0.091 Sum_probs=146.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..+..++..+.+.|+..+..++..|+.|+.+.++...... ..+++.++..+++....|...|+.+++.|..........
T Consensus 192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 271 (450)
T 2jdq_A 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271 (450)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence 3466777788889999999999999999886655443222 357888889999888999999999999998654433322
Q ss_pred hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
.++ .+++.|+..+.+.+.-++..|-.+|..++..... ..+++.|...+++.++.||..++..|.++.....+
T Consensus 272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 351 (450)
T 2jdq_A 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA 351 (450)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 222 4778888888888889999999999988764322 35777888888899999999999999998875333
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
+.+...--..+++.+..++.+.++++|..+-.++..|....+
T Consensus 352 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 352 EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 322222123477888889999999999999988887776554
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.56 E-value=1.9e-06 Score=82.13 Aligned_cols=188 Identities=19% Similarity=0.146 Sum_probs=139.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..++..|.+.+|..+..++..|..|+..+++.....+. .+++.+...+++....|.+.|+.+++.|...-.......+
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556777788999999999999999998877655433332 5788899999999999999999999999864333333333
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
+ .+++.|+..+.+...-++..|..+|..++...++. .+++.|...+++.++.||..++..|..++......
T Consensus 316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 395 (450)
T 2jdq_A 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395 (450)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Confidence 2 57777777777777889999999999998775442 36778888889999999999999999888743221
Q ss_pred ------chhhccHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 234 ------GIKEYGIDKL-----IQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 234 ------~i~~~~~~~l-----l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.+..+ .+.+ ++.+..++.+.+.++|+.|..++. ..|++
T Consensus 396 ~~~~~~~~~~~-~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~---~~~~~ 444 (450)
T 2jdq_A 396 AKRNGTGINPY-CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE---HYFGT 444 (450)
T ss_dssp HHHSCSCCCHH-HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH---HHHCC
T ss_pred hhccccchhHH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCc
Confidence 01111 2222 345566788889999988887775 55543
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.55 E-value=1.6e-06 Score=85.82 Aligned_cols=193 Identities=17% Similarity=0.088 Sum_probs=146.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+.|+..+..++..|..|+...++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus 258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 337 (530)
T 1wa5_B 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 337 (530)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH
Confidence 4667777788889999999999999999877765544443 678889999999999999999999999875433322222
Q ss_pred HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc-
Q 020587 162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV- 232 (324)
Q Consensus 162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~- 232 (324)
++ .+++.|+..+.+.+.-++..|-.+|..++..... ..+++.|...+++.++.+|..++..|..++...+.
T Consensus 338 ~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417 (530)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 22 5778888888888889999999999988764322 24677788888889999999999999998875333
Q ss_pred -cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 233 -EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 233 -~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+.........+++.+..++.+.++++|..+-.++..|....+.
T Consensus 418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222111223677788889999999999999888877766554
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.54 E-value=1.5e-06 Score=77.56 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=123.7
Q ss_pred HHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..+..+...+. +.+-..+..|++.+..|+..-...+.+....+++.+...+++.+..|...|+.++..++..++
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----
Confidence 34555666664 788889999999999998754444567788899999999999999999999999999988653
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
++.+++.|+....+.+..++..+-..|..++....+. .++|.|...+.+.++.||..+..++..+...+|.
T Consensus 131 -~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 131 -LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 5778888888888889999999999999988776433 4778889999999999999999999999998886
Q ss_pred cchh
Q 020587 233 EGIK 236 (324)
Q Consensus 233 ~~i~ 236 (324)
+.+.
T Consensus 210 ~~~~ 213 (242)
T 2qk2_A 210 KAVT 213 (242)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 5443
No 27
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.54 E-value=2.2e-06 Score=73.80 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.....+++.|+++||..|..|+..|.++.. .+.+..++..+++....|-..|+.+++.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 556788899999999999999888876632 1233444455555555555555555544311
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
...++.|+..+.+.+..++..|-.+|..+ .....++.|...+++.++.||..++..|..
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 12233334444444555555555555443 223344555555555555555555555443
No 28
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.54 E-value=3.2e-06 Score=73.31 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHH
Q 020587 123 DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLP 202 (324)
Q Consensus 123 ~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~ 202 (324)
+.++.++..+++....|-..|+.+++.+.. +..++.|+..+.+.+..++..|-.+|..+ .....++
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~ 115 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVE 115 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHH
Confidence 577888899999888888888888877631 23456666667788888999988888765 3356788
Q ss_pred HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 203 KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 203 ~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.|...+++.++.||..++..|..+ |. +..++.+..++.|.++++|..|-.++..+
T Consensus 116 ~L~~~l~d~~~~vr~~a~~aL~~~----~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 116 PLIKALKDEDWFVRIAAAFALGEI----GD--------ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH----CC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888999999999999888765 22 12456677788999999999999888654
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.52 E-value=5.7e-06 Score=71.12 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=119.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+..++..|.++||..|..++..|.++.. .+.++.+...+++....|-..|+.+++.+..
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 105 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------- 105 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 34566777888899999888887766521 2456777888999999999999998887631
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
+..++.|+..+.+.+..|+..|..+|..+ .....++.|...+++.++.||..++..|..+ | .+.
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~--------~~~ 169 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G--------GER 169 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C--------SHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------chh
Confidence 12455666666788899999999999876 3456888889999999999999999988765 2 245
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.++.+..++.|.++++|..|..++..+.
T Consensus 170 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 170 VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 6777888889999999999999987554
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.49 E-value=6.2e-06 Score=78.51 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=144.7
Q ss_pred HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCc--chHHHHHHHHHHHHHHHHhhhh
Q 020587 83 SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNP--RSAVCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 83 ~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksL--RS~Vsk~A~~tl~dLf~~L~~~ 157 (324)
.+..++..+.+. ||..+..|+..++.++... ++.+...+..++..+...+++. ...|-+.|+.+++.+...++..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777 9999999999999998755 6666677788888899999988 6788889999999887666655
Q ss_pred HHhh--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------h-hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 158 MIDL--LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------I-LLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 158 m~~~--~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~-~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
++.+ .+.+++.|.....+...-++..+-.+|..++..... . .+++.+...+++.++.||..+..++..+++
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 5432 234566666556666788999999999999876543 2 677777778889999999999999888876
Q ss_pred cc-------------------cccchhhccHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHhhh
Q 020587 229 RL-------------------GVEGIKEYGIDKLIQVAASQLSD-------QLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 229 ~~-------------------g~~~i~~~~~~~ll~~l~~~L~D-------~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.. ....+.......+++.+.+.+.+ .++.+|..|-.++..|...+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 52 00011111247788888777753 4578999999999988888773
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.49 E-value=3.3e-06 Score=83.58 Aligned_cols=189 Identities=15% Similarity=0.097 Sum_probs=139.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..++..|.+.+|..+..|+..|..|+..+++.....+ ..+++.++..+.+....|.+.|+.+++.|...-...+...+
T Consensus 301 v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 380 (530)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45667778889999999999999999877665443333 35788899999999999999999999999864433333333
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
+ .+++.|+..+.+...-++..|..+|..++...++ ..+++.|...+.+.++.||..++..|..++....
T Consensus 381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 2 4566666666666778999999999999887654 2367788888899999999999999998887532
Q ss_pred cc------chhhc----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 232 VE------GIKEY----GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 232 ~~------~i~~~----~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.. .+..+ .-...++.+..++++.++++|+.|..++. .+|..
T Consensus 461 ~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~---~~~~~ 511 (530)
T 1wa5_B 461 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE---TYFGE 511 (530)
T ss_dssp HHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH---HHSSS
T ss_pred hhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCc
Confidence 21 01111 11123566778899999999998887775 55543
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.1e-06 Score=77.22 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=130.5
Q ss_pred HHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcH-HHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587 82 TSVKTLVAGL-DSKDWVVVCEALNNVRRLSIFHK-EAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM 158 (324)
Q Consensus 82 ~~L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~-~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m 158 (324)
..+..+...| ++.+-..+..|++.|..|+..-. ..+. +....+++.++..+++-+..|...|..++..++..+.. .
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~ 138 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-L 138 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-T
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-c
Confidence 4466666667 57788888999999999986544 3455 67778899999999999999999999999999998765 3
Q ss_pred Hhh--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC----------hhhhHHHHhhhccCCCHHHHHHHHHHHHhh
Q 020587 159 IDL--LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS----------PILLLPKLQPYLKNRNPRIRAKASMCFSRS 226 (324)
Q Consensus 159 ~~~--~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs----------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~ 226 (324)
..+ ++.+++.|+.-+...|..+++.+-.+|...+.... +..++|.|..++.+.++.||..+..++..+
T Consensus 139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344 89999999988888899999999999999998876 256888899999999999999999999999
Q ss_pred cccccccchhhc
Q 020587 227 VPRLGVEGIKEY 238 (324)
Q Consensus 227 v~~~g~~~i~~~ 238 (324)
...+|.+.+..+
T Consensus 219 ~~~vG~~~~~p~ 230 (249)
T 2qk1_A 219 IKIFGMNTFVKT 230 (249)
T ss_dssp HHHHCSGGGHHH
T ss_pred HHHhCHHHHHHH
Confidence 999998765544
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.43 E-value=4.1e-06 Score=82.61 Aligned_cols=193 Identities=18% Similarity=0.118 Sum_probs=145.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+.||..+..++..|..|+.+.++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus 245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4667777888999999999999999998776655433332 578889999999999999999999999987443333333
Q ss_pred H-HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 162 L-DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 162 ~-d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
+ ..+++.|+..+.+. +.-++..|..+|..++..... ..+++.|...+.+.++.+|..++..|.++......
T Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 2 23567777777676 889999999999988864322 24567788888888999999999999998875333
Q ss_pred cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+......-..+++.+..++.+.++++|..+-.++..|....+.
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3222111234677888899999999999999998888766654
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.34 E-value=1.4e-05 Score=72.14 Aligned_cols=127 Identities=10% Similarity=0.024 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+..++..|.++||..|..|+..|..+. .+ +.++.+...+++....|-..|+.+++.+... ...+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-----~~~~ 88 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG--GQ--------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCE 88 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----TTTH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----cccc
Confidence 3567888899999999999998888764 22 2334445555566666666666555544210 1112
Q ss_pred HHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcC--hhhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587 163 DPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVS--PILLLPKLQPYLKNRNPRIRAKASMCFS 224 (324)
Q Consensus 163 d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~~L~ 224 (324)
+.+++.|... ..+.+..|+..+-.+|..+....+ ...+++.|...+++.++.||..++..|.
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2233333321 234445555555555555543221 2334555555555555555555555544
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.30 E-value=2.3e-05 Score=73.57 Aligned_cols=191 Identities=13% Similarity=-0.013 Sum_probs=137.1
Q ss_pred CHHHHHHHHHhhcCCC------------CHHHHHHHHHHHHHHHhHcH--HHHHHhhhhHHHHHHH-HccCcchHHHHHH
Q 020587 79 DIDTSVKTLVAGLDSK------------DWVVVCEALNNVRRLSIFHK--EAMLDILGDVIPLVVK-SLKNPRSAVCKTA 143 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~------------dW~~r~eaL~~LRrLa~~h~--~~l~~~L~~iv~~l~~-~vksLRS~Vsk~A 143 (324)
|+-..|+.++.-|.+. +=+.++.||..|..++.... ..+ ..++ .++.++. .+++....|-..|
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~~G-~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQLS-GMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HHTT-HHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HHcC-CHHHHHHHHHcCCCHHHHHHH
Confidence 4456788888888763 23579999999999976322 112 1223 4567778 8999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhHH-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHH
Q 020587 144 IMTAADIFSAYNDRMIDLLD-PLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPR 214 (324)
Q Consensus 144 ~~tl~dLf~~L~~~m~~~~d-~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~ 214 (324)
+.+++.++..-...-+..++ ..++.|+..+. +.+.-+++.|-.||..++.+-.+. ..++.|...+++.++.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999998642221111222 46677776665 446788999999999998765442 2566788888999999
Q ss_pred HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
+|..++..|..+... +.+......-..+++.+..+|...++++|+.|-.++..|...
T Consensus 183 v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999998875 333222222334667778889999999999999999877655
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.30 E-value=1.9e-05 Score=77.86 Aligned_cols=185 Identities=16% Similarity=0.061 Sum_probs=136.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCc-chHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNP-RSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksL-RS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+..++..|.+.+|..+..|+..|..|+...+......+ ..+++.++..+++. ...|.++||.+++.|...-.......
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677778889999999999999999886665544333 45778888888888 89999999999999986433333332
Q ss_pred HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
++ .+++.|+..+.+...-++..|-.+|..++.+.++. .+++.|...+.+.++.++..++..|..++.....
T Consensus 368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 45677776666667789999999999998885543 3667788888999999999999999999875322
Q ss_pred c---------chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 233 E---------GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 233 ~---------~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
. .... ..-...++.+..+..+.++++++.|..++..
T Consensus 448 ~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 448 DKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 493 (528)
T ss_dssp HHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 0111 0111224556677899999999999888753
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.15 E-value=9.2e-05 Score=66.76 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=117.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHH-HHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVV-KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~-~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+++|..|..|+..|.++... +. .+..++..+. ...++....|-..|+.+++.+..... .+
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~ 125 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IY 125 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cc
Confidence 456677778889999888888877766421 11 1222333333 23567778888999998888765432 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
.+.+++.|+....+.+..||..|-.+|..+- ....++.|...+++.++.||..++..|..+ +.. .+
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~------~~ 191 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININ----KYD------NS 191 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TCC------CH
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh----ccC------cH
Confidence 4567788888888889999999998887643 355888888889999999999999888654 211 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
..++.+..++.|.++++|..|-.++..
T Consensus 192 ~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 192 DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 567788889999999999998888754
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.14 E-value=9.2e-05 Score=63.50 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=114.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+..++..|.+.++..+..|+..|..|+..+++.....+ ...++.++..+++....|.+.|+.+++.|...-.......
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356677888899999999999999999876665443333 3478889999999999999999999999986433332222
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
+ ...++.|+..+.+.+.-+++.|-.+|..++.+.... ..++.|...+.+.++.+|..++..|..+..
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 2 247888888888778899999999999998764332 356778888899999999999999887653
No 39
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.09 E-value=1.6e-05 Score=85.67 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=128.0
Q ss_pred hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh--hhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-
Q 020587 123 DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN--DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL- 199 (324)
Q Consensus 123 ~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~--~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~- 199 (324)
.++..+.+.+++=.+. -.||..++.|++..+ ..++||+-.+++.+|...+|....|+++|..|+++++..++|..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 5677788888888888 899999999997775 58899999999999999999999999999999999999999844
Q ss_pred --hHHHHhhhccCC-CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 200 --LLPKLQPYLKNR-NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 200 --ll~~L~~~~~hK-Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
++|.|..++++. -.+.+..+..++..+++.. +. .....+..+++.+..++.|--+||..+|++++..+-...+
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 788898998765 4899999999999999865 33 3344599999999999999999999999999986665543
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.08 E-value=8.6e-05 Score=75.20 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=125.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
..+.++-+.|++.|=.++.+++..+-.+-.... ........+++.+.+....+-|.+...+..++..- ...
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~ 83 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDM 83 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chH
Confidence 356778888888887788888887766533221 23444556777889999888888888887775531 122
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID 241 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~ 241 (324)
+-.+++.|.+-..+.+.++|..|-++|..+...--...+++.|...+.|.||.||.+++.++.++... +++.+. -.
T Consensus 84 ~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~ 159 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQ 159 (591)
T ss_dssp HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cc
Confidence 34455666677888899999877555544321111133666688999999999999999999999884 344222 24
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 242 KLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.+++.+..+|+|.++.||..|-.++..+.
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 68899999999999999999987776543
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.07 E-value=6.7e-05 Score=76.00 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=122.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh-HHhhHHH
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR-MIDLLDP 164 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~-m~~~~d~ 164 (324)
.+...|.+.++.-|..|...+.++...+|+.+.. ..++..+...+.|....|..+|+.+++++...-... ..+....
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 3556667777877877887777777666654421 356677778888888888888888888876543211 1223345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc--cccchhh
Q 020587 165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL--GVEGIKE 237 (324)
Q Consensus 165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~--g~~~i~~ 237 (324)
.+..|+....+.+.|.+-.. |+.+...++. ..+++.|...++|.|+.|+..++.++..+...+ +++.+.
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~i---l~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~- 278 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFI---LDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN- 278 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHH---HHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH-
T ss_pred HHHHHHHcCCCCCchHHHHH---HHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH-
Confidence 56666666666667765533 3333333332 357888889999999999999999999887654 222222
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 238 YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 238 ~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.-.+++.+.+..+ .+.++++|+.|-+.+..+...+++
T Consensus 279 ~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 279 MLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp HHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChH
Confidence 1134555555544 468999999999999988877654
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.03 E-value=0.00016 Score=72.02 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=140.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
...+..+...|.+.+-+.+.+++..|..++.++.+..... -..+++.++..+.+....|...|+.+++.|+..-.....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 3456677777888888889999999999988766544322 235778888999999999999999999998643221111
Q ss_pred hhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 160 DLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 160 ~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
..+ ...++.|+......+.-|+..|..+|.-++.+... ..++|.|...+++.+..+|..++..|.++...-.
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 111 12456666667777888999999999988765332 2367778888899999999999999988876432
Q ss_pred ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.+.+....-..+++.+..+|...+++++..+-.++..+....++.
T Consensus 410 ~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 454 (529)
T 3tpo_A 410 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 222211111224666778899999999999988888776665543
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.01 E-value=6.5e-05 Score=74.64 Aligned_cols=195 Identities=17% Similarity=0.118 Sum_probs=139.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
...+..+...|.+.+.+.+..++..|+.|+.+..+..... -..+++.++..+.+....|...|+.+++.|+..-.....
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~ 310 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence 3456677778889999999999999999988766544322 234778888999999999999999999988654322211
Q ss_pred hhHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 160 DLLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 160 ~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
..++ ..++.|+....+.+.-++..|..+|..++.+... ..+++.|...+++.+..+|..++..|.++...-.
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence 1121 2455555666677888999999999887654332 2367778888899999999999999998876432
Q ss_pred ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.+.+....-...++.+..+|...+++++..+-.++..+.+..++
T Consensus 391 ~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 434 (510)
T 3ul1_B 391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 32221111223466777889999999999998888777666554
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.96 E-value=0.00041 Score=68.97 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=133.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
..++..|.+.++..+..++..|..|+.+.++.....+ ..+++.+...+++....+.++||.+++.|+..-.......++
T Consensus 296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~ 375 (529)
T 3tpo_A 296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 375 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 4566777889999999999999999876554332222 345677888899999999999999999998754444333333
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------hHHHHhhhccCCCHHHHHHHHHHHHhhcccc---c
Q 020587 164 -PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRL---G 231 (324)
Q Consensus 164 -~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~---g 231 (324)
.+++.|+....+...-++.+|..||..++.+.++.. +++.|...+.++++.++..+...|.++++.. +
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~ 455 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 455 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence 477888877777778899999999998888776643 4667788889999999999999998887632 1
Q ss_pred cc-chhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 232 VE-GIKEY-GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 232 ~~-~i~~~-~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
.. .+... .---.++.+-.+....+.++++.|.+++. ..|+.
T Consensus 456 ~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie---~yf~~ 498 (529)
T 3tpo_A 456 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE---KYFSV 498 (529)
T ss_dssp CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH---HHC--
T ss_pred ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCC
Confidence 11 11000 00011334556778999999998887774 55653
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.95 E-value=0.00073 Score=63.21 Aligned_cols=188 Identities=14% Similarity=0.170 Sum_probs=130.3
Q ss_pred HHHHHh-hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 84 VKTLVA-GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 84 L~~~l~-~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
+..++. .|.+.+=.-+..|+..|..++..+|..-...+. ..++.++..++ +....|-++|+-+++-|..........
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 456777 788888888889999999998877653322222 45666777776 457899999999999998776655544
Q ss_pred hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587 161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV 232 (324)
Q Consensus 161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~ 232 (324)
+.+ ..++.|+..+.+...-++..|..+|..++..-.. .-+++.|...+.+.++.||..++..|..++.. +.
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~ 241 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD-FP 241 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-CH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC-Ch
Confidence 443 4677777776666788899999999998876221 23666788888999999999999999999875 22
Q ss_pred cchhh-----ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhh
Q 020587 233 EGIKE-----YGIDKLIQVAASQLS--DQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 233 ~~i~~-----~~~~~ll~~l~~~L~--D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
..... ..+..+++.....+. +.+.|.++++.+++ ...|.+
T Consensus 242 ~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il---~~~f~~ 288 (296)
T 1xqr_A 242 QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL---QTCFSS 288 (296)
T ss_dssp HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH---HHHCC-
T ss_pred hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---HHHcCC
Confidence 21211 124455544455555 34566666665555 566754
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.81 E-value=0.0018 Score=62.76 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=119.3
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 83 SVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 83 ~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
.+..++..|. +.||..+..++..|+.|+.. ++..... -...++.++..+++....+...|+.++..|+..-......
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455566665 45999999999999999764 3322111 1257888899999988999999999999998764322221
Q ss_pred hH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----------------------cC--------------------
Q 020587 161 LL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----------------------VS-------------------- 196 (324)
Q Consensus 161 ~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----------------------vs-------------------- 196 (324)
.. ...++.|+..+.+.+.-++..+..+|..+... .+
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 218 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc
Confidence 11 23556666655554444444444344322211 00
Q ss_pred ------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 197 ------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 197 ------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
....++.|...+++.++.+|..++..|..+....... .....+++.+.+++.+.++++|..|-.++..|.
T Consensus 219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0124555666777778888888888887776543211 124578889999999999999999887777653
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.76 E-value=0.00077 Score=66.86 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=133.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..++..|.+.++..+..++..|..|+.+.+......+ ..+++.+...+++.+..+-+.||.+++.|+..-.......+
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 34566778889999999999999999776554332222 23556677888999999999999999999765443333333
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------hHHHHhhhccCCCHHHHHHHHHHHHhhcccc---
Q 020587 163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRL--- 230 (324)
Q Consensus 163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~--- 230 (324)
+ .+++.|+....+...-++.+|..||..++.+.++.. +++.|...++++++.++..+...|.++++..
T Consensus 356 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 2 477888888877788899999999998888776643 4567788889999999999999998888642
Q ss_pred cccc-hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 231 GVEG-IKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 231 g~~~-i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+... +.. +.-.-.++.+-.+....+.++++.|..++ .+.|+.
T Consensus 436 ~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii---e~yf~~ 479 (510)
T 3ul1_B 436 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI---EKYFSV 479 (510)
T ss_dssp TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH---HHHCC-
T ss_pred cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH---HHHCCC
Confidence 2111 100 00011234556677889999999888776 466654
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.62 E-value=0.0035 Score=65.72 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=117.7
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 84 VKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+..++..|. ++|+..+..|+..|+.|+.. ++..... -..+++.++..+++....|.+.|+.++..|+..........
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 344445554 34899999999999998764 2221111 12578889999999999999999999999988754333222
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-------------------------------------------hcCh
Q 020587 162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTT-------------------------------------------WVSP 197 (324)
Q Consensus 162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~-------------------------------------------~vs~ 197 (324)
. ..+++.|+..+.+.+.-+++.+..+|..+.. +-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 2 2355555555554444444444334332221 1000
Q ss_pred ------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 198 ------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 198 ------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
...++.|...+++.++.++..++..|..+...... ..+...+++.+..++.+.++++|..|-.++..|.
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11345666777777888888888887777654322 1134678889999999999999999888877653
No 49
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.59 E-value=0.0056 Score=56.08 Aligned_cols=180 Identities=9% Similarity=0.002 Sum_probs=146.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
..+..+++.|.++|=..+..+|..|..+.+.-|+.+. ..+.++.+.++...++-.=.|+-.|+.|+..|.....-+ ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence 3677888888999999999999999999988766654 467888888999999999999999999999987764322 23
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~ 239 (324)
.++.+..+|..-....+..++++|...|..+ .-.++ .+++..|.+-+++||++++.....++..+..+-+...+.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--- 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--- 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG---
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH---
Confidence 4666777777777788999999999999998 44554 447778888889999999999999999998887766554
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 240 IDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
+.++.-+..+|+--+|++++.|--++.
T Consensus 188 -~~I~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 188 -TLILDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp -GGTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 457777888888889999998876653
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.57 E-value=0.0063 Score=61.71 Aligned_cols=185 Identities=16% Similarity=0.128 Sum_probs=119.0
Q ss_pred HHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587 82 TSVKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI 159 (324)
Q Consensus 82 ~~L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~ 159 (324)
..+..++..|.+. +...+..|+..|+.|+.. ++..... -...++.++..+++....|...|+.++..|+........
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 3456677777654 788899999999988764 3322111 125788899999999999999999999999877432222
Q ss_pred hhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----------------------cC-------------------
Q 020587 160 DLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----------------------VS------------------- 196 (324)
Q Consensus 160 ~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----------------------vs------------------- 196 (324)
... ...++.|+..+.+.+.-++..+..+|..+... .+
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 214 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence 222 23455555444443333333333333322211 00
Q ss_pred h-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 197 P-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 197 ~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
. ...++.|...+++.++.+|..++..|..+...... ......+++.+.+++.+.++++|..|-.++..|
T Consensus 215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 11355666677777888888888888887654211 123457889999999999999999998888766
Q ss_pred HH
Q 020587 270 QS 271 (324)
Q Consensus 270 ~~ 271 (324)
..
T Consensus 291 ~~ 292 (644)
T 2z6h_A 291 TC 292 (644)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.45 E-value=0.0051 Score=59.59 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=104.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh--hhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhh--hh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL--GDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYN--DR 157 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L--~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~--~~ 157 (324)
.+..+...|.++|...+..|+..|..|+.+.+.. ...+ ...++.++..+.+ ....+.+.|+.++..|...-. ..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 4677888888999999999999999998754421 1112 2466667776653 366788999999888765421 11
Q ss_pred HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
+.. ...++.|+....+...-++..|-.+|..++..-.. ...++.|...+++.++.+|..++..|..+.
T Consensus 97 i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 97 IFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111 24788888888887888999999999999877432 346778888899999999998877776544
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.39 E-value=0.00047 Score=70.31 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=115.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh-H
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL-L 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~-~ 162 (324)
+.++-..+++.|=..+++++..|-.+-.... ........+++.+.+.+-.+=|.+-..+..++.. +++ +
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~-----d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~ 105 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGY-----PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-----RQDVH 105 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTC-----CCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-----CHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCC-----CCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-----CcHHH
Confidence 4455556666554557777665555432211 1233445566777777777777666654444322 344 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK 242 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ 242 (324)
-.++..|.+-..+.|.++|..|-++|..|...--...+++.|..+++|.||.||.+++.++.++.... ++ + .+.
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~-~----v~~ 179 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PE-L----MEM 179 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GG-G----GGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hH-H----HHH
Confidence 45666777778889999999888888776532112335778889999999999999999999998853 32 2 235
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 243 LIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
+++.+..+|+|.++.|+.+|-.++..+.
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 6777888999999999999877776553
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.32 E-value=0.0078 Score=61.02 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=107.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCc-chHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNP-RSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksL-RS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
.+..++..|.++|+..+..|+..|..|+.+.+....- ....++..++..+.+- ...+.+.|+.++..|...-.....-
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 3667778888999999999999999999866432211 1235677778877754 6778889998888776542211111
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
.-...++.|+..+.+....++..|-.+|..++..-.. ...++.|...+++.+++++..++.+|..+..
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 1124788888888888889999999999999877532 2367788899999999999999888877664
No 54
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.31 E-value=0.0026 Score=61.22 Aligned_cols=182 Identities=9% Similarity=0.048 Sum_probs=126.5
Q ss_pred CCCCCHHH--HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHc---HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHH
Q 020587 75 IDVEDIDT--SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFH---KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTA 147 (324)
Q Consensus 75 ~pl~dpe~--~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h---~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl 147 (324)
.|+.+++. .+++. ...++. |=.+..+++..+=.+-... |+.. ...+-..+++.+.+-+-.+=|-.-..+
T Consensus 17 ~p~~~~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e---~t~lf~~v~kl~~s~d~~lKrLvYLyl 92 (355)
T 3tjz_B 17 NPFQHLEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTE---ATEAFFAMTKLFQSNDPTLRRMCYLTI 92 (355)
T ss_dssp ---CCCCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHHGGGGCCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhH---HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45644443 66663 445433 5555556777666654322 1111 223445678899999988888777766
Q ss_pred HHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587 148 ADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 148 ~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v 227 (324)
..+... .+++=.++..|.+=+.+.|.++|--|-++|..+...---..+.+.+..++.|+||-||.+++.+..+++
T Consensus 93 ~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~ 167 (355)
T 3tjz_B 93 KEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLL 167 (355)
T ss_dssp HHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 655544 233336777777778999999999988888877655555667778889999999999999999999888
Q ss_pred ccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 228 PRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 228 ~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
... ++ + .+.+++.+..++.|.+|-|-.+|-.++..+.+
T Consensus 168 ~~~-pe-~----v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 168 KCS-FD-V----VKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp TTC-HH-H----HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred ccC-HH-H----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 753 22 2 34578888889999999999988887776654
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.22 E-value=0.0061 Score=63.83 Aligned_cols=180 Identities=11% Similarity=0.024 Sum_probs=118.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-hhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-DLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~~~ 162 (324)
+..++..|.+.+...+..++..++.+. ...+. ...++.++..+++-...|-..|+.+++.|...-..... ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i~---~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAELA---TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHHH---hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 467888888888888888888877552 12221 44566666777777889999999999999875432211 113
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcC------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587 163 DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVS------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 163 d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
..+++.|+..+... +..++..|..+|..+...-. ....++.|...+++.++.+|..++..|..+....... .
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-K 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-H
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-H
Confidence 46778877776533 67889999999988654321 1246778888899999999999999999988753221 1
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
........++.+..++.+.++++|..+-.++..|.
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 10111346777888888999999998877776554
No 56
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.20 E-value=0.0072 Score=64.07 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=132.7
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+..++..|.++ +=..+++|+.-|+.|+.+.++.-...+. ..++.+...+.+-...|-+.|+.+++.|+..- .....+
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~ 660 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMF 660 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHH
Confidence 45566666654 3345678999999998765443322222 35677777777888889999999999998632 223334
Q ss_pred HH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC-------h-hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 162 LD--PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS-------P-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 162 ~d--~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs-------~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
++ ..++.|+..+...+.-++.+|..||..+..... . ...++.|...+.+.+..+|..++..|.+++.. +
T Consensus 661 v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s 739 (810)
T 3now_A 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-G 739 (810)
T ss_dssp HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-C
T ss_pred HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-C
Confidence 42 478888888888888899999999988876311 1 34667788889999999999999999998872 2
Q ss_pred ccchhhccHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhh
Q 020587 232 VEGIKEYGIDKLIQVAASQLSDQ---LPESREAARTLLLELQSVYE 274 (324)
Q Consensus 232 ~~~i~~~~~~~ll~~l~~~L~D~---~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+......-.-.++.+..++.+. ++++++.|.+++..+.....
T Consensus 740 ~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 740 EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 22111111223566677777554 89999999999987775543
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.01 E-value=0.03 Score=53.46 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=124.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHh-hhhHHHHHHHH-ccCcchHHHHHHHHHHHHHHHHh---hhh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDI-LGDVIPLVVKS-LKNPRSAVCKTAIMTAADIFSAY---NDR 157 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~-L~~iv~~l~~~-vksLRS~Vsk~A~~tl~dLf~~L---~~~ 157 (324)
+..++..|++.+=+.+..|...|+.|+.. .++.-... -...++.++.. .++....+.+.|+.++..|.... +..
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence 56677778888888888899999999764 23211111 12355666665 45566788889999998887632 222
Q ss_pred HHhhHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHhh--cCh-h-------hhHHHHhhhccCCCHHHHHHHHHHH
Q 020587 158 MIDLLDPLLVQLLLKSSQDKR----FVCEAAEKALVAMTTW--VSP-I-------LLLPKLQPYLKNRNPRIRAKASMCF 223 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~sk~----FI~e~A~~AL~amv~~--vs~-~-------~ll~~L~~~~~hKNp~VR~~aa~~L 223 (324)
+.. ....++.|.......+. -+.+.|..+|..+..+ .++ . -.++.|...+++.+..++..++..|
T Consensus 209 i~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 209 ICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 211 23467777766654322 4778888888887763 122 1 2567778888899999999999999
Q ss_pred HhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 224 SRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 224 ~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
.++...- .+........-.++.+..++..+++++|+.|-.++..|...
T Consensus 288 ~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 288 WNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9987531 11111111234577888899999999999999888877654
No 58
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.055 Score=48.16 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=119.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh--hhHH
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN--DRMI 159 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~--~~m~ 159 (324)
..+++++..|++.-|..+-.||.-+..++...|+...+.+.+++.-+-+. +|+-.-+++.+.+| -...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks----------EaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHhHHHHhC
Confidence 45788889999999999999999999999888998888888776655553 46666678888877 3334
Q ss_pred hh-HHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587 160 DL-LDPLLVQLLLK--SSQDKRFVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234 (324)
Q Consensus 160 ~~-~d~ll~~LL~K--a~~sk~FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~ 234 (324)
|+ ++.++|.|+.- +|+. -++---.-+|..|...-+. .-+...|..-+.+||-.=|..+.-|+.. +|..+
T Consensus 102 Pe~v~~vVp~lfanyrigd~--kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a----lGen~ 175 (253)
T 2db0_A 102 PELVKSMIPVLFANYRIGDE--KTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEA----MGENS 175 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT----CCTTT
T ss_pred HHHHHhhHHHHHHHHhcCCc--cceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----HhccC
Confidence 44 68889998865 4543 3444555667766554322 2244457777789997777666666543 44443
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ 270 (324)
Q Consensus 235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~ 270 (324)
.. + ..-+++-+..+|.|.+.-||..|-.++..+-
T Consensus 176 ~~-y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 176 FK-Y-VNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp HH-H-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cc-c-cCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 22 2 3445666778999999999999988887554
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.87 E-value=0.011 Score=60.55 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~ 174 (324)
|=.++.+++..+=.+-. +..........+++.+.+.+-.+=|.+-..+..++..- .+.+-.++..+.+-..
T Consensus 51 ~~~~k~~~l~Kli~l~~-----~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-----LGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-----HSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-----cCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence 44455566655443322 11123344566788888888888777776666665321 1224455666666688
Q ss_pred CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc--cCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc
Q 020587 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL--KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS 252 (324)
Q Consensus 175 ~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~ 252 (324)
+.|.+++..|-++|..+...--...+++.+..++ .|.+|.||.+++.++.++.+. .++.+.. +.+.+.+.++|+
T Consensus 122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~ 197 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLN 197 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhC
Confidence 8899999888777776633221233566777888 899999999999999999984 4443321 256777788999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 020587 253 DQLPESREAARTLLLELQS 271 (324)
Q Consensus 253 D~~pEvR~~AR~~l~~L~~ 271 (324)
|.+|.|+.+|-.++..+..
T Consensus 198 d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 198 DQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 9999999999888776544
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.84 E-value=0.03 Score=59.30 Aligned_cols=187 Identities=16% Similarity=0.059 Sum_probs=131.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH---
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI--- 159 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~--- 159 (324)
+..+...|++.+=..+.+|...|..|+. +++.-...+ ...++.++..+++--..+-++|+.+++.|...-.+...
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 4566677788887889999999999985 444222212 34677888888887778889999999999876543321
Q ss_pred hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
......+++|+.....+ +.....+|-.||..+..+-.. ...++.|...+.|.|+.||+.++.+|.+++..
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-- 653 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-- 653 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence 12234788888877643 445556777777766654211 12566778888899999999999999998873
Q ss_pred ccchhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 232 VEGIKEYG-IDKLIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 232 ~~~i~~~~-~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
.+....+. -...++.+.+++...+.++|..|=.++..|....
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 33222221 0236778888999999999999999998887643
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.80 E-value=0.05 Score=57.81 Aligned_cols=173 Identities=11% Similarity=0.064 Sum_probs=105.8
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc---CcchHHHHHHHHHHHHHHHHhh
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK---NPRSAVCKTAIMTAADIFSAYN 155 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk---sLRS~Vsk~A~~tl~dLf~~L~ 155 (324)
||+.-+..-++ ++..|..|.-|.+.|..|+.+.++.+.+.+-..+...+.... +..=..-..|+.+++-++....
T Consensus 360 dp~e~i~~d~e--~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 360 DPIEYIRRDLE--GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp CHHHHHHHHHH--C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred CHHHHHHhccC--cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 56554443333 345678899999999999988776554433333333332111 1222344567888888865421
Q ss_pred -------h-----hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHH
Q 020587 156 -------D-----RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKAS 220 (324)
Q Consensus 156 -------~-----~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa 220 (324)
. .+.+++...+.+.|.--.....+||..|-.++..+....++.. +++.|..++.+.++.||..++
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 1 4445443322222221111288999999999999998886543 555677888889999999999
Q ss_pred HHHHhhccccc----------ccchhhccHHHHHHHHHHhccCC
Q 020587 221 MCFSRSVPRLG----------VEGIKEYGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 221 ~~L~~~v~~~g----------~~~i~~~~~~~ll~~l~~~L~D~ 254 (324)
..|..+++... ...+..+ .+.+++.+..+++..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKH 560 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhc
Confidence 99999887532 1223333 677777777777664
No 62
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.79 E-value=0.074 Score=52.62 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=122.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHh-hhhHHHHHHHH-ccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDI-LGDVIPLVVKS-LKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~-L~~iv~~l~~~-vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
+..++..|.+.+=+.+..|...|+.|+.. .++.-... -...++.++.. +++....+.+.|+.++..|.......-..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 55666677777777778888888888763 22211111 12356667775 45566788999999999998743211111
Q ss_pred hH--HHHHHHHHHHhcCChH----HHHHHHHHHHHHHHhh--cCh--------hhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587 161 LL--DPLLVQLLLKSSQDKR----FVCEAAEKALVAMTTW--VSP--------ILLLPKLQPYLKNRNPRIRAKASMCFS 224 (324)
Q Consensus 161 ~~--d~ll~~LL~Ka~~sk~----FI~e~A~~AL~amv~~--vs~--------~~ll~~L~~~~~hKNp~VR~~aa~~L~ 224 (324)
.. ...++.|.......+. -+.+.|..+|..+..+ .++ .-.++.|...+++.+..++..++..|.
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11 3467777766654322 4788888898887763 222 124667778888999999999999999
Q ss_pred hhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587 225 RSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS 271 (324)
Q Consensus 225 ~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~ 271 (324)
++... ..+......-.-.++.+..++..+++++|+.|-.++..|..
T Consensus 405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 88743 12211111233467788889999999999999888876543
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.62 E-value=0.18 Score=46.22 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=130.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
+..+..++..+.++|=.-.+.|+.-+++|....|- =...+..++.++...+++.+--+.-.|.-.++-| ....
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL-~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~ 146 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPM-GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLE 146 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSC
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------Cccc
Confidence 34566777778888888899999999998775420 1134666777788888888877776666444444 2222
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh----hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchh
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIK 236 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~ 236 (324)
....++..++.-....+.-+..+|-++|..|..+..... ++.-+...++|.+|.++..+...+..++.+-=.+.+.
T Consensus 147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~ 226 (265)
T 3b2a_A 147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVK 226 (265)
T ss_dssp CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCH
T ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHH
Confidence 233344444444466689999999999999988876443 4455778889999999999999999888863222222
Q ss_pred hccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHH
Q 020587 237 EYGIDKLIQVAASQL-SDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 237 ~~~~~~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~ 272 (324)
. ++.++...+..+. --+.|+.|.-||...-.+...
T Consensus 227 ~-~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 227 I-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp H-HHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 1 4777888888888 899999999999987666543
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.57 E-value=0.006 Score=49.02 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=78.0
Q ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHh
Q 020587 126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQ 205 (324)
Q Consensus 126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~ 205 (324)
..+...+++....|-..|+.+++.+ +. +. ++.|+..+.+.+..||..|-.+|..+ .....++.|.
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~----~~---~~----~~~L~~~L~d~~~~vR~~A~~aL~~~----~~~~a~~~L~ 79 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRM----GD---EA----FEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPLI 79 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSC----SS---TT----HHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh----Cc---hH----HHHHHHHHcCCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 3344555555555555555444433 11 11 36666777788899999988887664 3456788888
Q ss_pred hhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 206 PYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 206 ~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
..+++.++.||..++..|..+- . +..++.+..++.|.++.+|..|..++.
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~----~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIG----G--------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHC----S--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHHHHHhC----c--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8889999999999998887542 1 345677778889999999999988764
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.57 E-value=0.015 Score=56.79 Aligned_cols=182 Identities=14% Similarity=0.061 Sum_probs=116.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+..++..|++.|+..++.|...|+.|+.+++..- .-.-...++.++..+++....+.+.|+.++..|... .+.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 5577888889999999999999999987654211 111345688899999999999999999999999863 11111111
Q ss_pred --HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhh------hHHHHhhhc--------cC--------CCHHHHH
Q 020587 163 --DPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPIL------LLPKLQPYL--------KN--------RNPRIRA 217 (324)
Q Consensus 163 --d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~------ll~~L~~~~--------~h--------KNp~VR~ 217 (324)
...++.|+.... ..+.-+++.|..||..+..+ ...+ .+|.|...+ ++ ..+.+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 134677777766 55678899999999888876 3222 344444444 11 3456777
Q ss_pred HHHHHHHhhccccccc---chhh--ccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Q 020587 218 KASMCFSRSVPRLGVE---GIKE--YGIDKLIQVAASQLSD--QLPESREAARTLLLEL 269 (324)
Q Consensus 218 ~aa~~L~~~v~~~g~~---~i~~--~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L 269 (324)
.++..|.++... ++ .+.. ..++.|++.+.....+ .+..+.+.+-.+++.|
T Consensus 162 ~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 162 NATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 888888888764 22 1222 2355565555544322 3445566665555444
No 66
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.48 E-value=0.071 Score=54.13 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=71.5
Q ss_pred HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc
Q 020587 129 VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL 208 (324)
Q Consensus 129 ~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~ 208 (324)
...+.+-...|-..|+.+++.+...-...+.++.+ .++....+....|+..|-..|..|+...+-..++..|..++
T Consensus 319 ~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l 394 (618)
T 1w63_A 319 GRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFL 394 (618)
T ss_dssp HHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 33344444555555666666665554444444444 34444567788899999999999888877788899999999
Q ss_pred cCCCHHHHHHHHHHHHhhccccc
Q 020587 209 KNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 209 ~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
.+.+..+|..+...+..|..+..
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSC
T ss_pred HhCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 67
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.09 Score=47.52 Aligned_cols=138 Identities=11% Similarity=0.106 Sum_probs=95.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHc------HHHHHHhhhhHHHHHH-HHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFH------KEAMLDILGDVIPLVV-KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h------~~~l~~~L~~iv~~l~-~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
+.+.+=.-...||+.+..++... ..........+++.++ +.+.+.|..+...|+.++.+++.... ..+
T Consensus 64 l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~ 138 (278)
T 4ffb_C 64 ITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SIT 138 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSH
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHH
Confidence 34566667778888888887632 2333344566666665 56899999999999998888875433 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----cChhhhH----HHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----VSPILLL----PKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----vs~~~ll----~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
.++..++.-....|.-++.++-..|..++.. +++...+ +.|...+.|.|+.||..+..++..+...+|..
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4455555556777888888888888887765 2334333 35667789999999999999999988888864
No 68
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.26 E-value=0.062 Score=56.56 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587 92 DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171 (324)
Q Consensus 92 ~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~ 171 (324)
++.+|..+.-++-.+..++..-.+...+.+..++..+ ..+.+....|-..+|.+++.+...++... .+++.+++.|+.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~ 536 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLH 536 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 5679999999999898887643221122344444422 23343456688999999999998887543 677888888887
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccC--CCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 172 KSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKN--RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 172 Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~h--KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
...+ .-|+..|..|+..+++.+... .++..|...+.+ -+...|..+...+..++...+.+....+ .+.+
T Consensus 537 ~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~-~~~l 613 (963)
T 2x19_B 537 ALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN-LHSL 613 (963)
T ss_dssp HTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH-HHHH
T ss_pred HhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-HHHH
Confidence 7765 568899999999999876431 133333343432 3568888888888888877652323333 3444
Q ss_pred HHHHHHh----c-cCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 244 IQVAASQ----L-SDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 244 l~~l~~~----L-~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
++.+... + ++.+++.|......+..|-.++..
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4333322 2 234788887666666555555543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.17 E-value=0.011 Score=56.81 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----
Q 020587 120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW----- 194 (324)
Q Consensus 120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~----- 194 (324)
.++.+.+.+.+.+.|-...|.|+|+.|+..|+..-.+-...+++.+ -....+.+.+|.-.|-.+|..|.++
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l----~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~ 211 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA----QEAASSDNIMVQYHALGLLYHVRKNDRLAV 211 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH----HHHTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH----HHHhcCCCccHHHHHHHHHHHHHhhchHHH
Confidence 3567778889999999999999999999988876555554444332 2223444444444333333333321
Q ss_pred ----------------------------cC------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587 195 ----------------------------VS------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI 240 (324)
Q Consensus 195 ----------------------------vs------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~ 240 (324)
+. ..++++.|.+.++|+|+.|--.++..+..+-. .+.. .+
T Consensus 212 ~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-----~~ 285 (355)
T 3tjz_B 212 SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-----EL 285 (355)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-----HH
Confidence 00 12244456666777777777777777665322 1111 12
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587 241 DKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
......+..|++.+++++|+.|-+.+..+...+++
T Consensus 286 ~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 286 APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp --CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 33455666778888899999998888877777663
No 70
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.14 E-value=0.079 Score=56.01 Aligned_cols=177 Identities=11% Similarity=0.099 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc--CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK--NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk--sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~ 171 (324)
.+|..+.-+|-.+..++..-++...+.+..++. ++..+. +....|-..||.+++.+...+.... .+++.+++.|+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence 699999999999999977544444456677766 555555 4578899999999999999988654 678888888887
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccC--CCHHHHHHHHHHHHhhcccccccchhhc---cH
Q 020587 172 KSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKN--RNPRIRAKASMCFSRSVPRLGVEGIKEY---GI 240 (324)
Q Consensus 172 Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~h--KNp~VR~~aa~~L~~~v~~~g~~~i~~~---~~ 240 (324)
.. + .-|+..|..|+..+++.+... .++..|...+.+ -....+..+...+..++...+.+....+ -+
T Consensus 554 ~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll 630 (971)
T 2x1g_F 554 GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV 630 (971)
T ss_dssp HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77 3 457899999999999877432 133333344443 2467888888888888876653333222 13
Q ss_pred HHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhh
Q 020587 241 DKLIQVAASQLSDQ--LPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 241 ~~ll~~l~~~L~D~--~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+.+++.+...+... +++.+...-..+..|-.++..
T Consensus 631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 667 (971)
T 2x1g_F 631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS 667 (971)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence 44444444444443 555666666666666655553
No 71
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.13 E-value=0.13 Score=54.31 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=111.8
Q ss_pred HHhhcCCC--CHHHHHHHHHHHHHHHhH---cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 87 LVAGLDSK--DWVVVCEALNNVRRLSIF---HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 87 ~l~~L~s~--dW~~r~eaL~~LRrLa~~---h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
++..+.++ +=.-|..++..+-+++.+ |++ .+..+++.++..+ + ..|+..||.++..|.+.++..+.||
T Consensus 509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~----~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA----YIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44445532 444577777777777653 343 3455555555555 3 4589999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcChhhhHH-----------HHhhhccCC--CHHHHHHHHHHHH--
Q 020587 162 LDPLLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSPILLLP-----------KLQPYLKNR--NPRIRAKASMCFS-- 224 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~~~ll~-----------~L~~~~~hK--Np~VR~~aa~~L~-- 224 (324)
++.++..|+.-... ...-.+..+-.|+..++..+++....+ .+...++.. ++.-+.....++.
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 99999999887765 356778888888888888765332222 122222222 3334444444443
Q ss_pred -hhccccccc------------chhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhhhc
Q 020587 225 -RSVPRLGVE------------GIKEYGIDKLIQVAASQLSD--QLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 225 -~~v~~~g~~------------~i~~~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
.++..++.. .+..+ .+.+++.+...+.+ .++++.+.+-+++..+...|+..
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 727 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727 (971)
T ss_dssp HHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence 333333221 11111 45555655555543 36789888888888877777644
No 72
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.07 E-value=0.77 Score=41.25 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCCCH--HHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh---hh
Q 020587 83 SVKTLVAGLDSKDW--VVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY---ND 156 (324)
Q Consensus 83 ~L~~~l~~L~s~dW--~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L---~~ 156 (324)
.+..++..|.+.|. +.++.|...|+.|+..+++.-... -...++.++..+++....+-..|+-++.-|...- +.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46788999999998 788899999999988765422211 2245688999999999999999999999997531 11
Q ss_pred hHHhhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhh-----HHHHh-----hhcc-----------CCCHH
Q 020587 157 RMIDLLDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILL-----LPKLQ-----PYLK-----------NRNPR 214 (324)
Q Consensus 157 ~m~~~~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~l-----l~~L~-----~~~~-----------hKNp~ 214 (324)
.+.. ...++.|+.-.. ....-+++.|..+|-.+..+-..... ++.|. ++.. ..++.
T Consensus 89 ~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1111 134566655554 23566888888888877654333221 23222 1211 24679
Q ss_pred HHHHHHHHHHhhcccc--cccchhhc-c-HHHHHHHHHHhccCCC--HHHHHHHHHHHH
Q 020587 215 IRAKASMCFSRSVPRL--GVEGIKEY-G-IDKLIQVAASQLSDQL--PESREAARTLLL 267 (324)
Q Consensus 215 VR~~aa~~L~~~v~~~--g~~~i~~~-~-~~~ll~~l~~~L~D~~--pEvR~~AR~~l~ 267 (324)
|+..++.+|..+--.- +...+... | .+.|+..+...+.++. ...++.+-.++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 9999999988876521 12224332 3 5888888887776554 344555544443
No 73
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.00 E-value=0.11 Score=56.48 Aligned_cols=139 Identities=8% Similarity=0.052 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHcc-----CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLK-----NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLV 167 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vk-----sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~ 167 (324)
.+|..+.-++--++.++..- ++...+.+..+++.++..+. +.+..|..++|-++|...+.+..+ -.+++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 58999999999999987642 44466778888887777665 355566668999999999988654 346899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 168 QLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 168 ~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
.|+..+.+++.-|++.|..|+..+++.|...- ++..+......-.+.-+..+...+..++...+..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 99999998888899999999999999876321 2223334334445666677778888888877654
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.99 E-value=0.13 Score=54.48 Aligned_cols=190 Identities=14% Similarity=0.154 Sum_probs=125.5
Q ss_pred CHHHHHH-HHHhhcCCC---CHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH
Q 020587 79 DIDTSVK-TLVAGLDSK---DWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA 153 (324)
Q Consensus 79 dpe~~L~-~~l~~L~s~---dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~ 153 (324)
+.+..+. .++..|.+. .=..|..++..+-+++.+ +++ .+..++..++..+.+..--|...||.++..++..
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~----~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA----QLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 4444432 345555544 444577888888888764 343 4666777788888887777889999999998874
Q ss_pred h-----------hhhHHhhHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHhh----cCh--hhhHHHHh----hh
Q 020587 154 Y-----------NDRMIDLLDPLLVQLLLKSSQD-----KRFVCEAAEKALVAMTTW----VSP--ILLLPKLQ----PY 207 (324)
Q Consensus 154 L-----------~~~m~~~~d~ll~~LL~Ka~~s-----k~FI~e~A~~AL~amv~~----vs~--~~ll~~L~----~~ 207 (324)
. +..+.||++.++..|+..+... +....+.+-.||..++.. +.| ..+++.|. ..
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM 606 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2 4668899999999998776552 111224455555555443 333 12333332 22
Q ss_pred cc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 208 LK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 208 ~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
.+ ..++..+..+..++..++...+++....+ .+.+++.+...++....+.+.++..++..+....
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 22 35778888889999888887555544444 6677777777776666788888888888777665
No 75
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.79 E-value=0.58 Score=49.11 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=114.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhH---cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 87 LVAGLDSKDWVVVCEALNNVRRLSIF---HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 87 ~l~~L~s~dW~~r~eaL~~LRrLa~~---h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
.+..+.+++-.-+..++..+-+++.+ |++ .+..++..+...+.+ ..|...||.++..++..+++.+.||++
T Consensus 494 ~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~----~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~ 567 (963)
T 2x19_B 494 LIPRISISNVQLADTVMFTIGALSEWLADHPV----MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA 567 (963)
T ss_dssp HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH----HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33445545566677788877777654 443 466677777788887 568899999999999999999999999
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhc----c-CCCHHHHHHH---HHHHHhh
Q 020587 164 PLLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYL----K-NRNPRIRAKA---SMCFSRS 226 (324)
Q Consensus 164 ~ll~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~----~-hKNp~VR~~a---a~~L~~~ 226 (324)
.++..|+.-+.. -..-.++.+-.|+..++..+++.. +++.+...+ + ..++..|... ..+|..+
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i 647 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNL 647 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999998876653 355677888888888887765222 222222211 1 2366665543 3444444
Q ss_pred ccccccc---------------------chhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhh
Q 020587 227 VPRLGVE---------------------GIKEYGIDKLIQVAASQLS--DQLPESREAARTLLLELQSVYEK 275 (324)
Q Consensus 227 v~~~g~~---------------------~i~~~~~~~ll~~l~~~L~--D~~pEvR~~AR~~l~~L~~~~~~ 275 (324)
+..++.. .+.. -.+.+.+.+.+.++ -.++++++.+-+++..+...++.
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~ 718 (963)
T 2x19_B 648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD 718 (963)
T ss_dssp HHHCCSSCCC---------------CCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Confidence 4443321 0111 13444444444332 13568888888787776666653
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.68 E-value=0.096 Score=53.44 Aligned_cols=59 Identities=14% Similarity=-0.002 Sum_probs=39.3
Q ss_pred ccCCCH--HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587 208 LKNRNP--RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY 273 (324)
Q Consensus 208 ~~hKNp--~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~ 273 (324)
++|+|. .|.-.++.++..+- .. ..-+...+..+.++|...++++|+.|-..+..+...+
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~----~~---~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD----SE---PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----CC---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred ccccchHHHHHHHHHHHHHhcC----Cc---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 345555 56555555555432 11 0115567788889999999999999999888776554
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.38 E-value=0.33 Score=46.11 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=101.9
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHh--hhhHHHHHHHHccCcch----HHHHHHHHHHHHHHHHh--
Q 020587 84 VKTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDI--LGDVIPLVVKSLKNPRS----AVCKTAIMTAADIFSAY-- 154 (324)
Q Consensus 84 L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~--L~~iv~~l~~~vksLRS----~Vsk~A~~tl~dLf~~L-- 154 (324)
+..++..| ++.+...+..++..|+.|+.++++.-... -...++.++..+++... .|.++|+-++..|...+
T Consensus 172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence 44555543 56778888888889999987554321111 24577888888876543 58999999999887632
Q ss_pred hhhHHhh-H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 155 NDRMIDL-L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 155 ~~~m~~~-~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
...-... . ...++.|+......+.-+.+.|..||..++...... -.+|.|..-++++++.+|..++..|.+
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1221111 1 136788888887777778999999998876432221 246678888889999999999999999
Q ss_pred hccc
Q 020587 226 SVPR 229 (324)
Q Consensus 226 ~v~~ 229 (324)
+...
T Consensus 332 L~~~ 335 (354)
T 3nmw_A 332 LMAN 335 (354)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9886
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.29 E-value=0.66 Score=45.75 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=103.3
Q ss_pred HHHHHhh-cCCCCHHHHHHHHHHHHHHHhHcHHHHHHh--hhhHHHHHHHHccCcch----HHHHHHHHHHHHHHHHh--
Q 020587 84 VKTLVAG-LDSKDWVVVCEALNNVRRLSIFHKEAMLDI--LGDVIPLVVKSLKNPRS----AVCKTAIMTAADIFSAY-- 154 (324)
Q Consensus 84 L~~~l~~-L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~--L~~iv~~l~~~vksLRS----~Vsk~A~~tl~dLf~~L-- 154 (324)
+..++.. +.+.+...+..++..|+.|+.++++.-... -...++.++..+.+... .+.++|+-++..|...+
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 4456665 356788888889999999988654322111 24577888888876543 58999999999888631
Q ss_pred hhhHHhh-H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 155 NDRMIDL-L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 155 ~~~m~~~-~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
...-... . ...++.|+......+.-+.+.|..||..++..... .-.++.|...++++++.+|..++..|.+
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2222222 1 13678888888777777999999999888743222 1246677788889999999999999999
Q ss_pred hcccc
Q 020587 226 SVPRL 230 (324)
Q Consensus 226 ~v~~~ 230 (324)
++..-
T Consensus 448 L~~~~ 452 (458)
T 3nmz_A 448 LMANR 452 (458)
T ss_dssp HHTCC
T ss_pred HHcCC
Confidence 88763
No 79
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.28 E-value=0.64 Score=45.10 Aligned_cols=110 Identities=18% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+..++..|++.+-..+..|...|+.|+..+++.-... -...++.++..++ +....+..+|+-++..|... ...-...
T Consensus 46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i 124 (457)
T 1xm9_A 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEEL 124 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHH
Confidence 5677888888888899999999999988655433222 1346788888888 78889999999999999876 2111112
Q ss_pred HHHHHHHHHHHh--------cCC--------hHHHHHHHHHHHHHHHhh
Q 020587 162 LDPLLVQLLLKS--------SQD--------KRFVCEAAEKALVAMTTW 194 (324)
Q Consensus 162 ~d~ll~~LL~Ka--------~~s--------k~FI~e~A~~AL~amv~~ 194 (324)
++..++.|+... ... ..-+...|..||..++.+
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 336777777776 221 223444777777776654
No 80
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.91 Score=47.81 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=125.6
Q ss_pred HHHHHhhcCCC-CHH--HHHHHHHHHHHHHhH-cHHHHHHh--hhhHHHHHHHHccC-c------------chHH-HHHH
Q 020587 84 VKTLVAGLDSK-DWV--VVCEALNNVRRLSIF-HKEAMLDI--LGDVIPLVVKSLKN-P------------RSAV-CKTA 143 (324)
Q Consensus 84 L~~~l~~L~s~-dW~--~r~eaL~~LRrLa~~-h~~~l~~~--L~~iv~~l~~~vks-L------------RS~V-sk~A 143 (324)
++.++..|.+. +.. -+..|...|-+|.+. +|..+.+. ..+.++.++..+.. + ++.+ ..+|
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feA 579 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA 579 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHH
Confidence 45566666655 332 578888889898864 47765421 12678888888771 2 3334 6699
Q ss_pred HHHHHHHHHHhh---hhHHh-hHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh--hhh-----------HHHH
Q 020587 144 IMTAADIFSAYN---DRMID-LLD--PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP--ILL-----------LPKL 204 (324)
Q Consensus 144 ~~tl~dLf~~L~---~~m~~-~~d--~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~--~~l-----------l~~L 204 (324)
++++.-|+..=. ..... .+. ..++.|.....+.+..|+.+|..++..++.+-.. .++ ++.|
T Consensus 580 L~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lL 659 (778)
T 3opb_A 580 LLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL 659 (778)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHH
Confidence 999999987531 12211 222 3677777777778999999999999998865432 122 5567
Q ss_pred hhhccCCCHHHHHHHHHHHHhhcccccc--cchhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Q 020587 205 QPYLKNRNPRIRAKASMCFSRSVPRLGV--EGIKEYGIDKLIQVAASQLSD--QLPESREAARTLLLELQS 271 (324)
Q Consensus 205 ~~~~~hKNp~VR~~aa~~L~~~v~~~g~--~~i~~~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L~~ 271 (324)
...+...+..+|+.++..|..+...... ..+. .....++.+...+.| .++++|..|-.++.-|..
T Consensus 660 V~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll--~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 660 VKLLQLSDVESQRAVAAIFANIATTIPLIAKELL--TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT--TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH--HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7788899999999999988887542211 1122 234566667777778 799999999888876655
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.17 E-value=0.041 Score=43.96 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+..+...|+++||..|..|+..|.++.. + -+..+++.+++....|-..|+.+++.+..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~---------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD--E---------AFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS--T---------THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h---------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 34467777888899888777766554421 1 13667788889888898999988776531
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587 163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR 225 (324)
Q Consensus 163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~ 225 (324)
...++.|+..+.+.+..||..|-.+|..+- ....++.|...+++.++.||..++..|..
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 234566666666778899999999998753 45678888888899999999999877643
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.08 E-value=0.055 Score=50.00 Aligned_cols=81 Identities=16% Similarity=0.019 Sum_probs=67.3
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHH---HHHHHHccCcchHHHHHHHHHHHHHHHHhh
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVI---PLVVKSLKNPRSAVCKTAIMTAADIFSAYN 155 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv---~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~ 155 (324)
.|...+..+++++.+++|..|.+.|..+..+...|.-. -...+ +.|.+.+.|..+.|=.+|+.|+.++|...|
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 55556778888999999999999999999997766321 13356 889999999999999999999999999999
Q ss_pred hhHHhhHH
Q 020587 156 DRMIDLLD 163 (324)
Q Consensus 156 ~~m~~~~d 163 (324)
+.+-.++.
T Consensus 240 d~v~k~lg 247 (266)
T 2of3_A 240 DQMWKAAG 247 (266)
T ss_dssp THHHHHHC
T ss_pred HHHHHHHh
Confidence 98766653
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.95 E-value=0.11 Score=53.24 Aligned_cols=164 Identities=21% Similarity=0.155 Sum_probs=103.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
..+..++.++....|+.|-.||.-|+-+ .+++.. +..+++.++..+.|.-=-|--.|..++..++ ....
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~---- 331 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS---- 331 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST----
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh----
Confidence 3455566666788999999999999988 334433 7888888888888776666666777766666 2222
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh----cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587 162 LDPLLVQLLLKSS--QDKRFVCEAAEKALVAMTTW----VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235 (324)
Q Consensus 162 ~d~ll~~LL~Ka~--~sk~FI~e~A~~AL~amv~~----vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i 235 (324)
++.++..|-.... ++-..-....-.-|.+++.+ ...+.++|.|.+.+.|--+.||..+.+.+...+ .
T Consensus 332 l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~--- 404 (800)
T 3oc3_A 332 LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----E--- 404 (800)
T ss_dssp HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----C---
T ss_pred HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----h---
Confidence 3333333322222 21000001111122222222 233479999999999999999999999987777 1
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 236 KEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
-+.+--.--..|-+.++++|+.+.++..
T Consensus 405 ----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 405 ----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112223345678999999999998773
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.61 E-value=0.52 Score=50.56 Aligned_cols=170 Identities=10% Similarity=0.068 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC--cchHHHHHHHHHHHHHHHHhhhhHH-hhHHHHHHHHHH
Q 020587 95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN--PRSAVCKTAIMTAADIFSAYNDRMI-DLLDPLLVQLLL 171 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks--LRS~Vsk~A~~tl~dLf~~L~~~m~-~~~d~ll~~LL~ 171 (324)
+|..+..+-+.|+.++...++.+...+- ..+...+.+ ..=...-.||.+++-+...+...++ ++++.+++.|+.
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~~~l~~v~---~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~ 502 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVIDTEEIMI---SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD 502 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH
Confidence 3555656666777776544543322222 222223321 2223455688888888776665554 447777777775
Q ss_pred Hhc-----CChHHHHHHHHHHHHHHHhhc--Ch---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchh-----
Q 020587 172 KSS-----QDKRFVCEAAEKALVAMTTWV--SP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIK----- 236 (324)
Q Consensus 172 Ka~-----~sk~FI~e~A~~AL~amv~~v--s~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~----- 236 (324)
-.. +.+..++..+-.++..+..+. ++ ..+++.|..++.+.|+.||..+|..+.++++..+.. +.
T Consensus 503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~ 581 (1049)
T 3m1i_C 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH-FVIQQPR 581 (1049)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH-HHSCCTT
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCC
Confidence 332 123334434556666444442 22 225556778899999999999999999999875433 22
Q ss_pred ---hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587 237 ---EYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269 (324)
Q Consensus 237 ---~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L 269 (324)
.+ .+.+++.+...+.+-..+.+...-+++..+
T Consensus 582 ~~~p~-~~~il~~l~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 582 ESEPF-IQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp CSSCH-HHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22 677888777778776666665544444433
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.57 E-value=0.5 Score=50.86 Aligned_cols=92 Identities=22% Similarity=0.214 Sum_probs=64.2
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhhHHHHh-hhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587 166 LVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILLLPKLQ-PYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL 243 (324)
Q Consensus 166 l~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~-~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l 243 (324)
+..||+.+. +.+.+||..|-.+|..|.-. .+ ..++.+. ...++.+|.||..++..|-.+.. |. +...+
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~-e~v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn------~~~~a 648 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--GK------GLQSA 648 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SC-SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SS------CCHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CC------CcHHH
Confidence 445777754 55778888877777654332 23 3445444 45567889999998887765543 12 24667
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHH
Q 020587 244 IQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 244 l~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
++.+..++.|.+.+||+.|-.++.
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHH
Confidence 888999999999999999998875
No 86
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.57 E-value=0.76 Score=46.85 Aligned_cols=186 Identities=17% Similarity=0.132 Sum_probs=114.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH----hhhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA----YNDR 157 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~----L~~~ 157 (324)
.+..++..|.+.|-..+++|...|+.|+..+++.-... -...++.++..+++....|..+|+.++.-|... .+..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 36788889999998999999999999997665432211 234578899999999999999999999999752 2222
Q ss_pred HHhhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcCh---------hhhHHHH-hhhcc-------------CCCH
Q 020587 158 MIDLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSP---------ILLLPKL-QPYLK-------------NRNP 213 (324)
Q Consensus 158 m~~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~---------~~ll~~L-~~~~~-------------hKNp 213 (324)
+.. ...++.|+..+.. ....+.+.|..||-.+..+-.. +.++..| .++.. ...+
T Consensus 129 I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 129 IKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 221 1345666655543 3456778888787665442111 1122222 11111 1247
Q ss_pred HHHHHHHHHHHhhccccc--ccchhh-cc-HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHH
Q 020587 214 RIRAKASMCFSRSVPRLG--VEGIKE-YG-IDKLIQVAASQL--SDQLPESREAARTLLLELQ 270 (324)
Q Consensus 214 ~VR~~aa~~L~~~v~~~g--~~~i~~-~~-~~~ll~~l~~~L--~D~~pEvR~~AR~~l~~L~ 270 (324)
.|+..++.+|.++...-. ...+.. .| .+.|+..+...+ .+.+....+.+-.+++.|.
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 999999999998875321 112222 12 456676666554 3444555555554554443
No 87
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.39 E-value=0.11 Score=44.45 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=62.0
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhh
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+.+.. .+++||+-...++......|+
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 4445777788888999999999999999999999887633333445566666666655 678999999999887777776
Q ss_pred hc
Q 020587 275 KS 276 (324)
Q Consensus 275 ~~ 276 (324)
..
T Consensus 129 ~~ 130 (163)
T 1x5b_A 129 KD 130 (163)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 88
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.12 E-value=0.31 Score=40.91 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=64.1
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ 270 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~ 270 (324)
|...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+.+.+ .+++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455777788888999999999999999999999887644445667888888888875 37899999988887777
Q ss_pred HHhhh
Q 020587 271 SVYEK 275 (324)
Q Consensus 271 ~~~~~ 275 (324)
..|+.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77653
No 89
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.05 E-value=0.1 Score=43.39 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=62.5
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~ 276 (324)
|...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+.+...+++||+-...++......|+..
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44477778888999999999999999999999988763333344556666666666788999999999998888877644
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.03 E-value=0.91 Score=48.63 Aligned_cols=138 Identities=9% Similarity=0.041 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCc----chHHHH-HHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587 93 SKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNP----RSAVCK-TAIMTAADIFSAYNDRMIDLLDPLL 166 (324)
Q Consensus 93 s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksL----RS~Vsk-~A~~tl~dLf~~L~~~m~~~~d~ll 166 (324)
+.+|..+.-+|-.+..++....+... ..+..++..+.....-. ...+.+ .+|.+++.+...+... ..++..++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 46999999999999988653322222 23566666655533221 123444 6889999888777654 46789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----------h----hHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587 167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----------L----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231 (324)
Q Consensus 167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----------~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g 231 (324)
+.|+....+.+.-|+..|..|+..+++.+... . ++..|......-...-+..+.+.+..++...+
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 99999888888999999999999999987642 1 22223333333344445566666666666655
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.83 E-value=0.97 Score=46.40 Aligned_cols=152 Identities=16% Similarity=0.065 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh
Q 020587 75 IDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY 154 (324)
Q Consensus 75 ~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L 154 (324)
.+...|.+....++..|=+..|+.|-.|---||.+.+.|..-. +.. ...+. --|+
T Consensus 167 ~~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-GR~-----------~~~N~---DLAv---------- 221 (800)
T 3oc3_A 167 RPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-DIQ-----------IRVDS---KLFS---------- 221 (800)
T ss_dssp -CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----CC-----------CCCCT---THHH----------
T ss_pred cCCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-cee-----------ccccH---HHHH----------
Confidence 4456777766788888999999999999999999999886422 111 11111 1122
Q ss_pred hhhHHhhHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHhhcChh-hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 155 NDRMIDLLDPLLVQLLLKSSQ-----DKRFVCEAAEKALVAMTTWVSPI-LLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 155 ~~~m~~~~d~ll~~LL~Ka~~-----sk~FI~e~A~~AL~amv~~vs~~-~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
..++--.|.|.+| .-.-|||.+..+|.++ .++++. +++..|...+.+...+||-....-|-.+-
T Consensus 222 --------RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~- 291 (800)
T 3oc3_A 222 --------KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLK- 291 (800)
T ss_dssp --------HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-
T ss_pred --------HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHH-
Confidence 1222233455543 2568999999999999 888665 35555667778889999987655555441
Q ss_pred cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587 229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL 267 (324)
Q Consensus 229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~ 267 (324)
+ +.. .++.+++++..+|.|.+-|||..|-.++.
T Consensus 292 ----D-LL~-~Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 292 ----E-FVE-DKDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp ----G-GCC-CHHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred ----H-HHH-HHHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 1 221 28999999999999999999999987663
No 92
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.78 E-value=0.17 Score=42.65 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=64.2
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ 270 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~ 270 (324)
|...+..|..-++|+||.+.-.+..+|..|+++-|..-.....-..+++.+.+.+.+ .+++||+-...++....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 455777888888999999999999999999999888744444567777888888876 47899999999988777
Q ss_pred HHhhh
Q 020587 271 SVYEK 275 (324)
Q Consensus 271 ~~~~~ 275 (324)
..|++
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77753
No 93
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.55 E-value=0.78 Score=50.01 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcc-----hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Q 020587 95 DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPR-----SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQ 168 (324)
Q Consensus 95 dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLR-----S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~ 168 (324)
+|.....++-.++.++..- ++.-...|.++++.++......| --|+.+.|-++|...+.+..+ -.+++.++..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~ 570 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNK 570 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHH
Confidence 6999999999999997543 34445678888887777665554 344444566888888888765 4589999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhcChh----------hhHH-HH---hhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587 169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPI----------LLLP-KL---QPYLKNRNPRIRAKASMCFSRSVPRLGVE 233 (324)
Q Consensus 169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----------~ll~-~L---~~~~~hKNp~VR~~aa~~L~~~v~~~g~~ 233 (324)
|+..+.++++-|.+.|..|+..+++.|... ..+. .+ .....+-.+.-.......+..++...+.+
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999998753 1233 22 23333445555555566666666666554
No 94
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.12 E-value=5.4 Score=42.02 Aligned_cols=210 Identities=8% Similarity=0.031 Sum_probs=132.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchH---HHHHHHHHHHHHHHHhhhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSA---VCKTAIMTAADIFSAYNDR 157 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~---Vsk~A~~tl~dLf~~L~~~ 157 (324)
.+..+...+++.+-..+..+...|..|+..- ...+.. ...++.++..+.+--.. +-.+|+.+++.|...-.+.
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 3455667777888888999999999887541 222221 24556677766655332 5568999888888554322
Q ss_pred HH--h-hHHHHHHHHHHHhcC-Ch-H------------HHHHHHHHHHHHHHhhcCh------h------hhHHHHhhhc
Q 020587 158 MI--D-LLDPLLVQLLLKSSQ-DK-R------------FVCEAAEKALVAMTTWVSP------I------LLLPKLQPYL 208 (324)
Q Consensus 158 m~--~-~~d~ll~~LL~Ka~~-sk-~------------FI~e~A~~AL~amv~~vs~------~------~ll~~L~~~~ 208 (324)
.. . ..-..+++|+..... .. . .-.-+|-.||.-++..-.. . ..++.|...+
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 21 1 112677888877652 11 1 1133566666666554311 1 2456777888
Q ss_pred cCCCHHHHHHHHHHHHhhcccccccch-hhc---cHH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 020587 209 KNRNPRIRAKASMCFSRSVPRLGVEGI-KEY---GID---KLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAP 281 (324)
Q Consensus 209 ~hKNp~VR~~aa~~L~~~v~~~g~~~i-~~~---~~~---~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~ 281 (324)
.+-|..||+.++.++.+++.. +..+ ..+ +-+ .=++.+.+++...+.++|.+|-.++..+-..++..+..-
T Consensus 616 ~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l- 692 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMSH--PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL- 692 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH-
T ss_pred hCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH-
Confidence 889999999999999999973 3332 121 212 237788889999999999999999988876666543200
Q ss_pred CCCCCCcchhHHHHHHHh
Q 020587 282 ATVSDSPEMDSWENFCQS 299 (324)
Q Consensus 282 ~~~~~~~~~~~w~~~~~~ 299 (324)
-.....-+.|-..|+.
T Consensus 693 --l~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 693 --LTKKELIENAIQVFAD 708 (778)
T ss_dssp --TTCHHHHHHHHHHHHH
T ss_pred --HHccccHHHHHHHHhc
Confidence 0111245788889988
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.48 E-value=1.8 Score=44.42 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=58.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHH-HHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIP-LVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~-~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
.+..+++.|.|.|...|..|+..|..|+. .+....-.+ ..++. .+...+.|....|..+|.-++.-|+..-|.++-.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34578889999999999999999999986 454333223 33554 4566789999999999999999888776655443
Q ss_pred h
Q 020587 161 L 161 (324)
Q Consensus 161 ~ 161 (324)
+
T Consensus 114 ~ 114 (684)
T 4gmo_A 114 H 114 (684)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.36 E-value=5.6 Score=40.44 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=106.8
Q ss_pred CHHH-HHHHHHHHHHHHhHcHH---HHHHhhhhHHHHHHHHcc------CcchHHHHHHHHHHHHHHHHhhhhHH---hh
Q 020587 95 DWVV-VCEALNNVRRLSIFHKE---AMLDILGDVIPLVVKSLK------NPRSAVCKTAIMTAADIFSAYNDRMI---DL 161 (324)
Q Consensus 95 dW~~-r~eaL~~LRrLa~~h~~---~l~~~L~~iv~~l~~~vk------sLRS~Vsk~A~~tl~dLf~~L~~~m~---~~ 161 (324)
+|.. +..|...||-|+..+++ .+. ..+.++..++..++ +....+..+|+-++.-|...+...+. .+
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~-~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLR-ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 3544 55577888888776543 222 12334444444443 35667888888888777755433221 00
Q ss_pred ------------------H-----HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhc-----------ChhhhHHHHhh
Q 020587 162 ------------------L-----DPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWV-----------SPILLLPKLQP 206 (324)
Q Consensus 162 ------------------~-----d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~v-----------s~~~ll~~L~~ 206 (324)
+ ...++.|+..+. .++.-+.+.|..||..++..- .....+|.|..
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 0 134566666663 346788999999998876432 22346788889
Q ss_pred hccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCC--------CHHHHHHHHHHHH
Q 020587 207 YLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ--------LPESREAARTLLL 267 (324)
Q Consensus 207 ~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~--------~pEvR~~AR~~l~ 267 (324)
.+.+.+..|+..++..|.++...-....+. ....++.+..+|..+ +.+++..|-.++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 999999999999999999988743332222 245667777788776 4677766655554
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.33 E-value=4.1 Score=43.76 Aligned_cols=180 Identities=12% Similarity=0.115 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587 94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS 173 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka 173 (324)
++..-+-.+...++|+...-...+.+.+..++..++. +....-....+..++.|...+|+++.+.++.++++|+.++
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~---~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~i 789 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN---SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRI 789 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH---HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777665455566788888877774 3334445567888999999999999999999999999874
Q ss_pred ----cC---------ChHHHHHHHHHHHHHHHhhc-Chh-----------hhHHHHhhhc-cCCCHHHHHHHHHHHHhhc
Q 020587 174 ----SQ---------DKRFVCEAAEKALVAMTTWV-SPI-----------LLLPKLQPYL-KNRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 174 ----~~---------sk~FI~e~A~~AL~amv~~v-s~~-----------~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v 227 (324)
.+ .+.+++.+--.-|..|+.+- +.- .++..|..+. .+..+..++.+..+|.+++
T Consensus 790 f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v 869 (980)
T 3ibv_A 790 FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV 869 (980)
T ss_dssp HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 22 12334444444566666632 221 2344455554 4688999999999999999
Q ss_pred ccccccc----hhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhhhcC
Q 020587 228 PRLGVEG----IKEYGIDKLIQVAASQLSDQL-----PESREAARTLLLELQSVYEKSH 277 (324)
Q Consensus 228 ~~~g~~~----i~~~~~~~ll~~l~~~L~D~~-----pEvR~~AR~~l~~L~~~~~~~a 277 (324)
+.||..+ ...|-.+ +++.+-....+++ ...|...-.+...++.+|.+.+
T Consensus 870 ~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g 927 (980)
T 3ibv_A 870 SLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG 927 (980)
T ss_dssp HC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 9997543 3334466 7887766665554 4455555566666666666554
No 98
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.93 E-value=0.37 Score=41.40 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=62.3
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLEL 269 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L 269 (324)
.+...+..|..-++|+|+.+...+..+|..|+++-|..--....-..+++.+.+.+.. .+++||+-...++...
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3444777888889999999999999999999999887633344566777777777763 4689999999998877
Q ss_pred HHHhh
Q 020587 270 QSVYE 274 (324)
Q Consensus 270 ~~~~~ 274 (324)
...|+
T Consensus 127 ~~~f~ 131 (171)
T 1juq_A 127 TMALP 131 (171)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 77775
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.48 E-value=4.5 Score=36.65 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587 162 LDPLLVQLLL-KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI 240 (324)
Q Consensus 162 ~d~ll~~LL~-Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~ 240 (324)
...+++.+.. -+.+.+=-|++-+..++...+....|.++++.+..-+++.|+-||+.+...+-. |+...-.....
T Consensus 101 ~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rp----W~~~~~~k~dp 176 (240)
T 3l9t_A 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRI----WTNRPYFKENP 176 (240)
T ss_dssp SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCS----GGGSTTTTTCH
T ss_pred cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHH----HhccchhhcCH
Confidence 3556665555 345667779999999999999888888899999999999999999999887653 33221123468
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 241 DKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
+.+++.+..+..|.+.-||.+-=..|.-
T Consensus 177 ~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 177 NEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp HHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999887666643
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.23 E-value=7.5 Score=34.66 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=72.4
Q ss_pred HHHHHHHHccCcch--HHHHHHHHHHHHHHHHhhhhHHhhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-
Q 020587 124 VIPLVVKSLKNPRS--AVCKTAIMTAADIFSAYNDRMIDLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL- 199 (324)
Q Consensus 124 iv~~l~~~vksLRS--~Vsk~A~~tl~dLf~~L~~~m~~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~- 199 (324)
.++.++..+.+... .+-.+|+.++.-|+..-...-...+ ...+|.|+......+.-+++.|..||..+....+..+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35667777777766 8888888888877754321111111 1356889888887889999999999998876433332
Q ss_pred ------hHHHHhhhcc-CCCHHHHHHHHHHHHhhc
Q 020587 200 ------LLPKLQPYLK-NRNPRIRAKASMCFSRSV 227 (324)
Q Consensus 200 ------ll~~L~~~~~-hKNp~VR~~aa~~L~~~v 227 (324)
.+|.|...++ +.+..++..++..|..+-
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4566777776 578999999886666554
No 101
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.05 E-value=9 Score=34.82 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=87.7
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
.+-.++..... .| ..+++.|..+|.|+.+. |.+ +.++++.++....+.+..|-|-....+.+.|.. -..
T Consensus 16 ~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~l----l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~ 86 (257)
T 3gs3_A 16 KVVDWCNELVIASP-STKCELLAKVQETVLGSCAEL----AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVE 86 (257)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGG----HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGG
T ss_pred HHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhH----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHH
Confidence 34455555543 56 79999999999998763 543 455555566667778888888888777777732 234
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHH--------HHHHHhhcCh----hhhHH-------HHhhhccCCCHHHHHHHHH
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKA--------LVAMTTWVSP----ILLLP-------KLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~A--------L~amv~~vs~----~~ll~-------~L~~~~~hKNp~VR~~aa~ 221 (324)
++..+++.|.....+....|...+-.| +..++.+-.. ..+.. .|.....+.|.-||..+.+
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 566777777666666544443333333 3344443221 22222 3455577899999999999
Q ss_pred HHHhhcc
Q 020587 222 CFSRSVP 228 (324)
Q Consensus 222 ~L~~~v~ 228 (324)
++..++-
T Consensus 167 F~e~vIl 173 (257)
T 3gs3_A 167 FLEGVVV 173 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 102
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.96 E-value=1.1 Score=39.98 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=61.9
Q ss_pred cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHh
Q 020587 195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVY 273 (324)
Q Consensus 195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~ 273 (324)
..+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+++.. .+++||+-...++......|
T Consensus 41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45666888899889999999999999999999999887633333334444445444433 46899999999998888777
Q ss_pred hhcC
Q 020587 274 EKSH 277 (324)
Q Consensus 274 ~~~a 277 (324)
....
T Consensus 121 ~~~~ 124 (226)
T 3zyq_A 121 RNEP 124 (226)
T ss_dssp TTCG
T ss_pred CCCc
Confidence 6543
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=89.07 E-value=0.95 Score=40.06 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=60.7
Q ss_pred ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhh
Q 020587 196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
.+...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+++. ..+++||+....++......|.
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 556677888888899999999999999999999987753233333445555555554 4578999999988888777776
Q ss_pred hc
Q 020587 275 KS 276 (324)
Q Consensus 275 ~~ 276 (324)
..
T Consensus 119 ~~ 120 (220)
T 1dvp_A 119 SS 120 (220)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 104
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=88.58 E-value=1.2 Score=37.43 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=59.6
Q ss_pred ChhhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHH-HHHhcc---CCCHHHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV-AASQLS---DQLPESREAARTLLLELQ 270 (324)
Q Consensus 196 s~~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~-l~~~L~---D~~pEvR~~AR~~l~~L~ 270 (324)
.+...+..|..-++ ++|+.+...+..+|..|+++-|..--....-..+++. +.+.+. +...+||+-...++....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 44557777887887 5999999999999999999988764333445566665 666664 345689999888888777
Q ss_pred HHhhh
Q 020587 271 SVYEK 275 (324)
Q Consensus 271 ~~~~~ 275 (324)
..|+.
T Consensus 130 ~~f~~ 134 (157)
T 1elk_A 130 DAFRS 134 (157)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 77753
No 105
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.51 E-value=19 Score=32.70 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587 163 DPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238 (324)
Q Consensus 163 d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~ 238 (324)
..-+-.||+.+.. ++.--.+.-..+-+.++. -.| +.+++-+.+.....+..||+..+.++...+..- ..
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~-~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k------~~ 86 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLG-SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK------VE 86 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GG
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHc-cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH------HH
Confidence 3455667777765 332222222222222232 233 234555666666799999999999998887441 12
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHH-HHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhc
Q 020587 239 GIDKLIQVAASQLSDQLPESREAARTLLL-ELQSVYEKSHDSAPATVSDSPEMDSWENFCQSK 300 (324)
Q Consensus 239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~-~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~ 300 (324)
-...+++.+..+++|.++.|-+.+=.+.. .+..+|..-+..+ ..++...+.|+.+++-|
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~---~~~~~~~~~W~~m~~lK 146 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM---EPGDSAEQAWNILSLIK 146 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS---SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcchHHHHHHHHHHHH
Confidence 37889999999999999887655555444 3334444444211 12233478999988754
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.23 E-value=23 Score=33.57 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=92.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhHcH----HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 86 TLVAGLDSKDWVVVCEALNNVRRLSIFHK----EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~----~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+|+.+...+.+--.+|..+++.|...|+ +++..++..+....-+.+.+-+=..-|.++..+|+|...=
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr------- 240 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR------- 240 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG-------
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCc-------
Confidence 56667778889999999999999988885 5566678888888889999999999999999999885431
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc-c---cchhh
Q 020587 162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG-V---EGIKE 237 (324)
Q Consensus 162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g-~---~~i~~ 237 (324)
. | -..|..+++...-|..+-..+++++..|+-.+.-.+--.|..=. + ..+..
T Consensus 241 -----------~---N----------~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 241 -----------H---N----------FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp -----------G---G----------HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred -----------h---H----------HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence 1 0 12355555555555555555555555555554433333332200 0 11223
Q ss_pred ccHHHHHHHHHHhccCC
Q 020587 238 YGIDKLIQVAASQLSDQ 254 (324)
Q Consensus 238 ~~~~~ll~~l~~~L~D~ 254 (324)
...++|+..+..|..|.
T Consensus 297 ~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 297 KNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HTHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 35888888888888888
No 107
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.79 E-value=16 Score=35.30 Aligned_cols=124 Identities=18% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC
Q 020587 97 VVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ 175 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~ 175 (324)
..+++.|..++.|+.+ +|. .|.++++.++....+....|=|-....+++.|.. -..++..+++.|...+.+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 4799999999998764 464 4566777777777788888888888888888853 122345555555555555
Q ss_pred ChHHHHHHHHHH--------HHHHHhhcCh----hhhHH-------HHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587 176 DKRFVCEAAEKA--------LVAMTTWVSP----ILLLP-------KLQPYLKNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 176 sk~FI~e~A~~A--------L~amv~~vs~----~~ll~-------~L~~~~~hKNp~VR~~aa~~L~~~v~ 228 (324)
....|...+-.| +..++.+-.. ..+.. .|.....+.|.-||..+.+|+..+|-
T Consensus 112 ~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 433333333332 3333333221 12222 34555678999999999999999884
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=85.44 E-value=17 Score=32.77 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=85.4
Q ss_pred hhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh----hcC
Q 020587 122 GDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT----WVS 196 (324)
Q Consensus 122 ~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~----~vs 196 (324)
.+++..+.. ...+--=.|.-.+...+++++...+. +.+++.+..=+.+.+-.||-.|...+.-.+. ...
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d 175 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN 175 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC
Confidence 334444444 33344455666666666666653322 2356677777889999999998888654333 367
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587 197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l 266 (324)
|..+++.|.....+.+--||..++-+|..+-+.. .+.+...+..-.. .+++++..-|.+.
T Consensus 176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~---------Pd~V~~~~~~w~~-~~~~~~~i~k~A~ 235 (240)
T 3l9t_A 176 PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF---------PDLVKIELKNWKL-ESKEINQVYKLAS 235 (240)
T ss_dssp HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC---------HHHHHHHHHTCCC-CSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC---------HHHHHHHHHHhhc-cCHhHHHHHHHHH
Confidence 7889999999999999999999999988765532 3444444444332 3678777777664
No 109
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=85.43 E-value=0.5 Score=51.12 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=80.5
Q ss_pred HHHHHHhhhh----HHhhHHH-HHHHHHHHhcCChH-HHHHH-HHHHHHHHHhhcChhhhHH----HHhhhcc-CCCHHH
Q 020587 148 ADIFSAYNDR----MIDLLDP-LLVQLLLKSSQDKR-FVCEA-AEKALVAMTTWVSPILLLP----KLQPYLK-NRNPRI 215 (324)
Q Consensus 148 ~dLf~~L~~~----m~~~~d~-ll~~LL~Ka~~sk~-FI~e~-A~~AL~amv~~vs~~~ll~----~L~~~~~-hKNp~V 215 (324)
.-|...++.. +.+++.. ++|.|++....+.. -+... +..++..|.+..-+...++ .|....+ +.|. +
T Consensus 739 ~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~ 817 (997)
T 1vsy_5 739 YWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-Q 817 (997)
T ss_dssp HHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-S
T ss_pred HHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-H
Confidence 3455555544 6677766 77777766654433 45555 6666777665544544444 4445455 5788 9
Q ss_pred HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Q 020587 216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQL-PESREAARTLLLELQSVY 273 (324)
Q Consensus 216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~-pEvR~~AR~~l~~L~~~~ 273 (324)
|..+..++-..+-+.-- .+.......+.+.+..+|.|.. .|||+.|..+|..|....
T Consensus 818 R~~~L~~lq~~~f~n~f-~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 818 TKLQLAFIQHFLSAELL-QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHHHHHHHHTT-TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 99888776544443110 1112246789999999999999 999999999998775554
No 110
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.27 E-value=6.3 Score=42.63 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH--------HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587 121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM--------IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT 192 (324)
Q Consensus 121 L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m--------~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv 192 (324)
|+.++..+...+.+....|+..||.++..|++..+..+ .||++.++..+..-+..-..--...+-.|+..|+
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55666777888877777899999999999999999888 4799999988887765444445578888999999
Q ss_pred hhcChhh
Q 020587 193 TWVSPIL 199 (324)
Q Consensus 193 ~~vs~~~ 199 (324)
++.++..
T Consensus 618 ~~~~~~~ 624 (1023)
T 4hat_C 618 SEERSVA 624 (1023)
T ss_dssp TTCCSHH
T ss_pred HhCCCHh
Confidence 9987543
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.94 E-value=44 Score=33.34 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=100.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID 160 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~ 160 (324)
+.....++.+.+... +.+.-|-+.|-+..++.|++-. +.+.+++..+.+--.+|=++|+.-+-.+++. .
T Consensus 28 ~~~y~~Il~~~kg~~-k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~ 96 (507)
T 3u0r_A 28 KDAYQVILDGVKGGT-KEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG------E 96 (507)
T ss_dssp HHHHHHHHHGGGSCH-HHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------T
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------h
Confidence 345667777665543 3344456667777677776443 3455667778887888878887666555543 4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI 240 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~ 240 (324)
++..+.-.|......+-..-.+....+|..+... .|...+..|...+..-...+|.++..+|..-+..++.+-+..-.-
T Consensus 97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E 175 (507)
T 3u0r_A 97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175 (507)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence 4555555555555444555667777777766553 344444433333322368999999999988888877764422224
Q ss_pred HHHHHHHHHhccCCCH
Q 020587 241 DKLIQVAASQLSDQLP 256 (324)
Q Consensus 241 ~~ll~~l~~~L~D~~p 256 (324)
+.+...+.+.|.|=+.
T Consensus 176 ~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 176 ELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHhccccH
Confidence 4556666777766654
No 112
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=81.06 E-value=6.9 Score=32.35 Aligned_cols=89 Identities=8% Similarity=0.024 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHHHHhhcChhh-hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhc
Q 020587 175 QDKRFVCEAAEKALVAMTTWVSPIL-LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQL 251 (324)
Q Consensus 175 ~sk~FI~e~A~~AL~amv~~vs~~~-ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L 251 (324)
+++.-|..-..-|+ .|....+ ++..+...+++-+|.-+-....+++.++++.|.+-...| .+..++..+.
T Consensus 22 nSk~~I~~LT~~a~----~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~--- 94 (144)
T 1sz9_A 22 NSRPIITTLTKLAE----ENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY--- 94 (144)
T ss_dssp CCHHHHHHHHHHHH----HTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH---
T ss_pred ccHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH---
Confidence 45555655443333 3454444 667788888877888888888999999998887633223 2333333333
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 020587 252 SDQLPESREAARTLLLELQ 270 (324)
Q Consensus 252 ~D~~pEvR~~AR~~l~~L~ 270 (324)
...++++|..-.+++..-.
T Consensus 95 ~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 95 LLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HTSCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHh
Confidence 3356888877777764433
No 113
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=80.15 E-value=17 Score=37.53 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=113.9
Q ss_pred CHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh
Q 020587 79 DIDTSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND 156 (324)
Q Consensus 79 dpe~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~ 156 (324)
.+.+.+..+.+.|+ +.--++|.+|+..||.+++.++..+.. -|+.++..+.+- .--..++|.++.|+.-++..-..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCc
Confidence 66778888999886 457889999999999999988766543 255444433332 13457788888888776653221
Q ss_pred h------------H-HhhHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh--hh-------hHHHHhhhc
Q 020587 157 R------------M-IDLLD------PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP--IL-------LLPKLQPYL 208 (324)
Q Consensus 157 ~------------m-~~~~d------~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~--~~-------ll~~L~~~~ 208 (324)
. + ..+.| .-++.|+.......-.+|-.+-..|..++.+-+. ++ -++.|...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 0 0 11222 3477788888877888999999999998877544 22 344677888
Q ss_pred cCCCHHHHHHHHHHHHhhcccccc-cchhhc--cHHHHHHHHH
Q 020587 209 KNRNPRIRAKASMCFSRSVPRLGV-EGIKEY--GIDKLIQVAA 248 (324)
Q Consensus 209 ~hKNp~VR~~aa~~L~~~v~~~g~-~~i~~~--~~~~ll~~l~ 248 (324)
++.+-.||..+..+|..+...-.. ..+..| +.++++..+.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 889999999999999988884311 122223 4666666664
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=80.08 E-value=1.7 Score=44.62 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=52.8
Q ss_pred hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID-KLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~-~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
.+++|.|.. +++-++..|..++..|..+++. ++.......+ .+...+..+|.|.+.+||..|-.+|..|...
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 457777654 7889999999999999999963 3311112223 3445678899999999999999998766543
No 115
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=78.34 E-value=76 Score=33.91 Aligned_cols=188 Identities=12% Similarity=0.109 Sum_probs=110.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhH----c-----HHHHHHhhhhHHHHHHHHccCcc-----h----------HH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF----H-----KEAMLDILGDVIPLVVKSLKNPR-----S----------AV 139 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~----h-----~~~l~~~L~~iv~~l~~~vksLR-----S----------~V 139 (324)
+..++.-.+.++++.-..++..+..+... . ++.+.+.+..++..++..++-.- . .-
T Consensus 334 l~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e 413 (980)
T 3ibv_A 334 FPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQE 413 (980)
T ss_dssp HHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHH
Confidence 33444555667777666666666665432 0 23445667777777777665211 0 11
Q ss_pred HHHHHHHHHHHHHHhhhhH-HhhHHHHHHHHHHH-hcCC---hHHHHHHHHHHHHHHHhhcC------------hhhhHH
Q 020587 140 CKTAIMTAADIFSAYNDRM-IDLLDPLLVQLLLK-SSQD---KRFVCEAAEKALVAMTTWVS------------PILLLP 202 (324)
Q Consensus 140 sk~A~~tl~dLf~~L~~~m-~~~~d~ll~~LL~K-a~~s---k~FI~e~A~~AL~amv~~vs------------~~~ll~ 202 (324)
-|.-+.++-|.+..++..+ ..++-..+..++.. ..+. +=-..|++--+|.++.+.+. .+++++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 3333334455555555332 33233344444433 3222 22334444444555555543 224666
Q ss_pred HHhhhc-----cCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHhh
Q 020587 203 KLQPYL-----KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS--QLSDQLPESREAARTLLLELQSVYE 274 (324)
Q Consensus 203 ~L~~~~-----~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~--~L~D~~pEvR~~AR~~l~~L~~~~~ 274 (324)
.|..-+ .+.+|.||..++..+.+.-+-+..+. . -++.+++.+.. ++.+.++.+|.+|-.++..|-+.-.
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~-~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--A-AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--T-THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--h-hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 554443 38899999999999998877654331 2 27888888888 9999999999999999987765544
No 116
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=78.25 E-value=30 Score=29.25 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=62.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH--HHHHHH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL--DPLLVQ 168 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~--d~ll~~ 168 (324)
+.++||..-.+=.+.|+.=. + .-.+.+++|.+-+++.+..|.-.|+..+-.+.+..|..|..++ ...+..
T Consensus 26 l~~~Dw~~ileicD~I~~~~----~----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINKEL----E----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp CSSCCHHHHHHHHHHHHHST----T----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCC----c----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 44689998877766665531 1 2356678889999999999999999999999999998886543 233333
Q ss_pred HHHHhc------CChHHHHHHHHHHHHHHHh
Q 020587 169 LLLKSS------QDKRFVCEAAEKALVAMTT 193 (324)
Q Consensus 169 LL~Ka~------~sk~FI~e~A~~AL~amv~ 193 (324)
|.+.+. .+..-|++-+-..+..+..
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 333332 2344555555555544443
No 117
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.75 E-value=3.2 Score=34.55 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=48.4
Q ss_pred hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhcc--------CCCHHHHHHHHHHHH
Q 020587 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQLS--------DQLPESREAARTLLL 267 (324)
Q Consensus 198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~--------D~~pEvR~~AR~~l~ 267 (324)
..++..|..-+++|++.+..++.++|..|+.. |.+.+... ....+++.+..|-. |....||+.|+.++.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 45777888888888999999999999988865 55433321 11123333332221 333789999999986
Q ss_pred HHHHHhhhcC
Q 020587 268 ELQSVYEKSH 277 (324)
Q Consensus 268 ~L~~~~~~~a 277 (324)
-+|....
T Consensus 127 ---ll~d~~~ 133 (140)
T 1vdy_A 127 ---AIFSEEN 133 (140)
T ss_dssp ---HHTCCSS
T ss_pred ---HHhCcCC
Confidence 4444443
No 118
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=76.96 E-value=9.9 Score=41.07 Aligned_cols=150 Identities=12% Similarity=0.039 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh-H-HhhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhc-C
Q 020587 121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR-M-IDLLDPLLVQLLLKSSQDK-RFVCEAAEKALVAMTTWV-S 196 (324)
Q Consensus 121 L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~-m-~~~~d~ll~~LL~Ka~~sk-~FI~e~A~~AL~amv~~v-s 196 (324)
+..++..+....++-.|= .|.+.+..-..|....-- + ....+.+...++....|.. -=||+.|..+|..|+.+. .
T Consensus 799 ~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 799 VAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 334444444444433455 777777774444431110 1 1233566777777788877 779999999999999665 3
Q ss_pred hhh---hHHHHhhhc-cCC-CH----------HHHHHHHHHHHhhcccccccch--hhccHHHHHHHHHHhccCCCHHHH
Q 020587 197 PIL---LLPKLQPYL-KNR-NP----------RIRAKASMCFSRSVPRLGVEGI--KEYGIDKLIQVAASQLSDQLPESR 259 (324)
Q Consensus 197 ~~~---ll~~L~~~~-~hK-Np----------~VR~~aa~~L~~~v~~~g~~~i--~~~~~~~ll~~l~~~L~D~~pEvR 259 (324)
... ++..+...+ +++ -. ..|-.+..-|..+|.-..= .+ ... ++.++..++...+|..| ++
T Consensus 878 ~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py-~vP~P~w-~P~~l~~La~~~~~~~~-i~ 954 (997)
T 1vsy_5 878 EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPY-VFPLPPW-IPKNLSNLSSWARTSGM-TG 954 (997)
T ss_dssp HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSC-CSSCCTH-HHHHHHHHHTTSSSCSS-HH
T ss_pred hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCC-CCCCCcc-cHHHHHHHHHHhCCCCc-hH
Confidence 233 333333333 211 11 2222333344444443211 11 223 77888999999999666 99
Q ss_pred HHHHHHHHHHHHHhh
Q 020587 260 EAARTLLLELQSVYE 274 (324)
Q Consensus 260 ~~AR~~l~~L~~~~~ 274 (324)
..+++++..+++...
T Consensus 955 ~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 955 NAAKNTISEFKKVRA 969 (997)
T ss_dssp HHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccc
Confidence 999999987776654
No 119
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.75 E-value=17 Score=31.77 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHH-HHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHH
Q 020587 92 DSKDWVVVCEALNN-VRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLL 170 (324)
Q Consensus 92 ~s~dW~~r~eaL~~-LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL 170 (324)
...+|=..|+.+.. ++.+...||+. +...+.++++|-+--+-|.|+.+. |.-.-..+.+.+++.+-
T Consensus 99 ~~~~nWd~~D~~a~~~~~~~~~~~~~-------~~~~i~~W~~s~~~w~rR~ai~~~------l~~~~~~~~~~~~~i~~ 165 (220)
T 2b6c_A 99 PQKAWWDSVDAWRKFFGSWVALHLTE-------LPTIFALFYGAENFWNRRVALNLQ------LMLKEKTNQDLLKKAII 165 (220)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSGGG-------HHHHHHHHTTCSSHHHHHHHHHTT------TTCGGGCCHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHChHH-------HHHHHHHHHcCCCHHHHHHHHHHH------HHHHHCCCHHHHHHHHH
Confidence 34555556666642 44444444432 233467899999999999998744 22222355677776666
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHH
Q 020587 171 LKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 171 ~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~ 221 (324)
....+.-.||+.+...+|..+... .|..+++-| ...+-.+.+++++.+
T Consensus 166 ~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl--~~~~l~~~~~r~Aik 213 (220)
T 2b6c_A 166 YDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM--KELVLSPLAQREGSK 213 (220)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH--HHSCCCHHHHHHHTT
T ss_pred HhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH--hhccCCHHHHHHHHH
Confidence 677888899999999999987765 777777777 334555666666643
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.11 E-value=25 Score=33.87 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=62.7
Q ss_pred hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHhhhc
Q 020587 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ-SVYEKS 276 (324)
Q Consensus 198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~-~~~~~~ 276 (324)
..+++.|......++..||+.++.+|...+.+- .+. ...+++.+..++.|.++.|-+.+-.+...+. .+|..-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777788888899999999999999888631 112 6889999999999999987655555444322 333322
Q ss_pred CCCCCCCCCCCcchhHHHHHHHhc
Q 020587 277 HDSAPATVSDSPEMDSWENFCQSK 300 (324)
Q Consensus 277 a~~~~~~~~~~~~~~~w~~~~~~~ 300 (324)
...+ ..++.-.+.|+.+++-+
T Consensus 136 ~~~~---~~~~~~e~~W~~m~~lK 156 (386)
T 3o2t_A 136 VKSR---VISELQEACWDMVSAMA 156 (386)
T ss_dssp HHC----CCCHHHHHHHHHHHHHH
T ss_pred hcCC---CcchhHHHHHHHHHHHH
Confidence 2111 11223467899988765
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.77 E-value=34 Score=27.83 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=47.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
.+.++||..-.+=.+.++.= ++ .=.+.+++|.+-+++-+..|.-.|+..+..+.+..|..|..+
T Consensus 17 ~l~~~dw~~ileicD~I~~~----~~----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 17 MNTAEDWGLILDICDKVGQS----RT----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp TSSSCCHHHHHHHHHHHTTS----TT----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHCC----Cc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 35678999887777765531 21 124567788888998888999999998888888888887644
No 122
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=72.20 E-value=32 Score=28.56 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=48.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||..-.+=.+.|+.= + ..-.+.+++|.+-++ +.+..|.-.|+..+-.+.++.|..|..++
T Consensus 29 l~~~Dw~~~leicD~I~~~----~----~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 29 LQSEDWALNMEICDIINET----E----EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp CSSCCHHHHHHHHHHHHHS----S----SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCC----C----ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3468999988777766542 1 123566788889997 57889999999999999999998876543
No 123
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.52 E-value=1e+02 Score=33.17 Aligned_cols=97 Identities=8% Similarity=-0.042 Sum_probs=55.9
Q ss_pred HHHHHHHHccCcc--------hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 020587 124 VIPLVVKSLKNPR--------SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV 195 (324)
Q Consensus 124 iv~~l~~~vksLR--------S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v 195 (324)
++..+...+.+-. ..+...||+.+|-++.+-++. .++..|+..+.++...+++.|.-+|..+....
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 4444445555443 456667777777765544321 23333333344445577778888887766555
Q ss_pred ChhhhHHHHhhh-ccCCCHHHHHHHHHHHHhh
Q 020587 196 SPILLLPKLQPY-LKNRNPRIRAKASMCFSRS 226 (324)
Q Consensus 196 s~~~ll~~L~~~-~~hKNp~VR~~aa~~L~~~ 226 (324)
.....+..|... ....+-.+|+.++..|..+
T Consensus 504 gn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 504 GKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 555666654433 3455667888777776644
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.46 E-value=49 Score=27.65 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=47.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+.++||..-.+=.+.|+.= + ..-.+.+++|.+-+++-+..|.-.|+..+-.+.+..|..|..+
T Consensus 28 ~~~~Dw~~~leicD~I~~~----~----~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGST----P----NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CSSCCHHHHHHHHHHHHHS----S----SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCC----C----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999988777666642 1 1234567788888888889999999999888888888776543
No 125
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=66.52 E-value=88 Score=32.16 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh---hHHHHHHHHccCcchHHHHHHHHHHHHHHHH---hhh
Q 020587 83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG---DVIPLVVKSLKNPRSAVCKTAIMTAADIFSA---YND 156 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~---~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~---L~~ 156 (324)
-+..+++.|++.|...|+.+++.|+.|+.+.|+.....+- .-+..++..+++-|-.+=-+|+..+.+|... +++
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3567788899999999999999999999999886654332 4578889999999977777799888888765 222
Q ss_pred h--HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 020587 157 R--MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW 194 (324)
Q Consensus 157 ~--m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~ 194 (324)
- |+.-+|.++..+-..-+-..-.|.++.-..|..+.++
T Consensus 203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 2 2334565555555544433456666666666666655
No 126
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.94 E-value=21 Score=31.40 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=76.3
Q ss_pred CCCHHHHHHHH--HHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHH
Q 020587 93 SKDWVVVCEAL--NNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLL 170 (324)
Q Consensus 93 s~dW~~r~eaL--~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL 170 (324)
..+|=..|+.+ ..+..+...||+. +...+..++.|-+-=+.|.|+.+. +....+...+.++..+.
T Consensus 106 ~~~nWd~~D~~a~~~~g~~~~~~p~~-------~~~~l~~W~~s~~~w~rR~ai~~~------l~~~~~~d~~~~~~~i~ 172 (232)
T 3jxy_A 106 TKSWWDSVDSIVPTFLGDIFLKHPEL-------ISAYIPKWIASDNIWLQRAAILFQ------LKYKQKMDEELLFWIIG 172 (232)
T ss_dssp SSCCHHHHHHHTTTHHHHHHHHCGGG-------GGGTHHHHHHSSCHHHHHHHHHTT------TTCGGGCCHHHHHHHHH
T ss_pred cCCChHHHHHhhHHHHHHHHHHCHHH-------HHHHHHHHhcCCchHHHHHHHHHH------HHHHhCCCHHHHHHHHH
Confidence 34444556665 2344555555542 223456788899999999998754 22122334455666666
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587 171 LKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFS 224 (324)
Q Consensus 171 ~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~ 224 (324)
....+.-.||+.+...+|..+... .|..+++.|..+ +-.+.+++++.+.|.
T Consensus 173 ~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 173 QLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYVQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHHHS--CCCHHHHHHHTTTTH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHC--CCCHHHHHHHHHhcc
Confidence 667888999999999999987765 788888877765 455677777766553
No 127
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.33 E-value=1.1e+02 Score=28.99 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH----cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh
Q 020587 79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF----HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY 154 (324)
Q Consensus 79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~----h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L 154 (324)
.|......++++|.+.+=..+..+|..|+++... -++|+. .+=+..+++.+.... =.+.+...++|
T Consensus 115 sps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~---~~GL~~Li~vi~~~~-------gN~q~Y~L~AL 184 (339)
T 3dad_A 115 QLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH---SEGLSCLIRVGAAAD-------HNYQSYILRAL 184 (339)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH---TTHHHHHHHHHTTSC-------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH---hccHHHHHHHHHhcC-------hHHHHHHHHHH
Confidence 6777788999999888888899999999995432 345553 112334444444442 23344555555
Q ss_pred hhhHH
Q 020587 155 NDRMI 159 (324)
Q Consensus 155 ~~~m~ 159 (324)
+.-|+
T Consensus 185 ~~LM~ 189 (339)
T 3dad_A 185 GQLML 189 (339)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 54444
No 128
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.56 E-value=66 Score=26.39 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=63.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH--HHHHH
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL--DPLLV 167 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~--d~ll~ 167 (324)
.+.++||..-.+=.+.|+.=. . .=.+.+++|.+-+++.+..|.-.|+..+-.+.++.|..|..++ ...+.
T Consensus 13 ~l~~~dw~~~leicD~I~~~~-~-------~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 13 SMSEQDWSAIQNFCEQVNTDP-N-------GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp TCSSCCHHHHHHHHHHHHHSS-H-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCC-c-------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 355789998877777666531 1 1345677888999999999999999999999999998886554 34444
Q ss_pred HHHHHhcC------ChHHHHHHHHHHHHHHH
Q 020587 168 QLLLKSSQ------DKRFVCEAAEKALVAMT 192 (324)
Q Consensus 168 ~LL~Ka~~------sk~FI~e~A~~AL~amv 192 (324)
.|.+.+.. +..-|++-.-..+..+.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44444432 24455554444444433
No 129
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=61.19 E-value=7.9 Score=32.40 Aligned_cols=79 Identities=8% Similarity=0.000 Sum_probs=55.7
Q ss_pred ChhhhHHHHhhhccC-CCHHHHHHHHHHHHhhcccccccchhhccHHHHHH-HHHHhccCC---CHHHHHHHHHHHHHHH
Q 020587 196 SPILLLPKLQPYLKN-RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ-VAASQLSDQ---LPESREAARTLLLELQ 270 (324)
Q Consensus 196 s~~~ll~~L~~~~~h-KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~-~l~~~L~D~---~pEvR~~AR~~l~~L~ 270 (324)
.|...+..|..-+++ +|+.+...+..+|..|+++-|..--....-..+++ .+.+++.+. ..+||+-...++....
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 345577777766764 79988888899999999998886444444455554 477777764 3478888888887666
Q ss_pred HHhh
Q 020587 271 SVYE 274 (324)
Q Consensus 271 ~~~~ 274 (324)
..|+
T Consensus 130 ~~F~ 133 (152)
T 3rru_A 130 QGFP 133 (152)
T ss_dssp TCCS
T ss_pred HHhC
Confidence 6665
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=59.98 E-value=2e+02 Score=31.33 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=53.8
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHHHHHhhcC--hh---hhHHHHhhhccC------------CCHHHHHHHHHHHH
Q 020587 165 LLVQLLLKS---SQDKRFVCEAAEKALVAMTTWVS--PI---LLLPKLQPYLKN------------RNPRIRAKASMCFS 224 (324)
Q Consensus 165 ll~~LL~Ka---~~sk~FI~e~A~~AL~amv~~vs--~~---~ll~~L~~~~~h------------KNp~VR~~aa~~L~ 224 (324)
+++.|+... .....-++...-.++.....+.+ |. +++..|..++.+ -+..||+.++..+.
T Consensus 530 ~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~ 609 (1204)
T 3a6p_A 530 DGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSII 609 (1204)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHH
Confidence 455555542 12234477777777777666653 32 244455555544 35589999999999
Q ss_pred hhcccccccchhhccHHHHHHHHHHhccC
Q 020587 225 RSVPRLGVEGIKEYGIDKLIQVAASQLSD 253 (324)
Q Consensus 225 ~~v~~~g~~~i~~~~~~~ll~~l~~~L~D 253 (324)
+++...+.. +..+ .+.|...+...+..
T Consensus 610 ~L~~~~~~~-L~p~-~~~i~~~~~~~l~~ 636 (1204)
T 3a6p_A 610 KMCRDYPQL-VLPN-FDMLYNHVKQLLSN 636 (1204)
T ss_dssp HHHHHCHHH-HGGG-HHHHHHHHHHHHHS
T ss_pred HHHHHhhHH-HHHH-HHHHHHHHHHHHhC
Confidence 998876543 4444 66777776665543
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.74 E-value=73 Score=26.26 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=48.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||..-.+=.+.|+.=. . .=.+.+++|.+-+++.+..|.-.|+..+..+.++.|..|..++
T Consensus 24 l~~~dw~~ileicD~I~~~~-~-------~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei 87 (149)
T 3g2s_A 24 NKELDWASINGFCEQLNEDF-E-------GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 87 (149)
T ss_dssp CSSCCHHHHHHHHHHGGGSS-S-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC-C-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45679998877777655421 1 1245677888999999999999999999999999998876543
No 132
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.80 E-value=35 Score=25.81 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcccccccchhhc---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 214 RIRAKASMCFSRSVPRLGVEGIKEY---GIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 214 ~VR~~aa~~L~~~v~~~g~~~i~~~---~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
.||.++..+=..++..-|+...... .+..++-.+-..=.|+||++|++=|+++...+..
T Consensus 14 ~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~l 75 (89)
T 2d9d_A 14 KVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHH
Confidence 4555655554444444444333211 4777777888888999999999999998765544
No 133
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=56.96 E-value=45 Score=36.26 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=57.9
Q ss_pred HcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH--------HhhHHHHHHHHHHHhcCChHHHHHH
Q 020587 112 FHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM--------IDLLDPLLVQLLLKSSQDKRFVCEA 183 (324)
Q Consensus 112 ~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m--------~~~~d~ll~~LL~Ka~~sk~FI~e~ 183 (324)
.|++++ +.++..+...+.+....|...||.|+..++...++.| .|+++.++..+-.-.+.=..--...
T Consensus 559 ~h~~~L----~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 559 AHWKFL----KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HCHHHH----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred hCHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 355544 4555566788888899999999999999999999887 4688888877665544322222233
Q ss_pred HHHHHHHHHhhcChh
Q 020587 184 AEKALVAMTTWVSPI 198 (324)
Q Consensus 184 A~~AL~amv~~vs~~ 198 (324)
--.|+..|+...++.
T Consensus 635 lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhCCCc
Confidence 445677777777653
No 134
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=56.49 E-value=56 Score=35.63 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHh---HcHHHHHHhhhhHHHHHHH----HccCcch----HHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587 98 VVCEALNNVRRLSI---FHKEAMLDILGDVIPLVVK----SLKNPRS----AVCKTAIMTAADIFSAYNDRMIDLLDPLL 166 (324)
Q Consensus 98 ~r~eaL~~LRrLa~---~h~~~l~~~L~~iv~~l~~----~vksLRS----~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll 166 (324)
-+...+..+-++.. +||+++.+.|..+...+.. ..+..|| .|.+.||.++..|+..++..|.|+++.+.
T Consensus 548 l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~ 627 (1204)
T 3a6p_A 548 ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLY 627 (1204)
T ss_dssp HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444433 4677666666666555432 1233444 68899999999999999999999999888
Q ss_pred HHHHH
Q 020587 167 VQLLL 171 (324)
Q Consensus 167 ~~LL~ 171 (324)
..+-.
T Consensus 628 ~~~~~ 632 (1204)
T 3a6p_A 628 NHVKQ 632 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86544
No 135
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=56.06 E-value=92 Score=27.01 Aligned_cols=132 Identities=15% Similarity=0.080 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhHcHHHHHHhhhh-HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC
Q 020587 97 VVVCEALNNVRRLSIFHKEAMLDILGD-VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ 175 (324)
Q Consensus 97 ~~r~eaL~~LRrLa~~h~~~l~~~L~~-iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~ 175 (324)
..+.+||..||.=.--|+ +.|.+-. +...+...++|+ .+-..-+..+.-|..+=.-.++||+-.++|.+|...-.
T Consensus 23 ~~r~~aL~sL~~D~gL~~--LlPyf~~fI~~~v~~nl~~l--~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~ 98 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQ--LVPYFIQHISELILKSFKEA--EVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIG 98 (196)
T ss_dssp TTHHHHHHHHHHCSSCTT--THHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChhh--hHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHh
Confidence 347788888886332221 1111111 122334444432 22233333333333333345689999999988866421
Q ss_pred ChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC--
Q 020587 176 DKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-- 253 (324)
Q Consensus 176 sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-- 253 (324)
+++ .+. .+|..+|.++..++.+.|..- ..-..++.+.+.+.+.|
T Consensus 99 -k~l----------------~~~---------------~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 99 -KSI----------------VDD---------------DVRKMSADIVKYIYDTYSRSY--KTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp -TTC----------------CCH---------------HHHHHHHHHHHHHHHHHTTTS--TTHHHHHHHHHHHHHTCTT
T ss_pred -ccc----------------CHH---------------HHHHHHHHHHHHHHHHhCccC--chHHHHHHHHHHHHHcCCC
Confidence 111 110 678888888888888776531 11246677777777665
Q ss_pred CCHHHHHHHHHHH
Q 020587 254 QLPESREAARTLL 266 (324)
Q Consensus 254 ~~pEvR~~AR~~l 266 (324)
.+..+++-|-..+
T Consensus 145 ~~l~t~YGAi~GL 157 (196)
T 4atg_A 145 RSEDSQYGALYCL 157 (196)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 3455555544444
No 136
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=55.03 E-value=22 Score=28.97 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=24.2
Q ss_pred HHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChh
Q 020587 241 DKLIQVAASQ-LSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPL 304 (324)
Q Consensus 241 ~~ll~~l~~~-L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~ 304 (324)
..++.++.++ =--++..+|+.|-.+|..|..+|--.. +.+-|+.||..++.-.
T Consensus 50 pe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~~ge-----------g~~fw~~~~~~~~~~~ 103 (127)
T 1z9e_A 50 TEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGE-----------GDSVITQVLNKSLAEQ 103 (127)
T ss_dssp HHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCC-----------CchHHHHHHHHHHHhh
Confidence 3344444433 223459999999999999999996222 4688999999887654
No 137
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=52.44 E-value=47 Score=27.57 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=45.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
.+.++||....+=.+.|+.=. . .=.+.+++|.+-++ +.+..+...|+..+..+.++.|..|..++
T Consensus 28 ~l~~~Dw~~ileicD~In~~~-~-------~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 28 GVQTEDWGQFMHICDIINTTQ-D-------GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SCCSCCHHHHHHHHHHHHHST-T-------HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCC-c-------cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 345789998887777666421 1 23456677888887 46777788888888888888887765443
No 138
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=52.38 E-value=74 Score=25.07 Aligned_cols=102 Identities=7% Similarity=0.027 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc-
Q 020587 161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY- 238 (324)
Q Consensus 161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~- 238 (324)
+++..+...|.....++.-|.....-++. |... ..++..+...++.-++.-|-....++..++...+......+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~----h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIE----NKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHH----TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 45556666666677777667666665554 3433 33666666677666666666667777777766443322222
Q ss_pred -cHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587 239 -GIDKLIQVAASQLSDQLPESREAARTLLLE 268 (324)
Q Consensus 239 -~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~ 268 (324)
.....++.+...+ .+++.|..-++++..
T Consensus 81 ~~f~~~l~~~~~~~--~~~~~~~kl~~ll~i 109 (132)
T 4flb_A 81 ESFADVLPEAAALV--KDPSVSKSVERIFKI 109 (132)
T ss_dssp HHHHTTHHHHHHTT--CSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 1333333333333 256777776666643
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.13 E-value=1.2e+02 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.164 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL 161 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~ 161 (324)
+.++||....+=.+.|+. .++ .-.+.+++|.+-|++.+..|.-.|+..+..+.++.|..|..+
T Consensus 18 ~~~~dw~~~leicd~i~~----~~~----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 18 RLEPDWPSILLICDEINQ----KDV----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp CSSCCHHHHHHHHHHHHT----TSS----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCcCHHHHHHHHHhhcC----CCc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 457899987765555542 111 244677888899999999999999999999999988777553
No 140
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=47.35 E-value=1.2e+02 Score=26.39 Aligned_cols=51 Identities=12% Similarity=-0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhc-------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccc
Q 020587 179 FVCEAAEKALVAMTTWV-------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 179 FI~e~A~~AL~amv~~v-------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~ 229 (324)
.+..+.-.||.++..+- +.+..+..|..++.++++.+|..+.++|..++.-
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 33444555555554332 3334667788889999999999999988765553
No 141
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=42.95 E-value=1e+02 Score=29.21 Aligned_cols=51 Identities=12% Similarity=-0.084 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhc-------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccc
Q 020587 179 FVCEAAEKALVAMTTWV-------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 179 FI~e~A~~AL~amv~~v-------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~ 229 (324)
-+....-+||.++..+. ..+..+..|..++.++++.+|..+.++|..++.-
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~ 192 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 192 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 45566778888776543 3344677788889999999999999999876654
No 142
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=41.13 E-value=1.9e+02 Score=25.62 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587 84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD 163 (324)
Q Consensus 84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d 163 (324)
..-+|+...-.|=+.++.=---|.+++..+|+.+.. +.+.+..-+.|..-.=--.|+..+ .++|..--.|+-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~----v~rdi~smltskd~~Dkl~aLnFi----~alGen~~~yv~ 180 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS----IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHTSCSSHHHHHHHHHHH----HTCCTTTHHHHG
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH----HHHHHHHHhcCCChHHHHHHHHHH----HHHhccCccccC
Confidence 445666666666666666555666777777765543 333344444555533333344333 344444344444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 020587 164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTT 193 (324)
Q Consensus 164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~ 193 (324)
..+|-|+...-|.+..||.+|-.||..+..
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 555666677777788888888877776543
No 143
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=40.90 E-value=1.1e+02 Score=28.98 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=24.2
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHhhccc
Q 020587 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPR 229 (324)
Q Consensus 199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~ 229 (324)
..+..|..++.++++.+|..+..+|..++..
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 3556777888899999999998888766553
No 144
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=39.91 E-value=27 Score=31.16 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=15.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHH
Q 020587 245 QVAASQLSDQLPESREAARTLL 266 (324)
Q Consensus 245 ~~l~~~L~D~~pEvR~~AR~~l 266 (324)
+.+..+ .|.++.||+++...+
T Consensus 221 ~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 221 EALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHc-cCCCHHHHHHHHHHh
Confidence 455556 999999999987543
No 145
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=38.62 E-value=24 Score=31.50 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=25.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHH
Q 020587 169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASM 221 (324)
Q Consensus 169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~ 221 (324)
|...+.+...+||..+-..| ++ +.|...+++.++.||..++.
T Consensus 103 L~~ll~D~d~~VR~~aA~~l-------~~----~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL-------PL----EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------CT----GGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC-------CH----HHHHHHHcCCCHHHHHHHHH
Confidence 33445666777777766542 21 12344467788888887776
No 146
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=31.55 E-value=1.1e+02 Score=26.40 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc--CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587 94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK--NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171 (324)
Q Consensus 94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk--sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~ 171 (324)
.||..-..-+..++.|.....-.+.+.+|.+++.++.++= ++-.. .+..+.-.++..+..
T Consensus 58 ~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~------------------~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------------------DVRKMSADIVKYIYD 119 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH------------------HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH------------------HHHHHHHHHHHHHHH
Confidence 3888887788888888665444566888999888877652 12110 344455555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 020587 172 KSSQDKRFVCEAAEKALV 189 (324)
Q Consensus 172 Ka~~sk~FI~e~A~~AL~ 189 (324)
+.+++...++....+++.
T Consensus 120 ~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHTTTSTTHHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHH
Confidence 555554455444444433
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.91 E-value=2.9e+02 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587 91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL 162 (324)
Q Consensus 91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~ 162 (324)
+.++||....+=.+.|+.= .. .=.+.+++|.+-+++.+..|.-.|+..+..+.++.|..|..++
T Consensus 21 ~~~~dw~~ileicD~I~~~-~~-------~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei 84 (226)
T 3zyq_A 21 LLETDWESILQICDLIRQG-DT-------QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV 84 (226)
T ss_dssp CSSCCHHHHHHHHHHHHTT-SS-------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCC-Cc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 3467999888777776531 11 1255678889999999999999999999999999998776543
No 148
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=27.25 E-value=2.6e+02 Score=22.96 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=51.0
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587 199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD 278 (324)
Q Consensus 199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~ 278 (324)
+--..+..+++.|||..=.++..+ ...+.+=+.-=+||+|.+..+++...+.+|.....
T Consensus 46 ~~e~e~i~alK~KSp~L~~K~~~l---------------------~~~lk~Ki~~L~Peak~Fv~kli~~~r~l~~~~~~ 104 (140)
T 2w9y_A 46 SQCGEMIDEVSKKHPELGKRLATV---------------------LEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTV 104 (140)
T ss_dssp ---TTHHHHHHHHCHHHHHHHHHH---------------------HHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHH---------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333456667777777665554443 33444444444899999999999999999998543
Q ss_pred CCCCCCCCCcchhHHHHHHH--hcCChhhHHHHHH
Q 020587 279 SAPATVSDSPEMDSWENFCQ--SKLSPLSAQAVLR 311 (324)
Q Consensus 279 ~~~~~~~~~~~~~~w~~~~~--~~l~~~~~~~~~~ 311 (324)
+. +.+ .++--.+.+ ..||+.+.+++.+
T Consensus 105 G~---k~~---~~~lK~~~~~ykaLS~~aK~dL~k 133 (140)
T 2w9y_A 105 GK---PID---DADAKRLHQEFQSLSSEDQAALRK 133 (140)
T ss_dssp TC---CCC---THHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CC---CCC---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 111 111111222 5688887777654
No 149
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=27.10 E-value=4.8e+02 Score=27.93 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHhhhc--cCCCHHHHHHHHHHHHhhcc
Q 020587 178 RFVCEAAEKALVAMTTWVSPILLLPKLQPYL--KNRNPRIRAKASMCFSRSVP 228 (324)
Q Consensus 178 ~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v~ 228 (324)
.-|+.+|-.||..+.. ..|..+-+.+.+-. ....+.||..++..|..+-.
T Consensus 492 ~rvr~aAi~ALr~~~~-~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P 543 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAK-RDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKP 543 (1056)
T ss_dssp HHHHHHHHHTTTTGGG-TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhhh-hchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc
Confidence 4577888888888763 23444555555555 56889999999888876543
No 150
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=24.32 E-value=3.2e+02 Score=22.93 Aligned_cols=91 Identities=22% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc--chhhccHHHHHHHHHHhccC-CC
Q 020587 179 FVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE--GIKEYGIDKLIQVAASQLSD-QL 255 (324)
Q Consensus 179 FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~--~i~~~~~~~ll~~l~~~L~D-~~ 255 (324)
..-..+..+|..|...++.+.+-..|..++..-..+| .-|..|++++|.+ .....+++.++.....++.+ ++
T Consensus 26 ~aE~q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi-----~rLe~i~~~lg~~~~~~~c~am~gli~e~~~~~~~~~~ 100 (173)
T 2gyq_A 26 YAEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQI-----ERLDQVFKKLGQKPSGVNCPAIDGLIKEADETAGEIAD 100 (173)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTCCSCSCCCHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhccCC
Confidence 4445677788888888877667666766664322222 4567778877754 23324577777777666654 46
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020587 256 PESREAARTLLLELQSVYE 274 (324)
Q Consensus 256 pEvR~~AR~~l~~L~~~~~ 274 (324)
+++|.++.-.-..-..+|+
T Consensus 101 ~~v~da~li~aaq~~EhyE 119 (173)
T 2gyq_A 101 KTVLDAAIVANAQAVEHYE 119 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899998844443344444
No 151
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=22.36 E-value=3.4e+02 Score=22.55 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccc-cccc--chhhccHHHHHHHHHHhccCC-
Q 020587 179 FVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPR-LGVE--GIKEYGIDKLIQVAASQLSDQ- 254 (324)
Q Consensus 179 FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~-~g~~--~i~~~~~~~ll~~l~~~L~D~- 254 (324)
..-..+..+|..|...++.+.+-..|..++..-..+| .-|..|+++ +|.+ .+...+++.++.....++.+-
T Consensus 19 ~aE~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi-----~rLe~i~~~~lg~~~~~~~c~am~gli~e~~~~~~~~~ 93 (166)
T 2gs4_A 19 SAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQI-----ERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTE 93 (166)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhccC
Confidence 4446677888888888877777667776664322222 456778888 7753 233245788888777777644
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q 020587 255 LPESREAARTLLLELQSVYE 274 (324)
Q Consensus 255 ~pEvR~~AR~~l~~L~~~~~ 274 (324)
++++|.++.-.-..-..+|+
T Consensus 94 ~~~vlda~li~aaq~~EhyE 113 (166)
T 2gs4_A 94 KNEVRDAALIAAAQKVEHYE 113 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68899998844433334444
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.72 E-value=1.1e+02 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHH
Q 020587 81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKE 115 (324)
Q Consensus 81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~ 115 (324)
...+..++..|.++.|..++.+|..|..|+.+.++
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 35678888999999999999999999999876543
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.67 E-value=1.1e+02 Score=30.32 Aligned_cols=29 Identities=7% Similarity=-0.117 Sum_probs=24.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587 244 IQVAASQLSDQLPESREAARTLLLELQSV 272 (324)
Q Consensus 244 l~~l~~~L~D~~pEvR~~AR~~l~~L~~~ 272 (324)
-+.+.+++++.+++||+.|-.+++.++.+
T Consensus 449 K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 449 KADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44667899999999999999999877743
No 154
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=20.09 E-value=3.8e+02 Score=22.28 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=7.1
Q ss_pred HHHHHHhhcCCCCHH
Q 020587 83 SVKTLVAGLDSKDWV 97 (324)
Q Consensus 83 ~L~~~l~~L~s~dW~ 97 (324)
.+..+++.+...-|.
T Consensus 48 Il~AA~~lf~~~G~~ 62 (255)
T 3g1o_A 48 ILATAENLLEDRPLA 62 (255)
T ss_dssp HHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCc
Confidence 344455555444443
No 155
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=20.05 E-value=3.6e+02 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020587 256 PESREAARTLLLELQSVY 273 (324)
Q Consensus 256 pEvR~~AR~~l~~L~~~~ 273 (324)
.+....+.-++..+...+
T Consensus 186 ~~~~~~a~~~~~~~~g~~ 203 (236)
T 3q0w_A 186 LPAHELATALNLMNERTL 203 (236)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345555665555544444
Done!