Query 020588
Match_columns 324
No_of_seqs 112 out of 1167
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.3E-51 2.8E-56 393.6 23.9 300 12-319 31-337 (437)
2 PTZ00206 amino acid transporte 100.0 2.1E-45 4.6E-50 358.2 20.8 295 19-317 60-366 (467)
3 KOG1304 Amino acid transporter 100.0 4E-42 8.6E-47 324.0 19.5 286 17-315 45-348 (449)
4 PF01490 Aa_trans: Transmembra 100.0 2.5E-44 5.4E-49 345.4 -5.6 298 17-318 1-303 (409)
5 PLN03074 auxin influx permease 100.0 1.8E-37 3.8E-42 301.9 18.9 283 18-317 45-341 (473)
6 KOG1305 Amino acid transporter 100.0 3.8E-36 8.2E-41 285.9 14.5 299 15-320 2-312 (411)
7 COG0814 SdaC Amino acid permea 100.0 3.1E-31 6.7E-36 254.6 23.3 302 13-321 3-305 (415)
8 KOG4303 Vesicular inhibitory a 100.0 3.6E-32 7.7E-37 244.2 6.9 277 11-304 109-395 (524)
9 PRK09664 tryptophan permease T 99.9 2.3E-21 4.9E-26 184.3 23.2 296 14-319 4-316 (415)
10 PRK10483 tryptophan permease; 99.9 4.9E-21 1.1E-25 182.1 23.8 298 11-319 3-315 (414)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 5.3E-20 1.2E-24 175.8 21.7 292 17-319 1-307 (394)
12 PRK15132 tyrosine transporter 99.9 8.4E-20 1.8E-24 174.2 21.1 286 19-318 3-303 (403)
13 TIGR00837 araaP aromatic amino 99.8 8.3E-19 1.8E-23 167.4 20.7 285 24-318 2-300 (381)
14 PRK13629 threonine/serine tran 99.7 1.1E-15 2.3E-20 146.0 22.3 288 25-317 25-346 (443)
15 TIGR00814 stp serine transport 99.6 4.2E-14 9E-19 135.3 22.2 285 25-317 9-311 (397)
16 TIGR00912 2A0309 spore germina 99.1 2.3E-09 4.9E-14 101.6 16.7 238 17-272 1-241 (359)
17 PRK10655 potE putrescine trans 99.1 8.2E-09 1.8E-13 100.4 20.3 240 15-264 4-244 (438)
18 PRK10435 cadB lysine/cadaverin 99.1 1.6E-08 3.4E-13 98.4 20.1 244 14-268 2-246 (435)
19 TIGR00905 2A0302 transporter, 99.0 4E-08 8.7E-13 96.6 20.2 244 15-265 5-254 (473)
20 TIGR00909 2A0306 amino acid tr 99.0 4E-08 8.7E-13 95.2 19.7 240 16-265 2-251 (429)
21 PRK10644 arginine:agmatin anti 99.0 7.8E-08 1.7E-12 93.8 20.7 241 14-264 5-246 (445)
22 TIGR01773 GABAperm gamma-amino 99.0 1.7E-07 3.6E-12 91.6 22.8 236 15-264 10-256 (452)
23 PRK10249 phenylalanine transpo 99.0 3.1E-07 6.7E-12 90.0 24.6 235 17-263 21-263 (458)
24 TIGR03810 arg_ornith_anti argi 98.9 1.5E-07 3.2E-12 92.5 20.5 248 17-269 1-254 (468)
25 TIGR00913 2A0310 amino acid pe 98.9 4E-07 8.7E-12 89.6 22.9 237 16-262 1-250 (478)
26 TIGR00906 2A0303 cationic amin 98.9 4E-07 8.7E-12 91.3 22.2 244 13-263 24-285 (557)
27 PRK11387 S-methylmethionine tr 98.9 7.2E-07 1.6E-11 87.7 23.7 239 15-264 12-261 (471)
28 PRK11021 putative transporter; 98.9 2.5E-07 5.5E-12 89.3 20.1 229 20-263 2-231 (410)
29 PRK11049 D-alanine/D-serine/gl 98.9 4.6E-07 1E-11 89.0 21.8 240 13-264 16-266 (469)
30 PRK10580 proY putative proline 98.8 9.3E-07 2E-11 86.6 22.1 241 10-262 2-252 (457)
31 TIGR00930 2a30 K-Cl cotranspor 98.8 6.3E-07 1.4E-11 94.6 21.9 241 16-263 75-334 (953)
32 PRK10238 aromatic amino acid t 98.8 6.4E-07 1.4E-11 87.7 20.6 237 12-260 7-251 (456)
33 PRK15049 L-asparagine permease 98.8 2E-06 4.3E-11 85.2 23.3 239 16-264 27-275 (499)
34 PRK10836 lysine transporter; P 98.8 3.6E-06 7.8E-11 83.2 24.9 248 6-264 4-260 (489)
35 PF03845 Spore_permease: Spore 98.8 6.7E-07 1.5E-11 83.5 18.4 233 18-272 1-237 (320)
36 TIGR00911 2A0308 L-type amino 98.8 1.5E-06 3.2E-11 86.1 21.8 245 13-264 38-290 (501)
37 TIGR00908 2A0305 ethanolamine 98.7 9E-07 1.9E-11 86.2 18.9 239 12-262 2-244 (442)
38 PRK10746 putative transport pr 98.7 4.5E-06 9.7E-11 81.9 23.9 239 13-263 6-254 (461)
39 KOG1287 Amino acid transporter 98.7 1.6E-06 3.5E-11 83.7 17.5 243 11-267 6-262 (479)
40 COG0531 PotE Amino acid transp 98.6 3.4E-06 7.3E-11 82.3 20.0 256 9-270 4-262 (466)
41 PRK11357 frlA putative fructos 98.6 4.4E-06 9.4E-11 81.5 20.2 236 14-263 5-249 (445)
42 PF13520 AA_permease_2: Amino 98.6 2.8E-06 6.1E-11 82.1 17.7 240 20-270 2-247 (426)
43 PRK10197 gamma-aminobutyrate t 98.6 2.8E-05 6E-10 76.0 23.5 223 28-263 3-235 (446)
44 COG1113 AnsP Gamma-aminobutyra 98.4 4.1E-05 8.9E-10 73.2 19.4 243 13-271 9-270 (462)
45 TIGR03428 ureacarb_perm permea 98.2 0.00053 1.1E-08 67.6 23.1 249 15-266 11-270 (475)
46 TIGR00800 ncs1 NCS1 nucleoside 98.1 0.0011 2.5E-08 64.6 21.9 185 83-272 76-274 (442)
47 KOG3832 Predicted amino acid t 98.0 9.9E-05 2.1E-09 63.3 11.9 103 24-127 17-174 (319)
48 PRK15238 inner membrane transp 98.0 0.0012 2.6E-08 65.4 21.2 242 15-262 5-264 (496)
49 PF00324 AA_permease: Amino ac 97.9 0.00016 3.5E-09 71.2 12.0 234 28-270 6-261 (478)
50 TIGR00907 2A0304 amino acid pe 97.8 0.0047 1E-07 60.9 21.3 242 12-260 7-268 (482)
51 TIGR00910 2A0307_GadC glutamat 97.7 0.0018 3.8E-08 64.5 16.8 47 214-261 199-246 (507)
52 KOG1286 Amino acid transporter 97.7 0.00086 1.9E-08 67.0 13.8 247 14-263 27-286 (554)
53 COG0833 LysP Amino acid transp 97.6 0.0086 1.9E-07 58.8 19.6 233 16-259 43-284 (541)
54 PRK11375 allantoin permease; P 97.6 0.022 4.8E-07 56.3 22.7 186 83-272 89-294 (484)
55 COG1457 CodB Purine-cytosine p 97.4 0.03 6.4E-07 54.3 19.6 181 86-281 84-268 (442)
56 TIGR02358 thia_cytX probable h 97.3 0.035 7.5E-07 53.3 19.8 174 83-271 58-234 (386)
57 TIGR03813 put_Glu_GABA_T putat 97.3 0.025 5.5E-07 55.7 19.3 47 217-264 202-249 (474)
58 COG3949 Uncharacterized membra 97.2 0.022 4.8E-07 52.6 15.7 98 25-127 9-110 (349)
59 TIGR02119 panF sodium/pantothe 97.2 0.16 3.4E-06 50.1 23.1 146 13-170 36-186 (471)
60 COG0591 PutP Na+/proline sympo 97.1 0.16 3.5E-06 50.4 22.4 151 15-177 36-192 (493)
61 PF02133 Transp_cyt_pur: Perme 97.0 0.019 4.1E-07 55.9 14.9 102 21-131 18-119 (440)
62 PRK11017 codB cytosine permeas 96.9 0.11 2.3E-06 50.3 18.6 172 83-270 71-244 (404)
63 TIGR00813 sss transporter, SSS 96.9 0.049 1.1E-06 52.5 16.1 142 16-170 2-145 (407)
64 PRK09442 panF sodium/panthothe 96.8 0.59 1.3E-05 46.2 23.5 146 13-170 37-187 (483)
65 PRK12488 acetate permease; Pro 96.6 0.66 1.4E-05 46.7 21.9 142 15-170 65-209 (549)
66 TIGR02711 symport_actP cation/ 96.3 1.2 2.7E-05 44.7 22.4 142 15-170 65-209 (549)
67 PRK09395 actP acetate permease 96.3 0.96 2.1E-05 45.6 21.0 144 14-170 66-211 (551)
68 PF02554 CstA: Carbon starvati 96.2 0.11 2.4E-06 49.0 12.9 102 19-126 52-157 (376)
69 TIGR00835 agcS amino acid carr 96.1 0.12 2.7E-06 50.0 13.2 85 17-104 45-138 (425)
70 PF00474 SSF: Sodium:solute sy 96.0 0.23 5.1E-06 47.7 14.8 142 16-170 5-149 (406)
71 COG1953 FUI1 Cytosine/uracil/t 95.9 1.6 3.4E-05 43.0 19.7 192 82-283 102-320 (497)
72 TIGR03648 Na_symport_lg probab 95.0 4.6 9.9E-05 40.7 20.5 148 10-170 25-174 (552)
73 PRK15419 proline:sodium sympor 94.8 4.7 0.0001 40.1 19.9 148 11-170 34-189 (502)
74 TIGR00796 livcs branched-chain 94.1 1.1 2.4E-05 42.8 12.9 78 83-169 255-332 (378)
75 TIGR00796 livcs branched-chain 93.9 6.3 0.00014 37.8 19.0 72 28-106 4-77 (378)
76 PRK15015 carbon starvation pro 93.4 0.68 1.5E-05 46.8 10.3 100 19-124 83-186 (701)
77 COG4147 DhlC Predicted symport 92.8 10 0.00023 37.1 21.6 231 20-267 44-294 (529)
78 KOG1289 Amino acid transporter 92.8 10 0.00022 37.8 17.2 47 224-271 268-314 (550)
79 PF01235 Na_Ala_symp: Sodium:a 92.0 5.7 0.00012 38.5 14.2 167 11-189 11-187 (416)
80 TIGR02121 Na_Pro_sym sodium/pr 91.0 18 0.00038 35.8 20.8 144 16-170 35-185 (487)
81 PRK10484 putative transporter; 90.2 21 0.00047 35.6 23.1 97 10-110 31-128 (523)
82 COG1966 CstA Carbon starvation 90.0 1.1 2.3E-05 44.5 7.2 102 18-125 51-156 (575)
83 PF05525 Branch_AA_trans: Bran 87.5 6.3 0.00014 38.3 10.7 61 84-151 262-322 (427)
84 COG0733 Na+-dependent transpor 86.6 33 0.00072 33.4 17.6 109 18-132 8-120 (439)
85 PF01566 Nramp: Natural resist 85.6 33 0.00071 32.4 21.9 88 71-170 33-122 (358)
86 COG1115 AlsT Na+/alanine sympo 84.3 17 0.00036 35.4 11.7 160 14-187 58-229 (452)
87 KOG1288 Amino acid transporter 84.2 2.5 5.3E-05 43.1 6.1 33 230-263 316-348 (945)
88 COG1114 BrnQ Branched-chain am 77.1 37 0.00081 32.8 11.2 76 85-169 265-340 (431)
89 PRK15433 branched-chain amino 71.8 45 0.00097 32.7 10.6 64 85-157 267-330 (439)
90 TIGR00909 2A0306 amino acid tr 66.7 1.2E+02 0.0027 29.0 13.8 46 84-129 265-310 (429)
91 KOG2083 Na+/K+ symporter [Inor 61.0 55 0.0012 33.2 8.9 108 19-131 30-143 (643)
92 TIGR01197 nramp NRAMP (natural 60.0 1.7E+02 0.0036 28.2 15.8 44 84-127 65-108 (390)
93 KOG1287 Amino acid transporter 59.3 1.6E+02 0.0035 29.2 11.7 45 85-130 275-319 (479)
94 PF13520 AA_permease_2: Amino 53.4 2.1E+02 0.0045 27.3 13.4 46 85-130 260-305 (426)
95 KOG2349 Na+:iodide/myo-inosito 52.2 1.5E+02 0.0034 30.1 10.5 87 16-110 44-135 (585)
96 KOG3660 Sodium-neurotransmitte 48.7 74 0.0016 32.7 7.8 105 20-132 39-147 (629)
97 PF02028 BCCT: BCCT family tra 48.3 2.9E+02 0.0063 27.5 11.9 95 85-182 164-260 (485)
98 TIGR00327 secE_euk_arch protei 46.0 37 0.00079 23.5 3.6 31 234-268 20-50 (61)
99 PF00209 SNF: Sodium:neurotran 45.4 3.2E+02 0.007 27.2 14.9 101 22-130 8-112 (523)
100 PRK09400 secE preprotein trans 45.2 38 0.00082 23.4 3.6 30 234-267 24-53 (61)
101 TIGR03810 arg_ornith_anti argi 44.0 3.2E+02 0.0069 26.7 13.0 47 84-130 265-311 (468)
102 PRK00701 manganese transport p 43.1 3.3E+02 0.0072 26.6 20.6 44 84-127 95-138 (439)
103 COG1914 MntH Mn2+ and Fe2+ tra 41.9 3.4E+02 0.0074 26.4 20.0 105 19-128 17-122 (416)
104 PRK09950 putative transporter; 39.9 4E+02 0.0087 26.7 12.0 51 80-130 164-218 (506)
105 PRK13183 psbN photosystem II r 33.3 38 0.00081 21.9 1.9 30 244-273 6-35 (46)
106 cd08765 Cyt_b561_CYBRD1 Verteb 33.2 2.6E+02 0.0056 23.1 7.5 68 240-309 44-111 (153)
107 PTZ00478 Sec superfamily; Prov 32.5 71 0.0015 23.4 3.5 32 232-267 35-66 (81)
108 cd08764 Cyt_b561_CG1275_like N 31.7 2E+02 0.0043 25.3 6.9 70 240-309 54-123 (214)
109 PRK11357 frlA putative fructos 31.0 4.9E+02 0.011 25.1 16.1 45 84-128 265-311 (445)
110 PF01235 Na_Ala_symp: Sodium:a 30.7 4.9E+02 0.011 25.4 10.0 81 48-128 254-338 (416)
111 TIGR00905 2A0302 transporter, 30.6 5.2E+02 0.011 25.2 14.9 45 85-129 270-314 (473)
112 COG2443 Sss1 Preprotein transl 30.4 84 0.0018 22.0 3.4 31 234-268 25-55 (65)
113 PRK11387 S-methylmethionine tr 29.4 5.4E+02 0.012 25.0 13.1 47 83-129 275-321 (471)
114 cd08763 Cyt_b561_CYB561 Verteb 28.5 2.7E+02 0.006 22.7 6.8 68 240-309 37-104 (143)
115 cd08766 Cyt_b561_ACYB-1_like P 27.2 3.5E+02 0.0075 22.1 7.3 69 240-310 37-105 (144)
116 CHL00020 psbN photosystem II p 26.2 40 0.00086 21.5 1.1 29 245-273 4-32 (43)
117 PHA02764 hypothetical protein; 25.9 1.5E+02 0.0034 27.8 5.3 84 19-108 14-102 (399)
118 PF15562 Imm10: Immunity prote 24.8 1.5E+02 0.0032 20.3 4.0 24 91-114 35-58 (61)
119 KOG2466 Uridine permease/thiam 24.6 7.3E+02 0.016 24.9 14.8 249 20-280 57-331 (572)
120 TIGR00842 bcct choline/carniti 23.5 7.2E+02 0.016 24.5 11.7 51 80-130 117-171 (453)
121 PF02468 PsbN: Photosystem II 23.2 57 0.0012 20.8 1.5 27 247-273 6-32 (43)
122 PRK10644 arginine:agmatin anti 22.9 6.9E+02 0.015 24.0 12.3 46 83-128 260-305 (445)
123 PF04835 Pox_A9: A9 protein co 20.7 2.5E+02 0.0054 18.8 4.1 33 240-273 20-52 (54)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=393.58 Aligned_cols=300 Identities=33% Similarity=0.536 Sum_probs=268.0
Q ss_pred ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh----hcCcccccHHH
Q 020588 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYRD 87 (324)
Q Consensus 12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~----~~~~~~~sy~~ 87 (324)
+..++|++||+++++|.++.++|+|+|+|||| +++.||+.|+++++..++++.||..+|.+|.+ ..++|+.+|.|
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d 109 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD 109 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence 34457889999999999999999999999999 99999999999999999999999999999977 35667788999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (324)
Q Consensus 88 l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~ 167 (324)
+++++||+++++++...+.+.++|.|+.|++..+|+++.+++....++...+.+.|+++++.++ +|++++||+++++++
T Consensus 110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~-~~~s~lp~~~~l~~~ 188 (437)
T KOG1303|consen 110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIV-LPLSQLPNFHSLSYL 188 (437)
T ss_pred HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHH-HHHHHCCCcchhHHH
Confidence 9999999999999999999999999999999999999999988664332455788999999987 799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCccCCC--CcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588 168 LGVSTVLSTIYIVIAIWLSVRDGLKNPA--RDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK 244 (324)
Q Consensus 168 S~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~ 244 (324)
|..++++++.++++.++.+..++...+. .++...+ ... ..++++|+++|+|+ |+++||||++||+| ++|+|
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~--~~~--~~f~a~g~iaFaf~gH~v~peIq~tMk~p--~~f~~ 262 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLG--TIP--TVFTALGIIAFAYGGHAVLPEIQHTMKSP--PKFKK 262 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCC--CCc--chhhhhhheeeeecCCeeeeehHhhcCCc--hhhhh
Confidence 9999999999999999988888754322 2222111 111 11899999999998 99999999999999 66999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhh
Q 020588 245 ALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSL 319 (324)
Q Consensus 245 ~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~ 319 (324)
++.+++.+++.+|+.+++.||++|||++++|++.|++++.|+.+.+|+++.+|++.+|++++.|.++..|++...
T Consensus 263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~ 337 (437)
T KOG1303|consen 263 ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGV 337 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhcc
Confidence 999999999999999999999999999999999999778999999999999999999999999999999998763
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.1e-45 Score=358.24 Aligned_cols=295 Identities=12% Similarity=0.104 Sum_probs=235.7
Q ss_pred cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY 98 (324)
Q Consensus 19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~ 98 (324)
++..+++||++|+++|+|+|+||+| ++++||++|++++++++.++.||++++.+++++.+. .||+|++++++||+++
T Consensus 60 gg~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 60 GGIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPWGS 136 (467)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHHHH
Confidence 4557899999999999999999999 999999999999999999999999999999876443 5999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCC---CCCCch-hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588 99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD---HTMKLP-YFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (324)
Q Consensus 99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~---~~~~~~-~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~ 174 (324)
+++++.+.+.++|+|++|+++.+|.++.+++....++ .....+ .+.+++.+++ +|++++|++++++++|.++.++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~-lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFM-LPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHh-hhcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875321111 011122 2333344443 7999999999999999998765
Q ss_pred HHHHHHHHhhhhhccCccC--CCCcCCCCCC---cc-hhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHH
Q 020588 175 STIYIVIAIWLSVRDGLKN--PARDYSIPGT---TA-TKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALY 247 (324)
Q Consensus 175 ~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~---~~-~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~ 247 (324)
.+.....+++.+..++.++ ++.+....+. +. ....+.+.++|+++|||. |.++|++++|||||+.+|+.++..
T Consensus 216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~ 295 (467)
T PTZ00206 216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST 295 (467)
T ss_pred HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence 4443333333333333221 0111100000 01 111357889999999998 999999999999998899999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhcCCCcccccccCcC-CchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588 248 FQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVS-GPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL 317 (324)
Q Consensus 248 ~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~ 317 (324)
.++.++.++|..+|++||++||+++++||+.|++ .++....++++++.+++++|||++++|+|+..++++
T Consensus 296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~ 366 (467)
T PTZ00206 296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVI 366 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 9999999999999999999999999999999994 456778889999999999999999999999876664
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-42 Score=324.04 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=239.3
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCcccccHHHHHHHH
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGKRHIRYRDLAGHI 92 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~----~~~~~~sy~~l~~~~ 92 (324)
+..|..++..|+.|.++|+|+|++|+| |+++||+.|.+..++++.+|+||++.+++|.+. .++...+|++.++.+
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 346899999999999999999999999 999999999999999999999999999999653 222335788877665
Q ss_pred ----------hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 93 ----------YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 93 ----------~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
+||++|.++++++.+.|+|.|++|+++.+++++++.+.. .....+.+.|+.+..... ++++++||+|
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~-lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPL-LLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHH-HHHHHHHhhH
Confidence 467889999999999999999999999999999998722 134577888887766665 7999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhh
Q 020588 163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVEN 241 (324)
Q Consensus 163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~ 241 (324)
.|+.+|.++.++.+.-..++....+.+..+ ..+.+ ...++.++...+|+.+|||. +.++.|++++||+| ++
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~--~~~~~----~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P--~~ 272 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLPP--TSDLP----AVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP--QK 272 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccCC--ccccc----cccchhhhHHHHHHHHHHhccceEEEehhhcccCh--hh
Confidence 999999999886654433333222222211 11111 12235567889999999996 99999999999999 88
Q ss_pred HH---HHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchh
Q 020588 242 MM---KALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSS 315 (324)
Q Consensus 242 ~~---~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~ 315 (324)
|+ +++..++.+++++|..+|++||++||+++++.|+.|+|+ +|+.+.+++++++++..+||++.+|..+-.|.
T Consensus 273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 99 999999999999999999999999999999999999996 99999999999999999999999998776665
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.5e-44 Score=345.37 Aligned_cols=298 Identities=21% Similarity=0.307 Sum_probs=248.8
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccccHHHHHHHHhC
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG--GKRHIRYRDLAGHIYG 94 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~--~~~~~sy~~l~~~~~G 94 (324)
+|+|++++++|++|+++|+|+|+||++ ++++||+.|++++++++.++.||.+++.|+++.. +++..+|+|++++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 478999999999999999999999999 9999999999999999999999999999997752 3456799999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~ 174 (324)
|++++++++++.+.++|.|++|++..+|.+..+.+.+.+ +...++..|.++.++++ +|++++|+++++++.|.++.++
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~~i~-~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-DLFISRYVWIIIFALIV-LPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccc-ccccccccccccccccc-ccccccchhhHHHHHhhhhhhc
Confidence 999999999999999999999999999999998776432 13456667776666655 7999999999999999998775
Q ss_pred HHHHHHHHhhhhhccCccCCCCcCCCCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh-hhHHHHHHHHHH
Q 020588 175 STIYIVIAIWLSVRDGLKNPARDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV-ENMMKALYFQFS 251 (324)
Q Consensus 175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~-~~~~~~~~~s~~ 251 (324)
.+....+.+......... ++.+.+... .+..++.+++.++|+++|||+ |..+|++++|||+|++ +|++++...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPG-EPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred cceeeeeecceeeeeecc-cccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 543212222211111111 111211111 123445678999999999998 9999999999999976 667799999999
Q ss_pred HHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588 252 VGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS 318 (324)
Q Consensus 252 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~ 318 (324)
+++++|..+|..||++||+++++|++.|++++++...++++++.++++.+||++.+|.++..+..+.
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 9999999999999999999999999999997778999999999999999999999999998888764
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.8e-37 Score=301.94 Aligned_cols=283 Identities=14% Similarity=0.176 Sum_probs=230.1
Q ss_pred ccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCccc-------ccHH
Q 020588 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGKRH-------IRYR 86 (324)
Q Consensus 18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~----~~~~~-------~sy~ 86 (324)
++|..++.+|++++.+|.|+|+||+| ++++||++|++.++++++++.||++++.+|+.+ .+++. .+|.
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 36777888999999999999999999 999999999999999999999999999987432 11111 2689
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHH
Q 020588 87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV 166 (324)
Q Consensus 87 ~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~ 166 (324)
|+++..+||+++.+..+...+.+++.|+.|++..++++..+ +...+.+.|++++++++ +|++++|++|++++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-------~~~~~~~~~~~i~~~v~-~~~~~i~sl~~l~~ 195 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-------NDNLDKRTWTYIFGACC-ATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-------CCCcCCCeEEeehHHHH-HHHHHccCHHHHHH
Confidence 99999999999999999999999999999999888777654 23467788888888776 68899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA 245 (324)
Q Consensus 167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~ 245 (324)
+|.++..+++....++++.+..++.. ++.+.+ .+.++...+.+.++++|+|+ |.++|++++||||| ++++++
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~-~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P--~~F~~~ 268 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQV-EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP--QKFKYI 268 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh--hcccch
Confidence 99998775554433333333333321 222221 12345567788889999997 99999999999999 789999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhcCCCccc--ccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588 246 LYFQFSVGVLPMFAVTFVGYWAYGNSSSS--YLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL 317 (324)
Q Consensus 246 ~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~ 317 (324)
...+...++..|+.+|+.||+.|||++++ +.++|++++. ..+++++++.+++..+||+++.|..+..|..+
T Consensus 269 ~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~ 341 (473)
T PLN03074 269 YLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAI 341 (473)
T ss_pred HHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 88999999999999999999999999764 5688898544 47899999999999999999999988776654
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-36 Score=285.88 Aligned_cols=299 Identities=17% Similarity=0.234 Sum_probs=240.6
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
.+++.|..++++|++|+++|+|++++|+| |++.|.+.|++++.++++++.++.+++.+|.++.+++ +|++++++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHH-HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcC
Confidence 35677899999999999999999999999 9999999999999999999999999999999877765 99999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-CCCC--CCch-h-hHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK-DDHT--MKLP-Y-FIAIAGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~-~~~~--~~~~-~-~~~i~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
+.++...++......+| |++|+++.+|.+..+.+.... ++.. +.++ . |.+....+ +.|++..|+++++++.|.
T Consensus 79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~-i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFI-ILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHH-HHHHHHHHhhhhHHHHHH
Confidence 99988888888888888 899999999999977766332 2211 2233 2 33433333 379999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588 170 VSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF 248 (324)
Q Consensus 170 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~ 248 (324)
++......++.+++...+......+...+..+ +...+++.+.++|+++|||. |....++++|||||+++++.++...
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~ 234 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLVP--NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccccC--CcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHH
Confidence 98776665555554443332211111111111 11122578999999999997 8667779999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchH------HHHHHHHHHHHHHHhhhhhhcccccccchhhhhhc
Q 020588 249 QFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVW------MKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLY 320 (324)
Q Consensus 249 s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~------~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~~ 320 (324)
+...+..+|..+|.+||++||+++++|++.++++.+. ..+.+|..+.++.+.++|+..+|+|...++++-=+
T Consensus 235 ~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~ 312 (411)
T KOG1305|consen 235 AIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPY 312 (411)
T ss_pred HHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhccc
Confidence 9999999999999999999999999999999974322 35899999999999999999999999877766433
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-31 Score=254.62 Aligned_cols=302 Identities=17% Similarity=0.176 Sum_probs=236.9
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
.+.+++.+..+++++++++++|+|+|++|++ ++..|++++++++++.+..+.++.+++.|+.++.++++.++.+++++.
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 3456677889999999999999999999999 999999999999999999999999999999887665435899999999
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~ 172 (324)
+||+++++.+++..+.++|.+.+|.+..+|.++..++.+...+ +.++..+.+++..+. .++++.++...++..|.+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-~~~r~~~~lif~~~~-~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-PLPRKLGSLIFALVL-AFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-CcchHHHHHHHHHHH-HHHHHhchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988743211 145555566666655 57888899999999998865
Q ss_pred HHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHH
Q 020588 173 VLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFS 251 (324)
Q Consensus 173 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~ 251 (324)
.....+++..... ..++ +++.....+......+..+..++|+++|||+ |+++|++++|||++++++.+|+..++..
T Consensus 160 ~~v~~~~~l~~~~-~~~~--~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~ 236 (415)
T COG0814 160 GKVIYLVLLVVYL-IPHW--NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSL 236 (415)
T ss_pred HHHHHHHHHHHHH-hccc--CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHH
Confidence 5444333222221 1111 1111101000002345568889999999999 9999999999999987779999999999
Q ss_pred HHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhcc
Q 020588 252 VGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYL 321 (324)
Q Consensus 252 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~~~ 321 (324)
+..++|..++..+|..+|+++.++++++.++++...+ ++.....+...++|...+|++.-..++++-|+
T Consensus 237 ~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~-~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 237 IALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLS-ALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHH-HHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999985444333 34444455557788888887777777766654
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-32 Score=244.17 Aligned_cols=277 Identities=15% Similarity=0.209 Sum_probs=229.0
Q ss_pred CccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcC------ccccc
Q 020588 11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGG------KRHIR 84 (324)
Q Consensus 11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~------~~~~s 84 (324)
+.++..+|.+.+|++.|+.|++-|.=+++||+| ....|| +++..++.++.+|.||+.+|++|..+.+ +.+.|
T Consensus 109 G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~A-vlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRds 186 (524)
T KOG4303|consen 109 GHGEASEKISALQAAWNVTNAIQGMFIVGLPIA-VLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDS 186 (524)
T ss_pred CCCCCCCccHHHHHhhhhhhhhheeeEecccee-eeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehh
Confidence 334555688999999999999999999999999 999998 6999999999999999999999966443 12368
Q ss_pred HHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcc
Q 020588 85 YRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA 163 (324)
Q Consensus 85 y~~l~~~~~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~ 163 (324)
|.++|+..++|+ |.+.+.+.+.+.++.+|+.|++..||.+..-+ |+.+.+++-|+++.+..+ +|..++|++|.
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~f-----P~~svd~~sWm~i~~a~L-Lpc~FLk~Lk~ 260 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCF-----PGLSVDKASWMMITSASL-LPCSFLKDLKI 260 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccC-----CCCCccccchhhhhhHHH-hhhHHHHHHHH
Confidence 999999999987 45889999999999999999999999998643 455678899999988887 79999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccCcc--CCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhh
Q 020588 164 LGVWLGVSTVLSTIYIVIAIWLSVRDGLK--NPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVE 240 (324)
Q Consensus 164 l~~~S~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~ 240 (324)
.+.+|.+.++.-++.-.+++..++..... ...++.++ +..+++..+|+++|+|. |..+|+++.+|++|+
T Consensus 261 VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps-- 332 (524)
T KOG4303|consen 261 VSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS-- 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChh--
Confidence 99999888777777666666655432211 11122221 23356678999999998 999999999999995
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhh
Q 020588 241 NMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304 (324)
Q Consensus 241 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl 304 (324)
+|...+.++=....++-.++|.+||++||+++++.|.+|++ ++.++.++|+++++..+.|||+
T Consensus 333 ~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~KALLSYPL 395 (524)
T KOG4303|consen 333 QFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVVKALLSYPL 395 (524)
T ss_pred HheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHHHHHHcCCc
Confidence 45555566666678888999999999999999999999999 5668999999999999999998
No 9
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.89 E-value=2.3e-21 Score=184.29 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=203.8
Q ss_pred ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
+.|||.+..++++.++++++|+|+|+||.+ .++.|+.++++++++++..+.||+.++.|+..+.+ +..++..++|+.+
T Consensus 4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-~g~~l~tma~~~L 81 (415)
T PRK09664 4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVD-LAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-VGSSFNTITKDLI 81 (415)
T ss_pred chhhccchhhhhHHhhhccHhHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHc
Confidence 445666888899999999999999999999 99999999999999999999999999999977654 3568999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH-
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST- 172 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~- 172 (324)
||+|+++..++.....++.+++|+.-.|+.+++.++... +.+++.+.-.++++.+. -...+.. .|..++.+-+=.
T Consensus 82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~~i~~~~~~llF~~~~-~~~v~~g-t~~vd~~nr~l~~ 157 (415)
T PRK09664 82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL--GYHANPRIVGICTAIFV-ASVLWIS-SLAASRITSLFLG 157 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH-HHHHHhc-hhHHHHHHHHHHH
Confidence 999999999999999999999999999999999876421 12333333233343332 1222322 345555544311
Q ss_pred HHHHHHHHHHhhhhhccCccCCC-CcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHH
Q 020588 173 VLSTIYIVIAIWLSVRDGLKNPA-RDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQF 250 (324)
Q Consensus 173 ~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~ 250 (324)
.+.+.+. ..........+.+. .+.+........+.....++|++.+||+ |+++|++.+.+++.. ++.+|++.++.
T Consensus 158 ~~ii~f~--~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~-~~~~kaIl~Gs 234 (415)
T PRK09664 158 LKIISFV--IVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK-DKLIKSVVFGS 234 (415)
T ss_pred HHHHHHH--HHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH-HHHHHHHHHHH
Confidence 1111111 11111111111000 0000000000012236778999999999 999999999987543 67889999999
Q ss_pred HHHHHHHHHH--hhHHh---------hhcCCCccccc---ccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhh
Q 020588 251 SVGVLPMFAV--TFVGY---------WAYGNSSSSYL---LNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSL 316 (324)
Q Consensus 251 ~~~~~~Y~~~--g~~gy---------~~fG~~~~~~i---l~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~ 316 (324)
.+..++|+.. ++.|- ..-|+++++-+ ..+. ++.+...+.+++..+++.+||-=.....++-..++
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999764 33331 22333333311 2232 36788889999999999999998888888888777
Q ss_pred hhh
Q 020588 317 LSL 319 (324)
Q Consensus 317 ~~~ 319 (324)
+.+
T Consensus 314 ~~~ 316 (415)
T PRK09664 314 FKI 316 (415)
T ss_pred hCC
Confidence 654
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.88 E-value=4.9e-21 Score=182.13 Aligned_cols=298 Identities=10% Similarity=0.072 Sum_probs=208.1
Q ss_pred CccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588 11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAG 90 (324)
Q Consensus 11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~ 90 (324)
....++++++..++++.++++.+|+|+|+||.+ .++.|++++++++++++..+.||+.++.|+..+.+ +..++.+++|
T Consensus 3 ~~~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-~g~~~~tma~ 80 (414)
T PRK10483 3 TLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-IGSSFDTITK 80 (414)
T ss_pred ccccccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHH
Confidence 345677889999999999999999999999999 99999999999999999999999999999976543 3468999999
Q ss_pred HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 91 ~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
+.+||+|+++..++.....++.+++|+.-.|+.+++.++.. +.+++.+.-.++++.+. -...+. ..|..++.+.+
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---~~~i~~~~~~llF~~~~-~~iv~~-gt~~vd~~n~~ 155 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---SLNVPARAAGFGFALLV-AFVVWL-STKAVSRMTAI 155 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---CCCCcHHHHHHHHHHHH-HHHHHh-hhhHHHHHHHH
Confidence 99999999999999999999999999999999999987652 12233333333444333 122232 23555555543
Q ss_pred HHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHH
Q 020588 171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQ 249 (324)
Q Consensus 171 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s 249 (324)
-....+ ...+..........+ ++.-.+....+...+.....++|++++||+ |+++|++++.+++.. +|.+|++.++
T Consensus 156 l~~~~i-~~f~~~~~~l~~~i~-~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~-~kir~~I~iG 232 (414)
T PRK10483 156 VLGAKV-ITFFLTFGSLLGHVQ-PATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP-KTIVKCLVYG 232 (414)
T ss_pred HHHHHH-HHHHHHHHHHHhhcC-HHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH-HHHHHHHHHH
Confidence 111111 111111111211111 000000000111223346789999999999 999999999988554 5899999999
Q ss_pred HHHHHHHHHHH--hhHHhhh---------cCCCcccccccCc---CCchHHHHHHHHHHHHHHHhhhhhhcccccccchh
Q 020588 250 FSVGVLPMFAV--TFVGYWA---------YGNSSSSYLLNNV---SGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSS 315 (324)
Q Consensus 250 ~~~~~~~Y~~~--g~~gy~~---------fG~~~~~~il~~~---~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~ 315 (324)
..+..++|+.. ++.|-.. -|++++ ..++.+ .++.++..+..++..+++.+||-=.....++-..+
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999884 3333211 222221 111222 23567778899999999999999888888888887
Q ss_pred hhhh
Q 020588 316 LLSL 319 (324)
Q Consensus 316 ~~~~ 319 (324)
++.+
T Consensus 312 ~~k~ 315 (414)
T PRK10483 312 LFGF 315 (414)
T ss_pred HhCC
Confidence 7654
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=5.3e-20 Score=175.84 Aligned_cols=292 Identities=15% Similarity=0.108 Sum_probs=202.9
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR 96 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~ 96 (324)
|+.+.+++++.+.++.+|+|+|+||.+ .+..|+.++++++++++..+.+|..++.|+..+.++ ..++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 456778889999999999999999999 999999999999999999999999999998765443 468999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (324)
Q Consensus 97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~ 176 (324)
|+++..+...+..++.+++|....++.+++.++.... .+.+.+.-..++.++. ....... -|...+.+..-....+
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~-~~iv~~g-~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIF-GGIVYFG-TKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998776431 2333333223333222 1111221 2334444332111111
Q ss_pred HHHHHHhhhh-hccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHH
Q 020588 177 IYIVIAIWLS-VRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGV 254 (324)
Q Consensus 177 ~~~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~ 254 (324)
..++.+... +.+...+ .... ......++...+.++|+..+||+ |+++|++.+.+++.. ||.+|++.++..+..
T Consensus 155 -~~~~~l~~~~~p~~~~~-~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-~k~~~ai~~Gs~i~l 229 (394)
T PF03222_consen 155 -ISFIILVVYLIPHWNPS-NLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-KKIRKAIIIGSLIPL 229 (394)
T ss_pred -HHHHHHHHHHhhhcCHH-Hhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH-HHHHHHHHHHHHHHH
Confidence 111111111 2221110 0000 00112345567889999999999 999999999998553 788999999999999
Q ss_pred HHHHHH--hhHHh---------hhcCCCccc--ccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhh
Q 020588 255 LPMFAV--TFVGY---------WAYGNSSSS--YLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSL 319 (324)
Q Consensus 255 ~~Y~~~--g~~gy---------~~fG~~~~~--~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~ 319 (324)
++|+.. .+.|- ..-+++..+ ..+.+..++.+...+++++-.+++.+||-=...-.++...+++.+
T Consensus 230 v~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 230 VMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999875 33331 111111111 233344446778888999999999999988888888877777654
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.85 E-value=8.4e-20 Score=174.16 Aligned_cols=286 Identities=13% Similarity=0.080 Sum_probs=201.4
Q ss_pred cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY 98 (324)
Q Consensus 19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~ 98 (324)
++..++.+.+.++.+|+|+|+||.+ ....|++++++++++++..+.||++++.|+..+.+ +..++.+++|+.+||+|+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-ADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhChHHH
Confidence 3677889999999999999999999 99999999999999999999999999999865433 346899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHH
Q 020588 99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST-VLSTI 177 (324)
Q Consensus 99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~-~~~~~ 177 (324)
++..++.....+..+.+|....|+.+++..+.+.. .+++.....+++.++. -...+. ..|...+...+=. .+.+.
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~~i~~~~~~l~F~~~~-~~iv~~-g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTG--ISMSPTAGVLLFTLVA-GGVVCV-GTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--CCCChHHHHHHHHHHH-HHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876542 2344444444444433 122222 2344444433211 11111
Q ss_pred HHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 020588 178 YIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLP 256 (324)
Q Consensus 178 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~ 256 (324)
+..... ....+...+ . +...+.+ ......++|++.+||+ |+++|++.+.+++.. ||.+|++.++..+..++
T Consensus 157 ~~~~~~-~l~p~~~~~-~----L~~~~~~-~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 157 LVVMLA-LMMPHIHKV-N----LLTLPLQ-QGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHH-HHHHhcCHH-H----HhcCCcc-ccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHHHHHH
Confidence 111111 111111110 0 1000111 1126789999999999 999999999987543 78999999999999999
Q ss_pred HHHHhhHHhhhcCCCc-----cc-----ccccCcC---CchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588 257 MFAVTFVGYWAYGNSS-----SS-----YLLNNVS---GPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS 318 (324)
Q Consensus 257 Y~~~g~~gy~~fG~~~-----~~-----~il~~~~---~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~ 318 (324)
|+..-......-+.+. ++ ++++.+. ++.|...++.++..+++.+||-=.....++-..+.+.
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9886444444433321 11 2333332 4678888999999999999999888888887777664
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.82 E-value=8.3e-19 Score=167.38 Aligned_cols=285 Identities=11% Similarity=0.037 Sum_probs=198.6
Q ss_pred hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHH
Q 020588 24 VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWG 103 (324)
Q Consensus 24 ~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~ 103 (324)
++..++++++|+|++++|.+ .++.|+.++++.+++.+.++.++..++.|+..+..+ ..++.+.+++++||++++++..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~-~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTS-TAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred ceEEeehhhHhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHH
Confidence 45677899999999999999 999999999999999999999999999998665432 3589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Q 020588 104 LQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAI 183 (324)
Q Consensus 104 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i 183 (324)
...+..+..+.+|.+..++.+..+++....+ +.+...+.+++..++ .++ ..+..|..++++.+.....+....+.+
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~-~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLF-GSF-VWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHH-HHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887643211 222232333333322 233 334567777777765443333222222
Q ss_pred hhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhh
Q 020588 184 WLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTF 262 (324)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~ 262 (324)
+....+...+ .. .+. ..+...+.+...+++...++|+ |.++|++.++++|| +||.+|+..++..+++++|+.+..
T Consensus 156 i~~~~~~~~~-~~-~~~-~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~ 231 (381)
T TIGR00837 156 SGLLPHVKGD-LL-LDV-ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQL 231 (381)
T ss_pred HHHHhhccHH-HH-hcC-ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221110 00 000 0001233467788999999999 88899999999866 589999999999999999998766
Q ss_pred HHhhhcCCCcc----------cc---cccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588 263 VGYWAYGNSSS----------SY---LLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS 318 (324)
Q Consensus 263 ~gy~~fG~~~~----------~~---il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~ 318 (324)
......+.+.- +. .+.+.-++.|...+..++..+++++|+.-.....++-..+.+.
T Consensus 232 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~ 300 (381)
T TIGR00837 232 ATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFK 300 (381)
T ss_pred HHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55544443211 11 1222112556778888999999999999887777665554443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.72 E-value=1.1e-15 Score=145.96 Aligned_cols=288 Identities=11% Similarity=0.041 Sum_probs=189.5
Q ss_pred hhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHH
Q 020588 25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (324)
Q Consensus 25 ~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~ 104 (324)
...+.++.+|+|+|+||-. ....|..+.+++++++..++.|+...+.|......++..++.+++++.+||+|+.+..++
T Consensus 25 ~l~l~GTAIGAGmLfLPI~-~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIR-AGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 4789999999999999999 999999999999999999999999999998655434456899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHHHHHHHHHh
Q 020588 105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS-TVLSTIYIVIAI 183 (324)
Q Consensus 105 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~-~~~~~~~~~i~i 183 (324)
..+..+..+.+|.....+.+++.+..+.+ ..+.++....+++..+. ....... -|.+.+++..= ......+....+
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~-~~~~~r~l~slifv~~l-~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLG-FAPLNRGFVALFLLLLM-AFVIWFG-KDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCccHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888776554431 11233333333333322 1222222 24444444321 111111111111
Q ss_pred hhhhccCccCCCCcCCC---CCCcc-hhhhhHHhhhhHHHHHhc-cCchhhhhcc----cc---Cch--hhhHHHHHHHH
Q 020588 184 WLSVRDGLKNPARDYSI---PGTTA-TKIFESIGACANLVFAFN-TGMLPEIQAT----IR---QPV--VENMMKALYFQ 249 (324)
Q Consensus 184 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~a~~i~~faf~-h~~~~~i~~~----m~---~ps--~~~~~~~~~~s 249 (324)
.. +.++..+.-.+.+. +.... ........++|++.|||+ |+.+|++... .+ +++ .+|.+|+..++
T Consensus 181 ~L-iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~g 259 (443)
T PRK13629 181 SL-IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRA 259 (443)
T ss_pred HH-HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 11 22221100000000 00000 111246778999999999 8999999888 43 223 48899999999
Q ss_pred HHHHHHHHHHHhhHHhhhcCCCc-------ccccccC----cCC---c-----hHHHHHHHHHHHHHHHhhhhhhccccc
Q 020588 250 FSVGVLPMFAVTFVGYWAYGNSS-------SSYLLNN----VSG---P-----VWMKAAANISAFLQSVIALHVLFFIFH 310 (324)
Q Consensus 250 ~~~~~~~Y~~~g~~gy~~fG~~~-------~~~il~~----~~~---~-----~~~~~~~~i~~~i~li~sypl~~~p~~ 310 (324)
..+..++|+..-+..-..-+++. +.+++.. +++ . .++..+..++..+++.+||--..+..+
T Consensus 260 s~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~ 339 (443)
T PRK13629 260 SMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTL 339 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887666555555432 2232332 332 1 567888888888999999987777777
Q ss_pred ccchhhh
Q 020588 311 IPTSSLL 317 (324)
Q Consensus 311 ~~~~~~~ 317 (324)
+-..-+.
T Consensus 340 E~l~gl~ 346 (443)
T PRK13629 340 EGLNGLI 346 (443)
T ss_pred HHHHHHH
Confidence 6665554
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.64 E-value=4.2e-14 Score=135.26 Aligned_cols=285 Identities=13% Similarity=0.046 Sum_probs=190.8
Q ss_pred hhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHH
Q 020588 25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (324)
Q Consensus 25 ~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~ 104 (324)
.+.+.++.+|+|+|.+|-. ..+.||++.++..++...++.++..++.|........+.++.|++++.|||+++.+..+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 6788999999999999999 999999999999888888888999999997443322245899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 020588 105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW 184 (324)
Q Consensus 105 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~ 184 (324)
.....+..+.+|....++.+......+...+. ..+ +......++++........+.+.+++.+-....+....+...
T Consensus 88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~--p~~-~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~ 164 (397)
T TIGR00814 88 YFFAIYPILLIYSVAITNDSASFLVNQLGTAP--PLR-GLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887765432221 122 222111111112222234566666655432211111111111
Q ss_pred hhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhh----ccccCch--hhhHHHHHHHHHHHHHHHH
Q 020588 185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQ----ATIRQPV--VENMMKALYFQFSVGVLPM 257 (324)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~----~~m~~ps--~~~~~~~~~~s~~~~~~~Y 257 (324)
..+.+...+ ... ..+.. ...+.+...+++...+||+ |+.+|++. ++.++|+ +||.+|+..++..+..++|
T Consensus 165 ~lip~~~~~-~L~-~~p~~-~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y 241 (397)
T TIGR00814 165 YLIPHWNGA-NLT-TFPSF-NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATV 241 (397)
T ss_pred HHHHHcCHH-HHh-cCCcc-cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 122222110 000 00000 1123567889999999998 89999996 3344233 4788999999999999999
Q ss_pred HHHhhHHhhhcCCCc-----ccc--ccc----CcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588 258 FAVTFVGYWAYGNSS-----SSY--LLN----NVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL 317 (324)
Q Consensus 258 ~~~g~~gy~~fG~~~-----~~~--il~----~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~ 317 (324)
+..-.......+.+. ++| ++. ..+ +.+...+..++..+++.+||--...-+++-.+.++
T Consensus 242 ~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 242 MFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 887666666665443 122 232 223 56777888888888999999888887777777665
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.13 E-value=2.3e-09 Score=101.58 Aligned_cols=238 Identities=16% Similarity=0.179 Sum_probs=142.0
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR 96 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~ 96 (324)
+|.|.+|..+.++++++|+|++.+|.. ..+.+--.+.+..++.+.........+.|..++..+ .+.-|..++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~-~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPAL-VSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE--KNFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHH-HHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhHH
Confidence 467888999999999999999999997 555333345566677788888888888887654433 26889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (324)
Q Consensus 97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~ 176 (324)
.+++.........+..+..-.-..++.++. ...++ +..|......+++......+.++..++++.+-....+
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKT----YLLPR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 988888776655554444333333333332 21122 2333322222211122223466777777665433222
Q ss_pred HH-HHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhh-hHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588 177 IY-IVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGAC-ANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG 253 (324)
Q Consensus 177 ~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~ 253 (324)
.. ..+.......+. +.+.-.+.. ..++.+...+. +...++|+ ...+..+..++||| |+.+|+...+..++
T Consensus 150 ~~~~~il~~~~~~~~--~~~~l~P~~---~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~--~~~~k~~~~~~~~~ 222 (359)
T TIGR00912 150 ILFILVLILLAPKLG--NIKNLLPVL---ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK--KKIKKSIIKAIIIG 222 (359)
T ss_pred HHHHHHHHHHhcccc--cHHHccCcc---ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh--hhhHHHHHHHHHHH
Confidence 21 111111111111 000001111 11223334333 36778886 45555666778887 78999999999999
Q ss_pred HHHHHHHhhHHhhhcCCCc
Q 020588 254 VLPMFAVTFVGYWAYGNSS 272 (324)
Q Consensus 254 ~~~Y~~~g~~gy~~fG~~~ 272 (324)
..+|..+.......+|.+.
T Consensus 223 ~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 223 VLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHHHHHHHHHHHheecHHH
Confidence 9999988887777887543
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.11 E-value=8.2e-09 Score=100.41 Aligned_cols=240 Identities=13% Similarity=-0.011 Sum_probs=134.7
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
++|+.+.++.....+++++|+|++.+|.. .++.|- .+++..++.+++.........|......+. -..-.-+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~-GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS-GGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CchHHHHHHHcC
Confidence 56788999999999999999999999998 888886 567777777777777777777764321111 123345678999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~ 174 (324)
|+..+++.....+.......++.+...+.+..++. ........+.+...++......-.+..|..+++..+....
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-----ATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99888888776555554444443333344433321 1111111222222211100111112233333333332221
Q ss_pred HHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588 175 STIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG 253 (324)
Q Consensus 175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~ 253 (324)
.+...++.++........+ ..+..........+.++..++....|+|. ......+-+|+|||+ |+.+|++..+..++
T Consensus 156 ~l~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iPrAi~~~~~~~ 233 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPS-LYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE-RNVPIAVLGGTLGA 233 (438)
T ss_pred HHHHHHHHHHHHHHHhCcc-cccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc-ccccHHHHHHHHHH
Confidence 1111111111111111110 11111100001112345667778899996 766777888999996 68999999999999
Q ss_pred HHHHHHHhhHH
Q 020588 254 VLPMFAVTFVG 264 (324)
Q Consensus 254 ~~~Y~~~g~~g 264 (324)
.++|++.....
T Consensus 234 ~~~Y~l~~~~~ 244 (438)
T PRK10655 234 AVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHH
Confidence 99998865443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.07 E-value=1.6e-08 Score=98.41 Aligned_cols=244 Identities=16% Similarity=0.060 Sum_probs=134.8
Q ss_pred ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
+++|+.+.++.....+++++|+|++.+|.. .++.|-. .++..++.++.+........|......+.- ..-+-+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~-~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G-G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPAN-LASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG-GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ChhHHHHH-H
Confidence 578889999999999999999999999999 8888853 555666666666666666777543221111 22223456 7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~ 173 (324)
||+..+.+.........-...++.+...+.+...+..+ +.+. ..+......+.++-..-.+..|..+.+..+..+
T Consensus 78 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~---~~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~ 152 (435)
T PRK10435 78 SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL---NDPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99888887776554333333344444445554432211 1111 111111111110111112233444444333222
Q ss_pred HHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHH
Q 020588 174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSV 252 (324)
Q Consensus 174 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~ 252 (324)
..+......++....+...+ ....+.....+.+..++..++....|+|. .......-+|+|||+ |+.+|+...+..+
T Consensus 153 ~~li~~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~-r~iPrAi~~~~~i 230 (435)
T PRK10435 153 LVLIPVVGTAIVGWHWFDAA-TYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK-RTVPLATMLGTGL 230 (435)
T ss_pred HHHHHHHHHHHHHHHHcCHH-hhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc-ccccHHHHHHHHH
Confidence 21111111111111111110 00001101112234567788889999996 666677788999995 6899999999999
Q ss_pred HHHHHHHHhhHHhhhc
Q 020588 253 GVLPMFAVTFVGYWAY 268 (324)
Q Consensus 253 ~~~~Y~~~g~~gy~~f 268 (324)
+.++|+..........
T Consensus 231 v~ilYil~~~~~~~~~ 246 (435)
T PRK10435 231 AGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999988766544333
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.01 E-value=4e-08 Score=96.63 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=138.0
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLG-WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G-~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
++|+.|.++..+..+++++|+|++.+|.. ..+.| -...++..++.+...........|......++.-..-+.+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~-~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 36778999999999999999999999998 65544 22234555666666667777777764322110112233568899
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~ 173 (324)
||+..+++.............++.....+.+..+++.+. ++ .....+......+......-.+..|..+++..+...
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~ 160 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SG--NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTI 160 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999998888877665555555565555555555543211 11 111112111111110111122345555555554333
Q ss_pred HHHHHHHHHhhhhh--ccCccCCCCcCCCCCCc--chhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588 174 LSTIYIVIAIWLSV--RDGLKNPARDYSIPGTT--ATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF 248 (324)
Q Consensus 174 ~~~~~~~i~i~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~ 248 (324)
..+...++.++..+ .+... ...+......+ ...+..+..++....|+|. .......-+|+|| +|+.+|++..
T Consensus 161 ~~l~~l~~~ii~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~--~r~iPrai~~ 237 (473)
T TIGR00905 161 AKLIPLFLFIIIGWFWFKLDL-FTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN--KSDVGKATVL 237 (473)
T ss_pred HHHHHHHHHHHHHHHHhCchh-cccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--cccchHHHHH
Confidence 22222212222121 11111 00010000000 1123456677888999996 6666677788888 4899999999
Q ss_pred HHHHHHHHHHHHhhHHh
Q 020588 249 QFSVGVLPMFAVTFVGY 265 (324)
Q Consensus 249 s~~~~~~~Y~~~g~~gy 265 (324)
+..++.++|++......
T Consensus 238 ~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 238 GTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988765533
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=99.00 E-value=4e-08 Score=95.23 Aligned_cols=240 Identities=12% Similarity=-0.016 Sum_probs=145.0
Q ss_pred ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~ 95 (324)
+|+.+.++..+..+++++|+|++.+|..+....|. .+++..++.+++.........|......+. -..-+-.++.+||
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~-Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA-GSPYTYAYEAMGE 79 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CcceeeHHHHhCc
Confidence 57789999999999999999999999763445554 345556666777777777788865422111 1223446678999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc--CCCCC----Cchh--hH-HHHHHHHHHHHhcCCCCcchHH
Q 020588 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK--DDHTM----KLPY--FI-AIAGFVCALFAIGIPNLSALGV 166 (324)
Q Consensus 96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~--~~~~~----~~~~--~~-~i~~~~~~l~l~~~~~l~~l~~ 166 (324)
+..+++.....+.....+..+....++.+..++..... ++... +... +. +.+..++ ..+ ..+..|..++
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l-~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFL-TYI-LYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHH-HHH-HHhCcHHHHH
Confidence 99988888877777666777777777777766543211 10000 0000 11 1111111 122 2334666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA 245 (324)
Q Consensus 167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~ 245 (324)
++.+.....+....+.++....+... ++.+. ..+....++..++....|+|. .......-+|+|||+ |+.+|+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~-r~ip~a 231 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFAS-NNYTP----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE-RDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcH-HhcCC----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc-ccccHH
Confidence 66664443332222222222222111 11110 111233456777888999995 666667888999995 688999
Q ss_pred HHHHHHHHHHHHHHHhhHHh
Q 020588 246 LYFQFSVGVLPMFAVTFVGY 265 (324)
Q Consensus 246 ~~~s~~~~~~~Y~~~g~~gy 265 (324)
...+..++.++|+.......
T Consensus 232 i~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988765443
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.97 E-value=7.8e-08 Score=93.82 Aligned_cols=241 Identities=13% Similarity=0.045 Sum_probs=131.4
Q ss_pred ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
+++|+.+.++.....+++++|+|++.+|.. ..+.|. ..++..++.++........+.|......+.--.|.= +++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~-~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~-~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY-ARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH-HHHHc
Confidence 466788999999999999999999999998 777774 344555555666666666677764321111112322 78889
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~ 173 (324)
||+..+++.....+.......+......+....+++.. ............++..+-..-....|..+++..+...
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99988887776665443333333333333333332110 0011111111111110111111233455555444322
Q ss_pred HHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHH
Q 020588 174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSV 252 (324)
Q Consensus 174 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~ 252 (324)
..+....+.+...+.....+ .........+...+..+..++....|+|. .......-+|+|||+ |+.+|++..+..+
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~iPrai~~s~~i 234 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIGGVLI 234 (445)
T ss_pred HHHHHHHHHHHHHHHHhCch-hccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc-cchhHHHHHHHHH
Confidence 22211111111111111110 00000000111223345567778899996 666677888999996 5899999999999
Q ss_pred HHHHHHHHhhHH
Q 020588 253 GVLPMFAVTFVG 264 (324)
Q Consensus 253 ~~~~Y~~~g~~g 264 (324)
+.++|+++...-
T Consensus 235 ~~v~Y~l~~~~~ 246 (445)
T PRK10644 235 AAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHH
Confidence 999998876653
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.97 E-value=1.7e-07 Score=91.63 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=139.8
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-cCcccccHHHHHHHHh
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHIY 93 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~-~~~~~~sy~~l~~~~~ 93 (324)
.+|+.+.++..+..+++++|+|++.+|-.+.+..|- .+++..++.+++....+..+.|.... +.. -+.-+.+++.+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHh
Confidence 456779999999999999999999999443778885 46677777788888888888886432 221 24556788999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HHHhcCCCCcchHHHHHHHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGVST 172 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~l~~~~~l~~l~~~S~~~~ 172 (324)
||+..+++.....+.....+.+.....++.++.. . ++ . ..|.....++.. ..+.. ...|..+++.....
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~----~-~~--~--~~~~~~~~~~~~~~~~n~-~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYW----F-PD--I--PLWLFSLILTIVLTLTNL-YSVKSYGEFEFWFA 156 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-Cc--C--cHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHH
Confidence 9999988888877766655555555555555433 1 22 1 233322222211 11212 23344444443322
Q ss_pred HHHHHHHH--HHhhhh-hccCccC-CCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588 173 VLSTIYIV--IAIWLS-VRDGLKN-PARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM 243 (324)
Q Consensus 173 ~~~~~~~~--i~i~~~-~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~ 243 (324)
+.-+.... +++.+. ....... ..... +. .+..+..+.++..++....|+|. .......-+|+|||+ |+.+
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~-r~iP 235 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI-KSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh-hHHH
Confidence 21111111 111111 1111110 00000 00 01112233457788889999996 777777888999996 5899
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 020588 244 KALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 244 ~~~~~s~~~~~~~Y~~~g~~g 264 (324)
|+...+......+|+......
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888764443
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=98.97 E-value=3.1e-07 Score=90.02 Aligned_cols=235 Identities=15% Similarity=0.028 Sum_probs=135.1
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR 96 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~ 96 (324)
|+.+.++..+..+++++|+|+...|-.+.+..|- ..++..++.+++....+.-+.|......+. -+.-+.+++.+||+
T Consensus 21 r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~-Gg~~~y~~~~~g~~ 98 (458)
T PRK10249 21 RGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS-GSFAHFAYKYWGPF 98 (458)
T ss_pred ccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHhChH
Confidence 6678899999999999999999988774667675 466777778888888888888875432111 24556788999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (324)
Q Consensus 97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~ 176 (324)
..+++.....+.......+.....+..++.. . ++ .....+..++..+. ..+.. ...|..+++.....+.-+
T Consensus 99 ~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~----~-~~--~~~~~~~~~~~~l~-~~lN~-~gv~~~~~i~~~~~~ikv 169 (458)
T PRK10249 99 AGFLSGWNYWVMFVLVGMAELTAAGIYMQYW----F-PD--VPTWIWAAAFFIII-NAVNL-VNVRLYGETEFWFALIKV 169 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-Cc--CcHHHHHHHHHHHH-HHHHH-hcchhhhhHHHHHHHHHH
Confidence 9888888766655444444443333333322 1 11 12122222211111 12222 233333333322111111
Q ss_pred H--HHHHHhhhhh-ccCccCCCCcCC--CC--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588 177 I--YIVIAIWLSV-RDGLKNPARDYS--IP--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF 248 (324)
Q Consensus 177 ~--~~~i~i~~~~-~~~~~~~~~~~~--~~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~ 248 (324)
. ..++++.+.. ..+...+..+.+ .+ +..+..+.++..++....|+|. .......-+|+|||+ |+.+|+...
T Consensus 170 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~-k~iPrai~~ 248 (458)
T PRK10249 170 LAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE-KSIPKAVNQ 248 (458)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh-hHHHHHHHH
Confidence 1 1111111111 111110111110 00 1112334556788888999996 777777889999996 689999999
Q ss_pred HHHHHHHHHHHHhhH
Q 020588 249 QFSVGVLPMFAVTFV 263 (324)
Q Consensus 249 s~~~~~~~Y~~~g~~ 263 (324)
+.....++|+.....
T Consensus 249 ~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 249 VVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998899999775443
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.92 E-value=1.5e-07 Score=92.46 Aligned_cols=248 Identities=11% Similarity=0.033 Sum_probs=132.6
Q ss_pred cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR 96 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~ 96 (324)
|+.+.++.....+++++|+|++.+|..+.+..|....++..++.++..........|......+..-..-+-+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 56788889999999999999999998745566643344556667777777777777764321111001233488899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (324)
Q Consensus 97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~ 176 (324)
..+++.....+...-...++.....+.+...++.+. .+.+...+......+..+...-.+..|..++++.+..+.-+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki 157 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG---GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKL 157 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 988888776655444444554444444433322111 01111112111111110111112344555555544332222
Q ss_pred HHHHHHhhhhh--ccCcc-CCCCcCCCC-CC-cchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHH
Q 020588 177 IYIVIAIWLSV--RDGLK-NPARDYSIP-GT-TATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQF 250 (324)
Q Consensus 177 ~~~~i~i~~~~--~~~~~-~~~~~~~~~-~~-~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~ 250 (324)
...++.++..+ .+... .++...+.+ +. ....+..+..++....|+|. ......+-+|.||+ |+.+|++..+.
T Consensus 158 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~ 235 (468)
T TIGR03810 158 VPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR--SDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--ccchHHHHHHH
Confidence 21111222111 11110 000000000 00 01112345567788899995 54444555677764 89999999999
Q ss_pred HHHHHHHHHHhhHHhhhcC
Q 020588 251 SVGVLPMFAVTFVGYWAYG 269 (324)
Q Consensus 251 ~~~~~~Y~~~g~~gy~~fG 269 (324)
..+..+|+.+.+..+...+
T Consensus 236 ~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999988776554443
No 25
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.90 E-value=4e-07 Score=89.58 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=139.7
Q ss_pred ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~ 95 (324)
+|+.+.++..+..++.++|+|++..|-.+.+..|-...++..++.+.+......-+.|......+..-.|...+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 36778888899999999999999887664777774333556667777777777778886543221122577788999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 020588 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS 175 (324)
Q Consensus 96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~ 175 (324)
+..+++.....+.....+.+.....+..+... . + +.....|..+..+++ ..+ -.+..|..++++......-
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~~-~~i-n~~gv~~~~~~~~~~~~~k 151 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYW----T-D--KVNPAVWIAIFYVFI-VII-NLFGVKGYGEAEFWFSSIK 151 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-C--CCCHHHHHHHHHHHH-HHH-HHhcchHHHHHHHHHHHHH
Confidence 99988888877766655555555555544321 1 1 122233332222211 122 2233455555544322111
Q ss_pred HHHH--HHHhhhh-hccCccCCC-CcC----CCCCCcc----hhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhH
Q 020588 176 TIYI--VIAIWLS-VRDGLKNPA-RDY----SIPGTTA----TKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENM 242 (324)
Q Consensus 176 ~~~~--~i~i~~~-~~~~~~~~~-~~~----~~~~~~~----~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~ 242 (324)
+... ++++.+. ......+++ ... +..+.++ ..+.++..++....|+|. .......-+|+|||+ |+.
T Consensus 152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r~i 230 (478)
T TIGR00913 152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR-KSI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh-hHH
Confidence 1111 1111111 111111100 000 0001111 124556778888899996 777777889999996 689
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020588 243 MKALYFQFSVGVLPMFAVTF 262 (324)
Q Consensus 243 ~~~~~~s~~~~~~~Y~~~g~ 262 (324)
+|++..+...+.++|++...
T Consensus 231 Prai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 231 PRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 26
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.88 E-value=4e-07 Score=91.27 Aligned_cols=244 Identities=9% Similarity=0.011 Sum_probs=142.4
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhh-hccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcccccHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVM-VPLGWIAGVVGLIIATIVSLNANALIAKLHEF---GGKRHIRYRDL 88 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~-~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~---~~~~~~sy~~l 88 (324)
.+-+|+.+.++....-++.++|+|+..+|-.+. ...|-. .++..++.++.+...+....|.... .|. ..+|
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y--- 98 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLY--- 98 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceee---
Confidence 345678899999999999999999999996412 346743 4555666777777777777776432 222 2334
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hccC----C-CCCCchhhHHHHHHHHHHHHhcCC
Q 020588 89 AGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL----FWKD----D-HTMKLPYFIAIAGFVCALFAIGIP 159 (324)
Q Consensus 89 ~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~----~~~~----~-~~~~~~~~~~i~~~~~~l~l~~~~ 159 (324)
+++.+|+...+++.....+.....+.+.....++.+..++.. +..+ + ...+.....+....++.+.....+
T Consensus 99 ~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 99 SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 345789998888888877666554544444455555554432 1000 0 011111111111111101122234
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCc--C--CCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccc
Q 020588 160 NLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD--Y--SIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATI 234 (324)
Q Consensus 160 ~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m 234 (324)
..|..++++.+.....+....+.++.+..+...+ +.. . +..+..+..+.+++.+.....|+|. .......-+|.
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~ 257 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV 257 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc
Confidence 5666666666544333332222233333222110 111 0 0001112234467788888999996 77777888999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588 235 RQPVVENMMKALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 235 ~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~ 263 (324)
|||+ |+++|++..+..+++++|+++...
T Consensus 258 knP~-r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 258 KNPQ-RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred cCcc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9995 689999999999999999887654
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.88 E-value=7.2e-07 Score=87.71 Aligned_cols=239 Identities=10% Similarity=0.033 Sum_probs=131.3
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
-+|+.+.++.....+++++|+|+...|-.+.+..|-...++..++.+++......-+.|......+. -.+-.-+++.+|
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a-GG~y~y~~~~~g 90 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET-GAFHVYAARYLG 90 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhcC
Confidence 4667899999999999999999998887745677743346667777778888888888864421111 134456778899
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~ 174 (324)
|+..+++.....+.....+..-....+..++. +. ++ .....+.+++.+++ ..+.. +..|..++.+......
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~-p~--~~~~~~~~~~~~~~-~~in~-~gvk~~~~~~~~~~~~ 161 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQY----WF-PQ--VPVWPWCLLFCALI-FGLNV-VSTRFFAEGEFWFSLI 161 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-Cc--CcHHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHHHH
Confidence 99888777776655544433333222222221 11 21 11112222221211 12212 2233333333221111
Q ss_pred HHHHHHHHhhhh---hccC--c--cCC--CCc-CCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588 175 STIYIVIAIWLS---VRDG--L--KNP--ARD-YSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM 243 (324)
Q Consensus 175 ~~~~~~i~i~~~---~~~~--~--~~~--~~~-~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~ 243 (324)
-+...++.++.. .... . .++ ..+ .+..+..+....++..++....|+|. .......-+|+|||+ |+++
T Consensus 162 ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~iP 240 (471)
T PRK11387 162 KVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA-KVIP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh-hHHH
Confidence 111111111111 1000 0 000 000 01011111222356667777899996 777777888999996 6899
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 020588 244 KALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 244 ~~~~~s~~~~~~~Y~~~g~~g 264 (324)
|++..+.....++|+......
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998899998876543
No 28
>PRK11021 putative transporter; Provisional
Probab=98.88 E-value=2.5e-07 Score=89.26 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=130.7
Q ss_pred ceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcch
Q 020588 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYA 99 (324)
Q Consensus 20 s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~ 99 (324)
+++++....+++++|+|++.+|-.+.+..|- ..++..++.++..........|...+..+. -..-.-+++.+||+..+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a-GG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA-GGPAHFVGMAFGPRLGR 79 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHhHHHHhCchhHH
Confidence 5678888899999999999999885666673 567777777888888888888865432121 13344677899999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Q 020588 100 LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYI 179 (324)
Q Consensus 100 ~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~ 179 (324)
+..............+......+.+..+ +. .+ +. ..+.........+...-.+..|..+++..+..+.. .
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~---~ 149 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQAL---FG-WS-SW--QLLLAELLTLALLWLLNLRGASSSANLQTVIALLI---V 149 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH---cC-CC-Cc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---H
Confidence 8777665433222222222233333322 11 11 11 11221111111111112233444444444322111 1
Q ss_pred HHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHH
Q 020588 180 VIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258 (324)
Q Consensus 180 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~ 258 (324)
.+... ....+..+ ..+.+.++....++.++..++....|+|. .......-+|+|||+ |+++|+...+..++.++|+
T Consensus 150 ~i~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-k~iPrAi~~~~~~~~~lYi 226 (410)
T PRK11021 150 ALVVA-IWWAGDIK-PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE-RDFPRALMIGLLLAGLVYW 226 (410)
T ss_pred HHHHH-HHHHcCCc-hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc-ccccHHHHHHHHHHHHHHH
Confidence 11111 11111111 11111111112244567788889999996 777778889999996 6899999999999999998
Q ss_pred HHhhH
Q 020588 259 AVTFV 263 (324)
Q Consensus 259 ~~g~~ 263 (324)
+....
T Consensus 227 l~~~~ 231 (410)
T PRK11021 227 ACTVV 231 (410)
T ss_pred HHHHH
Confidence 87654
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.86 E-value=4.6e-07 Score=89.02 Aligned_cols=240 Identities=11% Similarity=0.026 Sum_probs=136.1
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
.+.+|+.+.++.....+++++|+|++-.|-.+.++.|. ..++..++++.+......-+.|.....+. ..++.+.+++.
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~ 93 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL 93 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 33556789999999999999999999987754888886 45666667777777777767776432222 23566789999
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~ 172 (324)
+||...+++.....+...-...+.....+..++.. . ++ .....+..++..++ ..+.. ...|..+++..+..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~----~-p~--~~~~~~~~~~~~~~-~~iN~-~g~~~~~~i~~~~~ 164 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFW----F-PD--LSDWVASLAVVLLL-LSLNL-ATVKMFGEMEFWFA 164 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CC--CcHHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHH
Confidence 99999998888877665433334444444333322 2 22 12222212111111 12212 22344444443322
Q ss_pred HHHHHHHHHHhhhhh--c-cCccCCC-C--cC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhh
Q 020588 173 VLSTIYIVIAIWLSV--R-DGLKNPA-R--DY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVEN 241 (324)
Q Consensus 173 ~~~~~~~~i~i~~~~--~-~~~~~~~-~--~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~ 241 (324)
..-+....+.++.++ . .+...++ . .. +. .+..+..+.++..++....|+|. .......-+|+|||+ |+
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r~ 243 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE-KS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh-hH
Confidence 211111111111111 1 1110010 0 01 00 01112233457788889999996 777788889999995 68
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 020588 242 MMKALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 242 ~~~~~~~s~~~~~~~Y~~~g~~g 264 (324)
.+|+...+.....+.|++....-
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877777778887655443
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.82 E-value=9.3e-07 Score=86.58 Aligned_cols=241 Identities=9% Similarity=0.025 Sum_probs=135.4
Q ss_pred cCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHH
Q 020588 10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLA 89 (324)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~ 89 (324)
|.+.+.+|+.+.++..+..+++++|+|++.+|..+.+..|- .+++..++.+++....+.-+.|......+. -..-+.+
T Consensus 2 ~~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~-Gg~y~y~ 79 (457)
T PRK10580 2 ESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA-SSFSRYA 79 (457)
T ss_pred CCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHH
Confidence 34455667789999999999999999999998875666775 467777778888888888888875422111 1233467
Q ss_pred HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588 90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 90 ~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
++.+||...+++.....+.....+.......+..++. +. ++ .....+.+...+++ ..+ -++..|..+....
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~~~~~~~l~-~~l-n~~gv~~~~~~~~ 150 (457)
T PRK10580 80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGV----WF-PT--VPHWIWVLSVVLII-CAV-NLMSVKVFGELEF 150 (457)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-CC--CChHHHHHHHHHHH-HHH-HHccchhHHHHHH
Confidence 8899999988888876655443333333333333322 21 11 12222322222211 122 2223444444443
Q ss_pred HHHHHHHHHHHHH--hh--hhhccC--ccCC-CCcCCCC--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh
Q 020588 170 VSTVLSTIYIVIA--IW--LSVRDG--LKNP-ARDYSIP--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV 239 (324)
Q Consensus 170 ~~~~~~~~~~~i~--i~--~~~~~~--~~~~-~~~~~~~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~ 239 (324)
...+.-+....+. .. +..... ..++ +.+.... +..+..+.++..++....|+|. .......-+|+|||+
T Consensus 151 ~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~- 229 (457)
T PRK10580 151 WFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE- 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-
Confidence 2211111111111 11 111110 0011 0110010 1112233456778888999996 777777889999995
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTF 262 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~ 262 (324)
|+.+|+...+.....++|+....
T Consensus 230 k~iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 230 KSIPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999988877777788866543
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.81 E-value=6.3e-07 Score=94.58 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=141.9
Q ss_pred ccccceeehhhhh-hhccccccc-cchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-cCcccccHHHHHHHH
Q 020588 16 EMLDSWFQVGFVL-TTGINSAYV-LGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHI 92 (324)
Q Consensus 16 ~~~~s~~~~~~~l-~~~~iG~Gi-L~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~-~~~~~~sy~~l~~~~ 92 (324)
.++.+++++++.- +.+++|+|+ +.++|. ..++|...+++..+++++++..|..-+.+.... .-+.--.|. ..+++
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~V-vg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~-yisra 152 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWI-VGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYY-LISRS 152 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH-HHHHH
Confidence 4567888888877 999999996 556665 889998778888999999999999999887542 101111233 45678
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC--CCCC-CchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKD--DHTM-KLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~--~~~~-~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
|||.....+.......+...+..|.+..++.+..++...... .... ..+.+..++.+++ ..+.+ ...|..+++..
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll-~~In~-~Gvk~~ak~q~ 230 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVL-LGISF-AGMEWENKAQV 230 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHH-HHHHH-hhHHHHHHHHH
Confidence 999888888888777777778888888888888776432100 0011 1122222111111 12211 22333333333
Q ss_pred HHHHHHHHHHHHHhhhh-hccCccCCCC----------cCCC-CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588 170 VSTVLSTIYIVIAIWLS-VRDGLKNPAR----------DYSI-PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQ 236 (324)
Q Consensus 170 ~~~~~~~~~~~i~i~~~-~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ 236 (324)
+..+..+. .++.+++. +......+.. ..+. ++. .....++...++++..||. ......+-.|+|+
T Consensus 231 vl~vi~ll-~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~-~~~~~~f~~~~ai~F~A~tGi~agan~sgElKn 308 (953)
T TIGR00930 231 LFLVIVLL-SILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGI-PGPEGGFFSLFGIFFPSVTGILAGANISGDLKD 308 (953)
T ss_pred HHHHHHHH-HHHHHHheeeecCCCCCccceeeccchhhhhccCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 32211111 11111111 1111000000 0000 000 0111125666787888885 5555667789999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588 237 PVVENMMKALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~ 263 (324)
|+ |+.++++..+..+++++|+++.+.
T Consensus 309 P~-r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 309 PQ-KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 96 689999999999999999998753
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.81 E-value=6.4e-07 Score=87.74 Aligned_cols=237 Identities=12% Similarity=0.036 Sum_probs=137.1
Q ss_pred ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH 91 (324)
Q Consensus 12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~ 91 (324)
|.+.+|+.+.++..+.-+++++|+|++..|-.+.+..|- ..++..++.+++....+.-+.|........ -++-+-+++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a-Gg~y~~~~~ 84 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA-GSFSHFAYK 84 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 334567889999999999999999999999885667774 456666777777777777777764321111 134455777
Q ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 020588 92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS 171 (324)
Q Consensus 92 ~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~ 171 (324)
.+||...+++.....+.....+.+.....++.++.. . ++ .....+..++..++ ..+... ..|..+.+....
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~----~-p~--~~~~~~~~i~~~~~-~~lN~~-gv~~~~~~~~~~ 155 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW----Y-PE--IPTWVSAAVFFVVI-NAINLT-NVKVFGEMEFWF 155 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-Cc--CcHHHHHHHHHHHH-HHHHHH-hHHHHHHHHHHH
Confidence 899999999998888777766666665555555432 1 21 12222222221111 122111 233444444332
Q ss_pred HHHHHHHHHHHhhhh---hccCccCCCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588 172 TVLSTIYIVIAIWLS---VRDGLKNPARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM 243 (324)
Q Consensus 172 ~~~~~~~~~i~i~~~---~~~~~~~~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~ 243 (324)
.+.-+...++.+++. +..+...++... +. .+..+..+.++..+++...|+|. .......-+|+|||+ |+.+
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~-r~iP 234 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE-QSIP 234 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh-hHHH
Confidence 222221111111111 111111111111 10 11112223355667778899996 677777888999996 6899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020588 244 KALYFQFSVGVLPMFAV 260 (324)
Q Consensus 244 ~~~~~s~~~~~~~Y~~~ 260 (324)
|+...+.....+.|+..
T Consensus 235 rAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 235 KATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99987777777777654
No 33
>PRK15049 L-asparagine permease; Provisional
Probab=98.78 E-value=2e-06 Score=85.21 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=129.0
Q ss_pred ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~ 95 (324)
+|+.+.++..+.-+++++|+|+...|..+.+..|- .+++..++.+++....+.-+.|......+. -+.-+-+++.+||
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~a-Gg~y~y~~~~~G~ 104 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSS-GSFVSYAREFLGE 104 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHhCc
Confidence 34567888888999999999999888854777785 466777777888888888888864422111 2345567889999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 020588 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS 175 (324)
Q Consensus 96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~ 175 (324)
+..+++.....+........-....+..+. ++..-... ..|....++.++....-+...|....+.....+.-
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-----~~~~~~~~--~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~ik 177 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMH-----YWGAFGGV--PQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIK 177 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887777665543322222222222221 11110111 23332222221111111112333333333222111
Q ss_pred HHHHHH--Hhhhh-hccCccCCCC--cCC-C---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588 176 TIYIVI--AIWLS-VRDGLKNPAR--DYS-I---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA 245 (324)
Q Consensus 176 ~~~~~i--~i~~~-~~~~~~~~~~--~~~-~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~ 245 (324)
+...+. ++.+. ...+...++. ... . .+..+..+.+.+.++....|+|. .......-+|+|||+ |+.+|+
T Consensus 178 i~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~-r~iPrA 256 (499)
T PRK15049 178 VLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ-TMVPKA 256 (499)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh-hHHHHH
Confidence 111111 11111 1111110000 000 0 01112233345555667899996 777777888999996 589999
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 020588 246 LYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 246 ~~~s~~~~~~~Y~~~g~~g 264 (324)
+..++....++|+.....-
T Consensus 257 i~~~~~~i~~~yi~~~~~~ 275 (499)
T PRK15049 257 INSVIWRIGLFYVGSVVLL 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888888888765543
No 34
>PRK10836 lysine transporter; Provisional
Probab=98.78 E-value=3.6e-06 Score=83.20 Aligned_cols=248 Identities=11% Similarity=0.069 Sum_probs=132.7
Q ss_pred eeeecCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccH
Q 020588 6 YVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRY 85 (324)
Q Consensus 6 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy 85 (324)
|++-.++++.+|+.+.++..+..+++++|+|++.+|-.+.++.|-...++..+++++++...+.-+.|......+. -..
T Consensus 4 ~~~~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s-Gg~ 82 (489)
T PRK10836 4 ETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS-GSF 82 (489)
T ss_pred ccccCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCH
Confidence 4555666667788999999999999999999999997547788864467777888888888888888864422111 133
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchH
Q 020588 86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG 165 (324)
Q Consensus 86 ~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~ 165 (324)
-.-+++.+||..++++......... .+.+.....++. +.+ .+.++ .....+..++.+++ ..+.. ...|..+
T Consensus 83 y~y~~~~~g~~~gf~~Gw~~~~~~~-~~~a~~~~a~~~---~~~-~~~~~--~~~~~~~~~~~~~~-~~lN~-~gv~~~~ 153 (489)
T PRK10836 83 ATYGQNYVEEGFGFALGWNYWYNWA-VTIAVDLVAAQL---VMS-WWFPD--TPGWIWSALFLGVI-FLLNY-ISVRGFG 153 (489)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHH---Hhh-hcCCC--CchHHHHHHHHHHH-HHHHH-Hcchhhh
Confidence 4456678888877777665444322 222221111111 111 11122 11111222111111 12222 1233333
Q ss_pred HHHHH---HHHHHH-HHHHHHhhh--hhccCccCCCC-cCCCCCCc-chhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588 166 VWLGV---STVLST-IYIVIAIWL--SVRDGLKNPAR-DYSIPGTT-ATKIFESIGACANLVFAFN-TGMLPEIQATIRQ 236 (324)
Q Consensus 166 ~~S~~---~~~~~~-~~~~i~i~~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ 236 (324)
..... .-+..+ .+..+.+.. ...+..+..+. +.+..+.+ +..+...+.+.....|+|. .......-+|+||
T Consensus 154 ~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 233 (489)
T PRK10836 154 EAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 22221 111111 111111111 11111110000 11100001 1123334444555679996 6666777889999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 020588 237 PVVENMMKALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~g 264 (324)
|+ |+.+|++..+...+.++|+.....-
T Consensus 234 P~-r~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 234 PA-KNIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 6899999999999999998875543
No 35
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.77 E-value=6.7e-07 Score=83.48 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=137.0
Q ss_pred ccceeehhhhhhhccccccccchhhhhhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPL---GWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~---G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
|.|..|...-+..+.+|+|++.+|.. ..+. ||+. .++.+.......++..+..++..+ .+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~-l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAI-LAEQAGDAWIS----VLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH----HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhC
Confidence 45778889999999999999999998 5444 5653 333444445555555555443222 378999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~ 174 (324)
|+.+++......+..+......+-..++.++.. .. + ++..|.+....+.+......+.++.+++.+.+....
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~---~l-p----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTY---LL-P----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-C----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999888888777666665555554444444432 11 1 233343332222212333345777777765543222
Q ss_pred HHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588 175 STIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG 253 (324)
Q Consensus 175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~ 253 (324)
.+....++......+. +.+.-.|.. ..++.+.+.+.-...+.|+ ...+.-+....|+| ++.+|....+....
T Consensus 146 ~~i~~~~i~~~~~~~~----~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~--~~~~k~~~~~~~~~ 218 (320)
T PF03845_consen 146 FLILLLLILLLSIPNI----DWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK--KKLKKSLLIAILIS 218 (320)
T ss_pred HHHHHHHHHHHhcccC----CHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHH
Confidence 2222112122222111 111111111 1233456666555666675 44444566677888 67788899999898
Q ss_pred HHHHHHHhhHHhhhcCCCc
Q 020588 254 VLPMFAVTFVGYWAYGNSS 272 (324)
Q Consensus 254 ~~~Y~~~g~~gy~~fG~~~ 272 (324)
..+|...-......||.+.
T Consensus 219 ~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 219 GLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHhcCHHH
Confidence 8888887777788888653
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.76 E-value=1.5e-06 Score=86.15 Aligned_cols=245 Identities=10% Similarity=-0.007 Sum_probs=129.9
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhhhccchh-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH 91 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i-~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~ 91 (324)
.+.+|+.+.++.....+++++|+|++..|..+....|-. ..++..++.+++.........|......+. -..-.-.++
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s-GG~y~~~~~ 116 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS-GGEYNYILE 116 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchhhhHHh
Confidence 445667899999988899999999999997635556632 122444556667777777777764321111 112233556
Q ss_pred HhCCCcchhHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchh-hHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588 92 IYGRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPY-FIAIAGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 92 ~~G~~g~~~v~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~-~~~i~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
.+||+..++....... ...+.+..+....++.+.. .+. ++....... ..+..+++.+.-..-....|..++++.
T Consensus 117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~-~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~ 192 (501)
T TIGR00911 117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVF-PDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQD 192 (501)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-CCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8999887766554332 1123333333434443311 111 111111111 111111111111111234455555555
Q ss_pred HHHHHHHHHHHHHhhhhhc--cCccCCCCc--CCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588 170 VSTVLSTIYIVIAIWLSVR--DGLKNPARD--YSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK 244 (324)
Q Consensus 170 ~~~~~~~~~~~i~i~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~ 244 (324)
+.....+...++.++.++. .....++.+ ....+. ..+..++..++....|+|. .......-+|+|||+ |+.+|
T Consensus 193 i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~-r~iPr 270 (501)
T TIGR00911 193 IFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT-ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY-RTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC-CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch-hhhHH
Confidence 4333222222222222221 111100111 111111 1223456778888999996 666777889999995 68999
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 020588 245 ALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 245 ~~~~s~~~~~~~Y~~~g~~g 264 (324)
+...+..++.++|++....-
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875443
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.74 E-value=9e-07 Score=86.25 Aligned_cols=239 Identities=11% Similarity=-0.031 Sum_probs=135.5
Q ss_pred ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH 91 (324)
Q Consensus 12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~ 91 (324)
+.+-+|+.+.++....-++.++|....+.+.+ .+..|+..-++..++.+++....+..+.|......+. -..-.-+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~-~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~-Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFG-LAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA-GGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhhccchhHhhH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 44566778888888888888888555666888 8899986444555556666666666777764322111 123345688
Q ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 020588 92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS 171 (324)
Q Consensus 92 ~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~ 171 (324)
.+||+..+++.....+.......++....++.+...++ + .....+.+++..+. ..+. .+..|..+++..+.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p-----~--~~~~~~~~~~~~~~-~~ln-~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP-----V--GPGWLAALVFYIVF-IGIN-ILGVGEAAKLEFVV 150 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c--CchhHHHHHHHHHH-HHHH-HHHHHHHHhHHHHH
Confidence 99999998888887777666666677777777655432 1 11111111111111 1121 12234444444332
Q ss_pred HHHHHHHHHHHhhhhhccCccCCCCc--C-CCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHH
Q 020588 172 TVLSTIYIVIAIWLSVRDGLKNPARD--Y-SIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALY 247 (324)
Q Consensus 172 ~~~~~~~~~i~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~ 247 (324)
.+..+....+.++....+....+-.. . +..+..+..+.+++.++....|+|. +......-+|+|||+ |+.+|++.
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~iprai~ 229 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK-RDIPRGLI 229 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccCHHHH
Confidence 22221111111111111110000000 0 0001112223456777788899996 777777888999996 58999999
Q ss_pred HHHHHHHHHHHHHhh
Q 020588 248 FQFSVGVLPMFAVTF 262 (324)
Q Consensus 248 ~s~~~~~~~Y~~~g~ 262 (324)
.+..++..+|+....
T Consensus 230 ~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 230 GAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888888876644
No 38
>PRK10746 putative transport protein YifK; Provisional
Probab=98.73 E-value=4.5e-06 Score=81.92 Aligned_cols=239 Identities=12% Similarity=-0.003 Sum_probs=138.1
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
.+-+|+.+.++..+.-+++++|+|++..|..+.+..|- ..++..++.+.+....+.-+.|......+ .-++.+-+++.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~~ 83 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHRY 83 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 34566789999999999999999999988775777885 35566667777777888888886432211 12566778999
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~ 172 (324)
+||+..+++.....+.....+.+.....+..++.. . ++ .....+..+...+. ..+.. ...|..+.+.....
T Consensus 84 ~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~----~-p~--~~~~~~~~~~~~~~-~~lN~-~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFW----F-PE--MAQWIPALIAVALV-ALANL-AAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----c-CC--CchHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHH
Confidence 99999888888777666555555554444444332 1 21 22222322222211 12211 12333333322211
Q ss_pred HHHH----HHHHHHhhhhhcc-CccCCCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhH
Q 020588 173 VLST----IYIVIAIWLSVRD-GLKNPARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENM 242 (324)
Q Consensus 173 ~~~~----~~~~i~i~~~~~~-~~~~~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~ 242 (324)
..-+ .+.++.+...... +...+.... +. .+..+..+.++..++....|+|. .......-+|+|||+ |++
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~-k~i 233 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ-VTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh-hHH
Confidence 1111 1111111111111 111010111 01 01112234567788899999996 777777888999996 699
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 020588 243 MKALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 243 ~~~~~~s~~~~~~~Y~~~g~~ 263 (324)
+|+...+.....++|+.....
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888775433
No 39
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.66 E-value=1.6e-06 Score=83.73 Aligned_cols=243 Identities=14% Similarity=0.077 Sum_probs=141.2
Q ss_pred Cccccccccceeehhhhhhhccccccccchhhhhhhccchh-HHHHHHHHHHHHHHHHHHHHHHHhh---hcCcccccHH
Q 020588 11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAKLHE---FGGKRHIRYR 86 (324)
Q Consensus 11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i-~g~i~li~~~~~~~yt~~lL~~~~~---~~~~~~~sy~ 86 (324)
+..+.+|+.+.+.+++.++++++|+|+..-|..+.+++|=+ .++++-+++++++.-....-.|.-- +.|. +|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~a 82 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYA 82 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chh
Confidence 44556788999999999999999999999999977777643 4666667788888777776666522 2333 344
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHH-HHHHHHHHHHHhh-HHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcch
Q 020588 87 DLAGHIYGRRAYALTWGLQYVNLF-MINTGYIILAGQA-LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSAL 164 (324)
Q Consensus 87 ~l~~~~~G~~g~~~v~~~~~~~~~-g~~i~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l 164 (324)
=+. ++|||.........-.+... ..+..+-+..++. ++..+. +++.....--+ .+.++ +.+....|..++
T Consensus 83 yi~-~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----~c~~p~~~~~l-la~~~-l~~lt~~n~~~V 154 (479)
T KOG1287|consen 83 YIS-EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----LCDVPRVASKL-LAAAL-LVLLTLINSFSV 154 (479)
T ss_pred hHH-HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----CCCCchHHHHH-HHHHH-HHHHHHHhhhhh
Confidence 444 46887665433333333333 3335566666665 444322 22222222222 22222 233344567777
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhhhccC---ccCCCCcCC-CCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588 165 GVWLGVSTVLSTI---YIVIAIWLSVRDG---LKNPARDYS-IPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQ 236 (324)
Q Consensus 165 ~~~S~~~~~~~~~---~~~i~i~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ 236 (324)
++.+.+-.+.+.. .+.++++.+++.. ..+ +.+.+ ..++. .+.-++..++-.-.|||. -+.+-.+.+|+||
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~-~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQ-NFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccc-cccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 7665553332322 2222222233321 111 11111 11211 122235566767788886 5666667789999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 237 PVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
|. |++++++.+|+.++++.|+++-+..+.+
T Consensus 233 P~-ktLP~Ai~isi~lvt~iYil~NvAy~~v 262 (479)
T KOG1287|consen 233 PR-RTLPRAILISIPLVTVIYVLVNVAYFTV 262 (479)
T ss_pred cc-ccchHHHHHhhHHHHHHHHHhHhheeEe
Confidence 96 7999999999999999999887654433
No 40
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.65 E-value=3.4e-06 Score=82.28 Aligned_cols=256 Identities=16% Similarity=0.068 Sum_probs=142.2
Q ss_pred ecCccccccccceee-hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHH
Q 020588 9 SSYFFHLEMLDSWFQ-VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRD 87 (324)
Q Consensus 9 ~~~~~~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~ 87 (324)
.+++.+.+|+.+.++ .....++.++|.|++.+|.. ....+ ....+..++.++..........|..... .+.-.+-+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~-~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~-p~~GG~y~ 80 (466)
T COG0531 4 SMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGS-AAGLA-PAAILAWLIAGIIILFLALSYAELSSAI-PSAGGAYA 80 (466)
T ss_pred cccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhh-HHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCeee
Confidence 345556666777777 66777888999999999988 66664 1122222334444444455555554321 11113455
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH-HHHHhcCCCCcchHH
Q 020588 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALGV 166 (324)
Q Consensus 88 l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~-~l~l~~~~~l~~l~~ 166 (324)
-+++.+||+..+++.....+.......+.....++.+..++.... ........+.++..++. ++...-.+..|..++
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~ 158 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASAK 158 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 678899998888888888887777777777777665555432100 00111111222111111 111222234455555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA 245 (324)
Q Consensus 167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~ 245 (324)
...+..+..+...++..+..+.+...++...................++....++|. .......-+|+|||+ |+.+|+
T Consensus 159 ~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~-r~ip~a 237 (466)
T COG0531 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK-RTIPRA 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc-ccccHH
Confidence 555443433333323222223322211100111000011122346677788899996 666777889999985 568999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588 246 LYFQFSVGVLPMFAVTFVGYWAYGN 270 (324)
Q Consensus 246 ~~~s~~~~~~~Y~~~g~~gy~~fG~ 270 (324)
+..+...+..+|......-....++
T Consensus 238 ii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 238 IILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999998887766555554
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.63 E-value=4.4e-06 Score=81.54 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=128.8
Q ss_pred ccccccceeehhhhhhhccccccccchhhhhhhccch-hHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcccccHHHHH
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGW-IAGVVGLIIATIVSLNANALIAKLHE---FGGKRHIRYRDLA 89 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~-i~g~i~li~~~~~~~yt~~lL~~~~~---~~~~~~~sy~~l~ 89 (324)
+-+|+.+.++.....++.++|+|++..|..+....|- ...++..++.++++...+....|... +.|. ...| .
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~ 80 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---L 80 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---H
Confidence 4567889999999999999999999999762344553 23455556667777777777777643 2332 2344 4
Q ss_pred HHHhCCCcchhHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHH
Q 020588 90 GHIYGRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL 168 (324)
Q Consensus 90 ~~~~G~~g~~~v~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S 168 (324)
++.+||...+++...... ........+....++.+... . +.... ....+....+..+-..-.+..|..+++.
T Consensus 81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~----~-~~~~~--~~~~~~~~~~~~~~~ln~~gv~~~~~v~ 153 (445)
T PRK11357 81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL----T-PIDPL--LGKFIAAGLIIAFMLLHLRSVEGGAAFQ 153 (445)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CCchH--HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 577999887776665432 22222333444444444321 1 11111 0111111111101111123344444554
Q ss_pred HHHHHHHHHHHHHHhhhhh--ccCcc-CCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588 169 GVSTVLSTIYIVIAIWLSV--RDGLK-NPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK 244 (324)
Q Consensus 169 ~~~~~~~~~~~~i~i~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~ 244 (324)
.+..+..+....++++..+ .+... .++.+.. .....++.++..++....|+|. ........+|+|||+ |+.+|
T Consensus 154 ~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iP~ 230 (445)
T PRK11357 154 TLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA--IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG-KTMPR 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc--ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-ccchH
Confidence 4433222221111222221 12111 0010100 0001123456677888899996 777778889999996 68999
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 020588 245 ALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 245 ~~~~s~~~~~~~Y~~~g~~ 263 (324)
++..+..++.++|++....
T Consensus 231 Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 231 ALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886554
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.60 E-value=2.8e-06 Score=82.13 Aligned_cols=240 Identities=13% Similarity=0.078 Sum_probs=137.3
Q ss_pred ceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY 98 (324)
Q Consensus 20 s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~ 98 (324)
|+++.....+++++|+|+...| . ..+.|.. .++..++.+.+. ........|......+ .-..-.-+++.+||+.+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~-~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-A-AASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-H-HTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-H-HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 5677788889999999999999 6 7788864 444444444444 4566666665432111 12344667888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc-hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-
Q 020588 99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKL-PYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST- 176 (324)
Q Consensus 99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~-~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~- 176 (324)
++......+.....+.++.....+.+...+.. +...+. ..+.+....++.....-.+..|..++++....+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP----DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG----GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccc----ccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhh
Confidence 99988888777777777776666666544211 101111 111111111111122223345666666655444333
Q ss_pred HHHHHHhhhhhccCccCCCC--cCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588 177 IYIVIAIWLSVRDGLKNPAR--DYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG 253 (324)
Q Consensus 177 ~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~ 253 (324)
....+.++..+.....+... +.......+..+...+.+++...|+|. ....+.+.+|+|| |+.+|+...+..++
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~ 230 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIISIIIV 230 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc---hhheeecccchhHH
Confidence 22222222233322111000 000000111122235778888999997 8888888889776 58999999999999
Q ss_pred HHHHHHHhhHHhhhcCC
Q 020588 254 VLPMFAVTFVGYWAYGN 270 (324)
Q Consensus 254 ~~~Y~~~g~~gy~~fG~ 270 (324)
.++|.+....-....++
T Consensus 231 ~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 231 AIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHTTSTH
T ss_pred HHHHhhhhheeeecccc
Confidence 99999886665555544
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.56 E-value=2.8e-05 Score=76.03 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=124.6
Q ss_pred hhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHHH
Q 020588 28 LTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYV 107 (324)
Q Consensus 28 l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~~ 107 (324)
-+++++|+|++-.|-.+.++.|- ..++..++.+++....+....|......+. -..-+-+++.+||+..+++.....+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~-Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDT-GSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHcChHHHHHHHHHHHH
Confidence 35789999999999853888886 477777888888888888888864422111 1345667789999998888887766
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 020588 108 NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLS 186 (324)
Q Consensus 108 ~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~ 186 (324)
.....+.......+..++. .. + +. ..+......+.. ..+.. ...|..+.+..+..+.-+...++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~----~~-~--~~--~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHS----WV-P--GI--PIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHh----cc-c--cC--cHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5554443333333322221 11 1 11 222222222110 11211 2233333333332221111111111111
Q ss_pred h--ccC-ccC-CCCcC-CC-C--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHH
Q 020588 187 V--RDG-LKN-PARDY-SI-P--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPM 257 (324)
Q Consensus 187 ~--~~~-~~~-~~~~~-~~-~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y 257 (324)
+ ..+ ... +.... +. + +..+..+.++..++....|+|. .......-+|+|||+ |+++|++..+.....++|
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-KHIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHH
Confidence 1 111 110 00000 00 0 1112234467788889999996 777777888999996 689999998888899999
Q ss_pred HHHhhH
Q 020588 258 FAVTFV 263 (324)
Q Consensus 258 ~~~g~~ 263 (324)
+.....
T Consensus 230 il~~~~ 235 (446)
T PRK10197 230 LCSIFV 235 (446)
T ss_pred HHHHHH
Confidence 886554
No 44
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.40 E-value=4.1e-05 Score=73.23 Aligned_cols=243 Identities=16% Similarity=0.162 Sum_probs=143.6
Q ss_pred cccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGV-VGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAG 90 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~-i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~ 90 (324)
.+-+|+.+.++--+.=++..||+| .++--.+ .+..| |++ +.-+++|++...-+..|.|...++.. .-|+.+.++
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~-I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~ 84 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSA-IAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYAR 84 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhcccchh-hhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHH
Confidence 335577889998899999999999 5677777 88888 443 34456788888888888887543222 248999999
Q ss_pred HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HH--HhcCCCCcchH-H
Q 020588 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LF--AIGIPNLSALG-V 166 (324)
Q Consensus 91 ~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~--l~~~~~l~~l~-~ 166 (324)
+.+||+..++++-.-...-.-.+++-+...+..++ +|-++. ..|+.....+.+ .. +...|.+.++. |
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~-----~WfP~v----P~Wv~al~~~~l~~~~NL~sVk~FGE~EfW 155 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQ-----FWFPDV----PQWVFALAAVVLLLAVNLISVKVFGELEFW 155 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777777777777777666665 333332 455433332220 11 22223444444 3
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hccCccCCC--CcCC-C---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCch
Q 020588 167 WLGVSTVLSTIYIVIAIWLS-VRDGLKNPA--RDYS-I---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPV 238 (324)
Q Consensus 167 ~S~~~~~~~~~~~~i~i~~~-~~~~~~~~~--~~~~-~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps 238 (324)
++.+=++..+. .|++++. +..+...++ ...+ + .+.-+..+.+++.++-+.+|||+ ...+-.--.|-|||+
T Consensus 156 fAlIKV~aIi~--~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~ 233 (462)
T COG1113 156 FALIKVAAIIA--FIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE 233 (462)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh
Confidence 34431111111 1222221 111211111 1111 1 12234566788999999999997 665555667899996
Q ss_pred hhhHHHHHHHHHHHHHHHH-----HHHhhHHhhhcCCC
Q 020588 239 VENMMKALYFQFSVGVLPM-----FAVTFVGYWAYGNS 271 (324)
Q Consensus 239 ~~~~~~~~~~s~~~~~~~Y-----~~~g~~gy~~fG~~ 271 (324)
|..+|++.--..=..++| +...+.-+-.++++
T Consensus 234 -k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 234 -KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred -hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 466676653322233333 34455555544443
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.20 E-value=0.00053 Score=67.58 Aligned_cols=249 Identities=9% Similarity=-0.066 Sum_probs=122.7
Q ss_pred cccccceeehhhhhhhc-cccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 15 LEMLDSWFQVGFVLTTG-INSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~-~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
-+|+-+.++....-.+. .+|+|+.++|..+....|- ..+...++.++.......-+.|......+.--.| .-+++.+
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y-~~~~~~~ 88 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIY-QWSRRMG 88 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHc
Confidence 44667777776555554 4788988888763556664 3455556666666677777777643211111123 3356789
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hc-cCCCC-CCc--hhhHHHHHHHHHHHHhcCCCCcchHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL---FW-KDDHT-MKL--PYFIAIAGFVCALFAIGIPNLSALGV 166 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~---~~-~~~~~-~~~--~~~~~i~~~~~~l~l~~~~~l~~l~~ 166 (324)
||+..+++.....+.......+.....+..+..+... +. +++.. ... ..+.+...++...-..-....|..++
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9998888887777665543333333333333322111 11 01110 011 11222111111011111223455555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCC--CCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYS--IPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM 243 (324)
Q Consensus 167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~ 243 (324)
+..+..+..+...+++++....+...++....+ ..+..+.....+..+.....|+|. .......-+|+|||+ |+.+
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~-r~iP 247 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR-RVAP 247 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc-hhhh
Confidence 544433322221111111112211111110010 001111112234445556678886 777777889999996 6899
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhh
Q 020588 244 KALYFQFSVGVLPMFAVTFVGYW 266 (324)
Q Consensus 244 ~~~~~s~~~~~~~Y~~~g~~gy~ 266 (324)
|++..+..+....|...-+....
T Consensus 248 rai~~s~~i~~~~~~~~~~~~~~ 270 (475)
T TIGR03428 248 RTILTALSVSALGGGLMILGALM 270 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877766554443333
No 46
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.05 E-value=0.0011 Score=64.62 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=99.9
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCC----ch--hhHHHHHHHHHHHHh
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK----LP--YFIAIAGFVCALFAI 156 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~----~~--~~~~i~~~~~~l~l~ 156 (324)
.++.-+.|..||++|.++..+...+..+|-...-....++.+..+++...+...+.. .. ...+++..+. ++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~-~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALV-LVFL 154 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHH-HHHH
Confidence 467889999999999999999999999999999999999999888777543211111 11 2222333333 3433
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhhhhhc-cCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHh-c--cCchhhhhc
Q 020588 157 GIPNLSALGVWLGVSTVLSTIYIVIAIWLSVR-DGLKNPARDYSIPGTTATKIFESIGACANLVFAF-N--TGMLPEIQA 232 (324)
Q Consensus 157 ~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf-~--h~~~~~i~~ 232 (324)
.+.-.|-+++....+.........+.+..... ++..+ ..+......+......+..++.. ..++ . -...++..+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~f~~~~~~-~~g~~~s~~~~~~DysR 232 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGP-LGELTGTLHGSTGAWAFLYALSL-VIGSFATWATNAPDFTR 232 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cccCCCCCCcchhHHHHHHHHHH-HHHHHHHHHcCchhhhh
Confidence 33323333334443332221111111111111 11110 00000000112233445555555 3344 2 478899999
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh----cCCCc
Q 020588 233 TIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA----YGNSS 272 (324)
Q Consensus 233 ~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~----fG~~~ 272 (324)
.+|+| ++-.+...++..........+|+.+-.. +|+..
T Consensus 233 y~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 233 FGKSK--KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hcCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99987 3334445556666666666666666554 77553
No 47
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.03 E-value=9.9e-05 Score=63.27 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=75.0
Q ss_pred hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh---------h-cC----ccc-------
Q 020588 24 VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE---------F-GG----KRH------- 82 (324)
Q Consensus 24 ~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~---------~-~~----~~~------- 82 (324)
...-..|-++|.|.|+||.| |+..||..++.++.+.++++.-+....+|+.. + .+ +++
T Consensus 17 gllymfnlivgtgalalpka-fatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd 95 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKA-FATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD 95 (319)
T ss_pred hHhhhhhhhhccccccchHh-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence 34456778899999999999 99999999999999999999999888888631 0 00 000
Q ss_pred ----------------------------------ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588 83 ----------------------------------IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (324)
Q Consensus 83 ----------------------------------~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i 127 (324)
....+++..-|.+.+-.+..++++++++|-...|--..-.+.-++
T Consensus 96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 123445555566777777888888888888888865554444444
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.00 E-value=0.0012 Score=65.45 Aligned_cols=242 Identities=9% Similarity=0.072 Sum_probs=114.6
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhhh-cCcccccHHHHHHHH
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEF-GGKRHIRYRDLAGHI 92 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~~-~~~~~~sy~~l~~~~ 92 (324)
.+||.|+++..+..+++++|.+ .+|.+ .+..|.. +++..++.+.+. ........|.... ++..--.| .-.+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~-~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y-~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRA-FYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIY-SWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHH-HHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH-HHHHHH
Confidence 4677899999888889999976 56888 8888863 444444444443 3345556665332 11001123 346678
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhccCC---CCCCchhhHHHHHHHH--HHHHhcCCCCcchHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQAL-KAAFVLFWKDD---HTMKLPYFIAIAGFVC--ALFAIGIPNLSALGV 166 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l-~~i~~~~~~~~---~~~~~~~~~~i~~~~~--~l~l~~~~~l~~l~~ 166 (324)
+||+.++++..............-........ ..++.....+. .+.+......+.+.+. ..-..-.+.+|..++
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~ 159 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAK 159 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 99988876554332222211111000000000 00000000000 0111111111112111 011222345555555
Q ss_pred HHHHHHHHHHH----HHHHHhhhhhccC-ccCCCCcC-CCCC--Cc-chhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588 167 WLGVSTVLSTI----YIVIAIWLSVRDG-LKNPARDY-SIPG--TT-ATKIFESIGACANLVFAFN-TGMLPEIQATIRQ 236 (324)
Q Consensus 167 ~S~~~~~~~~~----~~~i~i~~~~~~~-~~~~~~~~-~~~~--~~-~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ 236 (324)
++.++....+. ..++..+.....+ ..+.+.+. +... .+ .....+...++....|+|. .......-+|+||
T Consensus 160 i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~ 239 (496)
T PRK15238 160 VTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTEN 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccC
Confidence 55443222111 1111111111111 11001110 0000 00 1111345556677889996 7777778899999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhh
Q 020588 237 PVVENMMKALYFQFSVGVLPMFAVTF 262 (324)
Q Consensus 237 ps~~~~~~~~~~s~~~~~~~Y~~~g~ 262 (324)
|+ |+.+|+...+...+..+|++...
T Consensus 240 p~-~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 240 PE-KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred CC-ccccHHHHHHHHHHHHHHHHHHH
Confidence 96 68999999999999999987543
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.85 E-value=0.00016 Score=71.18 Aligned_cols=234 Identities=13% Similarity=0.022 Sum_probs=126.5
Q ss_pred hhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHH
Q 020588 28 LTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQY 106 (324)
Q Consensus 28 l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~ 106 (324)
-+.+++|+| .++.+.+ ..+.|....++..++.+++...++.-+.|..++..+ .-++-..+++.+||.....+...-.
T Consensus 6 ~ig~~ig~g~f~~~g~~-~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw~y~ 83 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFA-IAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGWAYW 83 (478)
T ss_pred eHHHHHHHHHHHHHHHH-HHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeHHHH
Confidence 356678877 4566777 889998777787888888888888888887553222 2245566778999988877777755
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhh----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Q 020588 107 VNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYF----IAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIA 182 (324)
Q Consensus 107 ~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~----~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~ 182 (324)
....-.........+..++.. +.+ ++.. +...| ..++..++ ..+... ..|.-+.....-...-+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~i~~~~~-~~l~~~-gv~~~~~~~~~~~~i~~~~li~~ 157 (478)
T PF00324_consen 84 LSYIAAIAAEATAAGSFLQFW-GYF--PGLP-STWVWGILIAIIFILLI-TLLNLF-GVRVSGKIEFILTIIKLIALIAF 157 (478)
T ss_pred HHHHHHHHhhhhhhhhhhccc-ccc--cccc-ccccccchhhhhhhhhh-hhhhhh-hhhccchHHHHHHHHhhhHhhhh
Confidence 444444444444444333322 101 1111 11222 22222222 122221 22333332222111111111111
Q ss_pred hhhh-h---ccCccCCC--CcCC------CCC----CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588 183 IWLS-V---RDGLKNPA--RDYS------IPG----TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA 245 (324)
Q Consensus 183 i~~~-~---~~~~~~~~--~~~~------~~~----~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~ 245 (324)
++.. + ....+.+. ...+ .++ ....++.+++.++....++|. .......-+|.|||+ |+++|+
T Consensus 158 ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~-k~IPra 236 (478)
T PF00324_consen 158 IIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR-KTIPRA 236 (478)
T ss_pred hhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-hhhhhH
Confidence 1111 1 11111111 0000 100 001135668888999999996 777777888999996 689999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588 246 LYFQFSVGVLPMFAVTFVGYWAYGN 270 (324)
Q Consensus 246 ~~~s~~~~~~~Y~~~g~~gy~~fG~ 270 (324)
...+.....++|+......-...+.
T Consensus 237 ~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 237 TLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhhhhhhhhhhhhhhhhhcccccCc
Confidence 9999999999998876654444443
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.79 E-value=0.0047 Score=60.88 Aligned_cols=242 Identities=12% Similarity=-0.029 Sum_probs=113.4
Q ss_pred ccccccccceeehhhhhhhcccc--cccc-chhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588 12 FFHLEMLDSWFQVGFVLTTGINS--AYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL 88 (324)
Q Consensus 12 ~~~~~~~~s~~~~~~~l~~~~iG--~GiL-~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l 88 (324)
+.+-+|+.+.++....-.. .+| +|+. +.+.+ ..+.|-...++..++.+++....+.-+.|......+. -+.-.-
T Consensus 7 ~~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~-Gg~y~~ 83 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFS-ISNSWTGISTTYNYG-LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS-GGQYFW 83 (482)
T ss_pred cceeecccchhHHHHHHHH-HHHHHHHHHHHHHHh-hhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 3345566777776544444 444 4543 34445 6677754445666777778888888888864321111 122333
Q ss_pred HHHHhC----CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--Cchh-hHHHHHHHHH-HHHhcCCC
Q 020588 89 AGHIYG----RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM--KLPY-FIAIAGFVCA-LFAIGIPN 160 (324)
Q Consensus 89 ~~~~~G----~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~--~~~~-~~~i~~~~~~-l~l~~~~~ 160 (324)
+++++| +...+++.....+.....+.+.....++.+..+....+ +++.. +... ..+..+.... ..+.. ..
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~in~-~g 161 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT-PGREYIPTRWHIFGIMIGIHLIHALINS-LP 161 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCchhhhhHHHHHHHHHHHHH-hh
Confidence 455665 44456666655555555555555555555554432221 11111 1111 1111111110 11111 12
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhccCccC-CCCcCC---C-CCC---cchhhhhHHhhhhHHHHHhc-cCchhhhh
Q 020588 161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN-PARDYS---I-PGT---TATKIFESIGACANLVFAFN-TGMLPEIQ 231 (324)
Q Consensus 161 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~-~~~~~~---~-~~~---~~~~~~~~~~a~~i~~faf~-h~~~~~i~ 231 (324)
.|..++...+..+..+....++++..+.....+ ++.+.. . +.. .+.. +....++....|+|. .......-
T Consensus 162 ~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~fsf~G~e~~~~~a 240 (482)
T TIGR00907 162 TKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGG-FAFLLGLLNPAWSMTGYDGTAHMA 240 (482)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCc-hhhhhhhhhhHHHhcCcchhhHHH
Confidence 233333333322222111111111111111100 011110 0 000 1111 234445555679996 77777788
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHHHHHH
Q 020588 232 ATIRQPVVENMMKALYFQFSVGVLPMFAV 260 (324)
Q Consensus 232 ~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~ 260 (324)
+|+|||+ |+++|++..+..+..++++..
T Consensus 241 ~E~knP~-r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 241 EEIENPE-VVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred HhcCChh-hhcCHHHHHHHHHHHHHHHHH
Confidence 9999995 689999998887766554433
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.71 E-value=0.0018 Score=64.48 Aligned_cols=47 Identities=6% Similarity=-0.019 Sum_probs=36.3
Q ss_pred hhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHh
Q 020588 214 ACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVT 261 (324)
Q Consensus 214 a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g 261 (324)
.+..+.|+|. .......-+|+|||+ |+++|++..+..++.++|.+..
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~-r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPG-RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCc-ccccHHHHHHHHHHHHHHHHHH
Confidence 3344578886 666667778999995 6899999999988888886533
No 52
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00086 Score=66.98 Aligned_cols=247 Identities=14% Similarity=0.085 Sum_probs=134.9
Q ss_pred ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccccHHHHHHHH
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHI 92 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~-~~~~~~~sy~~l~~~~ 92 (324)
+-+|+.+++.-.+.=+++++|+|+.-.-..+.++.|=..-++-.++.+.....++.-+.|..- .+.. .-++-..+++.
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~ 105 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRF 105 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeee
Confidence 445677888888888999999996544433378888666666667777777777777888533 2321 01234446667
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHhccCCCCCCchhhHHH-HHHHHHHHHhcCCCCcchHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF--VLFWKDDHTMKLPYFIAI-AGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~--~~~~~~~~~~~~~~~~~i-~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
.|+.....+.....+.-+-.+-+-....+..++... +.......+.+...|... +++++++.+...+-.-..+..+.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~ 185 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLA 185 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHH
Confidence 777777666666655555555555555555554432 000000012222333332 22222122222333233343333
Q ss_pred HHHHHHH-HHHHHHhhhhhccCccCCCCcCC------CCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhh
Q 020588 170 VSTVLST-IYIVIAIWLSVRDGLKNPARDYS------IPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVE 240 (324)
Q Consensus 170 ~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~ 240 (324)
+..+..+ -+.++.+++ ...+.+.++.++. .++ ..+..+.++..+..+..|+|. ...+-..-.|-|||+ |
T Consensus 186 ~~kvl~~v~~~Il~iVi-~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~-k 263 (554)
T KOG1286|consen 186 FNKILTAVGFIILAIVI-IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR-K 263 (554)
T ss_pred HHHHHHHHHHHHhheee-ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc-c
Confidence 3222111 111111111 1111111111111 011 112235567788888999996 655555667889996 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhH
Q 020588 241 NMMKALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 241 ~~~~~~~~s~~~~~~~Y~~~g~~ 263 (324)
..++++..++..++.+|+...+.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887654
No 53
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.63 E-value=0.0086 Score=58.82 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=135.7
Q ss_pred ccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
+|+...+.-.+.-++..||+| .++.-.+ .++.|=...++..+++|.+..+++.-|.|.+..... .-++.+.+.+..+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~-l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKA-LSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhcC
Confidence 356667777788899999999 5788888 999998888888888999999999999997543222 1258888888888
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhc--CCCCcchH-HHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG--IPNLSALG-VWLGVS 171 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~--~~~l~~l~-~~S~~~ 171 (324)
|.....+...-..+-.-++-.-++..+..++ +|.++. .+...|..++.+++ +.+.. .|...+.. |+|.+=
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~-----yW~p~~-v~~~~w~~iF~~~i-~~iN~~~Vk~fGE~Efw~s~iK 193 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQ-----YWFPDT-VPPWIWIAIFLVLI-FLLNLFGVKGFGETEFWFSSIK 193 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhh-----hhcCCC-CChHHHHHHHHHHH-HHHHHhcccccceehHHHHHHH
Confidence 7766555554333332222223333332222 443322 56677777776655 33332 24444444 445543
Q ss_pred HHHHHHHHHHHhhhhhccCccC-CCCcCCC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHH
Q 020588 172 TVLSTIYIVIAIWLSVRDGLKN-PARDYSI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKAL 246 (324)
Q Consensus 172 ~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~ 246 (324)
++..+.+..+.++. ...+.++ +....+. ++.-+..+.++...+-+..|||+ .-++----.|-++|+ |..||++
T Consensus 194 V~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~-K~iPkAi 271 (541)
T COG0833 194 VLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR-KSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch-hhhHHHH
Confidence 33222222222221 1222221 1111111 11112334566666777788886 544433446778886 5788888
Q ss_pred HHHHHHHHHHHHH
Q 020588 247 YFQFSVGVLPMFA 259 (324)
Q Consensus 247 ~~s~~~~~~~Y~~ 259 (324)
.--+.=...+|+.
T Consensus 272 k~vfwRIl~FYi~ 284 (541)
T COG0833 272 KQVFWRILLFYIL 284 (541)
T ss_pred HHHHHHHHHHHHH
Confidence 8766666777755
No 54
>PRK11375 allantoin permease; Provisional
Probab=97.61 E-value=0.022 Score=56.32 Aligned_cols=186 Identities=13% Similarity=0.034 Sum_probs=92.9
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhcc-----CCC----CCCchhhH--HHHHHH
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQY-VNLFMINTGYIILAGQALKAAFVLFWK-----DDH----TMKLPYFI--AIAGFV 150 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~-~~~~g~~i~y~i~~~~~l~~i~~~~~~-----~~~----~~~~~~~~--~i~~~~ 150 (324)
.++.-+.|..||++|.++..+... +..+|=-.......++.+..+.+...+ +++ ..+...++ +++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 578999999999999988888884 567777677777788888877766432 111 12222222 123332
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCC--CcchhhhhHHhhhhHHHHHhc--cCc
Q 020588 151 CALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPG--TTATKIFESIGACANLVFAFN--TGM 226 (324)
Q Consensus 151 ~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~i~~faf~--h~~ 226 (324)
. .+... ...|.+++++.++............+..+.+....+..+....+ ......+.+..++...+=++. -..
T Consensus 169 ~-~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 169 N-VGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred H-HHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 2 23333 34567777766654433222222221122111000111110000 001112334444433333444 457
Q ss_pred hhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHH----hhhcCCCc
Q 020588 227 LPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVG----YWAYGNSS 272 (324)
Q Consensus 227 ~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~g----y~~fG~~~ 272 (324)
.|..-+..|+| |+-.+.-.++..+...+...+|+.. ...+|+..
T Consensus 247 ~~D~tRy~k~~--~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 247 ASDFTQNAHSF--RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred ccchhcccCCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88888888887 4444444445555444443333332 34555543
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.03 Score=54.29 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=100.2
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchH
Q 020588 86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG 165 (324)
Q Consensus 86 ~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~ 165 (324)
-.++|..||++|+++..+.+.+.++|-...-.+..++... ...+.+...++++.+++++ ..... -.+.++
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~--------~~~~~~~~~~ili~g~l~~-l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIG--------SGTGLPVWAGILIIGVLMT-LVTIF-GYRALH 153 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccc--------cCCCCcHHHHHHHHHHHHH-HHHHH-hHHHHH
Confidence 4468999999999999999999999998888888877611 1234455666777766552 22222 233444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc-cCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc--cCchhhhhccccCchhhhH
Q 020588 166 VWLGVSTVLSTIYIVIAIWLSVR-DGLKNPARDYSIPGTTATKIFESIGACANLVFAFN--TGMLPEIQATIRQPVVENM 242 (324)
Q Consensus 166 ~~S~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~--h~~~~~i~~~m~~ps~~~~ 242 (324)
.++..+...........++..+. ++.. +..... ++.++.++..++...+=.+. -....+.-+-+|+|+.++.
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~--~~~~~~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~ 228 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKGGL--DALWVK---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKA 228 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--ceeecc---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHH
Confidence 44444333222222222222222 1111 111111 12223344444443322232 4677788788888732244
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhcCCCc-ccccccCcC
Q 020588 243 MKALYFQFSVGVLPMFAVTFVGYWAYGNSS-SSYLLNNVS 281 (324)
Q Consensus 243 ~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~ 281 (324)
-.....+......+-..+|...-.+=|++. ..++...+.
T Consensus 229 ~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G 268 (442)
T COG1457 229 FLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG 268 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 445556666666666777888888877765 333333333
No 56
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.35 E-value=0.035 Score=53.32 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=102.6
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
.++.-+.|..||++|.++..+...+...|--.......++.++.+.+...+.+ +...++.+++++. .+.+.. ..|
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~---~~~~~~~i~~~l~-~~~~~~-G~~ 132 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE---SPMLWILIVGILV-TLWLLS-GPL 132 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHH-HHHHHH-HHH
Confidence 46889999999999999999999999999888888899999999876532211 1233444444433 233333 356
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHh--c-cCchhhhhccccCchh
Q 020588 163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF--N-TGMLPEIQATIRQPVV 239 (324)
Q Consensus 163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf--~-h~~~~~i~~~m~~ps~ 239 (324)
.++++..++............+....+... ++ ..+. +.+ ..+..++... .++ . -...|+..+..|+|
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~----~~~-~s~~~~~~~~-~~~~~swa~~~~DysRy~k~~-- 202 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKADL-SE-LWNR----AGD-MSFAVAVELV-IAMPLSWLPLIADYTRFARNP-- 202 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch-hh-hcCC----CCC-ccHHHHHHHH-HHHHHHHHHHccchhhhcCCC--
Confidence 677776665443332222222212222111 01 1111 111 2223333322 222 2 34578888887777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS 271 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~ 271 (324)
|+..+...++..+...+-..+|...-.+.+++
T Consensus 203 ~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 203 RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56666777777777777777787766666653
No 57
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.34 E-value=0.025 Score=55.67 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 020588 217 NLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVG 264 (324)
Q Consensus 217 i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~g 264 (324)
.+.|+|. .......-+|+|||+ |+.+|++..+..++.++|++....-
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~-r~iPrAi~~~~~~~~~~y~l~~~~~ 249 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD-KNYPIAILIAALGTVLIFVLGTLAI 249 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578895 666666778999996 6899999999999999998765543
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.21 E-value=0.022 Score=52.62 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=71.6
Q ss_pred hhhhhhccccccccc----hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchh
Q 020588 25 GFVLTTGINSAYVLG----YPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL 100 (324)
Q Consensus 25 ~~~l~~~~iG~GiL~----LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~ 100 (324)
.|-.+.+.+|+|.=+ +=+ |.+-|+ .|..-.++++.+-..++..+.+..++-+. .+|+|.-++.+||+..++
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QF--F~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQF--FGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHhhcccccchHHHHHH--HHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHH
Confidence 455667888887643 111 344554 35556666777777777777776554333 379999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588 101 TWGLQYVNLFMINTGYIILAGQALKAA 127 (324)
Q Consensus 101 v~~~~~~~~~g~~i~y~i~~~~~l~~i 127 (324)
.++.+...++++++.-+-..|+.++..
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~ 110 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 999999999999998887777677653
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.20 E-value=0.16 Score=50.09 Aligned_cols=146 Identities=15% Similarity=0.057 Sum_probs=87.4
Q ss_pred cccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHH--HHHHHHH-HHHHHHHHHhhhcCcccccHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLI--IATIVSL-NANALIAKLHEFGGKRHIRYRDL 88 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li--~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l 88 (324)
....|+.+++...+.+..+.+|+ ..++.|-- ..+.|+.+..+... ..+.++. .-+..+.+..++.| ..|..|.
T Consensus 36 ~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~ 112 (471)
T TIGR02119 36 FLGGRSMGGFVLAMTLVATYGSASSFIGGPGI-AYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDV 112 (471)
T ss_pred eEeCCcccHHHHHHHHHHHHhhHHHHcCcHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHH
Confidence 34456778888889999999986 48889988 88888643211111 1111111 11122222233333 3699999
Q ss_pred HHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588 89 AGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (324)
Q Consensus 89 ~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~ 167 (324)
-++-||++. +++..+...+..++...+.+...+..++.+++ ++...-+++.+++. +....+--++...+.
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GG~~av~~t 183 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSV-LIYTTFGGFRAVALT 183 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence 999999665 67788888877777777777777777766532 23233333333332 233344566676666
Q ss_pred HHH
Q 020588 168 LGV 170 (324)
Q Consensus 168 S~~ 170 (324)
..+
T Consensus 184 d~i 186 (471)
T TIGR02119 184 DAI 186 (471)
T ss_pred HHH
Confidence 665
No 60
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.13 E-value=0.16 Score=50.36 Aligned_cols=151 Identities=14% Similarity=0.023 Sum_probs=93.6
Q ss_pred cccccceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHH---HHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588 15 LEMLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLI---IATIVSLNANALIAKLHEFGGKRHIRYRDLAG 90 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li---~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~ 90 (324)
..|+.+.+-..+....+..+ .-.+++|-. ..+.|+....+... .......+...-+.|..+. ++..|..|.-+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~-ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~--~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGL-AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA--RGATTIPDFLE 112 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCccHHHHHH
Confidence 34444555666777777777 679999998 89999754333332 2222222333333333321 23468999999
Q ss_pred HHhC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588 91 HIYG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (324)
Q Consensus 91 ~~~G-~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~ 169 (324)
+-|| ++.|.+..+...+..++-+...+...++.++..+. .+...-+++.+.++ +.-..+--++...+...
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v-~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIV-ALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHH-HHHHHHcChhHHHHHHH
Confidence 9999 88899999999999999999999888888865432 22222223333333 23334445677777776
Q ss_pred H-HHHHHHH
Q 020588 170 V-STVLSTI 177 (324)
Q Consensus 170 ~-~~~~~~~ 177 (324)
+ +.++.+.
T Consensus 184 iqg~im~i~ 192 (493)
T COG0591 184 IQGLIMLIA 192 (493)
T ss_pred HHHHHHHHH
Confidence 6 4444433
No 61
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.05 E-value=0.019 Score=55.94 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=60.5
Q ss_pred eeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchh
Q 020588 21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL 100 (324)
Q Consensus 21 ~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~ 100 (324)
|++..+++.+-.+|+..+++ ..++.-+++..++...+..--.-+....-.++| .+..-++|..||.+|+.+
T Consensus 18 W~~~~~~~~~~~~G~~~~~~------gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~FG~~Gs~l 88 (440)
T PF02133_consen 18 WFGANISIATFVTGALGVAL------GLSFWQAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASFGYRGSKL 88 (440)
T ss_dssp HCHHH-SCHHH-HHHHHHCC------CS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS-TTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHcc------CchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhccCcchHHH
Confidence 34444455555555543221 223333444444433333222333333333444 467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 020588 101 TWGLQYVNLFMINTGYIILAGQALKAAFVLF 131 (324)
Q Consensus 101 v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~ 131 (324)
..+...+..+|-...-..+.++.+..+.+..
T Consensus 89 ~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 89 PSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999998888899999999887653
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=96.92 E-value=0.11 Score=50.25 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=83.2
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
.++.-+.|..||++|.++..+...+..+|-........++.++.+. + .+...+.++++++. .+..... .+
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~---~-----~~~~~~~~i~~~l~-~~~~~~G-~~ 140 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT---G-----LDINLLIVLSGLLM-TVTAYFG-IS 140 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---C-----CCHHHHHHHHHHHH-HHHHHHH-HH
Confidence 5789999999999999999988888887766665555666555432 1 12222444444443 2333332 34
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc--cCchhhhhccccCchhh
Q 020588 163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN--TGMLPEIQATIRQPVVE 240 (324)
Q Consensus 163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~--h~~~~~i~~~m~~ps~~ 240 (324)
.++++...+........+...+....+....++.. +.+ +.....+..++...+=.+. -...++.-+..|+| |
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~-~~~---~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~--~ 214 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLK-AIV---PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSA--K 214 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh-cCC---CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCc--c
Confidence 44444444332222111111111122110000000 000 1111234444443332232 46778887777766 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588 241 NMMKALYFQFSVGVLPMFAVTFVGYWAYGN 270 (324)
Q Consensus 241 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~ 270 (324)
+.......+..+...+-..+|...-.+.|+
T Consensus 215 ~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 215 IAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 322334444444444444555554455554
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.90 E-value=0.049 Score=52.52 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=89.2
Q ss_pred ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
.|+.+++...+.+..+.+|+ ..++.|-. ..+.|+. +................+..+..++.+ ..|..|.-++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGA-IYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhC
Confidence 36677888888888888885 68999988 8888863 322222222223334444545444433 4689999999999
Q ss_pred CC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 95 ~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
++ .|.+..+...+..+......+...+..++.+++ ++...-+++.+.++ +....+--++...+.-.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~-~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAIT-ILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHH-HHHHHHcchHHHHHHHHH
Confidence 84 677777777778888888888888877776532 22222233333333 333444566666666555
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.83 E-value=0.59 Score=46.21 Aligned_cols=146 Identities=18% Similarity=0.092 Sum_probs=83.1
Q ss_pred cccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHH--HHHHHHHH-HHHHHHHHHhhhcCcccccHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGL--IIATIVSL-NANALIAKLHEFGGKRHIRYRDL 88 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~l--i~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l 88 (324)
....|+.+++...+.+..+.+|+ ..++.|-. ..+.|+....... .....++. .-+..+.+..++.+ ..|..|.
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~ 113 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGA-AYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDM 113 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhCChhH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHH
Confidence 34456667787888888887775 68888877 7777863211111 11111111 12222333333333 4699999
Q ss_pred HHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588 89 AGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (324)
Q Consensus 89 ~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~ 167 (324)
-++-||++. +.+..+...+..++...+.+...+..++.+++ ++...-+++.++++ +....+-.++...+.
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~av~~T 184 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYETGLLIFGITV-ALYTAFGGFRAVVLT 184 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhccHHHHHHH
Confidence 999999764 55666666666666666667777777766531 23333334444433 344455566776666
Q ss_pred HHH
Q 020588 168 LGV 170 (324)
Q Consensus 168 S~~ 170 (324)
-.+
T Consensus 185 D~i 187 (483)
T PRK09442 185 DAL 187 (483)
T ss_pred HHH
Confidence 655
No 65
>PRK12488 acetate permease; Provisional
Probab=96.56 E-value=0.66 Score=46.70 Aligned_cols=142 Identities=16% Similarity=0.099 Sum_probs=87.4
Q ss_pred cccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 15 LEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
..|+.+++...+.+..+.++++ .++.|-. ..+.|+- +....+. ..+.. ....++.+-.++.++ .|..|.-++=
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~-~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAM-MFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNLGK--YTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHCCC--cchHHHHHHH
Confidence 3467788888889988888864 7999987 7888863 2222111 11111 112334443334443 6889988877
Q ss_pred hC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 93 YG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 93 ~G-~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
|| |+.|.+..+...+..+.-....+...|..++.+++ ++...-+++.+++. +.-..+--++...+...+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLYAVVIVGALM-VLYVTFGGMLATTWVQII 209 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhccchhHHHHHHHH
Confidence 87 55788888887777777777777777777766531 22222233444443 344455567777777766
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.35 E-value=1.2 Score=44.73 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=81.8
Q ss_pred cccccceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 15 LEMLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
..|+.+++...+.+..+.++ +..++.|-. ..+.|+- +....+. ..+.. -...++.+-.++.|+ .|..|.-++=
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~-~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISAL-VYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLGR--YTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHH
Confidence 34566677777788878777 578999987 7777863 2222211 11111 223334443344443 6899988887
Q ss_pred hCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 93 YGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 93 ~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
||++ .|.+..+...+..+.-....+...+..++.+++ ++...-+++.+.++ +.-..+--++...+...+
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYHVAVVLVGILM-VMYVLFGGMLATTWVQII 209 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHH
Confidence 8754 577777777666666666666666666665531 22222233344433 344444566676777666
No 67
>PRK09395 actP acetate permease; Provisional
Probab=96.25 E-value=0.96 Score=45.56 Aligned_cols=144 Identities=16% Similarity=0.069 Sum_probs=83.7
Q ss_pred ccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 14 HLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
...|+.+++...+.+..+.+++ ..++.|-. ..+.|+.. ....+....-......++.+-.++.+. .|+.|.-++=
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~-~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~g~--~T~~d~l~~R 141 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISAL-VFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNLGK--YTFADVASYR 141 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHH-HHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCC--ccHHHHHHHH
Confidence 3446677777888888888885 58999987 77888732 221111111111222333443334443 6999988888
Q ss_pred hCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 93 YGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 93 ~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
||++ .|.+..+...+..+....+.+...+..++.+++ ++...-+++.++++ +.-..+--++...+...+
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~~~ili~~~i~-~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYHVAVVLVGVLM-MVYVLFGGMLATTWVQII 211 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhhcchHHHHHHHHH
Confidence 9854 677777776666666666666666666655421 23233334444433 344445566676666665
No 68
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.22 E-value=0.11 Score=48.98 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=76.5
Q ss_pred cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHH----HHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLII----ATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~----~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
...+....|=..++-|+|-+-=|-. -.+-||+|+.+-.++ .|.+-.|...+. ..|+.| .|..|++++..|
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~-aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~--SvR~~G---~Si~~i~~~~lG 125 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPIL-AAQFGWLPALLWIVFGCIFAGAVHDYGSLMA--SVRHKG---KSIGEIAGKYLG 125 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHH-HHHhcchHHHHHHHHccHHHHHHHHHHHHhh--hhcCCC---ccHHHHHHHHHH
Confidence 4455566677789999999999998 899999988887654 333444444333 122333 389999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKA 126 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~ 126 (324)
|++|++..+...+.++-...++....++.+..
T Consensus 126 ~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 126 KRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888888887777766654
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.12 E-value=0.12 Score=50.00 Aligned_cols=85 Identities=12% Similarity=-0.075 Sum_probs=51.7
Q ss_pred cccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhhcCcccccH-----HH
Q 020588 17 MLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVG---LIIATIVSLNANALIAKLHEFGGKRHIRY-----RD 87 (324)
Q Consensus 17 ~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~---li~~~~~~~yt~~lL~~~~~~~~~~~~sy-----~~ 87 (324)
++.|-+|+.+....+.+|.| ++++|-| .+..| --+++- ..+.+..+.|.-..|..-.++.++ +.+| -.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHH
Confidence 34799999999999999998 9999999 88887 123222 222333444444444433332211 1235 56
Q ss_pred HHHHHhCCCcchhHHHH
Q 020588 88 LAGHIYGRRAYALTWGL 104 (324)
Q Consensus 88 l~~~~~G~~g~~~v~~~ 104 (324)
+-+...|||...+..++
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 77776666655555544
No 70
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.01 E-value=0.23 Score=47.70 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=78.3
Q ss_pred ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
.|+.+++...+.+..+.+|+ .+++.|-. ..+.|+.. ....+............+.+-.++.+ ..|..|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~-~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGF-AYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHH-HHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcce-eeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcC
Confidence 45667888888888888886 58899988 88888753 22323333333334444555444333 4689999999999
Q ss_pred CCc--chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 95 RRA--YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 95 ~~g--~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
++. +.+..+...+..+......+...+..++.++ +++....+++.+.++ +....+--++...+...+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~-~iYt~~GGl~av~~td~i 149 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIV-IIYTFFGGLRAVAWTDFI 149 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHH-HHTTCTT------SHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHH-HHhhhhhhHhhhhHHHHH
Confidence 988 6666666666666666677777776666542 133333344444433 344455566666666655
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.93 E-value=1.6 Score=42.96 Aligned_cols=192 Identities=12% Similarity=0.129 Sum_probs=95.2
Q ss_pred cccHHHHHHHHhCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC----CC-----CCCchhhH--HHH
Q 020588 82 HIRYRDLAGHIYGRRAYA---LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKD----DH-----TMKLPYFI--AIA 147 (324)
Q Consensus 82 ~~sy~~l~~~~~G~~g~~---~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~----~~-----~~~~~~~~--~i~ 147 (324)
..+|..+.|..||-+|.. +.+...-+.-+|.-+ =..+..+..++.+..+. ++ ..+...++ +++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 368999999999988754 333333334444432 23455555555553322 21 12444443 233
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH-HHHhhh-hhccCccCCCCcCCCC---CCcchhhhhHHhhhhHHHHHh
Q 020588 148 GFVCALFAIGIPNLSALGVWLGVSTVLSTIYI-VIAIWL-SVRDGLKNPARDYSIP---GTTATKIFESIGACANLVFAF 222 (324)
Q Consensus 148 ~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~-~i~i~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~i~~faf 222 (324)
.++. .++..+..+++|++-..+.......+ ..++.. .-.++.. ...+++ ...+...+.++.++...+=.|
T Consensus 179 W~l~--~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~---~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~ 253 (497)
T COG1953 179 WVLQ--LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSS---ILGELPAGTVSGSNSSWAFLAGIAAWVGFW 253 (497)
T ss_pred HHHH--HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcC---ccccCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 3333 23334457888887766433222211 122221 1122211 011111 111222344444444444344
Q ss_pred c--cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhh----HHhhhcCCCc--ccccccCcCCc
Q 020588 223 N--TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTF----VGYWAYGNSS--SSYLLNNVSGP 283 (324)
Q Consensus 223 ~--h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~----~gy~~fG~~~--~~~il~~~~~~ 283 (324)
. .-.+|..-+.-|+|+ .-.+.-.++.-+.+.+..++|+ ..+..||++. +.++++++++.
T Consensus 254 Atl~lN~~DFsRfa~s~~--~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~ 320 (497)
T COG1953 254 ATLALNIPDFTRFAKSQK--AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSG 320 (497)
T ss_pred HHHhcCCchhhcccCChh--hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccc
Confidence 4 577888888777773 3333323444455555545444 4688899985 45788888843
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=94.98 E-value=4.6 Score=40.70 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=86.6
Q ss_pred cCccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588 10 SYFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL 88 (324)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l 88 (324)
+|-....|+.+++...+.+..+.+++ ..++.|-. ..+.|+- +................++.+-.++.|. .|-.|.
T Consensus 25 ~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~~~--~T~~e~ 100 (552)
T TIGR03648 25 SEFYVAGRGVPPVANGMATAADWMSAASFISMAGL-IAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKFGK--YTVPDF 100 (552)
T ss_pred HHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHH-HHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--ccHHHH
Confidence 34444557788888888998888875 58889977 6777863 2111111111112234555555555443 577887
Q ss_pred HHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588 89 AGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (324)
Q Consensus 89 ~~~~~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~ 167 (324)
-++=||++ .|.+..+...+..+......+...+..++.+.+ ++...-+++.++++ +.-..+--++...+.
T Consensus 101 l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~-~iYt~~GG~~aV~~T 171 (552)
T TIGR03648 101 IGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIV-FFYAVLGGMKGVTWT 171 (552)
T ss_pred HHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence 77778866 477777777666776666667666666665532 22222233344433 334344456666666
Q ss_pred HHH
Q 020588 168 LGV 170 (324)
Q Consensus 168 S~~ 170 (324)
-.+
T Consensus 172 D~i 174 (552)
T TIGR03648 172 QVA 174 (552)
T ss_pred HHH
Confidence 555
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.83 E-value=4.7 Score=40.08 Aligned_cols=148 Identities=12% Similarity=0.039 Sum_probs=76.7
Q ss_pred Cccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHH-HHhh--hcCcccccH
Q 020588 11 YFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIA-KLHE--FGGKRHIRY 85 (324)
Q Consensus 11 ~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~-~~~~--~~~~~~~sy 85 (324)
|---..|+.+++...+.+..+.+++ ..++.|-. ..+.|+-. ... .+...+. .....++. |... ....+..|-
T Consensus 34 dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~-~y~~G~~~-~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~ 110 (502)
T PRK15419 34 DYILGGRSLGPFVTALSAGASDMSGWLLMGLPGA-VFLSGISE-SWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTL 110 (502)
T ss_pred HheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHH-HHHcCHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeH
Confidence 3334456778888888888888886 47889988 88888742 111 1111111 11112222 1111 111234688
Q ss_pred HHHHHHHhCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 86 RDLAGHIYGRRAYAL---TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 86 ~~l~~~~~G~~g~~~---v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
.|.-++=||++.|.+ ..+...+..+.-+.+-+...+..++.++ +++...-+++.+.++ +.-..+--++
T Consensus 111 ~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv-~iYt~~GGl~ 181 (502)
T PRK15419 111 PDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAAT-ILYTFIGGFL 181 (502)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhhhHH
Confidence 888888899765443 3333333333434444444555555442 123233333433433 3444455566
Q ss_pred chHHHHHH
Q 020588 163 ALGVWLGV 170 (324)
Q Consensus 163 ~l~~~S~~ 170 (324)
...+.-.+
T Consensus 182 aV~~TD~i 189 (502)
T PRK15419 182 AVSWTDTV 189 (502)
T ss_pred HHHHHHHH
Confidence 66666665
No 74
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.12 E-value=1.1 Score=42.84 Aligned_cols=78 Identities=6% Similarity=0.070 Sum_probs=56.1
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
.-..+++++.||+.|+.+..+.+.+.|++++++.....+|.++.+.. ..+.+.|.++..... ...+.. .++
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s-~~ia~~-Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFS-FIVANL-GLT 325 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH-HHHHHh-CHH
Confidence 34778999999999999999999999999999999998888876521 255666766655544 222222 345
Q ss_pred chHHHHH
Q 020588 163 ALGVWLG 169 (324)
Q Consensus 163 ~l~~~S~ 169 (324)
++-.++.
T Consensus 326 ~Ii~~~~ 332 (378)
T TIGR00796 326 QIISISI 332 (378)
T ss_pred HHHHHHH
Confidence 5444443
No 75
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.89 E-value=6.3 Score=37.77 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=42.8
Q ss_pred hhhccccccccchhhhhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHH
Q 020588 28 LTTGINSAYVLGYPGTVMVPLG--WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQ 105 (324)
Q Consensus 28 l~~~~iG~GiL~LP~a~~~~~G--~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~ 105 (324)
+..-.+|+|-|-.|-.+-.+.| |.++.+..++.++..-.-+.. +..+.| -+|+++.++ +||+...+....+
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g---G~~~~l~~~-~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG---GGYDSLSAR-IGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC---CCHHHHHHH-hChHHHHHHHHHH
Confidence 3445689998888866444444 556666666666555444333 211222 268998885 7777766655554
Q ss_pred H
Q 020588 106 Y 106 (324)
Q Consensus 106 ~ 106 (324)
+
T Consensus 77 ~ 77 (378)
T TIGR00796 77 Y 77 (378)
T ss_pred H
Confidence 4
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=93.42 E-value=0.68 Score=46.85 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=70.1
Q ss_pred cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHH----HHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIAT----IVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~----~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
..-+--.-|=..++-|+|-+-=|.- ..+.||.|+.+-.++-. .+-.|..... ..|+.| +|..|++++..|
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvl-Aa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~--S~R~~G---rSig~ia~~~iG 156 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVL-AAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV--STRRDG---RSLGELVKEEMG 156 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHH-HHHHcchHHHHHHHHcceeechhhhhhheee--eecCCC---ccHHHHHHHHhh
Confidence 3334445577789999999999998 89999999998876532 2222222211 222333 389999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQAL 124 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l 124 (324)
|+++.+..+...+.+.-..-++..+..+.+
T Consensus 157 ~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 157 PTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877777766666655555555
No 77
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=92.82 E-value=10 Score=37.15 Aligned_cols=231 Identities=17% Similarity=0.157 Sum_probs=121.6
Q ss_pred ceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--hhhcCcccccHHH-HHHHHhCC
Q 020588 20 SWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL--HEFGGKRHIRYRD-LAGHIYGR 95 (324)
Q Consensus 20 s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~--~~~~~~~~~sy~~-l~~~~~G~ 95 (324)
+-+|.-+-+.+..+- ++.|++|-. ..-.|+ .|.+..+ |+..-|....++-+ .|..|| .|.+| ++++.--+
T Consensus 44 ~~fqNGlAiagdyMSaASflGiag~-I~~~GY-dG~~Y~i--G~~~Gy~i~~fL~A~~LRk~Gk--yT~aD~~a~Ry~~~ 117 (529)
T COG4147 44 TGFQNGLAIAGDYMSAASFLGIAGL-IFISGY-DGLIYSI--GWTGGYPILLFLIAEYLRKLGK--YTFADFIADRYKSN 117 (529)
T ss_pred cccccceehhccccchHhhhchhHh-hhhccc-chHHHHH--HHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHhcc
Confidence 444444445555544 567888877 777775 4555543 44444444444333 444555 58899 55665556
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH-HHHH
Q 020588 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV-STVL 174 (324)
Q Consensus 96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~-~~~~ 174 (324)
+.|++..+.-++..+--.++.+...|..+..+++. +...-+++.+.++ +....+--++...|...+ +.+.
T Consensus 118 ~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------~~~vgv~ig~ilm-~~Yvv~GGM~atTW~Qi~qavlL 188 (529)
T COG4147 118 PARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------PYHVGVVIGGILM-MVYVVLGGMKATTWVQIIQAVLL 188 (529)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------CceeehhhHhHHH-HHHHHhcchhhhhHHHHHHHHHH
Confidence 77888888877777777888888888888776431 1111122333332 344455678888888887 3333
Q ss_pred HHHHHHHHhhhhhcc-Ccc---------CCCCc----CCCCCCcchhhhhHHhhhhHHHHHhccCchhhh-hccccCchh
Q 020588 175 STIYIVIAIWLSVRD-GLK---------NPARD----YSIPGTTATKIFESIGACANLVFAFNTGMLPEI-QATIRQPVV 239 (324)
Q Consensus 175 ~~~~~~i~i~~~~~~-~~~---------~~~~~----~~~~~~~~~~~~~~~~a~~i~~faf~h~~~~~i-~~~m~~ps~ 239 (324)
.+.+.+..+.+.... +.. .++.+ ...++....+..+++.-.-...+.. .-+|-+ .+--.-|+.
T Consensus 189 i~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GT--AgLPHil~RFfTvp~~ 266 (529)
T COG4147 189 IVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGT--AGLPHILMRFFTVPDA 266 (529)
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHcc--CCCCeEEEEEEecCcH
Confidence 333333333322111 111 11110 0001111111122221111122222 222211 122234556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
|+-||++.++..+...+|+..-..|+.+
T Consensus 267 k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 267 KEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999876666543
No 78
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.79 E-value=10 Score=37.75 Aligned_cols=47 Identities=2% Similarity=0.088 Sum_probs=26.9
Q ss_pred cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588 224 TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS 271 (324)
Q Consensus 224 h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~ 271 (324)
...-+-+-+|-||++ ++-+|++..+..+..++=...-+.-..+-++|
T Consensus 268 yDa~~H~aEE~~nAs-k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 268 YDAAAHMAEETKNAS-KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred cCchHHHHHHhcchh-hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344455667778887 46777777666665554433333334444443
No 79
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.97 E-value=5.7 Score=38.50 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=82.8
Q ss_pred Cccccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHH---HHHHHHHHHHHHHHhhhcCcccccHH
Q 020588 11 YFFHLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIA---TIVSLNANALIAKLHEFGGKRHIRYR 86 (324)
Q Consensus 11 ~~~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~---~~~~~yt~~lL~~~~~~~~~~~~sy~ 86 (324)
++.+++++.|-+|+.+.-+.+.+|.| +.+..-| ....|= -+++-+-++ +..+-|+=-.|..-+|+.+++ -+|.
T Consensus 11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~A-I~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~-G~~~ 87 (416)
T PF01235_consen 11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATA-IAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREKDED-GEYR 87 (416)
T ss_pred CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEECCC-CCEe
Confidence 34455556799999999999999998 8889988 877772 233333333 334445555555555432221 1222
Q ss_pred H----HHHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCC
Q 020588 87 D----LAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNL 161 (324)
Q Consensus 87 ~----l~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l 161 (324)
. ..++.+|+|+ ..+..++ .+..+|. .....-.+++....+. ..+++.....++.++++ .+..+..+
T Consensus 88 GGP~yyi~~gl~~k~la~~fai~-~~~~~~~--~~~~~Q~nsi~~~~~~----~f~i~~~~~gi~l~~l~--~~vi~GGi 158 (416)
T PF01235_consen 88 GGPMYYIEKGLGSKWLAILFAIF-LIIAFGI--GFNMVQANSIADALSS----AFGIPPWITGIILAILV--ALVIFGGI 158 (416)
T ss_pred ecHHHHHHHHhccchHHHHHHHH-HHHHHHh--hhhHHHHHHHHHHHHh----hccccHHHHHHHHHHHH--HHHHHcch
Confidence 2 4455666443 3333333 1122221 1111112222222211 11233222223333332 33344567
Q ss_pred cchHHHHH-HHHHHHHHHHHHHhhhhhcc
Q 020588 162 SALGVWLG-VSTVLSTIYIVIAIWLSVRD 189 (324)
Q Consensus 162 ~~l~~~S~-~~~~~~~~~~~i~i~~~~~~ 189 (324)
|+++.++. +.-++.+.|.+..+++-+.+
T Consensus 159 krI~~v~~~lVP~Ma~~Yi~~~l~ii~~n 187 (416)
T PF01235_consen 159 KRIAKVSEKLVPFMAILYILGGLIIIIIN 187 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77776655 35566777776666554443
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=90.96 E-value=18 Score=35.85 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=73.9
Q ss_pred ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-hhhc--CcccccHHHHHHH
Q 020588 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL-HEFG--GKRHIRYRDLAGH 91 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~-~~~~--~~~~~sy~~l~~~ 91 (324)
.|+.+++...+.+..+.+++ -.++.|-. ..+.|+.. .................+.+- ++.. +.+..|-.|.-++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~-~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGA-LYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHH-HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 46667887888887777775 47888977 67778742 222211111122223333332 2211 1234688999999
Q ss_pred HhCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHH
Q 020588 92 IYGRRAYAL---TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL 168 (324)
Q Consensus 92 ~~G~~g~~~---v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S 168 (324)
=||++.|.+ ..+...+....-....+...+..++.+++ ++...-+++.++++ +.-...--++...+.-
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYKTGLLIGALII-VIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 999765543 33333333333344444555555554421 22222233333333 3343444566666665
Q ss_pred HH
Q 020588 169 GV 170 (324)
Q Consensus 169 ~~ 170 (324)
.+
T Consensus 184 ~i 185 (487)
T TIGR02121 184 FV 185 (487)
T ss_pred HH
Confidence 55
No 81
>PRK10484 putative transporter; Provisional
Probab=90.19 E-value=21 Score=35.60 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=57.5
Q ss_pred cCccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588 10 SYFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL 88 (324)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l 88 (324)
+|-.-..|+.+++-..+.+..+.+++ ..++.|-. ..+.|+...... ............++.+-.++. +..|-.|.
T Consensus 31 ~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~-~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r~--~~~T~~e~ 106 (523)
T PRK10484 31 DGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQ-AYASGMSVMAWE-VTAAIALIILALIFLPRYLKS--GITTIPDF 106 (523)
T ss_pred hhheecCCCCchHHHHHHHHHHHhhHHHHhcchHH-HHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--CCccHHHH
Confidence 33344457778888888888887775 58889987 777786421111 111111112233333333333 34688999
Q ss_pred HHHHhCCCcchhHHHHHHHHHH
Q 020588 89 AGHIYGRRAYALTWGLQYVNLF 110 (324)
Q Consensus 89 ~~~~~G~~g~~~v~~~~~~~~~ 110 (324)
-++-||++.+.+......+...
T Consensus 107 l~~Ryg~~~~~~~~~~~~i~~~ 128 (523)
T PRK10484 107 LEERYDKTTRRIVSILFLIGYV 128 (523)
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 9999999888776665444433
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=89.98 E-value=1.1 Score=44.52 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=71.1
Q ss_pred ccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHH----HHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIV----SLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~----~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
..+.+...-|=..++-|+|-+-=|.- .+|.||.+|.+-+++-+++ -.|...++ -.|+.| .|-.|++++.+
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~--SvR~~G---~Si~~ia~~~l 124 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLML--SVRHGG---KSIGEIAGKYL 124 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheee--eeccCC---ccHHHHHHHHh
Confidence 45666677777889999999999998 9999999999887653322 22222211 122333 38999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALK 125 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~ 125 (324)
|++.+.+..+...+..+-..........+.+.
T Consensus 125 G~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 125 GRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888887777666555555544444443
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.49 E-value=6.3 Score=38.34 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=51.4
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC 151 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~ 151 (324)
-..+++++.+|+.|+.+..+.+.+-|+-++++-....+|.++...+ ..+.+.|..+++.+-
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kisY~~~v~i~~i~S 322 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KISYKVWVIIFTIFS 322 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999999988743 356677777665544
No 84
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=86.58 E-value=33 Score=33.42 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=65.0
Q ss_pred ccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCc--ccccHHHHHHHHh
Q 020588 18 LDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGK--RHIRYRDLAGHIY 93 (324)
Q Consensus 18 ~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~-~~~~--~~~sy~~l~~~~~ 93 (324)
-.|-.+-.+.-+++.+|.| +.-.||- ..+.|=. +.++.-++..+..=--.++.|-.- +.++ ...+|+.++.
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~-~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~--- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYM-AGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP--- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeE-eeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---
Confidence 3445555666789999988 9999998 7666632 223322333444433445555422 2122 1235666555
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 020588 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW 132 (324)
Q Consensus 94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~ 132 (324)
++....+.....+..+..+.-|.++.|=.+..+..+..
T Consensus 83 -~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t 120 (439)
T COG0733 83 -KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLT 120 (439)
T ss_pred -CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566677777888898888888887776643
No 85
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=85.59 E-value=33 Score=32.39 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHH
Q 020588 71 IAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFV 150 (324)
Q Consensus 71 L~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~ 150 (324)
-.|....+|+ +..|..++-+||+..+...+...+.......+-+...+.-++.++ +++...+.++.++.
T Consensus 33 ~~R~~~~Tg~---~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~ 101 (358)
T PF01566_consen 33 AARLGIVTGK---GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVI 101 (358)
T ss_pred HHHHhhhcCC---ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHH
Confidence 3333334554 568888888999988888888888777777776666666665442 23445555555554
Q ss_pred HHHHHhc--CCCCcchHHHHHH
Q 020588 151 CALFAIG--IPNLSALGVWLGV 170 (324)
Q Consensus 151 ~~l~l~~--~~~l~~l~~~S~~ 170 (324)
+ +.+.. .++.|.+..+...
T Consensus 102 ~-~~ll~~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 102 A-ILLLWLSSGGYRRLERILKV 122 (358)
T ss_pred H-HHHHHHHhccchHHHHHHHH
Confidence 4 23323 4567777666553
No 86
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=84.35 E-value=17 Score=35.44 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=80.7
Q ss_pred ccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhhcCcccccHHH--
Q 020588 14 HLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVG---LIIATIVSLNANALIAKLHEFGGKRHIRYRD-- 87 (324)
Q Consensus 14 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~---li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~-- 87 (324)
++++..|.+|+.+.-+.+.+|+| +-+.+-| .+..|= -+++- ..+.|..+-|.=-.|.+-+++.++ +-+|.+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtA-I~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATA-IALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCcCCh
Confidence 45556699999999999999999 8888888 888771 12221 223455666666666666553322 223443
Q ss_pred --HHHHHhCC-CcchhHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588 88 --LAGHIYGR-RAYALTWGLQYVNLFM--INTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 88 --l~~~~~G~-~g~~~v~~~~~~~~~g--~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~ 162 (324)
--++-+|. |...+.. ...+..+| .+....-..++.++.- + +.+...-.++.+++. -+..+..+|
T Consensus 135 ~yYi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~a---f-----~~~~~~~gi~la~l~--~~VI~GGi~ 203 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANA---F-----GIPPLVTGIVLALLV--ALVIFGGIK 203 (452)
T ss_pred HHHHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHh---c-----CCcHHHHHHHHHHHH--HHHHHcchH
Confidence 23344442 2233333 22222222 2222222222222211 2 122222222333322 333456778
Q ss_pred chHHHHHH-HHHHHHHHHHHHhhhhh
Q 020588 163 ALGVWLGV-STVLSTIYIVIAIWLSV 187 (324)
Q Consensus 163 ~l~~~S~~-~~~~~~~~~~i~i~~~~ 187 (324)
+++.++.. --++...|+...+++-+
T Consensus 204 rIa~v~~~vVPfMA~~Yi~~~~~Ii~ 229 (452)
T COG1115 204 RIAKVSSKVVPFMAILYVLVALVIIV 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877765 34566666665555433
No 87
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.20 E-value=2.5 Score=43.15 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=27.2
Q ss_pred hhccccCchhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588 230 IQATIRQPVVENMMKALYFQFSVGVLPMFAVTFV 263 (324)
Q Consensus 230 i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~ 263 (324)
.-.|+|+|| |..+|....+.+..+.+|+++.+.
T Consensus 316 MSgELk~PS-kSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 316 MSGELKAPS-KSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred cCccccCcc-ccCCccchHHHHHHHHHHHHHHHH
Confidence 346789998 578999999999999999887664
No 88
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=77.13 E-value=37 Score=32.84 Aligned_cols=76 Identities=9% Similarity=0.183 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcch
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSAL 164 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l 164 (324)
..+..++.||+.|+.+..+++.+-|+-+++.-+...+|.++++.. ..+-+.|..+++... ...+-+ .++++
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p-------~~SY~~~v~if~i~s-flvan~-GL~~I 335 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP-------KLSYKTWVIIFTLIS-FLVANL-GLEQI 335 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHH-HHHHHh-hHHHH
Confidence 677899999999999999999999999999999999999988753 356677877776654 222222 34454
Q ss_pred HHHHH
Q 020588 165 GVWLG 169 (324)
Q Consensus 165 ~~~S~ 169 (324)
-..|.
T Consensus 336 i~isv 340 (431)
T COG1114 336 IKISV 340 (431)
T ss_pred HHHHH
Confidence 44544
No 89
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=71.78 E-value=45 Score=32.66 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhc
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG 157 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~ 157 (324)
-...+++.+|++|+.+..+.+.+.++-++++-....++.++..+ +.+.+.|..+++++. .+++.
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~--------~isY~~~v~i~~l~S-~~lSn 330 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV--------PLSYRTLVFILGGFS-MVVSN 330 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCcHHHHHHHHHHHH-HHHHH
Confidence 45578899999999999999999999999999999888887653 245566766665554 34443
No 90
>TIGR00909 2A0306 amino acid transporter.
Probab=66.66 E-value=1.2e+02 Score=28.97 Aligned_cols=46 Identities=7% Similarity=-0.204 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~ 129 (324)
...++.++..|+++.+++.+...+..++.+.+.+...+..+....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888899999999999999999999999888888877654
No 91
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=60.99 E-value=55 Score=33.15 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=65.2
Q ss_pred cceeehhhhh-hhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh----hcCcccccHHHHHHHH
Q 020588 19 DSWFQVGFVL-TTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYRDLAGHI 92 (324)
Q Consensus 19 ~s~~~~~~~l-~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~----~~~~~~~sy~~l~~~~ 92 (324)
=+|++.+|.= .=.+-|. =.|-++|- ..|.|...+++++..+..++.-|..=.+-... +.|. .|-=++ +.
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wi-vgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis-~s 104 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWI-VGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLIS-RS 104 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhhe-eecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEE-ec
Confidence 3666666522 1123343 36789998 99999999999888877777666544333222 1221 233333 45
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLF 131 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~ 131 (324)
+|+...--..+.-..-+-=.|.-|++..++.+.++++.+
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE 143 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 666544333443333333355668999999999998764
No 92
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=60.02 E-value=1.7e+02 Score=28.22 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=30.4
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i 127 (324)
+-.|+.++-++|+.++...+...+...++...-+...+.-++.+
T Consensus 65 ~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 65 DLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred CHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999988877666666555666555555555555443
No 93
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=59.25 E-value=1.6e+02 Score=29.21 Aligned_cols=45 Identities=16% Similarity=-0.094 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
-.|-+++.+|.+. |.+.+++.+.++|..-+.+...+..+....+.
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~are 319 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGARE 319 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc
Confidence 3567888899888 99999999999999888777777777665554
No 94
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=53.40 E-value=2.1e+02 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
...++++..|+++.+++.+...+..+++..+.+...+..+..+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 6678888889999999999999999999999999999999887764
No 95
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=52.24 E-value=1.5e+02 Score=30.08 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=48.1
Q ss_pred ccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh----hhcCcccccHHHHHH
Q 020588 16 EMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLH----EFGGKRHIRYRDLAG 90 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~----~~~~~~~~sy~~l~~ 90 (324)
.|+..|+.....+..+.+|++ ++++|.- ..+.|.-.... .+.......++.... .+.+-. ..||-+ +
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e-~~~~G~~~~~~-----~~~~l~~~~~~~~~f~Pvf~~~~v~-~~~eYl-~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGE-GYAYGIQYWFF-----EWNALLSVLLLGWIFIPVFYRLGVT-TMYEYL-E 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchH-HHHHHHHHHHH-----HHHHHHHHHhhheEEEEEEEecCee-ehhHHH-H
Confidence 356678888899999999975 8999988 77777532111 111112222222211 012211 235554 4
Q ss_pred HHhCCCcchhHHHHHHHHHH
Q 020588 91 HIYGRRAYALTWGLQYVNLF 110 (324)
Q Consensus 91 ~~~G~~g~~~v~~~~~~~~~ 110 (324)
+-||+..|.+..+...+..+
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~ 135 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIF 135 (585)
T ss_pred HHhcccchhhHHHHHHHHHH
Confidence 55777777666666555544
No 96
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=48.66 E-value=74 Score=32.70 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=59.4
Q ss_pred ceeehhhhhhhcccccc-ccchhhhhhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588 20 SWFQVGFVLTTGINSAY-VLGYPGTVMVPLG---WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (324)
Q Consensus 20 s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G---~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~ 95 (324)
+...-.+..++-.+|-| +.-.|+.+.++.| +++=+++++++|.=..|--..+.+-+.. |. ...++.++-..=|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~-g~-v~~wrri~Pif~G- 115 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ-GP-VSVWRRICPIFKG- 115 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC-Ch-HHHHHHhChHhcC-
Confidence 55566778889999988 7889998455555 3444555555554444444444444332 21 1123333322112
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 020588 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW 132 (324)
Q Consensus 96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~ 132 (324)
+.....+...-..+-|.++.+-.+..++.++.
T Consensus 116 -----vG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~ 147 (629)
T KOG3660|consen 116 -----VGWASVVISALLAIYYIVILAWALYYLFSSFT 147 (629)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22233333333477888888888888887754
No 97
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=48.27 E-value=2.9e+02 Score=27.48 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH-HHHHhcCCCCcc
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSA 163 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~-~l~l~~~~~l~~ 163 (324)
|.-+.++.-|+. +.++++...+...+....-+-.....++.-++...+ -+.+......+..++. +.-.+....+++
T Consensus 164 ~pl~g~~~~g~~-g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G--i~~~~~~~~~ii~~~~~i~~~S~~~Gl~k 240 (485)
T PF02028_consen 164 YPLLGDRINGPL-GKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG--IPNTFGLQIIIIIVITVIFTISAVSGLDK 240 (485)
T ss_dssp HHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SSSTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhcCCcccCcc-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455444433 456666666666555555555555566655555332 1112222222211111 123333445644
Q ss_pred -hHHHHHHHHHHHHHHHHHH
Q 020588 164 -LGVWLGVSTVLSTIYIVIA 182 (324)
Q Consensus 164 -l~~~S~~~~~~~~~~~~i~ 182 (324)
+|+.|-+.....+...+.+
T Consensus 241 GIk~LS~~n~~l~~~ll~~v 260 (485)
T PF02028_consen 241 GIKRLSNINVYLAFALLLFV 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888887665554444333
No 98
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=46.01 E-value=37 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhc
Q 020588 234 IRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAY 268 (324)
Q Consensus 234 m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~f 268 (324)
-++|+++.+.+.... +.+-.+++|++||...
T Consensus 20 ~~KPd~~Ef~~iak~----t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 20 CKKPDLEEYLKVAKV----TGIGIIIVGIIGYIIK 50 (61)
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 478888888876553 3344567788888653
No 99
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=45.38 E-value=3.2e+02 Score=27.19 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=51.5
Q ss_pred eehhhhhhhcccccc-ccchhhhhhhccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCc
Q 020588 22 FQVGFVLTTGINSAY-VLGYPGTVMVPLGWI---AGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA 97 (324)
Q Consensus 22 ~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i---~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g 97 (324)
.+-.+..++..+|.| +.-.||-..++.|.. +=.+.++++|.=..+.=..+.|-.+. |. ..-|++++.+.
T Consensus 8 ~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~-~~-~~~~~~~~p~~----- 80 (523)
T PF00209_consen 8 IGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS-GP-IGAWKRLCPIF----- 80 (523)
T ss_dssp HHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TS-HHHS-HHHHHH-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccccc-----
Confidence 344566678899987 999999834444421 22222222333333333334444332 22 12355554432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 98 ~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
| -+.....+..+..++.|.++.+-.+..+..+
T Consensus 81 ~-giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s 112 (523)
T PF00209_consen 81 K-GIGYAMVLISFLIAIYYSVIVAWALYYFFQS 112 (523)
T ss_dssp H-THHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 2 2455555666667777888888777766654
No 100
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=45.21 E-value=38 Score=23.40 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=20.3
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 234 IRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 234 m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
-++|+++.+.++... +.+-.+++|++||..
T Consensus 24 ~~KPd~~Ef~~ia~~----~~iG~~i~G~iGf~I 53 (61)
T PRK09400 24 ARKPTREEFLLVAKV----TGLGILLIGLIGFII 53 (61)
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 478888888876554 334456778888764
No 101
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=43.96 E-value=3.2e+02 Score=26.67 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=40.7
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
...++.+..+|+++..++.+...+..+|+..+++...++.+..+-+.
T Consensus 265 ~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard 311 (468)
T TIGR03810 265 SMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD 311 (468)
T ss_pred hHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36778888999999999999999999999999999998888776543
No 102
>PRK00701 manganese transport protein MntH; Reviewed
Probab=43.07 E-value=3.3e+02 Score=26.62 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=33.3
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i 127 (324)
+..|+.++-+||+..++..+...+.+.++.++-++..+.-++.+
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998888877777777777777666666555543
No 103
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=41.92 E-value=3.4e+02 Score=26.43 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=66.9
Q ss_pred cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHH-HHHhhhcCcccccHHHHHHHHhCCCc
Q 020588 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALI-AKLHEFGGKRHIRYRDLAGHIYGRRA 97 (324)
Q Consensus 19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL-~~~~~~~~~~~~sy~~l~~~~~G~~g 97 (324)
....+-.+....+.+|.|=++--...=++.||-+...+++ .-+..+-...+ .|.--.+|+ +..|..++-++|+.
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill--s~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~~~~ 91 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL--SNLMAYILQELSARLGIVTGK---GLAEAIRERYLPGL 91 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHccchH
Confidence 4555566666677777765544333246666644333332 22333333322 111113554 46777777899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020588 98 YALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (324)
Q Consensus 98 ~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~ 128 (324)
.++..+...+....++++-.+..+--++-++
T Consensus 92 ~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 92 GILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999888887663
No 104
>PRK09950 putative transporter; Provisional
Probab=39.91 E-value=4e+02 Score=26.69 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHhCCC----cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 80 KRHIRYRDLAGHIYGRR----AYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 80 ~~~~sy~~l~~~~~G~~----g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
++..+.++..+-.+|++ .+.++++...+...+....-+=.....++.-++.
T Consensus 164 ~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~ 218 (506)
T PRK09950 164 NKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSA 218 (506)
T ss_pred CCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34467888888888854 2456676666655554444444455555555444
No 105
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=33.34 E-value=38 Score=21.93 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhcCCCcc
Q 020588 244 KALYFQFSVGVLPMFAVTFVGYWAYGNSSS 273 (324)
Q Consensus 244 ~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 273 (324)
.+..+++.+..++-..+|..-|-+||+..+
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 355556666666666667777888887543
No 106
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=33.20 E-value=2.6e+02 Score=23.14 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccc
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIF 309 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~ 309 (324)
|+.+|.+....-....+-.++|+..-..+.++. ++-+-++-.+|+--++.+++.+|-+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 556677777776666666677775555554443 33233344688888999999999999999999997
No 107
>PTZ00478 Sec superfamily; Provisional
Probab=32.53 E-value=71 Score=23.41 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=20.7
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 232 ATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 232 ~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
+.-++|+++.+.++... +.+-++++|++||..
T Consensus 35 krctKPdrkEf~kiaka----t~iGf~imG~IGy~I 66 (81)
T PTZ00478 35 RKCTKPDAKEYTNIAYA----CSVGFFIMGFIGYSI 66 (81)
T ss_pred HHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 34578888887775442 334456678888864
No 108
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.71 E-value=2e+02 Score=25.29 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccc
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIF 309 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~ 309 (324)
|+..|.+....-.......++|+..-..+-++.++.+-+-++-.+|+--++.+++.++.+..+..+..|.
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667776666666666677655444555555455444456789988999999999999998888885
No 109
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=31.02 E-value=4.9e+02 Score=25.05 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=31.3
Q ss_pred cHHHHHHHH--hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020588 84 RYRDLAGHI--YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (324)
Q Consensus 84 sy~~l~~~~--~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~ 128 (324)
...++.++. +|+++..++.+...+..+|...+++...+..+....
T Consensus 265 p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~a 311 (445)
T PRK11357 265 PISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMA 311 (445)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456666653 787777777777777778887777776666665543
No 110
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=30.74 E-value=4.9e+02 Score=25.37 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=51.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhh--hc-Cccccc-HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 020588 48 LGWIAGVVGLIIATIVSLNANALIAKLHE--FG-GKRHIR-YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQA 123 (324)
Q Consensus 48 ~G~i~g~i~li~~~~~~~yt~~lL~~~~~--~~-~~~~~s-y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~ 123 (324)
.|++...-.++=.-++|..|...++-.-. .. +....+ ..+.-+..+|+++.+++.+++.++-|.+.+++.-...++
T Consensus 254 QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~ 333 (416)
T PF01235_consen 254 QGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKC 333 (416)
T ss_pred HeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543333333334466667766655421 11 111112 233444457889999999999999999999999999999
Q ss_pred HHHHH
Q 020588 124 LKAAF 128 (324)
Q Consensus 124 l~~i~ 128 (324)
++.++
T Consensus 334 ~~yl~ 338 (416)
T PF01235_consen 334 AEYLF 338 (416)
T ss_pred HHHHc
Confidence 98875
No 111
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=30.59 E-value=5.2e+02 Score=25.20 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020588 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (324)
Q Consensus 85 y~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~ 129 (324)
..+++++.+|+++..++.+...+..+|+..+++...+..+..+-+
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999888888876643
No 112
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=30.38 E-value=84 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=20.6
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhc
Q 020588 234 IRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAY 268 (324)
Q Consensus 234 m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~f 268 (324)
-|+|+.+.+.++..+. .+-.+.+|.+||..+
T Consensus 25 arKP~~eEy~~~aKi~----~~Gi~liG~IGfiI~ 55 (65)
T COG2443 25 ARKPDWEEYSKIAKIT----GLGILLIGIIGFIIY 55 (65)
T ss_pred HhCCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4688887777766642 333467788888754
No 113
>PRK11387 S-methylmethionine transporter; Provisional
Probab=29.38 E-value=5.4e+02 Score=25.05 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=38.8
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~ 129 (324)
..+.++.++..|+++..++.+...+..+++..+.+...+..+..+.+
T Consensus 275 ~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ar 321 (471)
T PRK11387 275 SPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSN 321 (471)
T ss_pred ChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 46888888888888888999999999999988888877777776654
No 114
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.53 E-value=2.7e+02 Score=22.65 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccc
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIF 309 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~ 309 (324)
|+..|.+....-....+-.++|+..-..+.++ .++-+-++...|+--++.+++.++.+..+..+.+|-
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455677766666666666777554445443 233233345788888899999999999999988886
No 115
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.23 E-value=3.5e+02 Score=22.09 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhccccc
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFH 310 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~ 310 (324)
|+.+|.+....-.......++|+..-..+.++. +.-+.++-.+|+--++-+++.++.+..+..+..|..
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~ 105 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGA 105 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556677777777777777777875444444443 332333346888888889999999999888888873
No 116
>CHL00020 psbN photosystem II protein N
Probab=26.24 E-value=40 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhcCCCcc
Q 020588 245 ALYFQFSVGVLPMFAVTFVGYWAYGNSSS 273 (324)
Q Consensus 245 ~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 273 (324)
+..+++.+..++...+|..-|-+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 34445555666666666666888886543
No 117
>PHA02764 hypothetical protein; Provisional
Probab=25.90 E-value=1.5e+02 Score=27.85 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=39.0
Q ss_pred cceeehhh-hhhhccccccccchhhhhhhcc--c--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588 19 DSWFQVGF-VLTTGINSAYVLGYPGTVMVPL--G--WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (324)
Q Consensus 19 ~s~~~~~~-~l~~~~iG~GiL~LP~a~~~~~--G--~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~ 93 (324)
.+.+.+.+ |+.....|.++ +.|+- ++.. | .+.+.++-.+.+.....|.-.+.....+.|.. |.= .++++
T Consensus 14 vs~lDAF~~Nl~~m~~Gi~I-s~~~l-~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGd---YVY-ISRAF 87 (399)
T PHA02764 14 FNILDIFSINLLYMGILSGI-SYPLF-VSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGD---YAY-IRTAF 87 (399)
T ss_pred ccHHHHHHHHHHhhccchhH-HHHHH-HhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce---EEE-hHHhh
Confidence 34444554 77776666654 44541 1111 2 11222222222222223333343343344442 222 55689
Q ss_pred CCCcchhHHHHHHHH
Q 020588 94 GRRAYALTWGLQYVN 108 (324)
Q Consensus 94 G~~g~~~v~~~~~~~ 108 (324)
||+...+++......
T Consensus 88 GP~~GFLvG~a~WLt 102 (399)
T PHA02764 88 SSKFYTIFGISLWLT 102 (399)
T ss_pred CccHHHHHHHHHHHH
Confidence 998887766665543
No 118
>PF15562 Imm10: Immunity protein 10
Probab=24.80 E-value=1.5e+02 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=16.7
Q ss_pred HHhCCCcchhHHHHHHHHHHHHHH
Q 020588 91 HIYGRRAYALTWGLQYVNLFMINT 114 (324)
Q Consensus 91 ~~~G~~g~~~v~~~~~~~~~g~~i 114 (324)
+.+||++.++......+..++.++
T Consensus 35 ~~fGr~~~Ri~~~ilg~i~I~~~~ 58 (61)
T PF15562_consen 35 ENFGRKGARIFYGILGIIIIICSV 58 (61)
T ss_pred HHcCCcceeehHHHHHHHHHHHHH
Confidence 789999987777665555554443
No 119
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=24.58 E-value=7.3e+02 Score=24.93 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=105.8
Q ss_pred ceeehhhhhhhccccccccchhhhhhhccchh--HHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccccHHHHHHHHhCCC
Q 020588 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI--AGVVGLIIATIVSLNANALIAKLHEFGGK-RHIRYRDLAGHIYGRR 96 (324)
Q Consensus 20 s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i--~g~i~li~~~~~~~yt~~lL~~~~~~~~~-~~~sy~~l~~~~~G~~ 96 (324)
||++-..-=....++++.--+..+ .-+.|+- -+++...+- ...+...+.-.. +.|. -..++.-..|..||=+
T Consensus 57 s~~~~~~fW~~~~fnv~Tw~ia~s-~l~lGLswwq~~~tv~vG---~~~~~~f~~lns-~~G~~yhIsFpv~sR~sFGiy 131 (572)
T KOG2466|consen 57 SWWNYIAFWLADSFNVNTWMIAGS-ALELGLSWWQTWITVWVG---YLFTAIFLVLNS-RPGSDYHISFPVLSRSSFGIY 131 (572)
T ss_pred cHHHHHHHHHhccccccceeehhh-HHhccCCHHHHHHHHHHH---HHHHHHHHHHcc-CCCcccccceeeeeeeehhhh
Confidence 555544333344555555555555 5566642 233333221 112222222222 2333 2357888888889877
Q ss_pred cc---hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----cCCC----CCCchhhH--HHHHHHHHHHHhcCCCCc
Q 020588 97 AY---ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW-----KDDH----TMKLPYFI--AIAGFVCALFAIGIPNLS 162 (324)
Q Consensus 97 g~---~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~-----~~~~----~~~~~~~~--~i~~~~~~l~l~~~~~l~ 162 (324)
+. .+..+.....-+|.. .=++|+.++-++++.. .+++ ..++.+|+ +++.++. .|..++| .+
T Consensus 132 gS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s-~~~~~~~-p~ 206 (572)
T KOG2466|consen 132 GSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVAS-LPFYWFP-PY 206 (572)
T ss_pred HhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHh-hheeecc-HH
Confidence 64 333333333333321 1234555555554421 1221 24445554 3444444 3554554 45
Q ss_pred chHHHHHHHHHHHH--HHHHHHhhhhhccCccCC-CCcCCCCCCcchhhhhHHhhhhHHHHHhc--cCchhhhhccccCc
Q 020588 163 ALGVWLGVSTVLST--IYIVIAIWLSVRDGLKNP-ARDYSIPGTTATKIFESIGACANLVFAFN--TGMLPEIQATIRQP 237 (324)
Q Consensus 163 ~l~~~S~~~~~~~~--~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~faf~--h~~~~~i~~~m~~p 237 (324)
++|++=...++... .+..+++.+.-.++..+- +.+....+ ....|.++.++.--.=.|. ....|..-+--|+|
T Consensus 207 ~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~g--s~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ksp 284 (572)
T KOG2466|consen 207 KIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSG--SAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAKSP 284 (572)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccc--cchhHHHHHHHHHHHhccchhhccCchhHhhcCCC
Confidence 55555433222111 122222222222332110 00111111 1222444443332222222 35567766666777
Q ss_pred hhhhHHHHHHH--HHHHHHHHHHHHhhHHhhhcCCCcc--cccccCc
Q 020588 238 VVENMMKALYF--QFSVGVLPMFAVTFVGYWAYGNSSS--SYLLNNV 280 (324)
Q Consensus 238 s~~~~~~~~~~--s~~~~~~~Y~~~g~~gy~~fG~~~~--~~il~~~ 280 (324)
......+.+.+ .+.+...+=++++..++-.||.+.- =++++++
T Consensus 285 ~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 285 NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 44444443322 2222222223345557888998753 3455554
No 120
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=23.55 E-value=7.2e+02 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=26.6
Q ss_pred cccccHHHHHHHHhCCC----cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 80 KRHIRYRDLAGHIYGRR----AYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 80 ~~~~sy~~l~~~~~G~~----g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
++..+.++..+-.+|++ .+.++++...+...+....-+=+...+++.-++.
T Consensus 117 ~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~ 171 (453)
T TIGR00842 117 GLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSA 171 (453)
T ss_pred CCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456788777777754 2345555554444433333333444444444443
No 121
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=23.25 E-value=57 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhHHhhhcCCCcc
Q 020588 247 YFQFSVGVLPMFAVTFVGYWAYGNSSS 273 (324)
Q Consensus 247 ~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 273 (324)
.+++.+..++-.++|..-|-+||...+
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 344445555556666667888886543
No 122
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=22.86 E-value=6.9e+02 Score=24.03 Aligned_cols=46 Identities=28% Similarity=0.196 Sum_probs=35.2
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~ 128 (324)
....++.+..+|+++..++.+...+..++...+++...+.....+-
T Consensus 260 ~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a 305 (445)
T PRK10644 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999988888877778888887777776666665543
No 123
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.71 E-value=2.5e+02 Score=18.80 Aligned_cols=33 Identities=3% Similarity=0.044 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcc
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSS 273 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 273 (324)
..++-++.. ..+..++|++.|+.=+..+.++.+
T Consensus 20 NsF~fViik-~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 20 NSFWFVIIK-SVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHhhhccCccc
Confidence 345555544 447789999999987776666554
Done!