Query 020588
Match_columns 324
No_of_seqs 112 out of 1167
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.4 2.9E-11 1E-15 115.7 19.4 249 13-271 4-253 (445)
2 3gia_A Uncharacterized protein 99.1 6.6E-09 2.2E-13 99.3 19.8 240 15-269 4-248 (444)
3 4djk_A Probable glutamate/gamm 98.7 1.4E-06 4.8E-11 84.6 21.4 250 10-271 4-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.2 7.3E-05 2.5E-09 72.8 19.6 149 16-173 24-173 (501)
5 3dh4_A Sodium/glucose cotransp 94.8 1.3 4.5E-05 42.9 17.4 142 16-170 19-162 (530)
6 2xq2_A Sodium/glucose cotransp 93.3 5.1 0.00018 39.3 18.3 142 16-170 48-191 (593)
7 2a65_A Leutaa, Na(+):neurotran 91.5 11 0.00036 36.5 20.9 109 20-132 10-124 (519)
8 2wsw_A BCCT family betaine/car 51.7 79 0.0027 30.2 9.8 90 85-177 181-273 (509)
9 3gia_A Uncharacterized protein 47.0 94 0.0032 28.3 9.6 47 84-130 259-305 (444)
10 3l1l_A Arginine/agmatine antip 44.7 1.8E+02 0.0061 26.3 14.8 48 83-130 260-307 (445)
11 3mp7_B Preprotein translocase 42.8 27 0.00091 23.2 3.5 30 234-267 22-51 (61)
12 2ww9_B Protein transport prote 35.3 41 0.0014 23.6 3.7 32 232-267 37-68 (80)
13 1rh5_B Preprotein translocase 34.3 40 0.0014 23.3 3.5 32 233-268 25-56 (74)
14 2wwb_B SEC61gamma, protein tra 30.6 29 0.001 23.5 2.2 31 233-267 24-54 (68)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.37 E-value=2.9e-11 Score=115.73 Aligned_cols=249 Identities=13% Similarity=0.010 Sum_probs=150.5
Q ss_pred cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (324)
Q Consensus 13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~ 92 (324)
.+++|+.+.++..+..+++++|+|++.+|.. ..+.|. .+++..++.++.+..+.....|...+..+ .-+.-+.+++.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhH
Confidence 3466788999999999999999999999998 888886 47778888888888888888887554322 12455667899
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (324)
Q Consensus 93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~ 172 (324)
+||+.+++......+.......++....++.+...++. ...+...+.+....+.+....-.+..|..+++..+..
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----GGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----ccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 99999988888877776666666666655555432111 0001112222111111111111233455555544432
Q ss_pred HHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHH
Q 020588 173 VLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFS 251 (324)
Q Consensus 173 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~ 251 (324)
...+...++.++..+.+...+ ....+.......++.++..++....|+|. ........+|+|||+ |+.+|+...+..
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-r~ip~a~~~~~~ 233 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIGGVL 233 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCC-CCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChh-hcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-ccccHHHHHHHH
Confidence 222222222222222221110 11111111111224467788889999997 888888999999995 689999999999
Q ss_pred HHHHHHHHHhhHHhhhcCCC
Q 020588 252 VGVLPMFAVTFVGYWAYGNS 271 (324)
Q Consensus 252 ~~~~~Y~~~g~~gy~~fG~~ 271 (324)
++.++|+..........+.+
T Consensus 234 ~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 234 IAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhcCCHH
Confidence 99999999877766666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.09 E-value=6.6e-09 Score=99.35 Aligned_cols=240 Identities=12% Similarity=0.023 Sum_probs=142.6
Q ss_pred cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
++|+.+.++..+..+++++|+|++.+|..+....|- .+++..++.+.++..+...+.|...+..+. -..-+.+++.+|
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~-Gg~y~~~~~~~G 81 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSN-AGPIAFIHKAIG 81 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-TTHHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CcHHHhHHHHhC
Confidence 567889999999999999999999988552566665 677778888888888888888875532221 234567888999
Q ss_pred CC--cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH--HHHHhcCCCCcchHHHHHH
Q 020588 95 RR--AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC--ALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 95 ~~--g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~--~l~l~~~~~l~~l~~~S~~ 170 (324)
|+ +.+ +.....+.....+..+....++.+...+ . .. ....+..+.+.++ ++...-.+..|..+++..+
T Consensus 82 ~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~--~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 153 (444)
T 3gia_A 82 DNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLI---N--AP--INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFF 153 (444)
T ss_dssp SSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT---T--CC--CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CC--CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 97 232 2333344444445555555556555432 1 11 1122211111111 0111122334555555444
Q ss_pred HHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHH
Q 020588 171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQ 249 (324)
Q Consensus 171 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s 249 (324)
.....+...++.++..+.+... + +.. +..++.++.+++.+.....|+|. +......-+|+|||+ |+.+|+...+
T Consensus 154 ~~~~~i~~~~~~ii~~~~~~~~--~-~~~-~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~-r~ip~ai~~~ 228 (444)
T 3gia_A 154 IVLVKLLILGLFIFAGLITIHP--S-YVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK-KNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCG--G-GTS-CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCh--h-hcC-CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc-cchhHHHHHH
Confidence 3222222222222222222111 1 111 11123344567788888899997 888888889999995 5799999999
Q ss_pred HHHHHHHHHHHhhHHhhhcC
Q 020588 250 FSVGVLPMFAVTFVGYWAYG 269 (324)
Q Consensus 250 ~~~~~~~Y~~~g~~gy~~fG 269 (324)
..++.++|+..........+
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99999999987766544444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.72 E-value=1.4e-06 Score=84.61 Aligned_cols=250 Identities=10% Similarity=-0.016 Sum_probs=129.6
Q ss_pred cCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhh--hcCcccccHH
Q 020588 10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHE--FGGKRHIRYR 86 (324)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~--~~~~~~~sy~ 86 (324)
+++.+.+|+.+.++..+..++.++| +.++|. ....|.. +++..++.+.+. ..+...+.|... .... -..-
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~--GG~y 76 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEE--GGVF 76 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHH
T ss_pred cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCC--CChh
Confidence 3445566788999999888888886 567774 4667753 333333333332 235666667544 2211 2345
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCC-chhhHHHHHHHHHHHHhcCCCCcchH
Q 020588 87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK-LPYFIAIAGFVCALFAIGIPNLSALG 165 (324)
Q Consensus 87 ~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~-~~~~~~i~~~~~~l~l~~~~~l~~l~ 165 (324)
..+++.+||+.+++......+.......++....++.+...+ ..++.+.+ ...+.+...++.++...-.+..|..+
T Consensus 77 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~ 153 (511)
T 4djk_A 77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIL---KWPALNEDPITKTIAALIILWALALTQFGGTKYTA 153 (511)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTT---TCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred hhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 578889999988888877777766655555555555554321 01111111 11222221121111122223456666
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhhc---cCccCCCCcCCCCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh
Q 020588 166 VWLGVSTVLSTI-YIVIAIWLSVR---DGLKNPARDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV 239 (324)
Q Consensus 166 ~~S~~~~~~~~~-~~~i~i~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~ 239 (324)
++..+.....+. ...+.++..+. .+.. ++.+.+... .+.....+...++....|+|. .......-+|+|||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~- 231 (511)
T 4djk_A 154 RIAKVGFFAGILLPAFILIALAAIYLHSGAP-VAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG- 231 (511)
T ss_dssp HHTHHHHHHTTHHHHHHHHHHHHHHTC-------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc-
Confidence 665543222111 11111222221 1111 000111000 011111233456677899996 888888999999996
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS 271 (324)
Q Consensus 240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~ 271 (324)
|+.+|++..+..++.++|++..+.-....+++
T Consensus 232 k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 232 RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 68999999999999999999877666665543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.25 E-value=7.3e-05 Score=72.79 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=88.8
Q ss_pred ccccceeehhhhhhhccccccccchhhhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMV-PLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~-~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
+|+.++++-...-.+..++.+...+... .. ..++..+++..++..++....+-++.+.-.+.| .++.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~-~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G---l~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQ-MTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG---INFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHH-HTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC---CCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC---CChhhhhHhhcc
Confidence 3445555444333444444444444433 22 223344555555544444444444444433444 369999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~ 173 (324)
++|..+..+...+.++|-...-....++.+..+++...+.. +...+.++++++. ++... ...+.++++..+...
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~---~~~v~~~i~~~l~-~~~~~-~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFT---NLPLWIVIFGAIQ-VVTTF-YGITFIRWMNVFASP 173 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHH-HHHHT-THHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hHHHHHHHHHHHH-HHHHH-hCHHHHHHHHHHHHH
Confidence 99999999999999999999888899999988876543111 1233445455544 34443 346677766665443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.85 E-value=1.3 Score=42.86 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=73.0
Q ss_pred ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
.|+.+++...+.+..+.+++ .++++|-. ..+.|+........ .+......+..+.+..++. +..|..|.-++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~-~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~--~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHH-HHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT--TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHcC
Confidence 46678888888888888886 58999988 78888643211111 1111112223333333333 34699999999999
Q ss_pred CCcchhHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 95 RRAYALTWGLQYVNL-FMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 95 ~~g~~~v~~~~~~~~-~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
++.|.+..+...+.. +.-+.+-+...+..++.++ +++...-+++.++++ +....+--++...+.-.+
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHH-HHTTC------CCSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhcchHHHHHHHHH
Confidence 988877766543322 2222222333344444331 133333334444433 344444566666666555
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=93.30 E-value=5.1 Score=39.25 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
.|+.+++...+.+..+.+++ ..++.|-. ..+.|+........ .+.........+.+-.++.+ ..|..|.-++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~-~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHH-HHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTT--CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHH-HHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHcc
Confidence 36678888888888887775 57899988 77888642211111 01111111222333333333 3689999998899
Q ss_pred CCcchhHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588 95 RRAYALTWGLQYVN-LFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (324)
Q Consensus 95 ~~g~~~v~~~~~~~-~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~ 170 (324)
++.|.+..+...+. .+.....-+...+..++.++ +++...-+++.++++ .....+--++...+.-.+
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~av~~TD~i 191 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVI 191 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHH-HHHHHTTC---CCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHH-HHHHHhcchHHHHHHHHH
Confidence 88777666554322 22222222333444454442 122233333444443 344455566776666555
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.46 E-value=11 Score=36.48 Aligned_cols=109 Identities=9% Similarity=0.058 Sum_probs=58.1
Q ss_pred ceeehhhhhhhcccccc-ccchhhhhhhccc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588 20 SWFQVGFVLTTGINSAY-VLGYPGTVMVPLG----WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (324)
Q Consensus 20 s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G----~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G 94 (324)
|-.+-.+..+++.+|-| +.-.||- ..+-| +++=++.++++|.=-.+.=..+.|-..+..++ +=-+.-++. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl-~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~--~~i~a~~~l-~ 85 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQ-AAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG--TTPAIFYLL-W 85 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHH-HHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC--SHHHHHHHH-S
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCC--CHHHHHHHh-c
Confidence 33445566788999988 9999998 66655 23333333333332222222233321111111 112222222 2
Q ss_pred CC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 020588 95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW 132 (324)
Q Consensus 95 ~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~ 132 (324)
|+ ....+.....+..+..++-|.++.+-.+..++.++.
T Consensus 86 ~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~ 124 (519)
T 2a65_A 86 RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 124 (519)
T ss_dssp CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 223455566666677788888888887777766653
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=51.69 E-value=79 Score=30.25 Aligned_cols=90 Identities=13% Similarity=-0.034 Sum_probs=44.5
Q ss_pred HHHHH-HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH-HHHHhcCCCC-
Q 020588 85 YRDLA-GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNL- 161 (324)
Q Consensus 85 y~~l~-~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~-~l~l~~~~~l- 161 (324)
|.-++ ++.-|+.|+.+=.+.++...+|..++-=....|.-..+-..++.++. ....+.+..++. +.-.+....+
T Consensus 181 ~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~---~~~qi~ii~vit~~~~~Sa~sGl~ 257 (509)
T 2wsw_A 181 VPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHT---LQLDAIIISCWILLNAICVAFGLQ 257 (509)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66677 78877777755555666666777666544433333333222433322 122222222111 1233344455
Q ss_pred cchHHHHHHHHHHHHH
Q 020588 162 SALGVWLGVSTVLSTI 177 (324)
Q Consensus 162 ~~l~~~S~~~~~~~~~ 177 (324)
|-+|++|-+.....+.
T Consensus 258 kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 258 KGVKIASDVRTYLSFL 273 (509)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777765444443
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=47.03 E-value=94 Score=28.27 Aligned_cols=47 Identities=9% Similarity=-0.132 Sum_probs=38.6
Q ss_pred cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
...++++..+|+++..++.+...+..++...+.+...+..+..+.+.
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46778888889888888888888889998888888877877776654
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=44.73 E-value=1.8e+02 Score=26.30 Aligned_cols=48 Identities=27% Similarity=0.140 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020588 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (324)
Q Consensus 83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 130 (324)
....+++++.+|+++..++.+...+..+++..+++...+..+..+.+.
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 458899999999999999999999999999999998888888777653
No 11
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=42.78 E-value=27 Score=23.19 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=19.6
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 234 IRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 234 m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
-++|+++.+.++... +.+-.+++|++||..
T Consensus 22 ~~KPd~~Ef~~iak~----~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 22 TKKPNWATYKRAAKI----TGLGIILIGLIGMLI 51 (61)
T ss_dssp SCCCCTTHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 478888888876654 233445667777754
No 12
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=35.28 E-value=41 Score=23.56 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=21.3
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 232 ATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 232 ~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
.--++|+++.+.++... +.+-.+++|++||..
T Consensus 37 k~~~KPdr~Ef~~iak~----t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 37 AKCKKPDLKEYTKIVKA----VGIGFIAVGIIGYAI 68 (80)
T ss_dssp HSCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34578988888876554 334456778888864
No 13
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=34.33 E-value=40 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=20.8
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhc
Q 020588 233 TIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAY 268 (324)
Q Consensus 233 ~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~f 268 (324)
--++|+++.+.++... +.+-.+++|++||...
T Consensus 25 ~~~KPdr~EF~~iak~----~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 25 VLKKPTKDEYLAVAKV----TALGISLLGIIGYIIH 56 (74)
T ss_dssp SEECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3478888888876554 2334456688887654
No 14
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=30.62 E-value=29 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=20.5
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588 233 TIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA 267 (324)
Q Consensus 233 ~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 267 (324)
--++|+++.+.+.... +.+-.+++|++||..
T Consensus 24 ~~~KPdr~Ef~~iak~----~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 24 RCTKPDRKEFQKIAMA----TAIGFAIMGFIGFFV 54 (68)
T ss_dssp HCCCCCTHHHHHHHHH----SSHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3578888888886654 233345678888874
Done!