BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020589
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EBR|A Chain A, Solution Structure Of The Fourth Zf-Ranbp Domain From
           Human Nuclear Pore Complex Protein Nup153
          Length = 47

 Score = 28.1 bits (61), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 285 WSCKFCTLDNSSLSERCLAC 304
           W C+ C + N + S +CLAC
Sbjct: 12  WDCELCLVQNKADSTKCLAC 31


>pdb|2WCZ|A Chain A, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
           Holliday Junction Resolvase From An Archaeal
           Hyperthermophile
 pdb|2WCZ|B Chain B, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
           Holliday Junction Resolvase From An Archaeal
           Hyperthermophile
 pdb|2WIW|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIW|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIZ|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WIZ|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WJ0|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
 pdb|2WJ0|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
           Archaeoglobus Fulgidus Bound To Dna Substrate
          Length = 139

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 58  LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDT 91
           L+    G GAE  + L+ P ++W FFP + +  T
Sbjct: 73  LVTFARGFGAEAYVALKLPRKKWRFFPVQMLERT 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,630,448
Number of Sequences: 62578
Number of extensions: 367503
Number of successful extensions: 641
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 7
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)