BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020589
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
Length = 269
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 9 VWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
+ +V L+ K ++DA +++++A +V +M+++ +KV L EF P + LLG+N+ G+
Sbjct: 29 IQKVAVLQSKPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGS 88
Query: 68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
++ LRLR E+ F P E I+ TMLHEL HN +GPH+ FY DE+ + +G+
Sbjct: 89 KIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGL 148
Query: 128 TGTGKGFDLPGRRLGGFS-----RQPPLSQLRQSALAAAENR-ARHGALLPSGPNRIGGD 181
T G G+RLGG + R P + + + + G+L P G
Sbjct: 149 YDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGI------ 199
Query: 182 SSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDA 229
SSI SP + AA AAERR DD WCG N D + +++ SS +
Sbjct: 200 SSIDRGNSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNISSSLEV 247
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1442.07c PE=4 SV=1
Length = 282
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 26/175 (14%)
Query: 11 EVKALKKIGEDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA-----NPSLLGINI 63
E+ L +D A + LE++ ++ IM H+W V +LSE PA + LG+N
Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNH 172
Query: 64 GGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELM 123
GA ++LRLR +R F Y+ + T++HEL HN +G H++ F++L+ ++ KE D
Sbjct: 173 NQGAHIELRLR-TDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEAD--- 228
Query: 124 AKGITGTGKGFDLPGRRLGGFSRQPPL---------SQLRQSALAAAENRARHGA 169
A + G PG + + P + R LAAAE R + G+
Sbjct: 229 AADLLGK------PGSYVSDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGS 277
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1
Length = 283
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 8 KVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
K+ + A+K D + L+++A PIM++H + V L E N G N G
Sbjct: 34 KIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDE-VAYNAKFWGRNWNKGE 92
Query: 68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
++L LR + W P+E ++D LHELCH GPH+ F+ +R L AKG
Sbjct: 93 CIELVLRDASNRW--LPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGY 150
Query: 128 TGTGK 132
G GK
Sbjct: 151 KGPGK 155
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 264 WQCNMCTLLNQRN--KSVG------NLKGWSCKFCTLDNSSLSERCLAC 304
W+C++C + N+R+ K V K W C C++ N + + +C+AC
Sbjct: 1473 WECSVCLVRNERSAKKCVACENPGKQFKEWHCSLCSVKNEAHAIKCVAC 1521
>sp|Q9UGI0|ZRAN1_HUMAN Ubiquitin thioesterase ZRANB1 OS=Homo sapiens GN=ZRANB1 PE=1 SV=2
Length = 708
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 235 TSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDN 294
T +S R+ + SSG + V + + C N RNK + W+C CT +N
Sbjct: 105 TQCLSQRRTRSPTESPQSSGSGSRPVA--FSVDPCEEYNDRNKLNTRTQHWTCSVCTYEN 162
Query: 295 SSLSERCLACGEWRYSNGPPI 315
+ ++RC+ C R +N I
Sbjct: 163 WAKAKRCVVCDHPRPNNIEAI 183
>sp|A6QP16|ZRAN1_BOVIN Ubiquitin thioesterase ZRANB1 OS=Bos taurus GN=ZRANB1 PE=2 SV=1
Length = 708
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 235 TSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDN 294
T +S R+ + SSG + V + + C N RNK + W+C CT +N
Sbjct: 105 TQCLSQRRTRSPTESPQSSGSGSRPVA--FSVDPCEEYNDRNKLNTRTQHWTCSICTYEN 162
Query: 295 SSLSERCLACGEWRYSNGPPI 315
+ +++C+ C R +N I
Sbjct: 163 WAKAKKCVVCDHPRPNNIEAI 183
>sp|B3R8S4|ASPD_CUPTR Probable L-aspartate dehydrogenase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=nadX PE=3 SV=1
Length = 266
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 30 VAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQIL 89
+A++++ R+ +V++LS A +L +GG EV R+P R W P EQ+
Sbjct: 102 MAERLEAAARRGGTQVQLLSGAIGAIDALAAARVGGLDEVIYTGRKPARAWTGTPAEQLF 161
Query: 90 D 90
D
Sbjct: 162 D 162
>sp|Q7M760|ZRAN1_MOUSE Ubiquitin thioesterase Zranb1 OS=Mus musculus GN=Zranb1 PE=2 SV=1
Length = 708
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 235 TSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDN 294
T +S R+ + SSG + V + + C N RNK + W+C CT +N
Sbjct: 105 TQCLSQRRTRSPTESPQSSGSGSRPVA--FSVDPCEEYNDRNKLNTRTQHWTCSVCTYEN 162
Query: 295 SSLSERCLACGEWRYSNGPPI 315
+ +++C+ C R +N I
Sbjct: 163 WAKAKKCVVCDHPRPNNIEAI 183
>sp|Q0K391|ASPD_CUPNH Probable L-aspartate dehydrogenase OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nadX PE=3
SV=1
Length = 266
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 30 VAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQIL 89
+A++++ R+ +V++LS A +L +GG EV R+P R W P EQ+
Sbjct: 102 MAERLEAAARRGGTQVQLLSGAIGAIDALAAARVGGLDEVIYTGRKPARAWAGTPAEQLF 161
Query: 90 D 90
D
Sbjct: 162 D 162
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 285 WSCKFCTLDNSSLSERCLACGEWRYSN----GPPISTPGPYPGT 324
W C C+L N+S +++C++C SN GPP++ P T
Sbjct: 1356 WHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKT 1399
>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1
Length = 1086
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 281 NLKGWSCKFCTLDNSSLSERCLACG 305
+ WSC CTL N +++ RC ACG
Sbjct: 340 DFTTWSCAKCTLRNPTVAPRCSACG 364
>sp|Q9JLG8|CAN15_MOUSE Calpain-15 OS=Mus musculus GN=Solh PE=1 SV=1
Length = 1095
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 284 GWSCKFCTLDNSSLSERCLACGEWRYSNGPPI 315
GW+C+ CTL N+ ++ C ACG R + P I
Sbjct: 152 GWACQRCTLHNTPVASSCSACGGPRKLSLPRI 183
>sp|P04821|CDC25_YEAST Cell division control protein 25 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC25 PE=1 SV=1
Length = 1589
Score = 32.3 bits (72), Expect = 5.5, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 146 RQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDD 205
R P S+ S L+A+ + A H A SG N +++ SP A A+
Sbjct: 165 RNPSKSRRGSSTLSASLSNA-HNAETSSGHN-----NTVSMNNSPFSAPNDASH------ 212
Query: 206 MWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKA 257
+ S + NS+ + +D+ S D S T+++ NN ++LQ +SG+KA
Sbjct: 213 ITPQSSNFNSNASLSQDMTKSADGSSEMNTNAIMNNNE---TNLQ-TSGEKA 260
>sp|Q5U595|ZRN1A_XENLA Ubiquitin thioesterase zranb1-A OS=Xenopus laevis GN=zranb1-a PE=2
SV=1
Length = 701
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 269 CTLLNQRNKSVGNLKG--WSCKFCTLDNSSLSERCLAC 304
C N RNK N+KG W+C CT +N + +++C+ C
Sbjct: 132 CEEYNDRNKL--NIKGQHWTCSACTYENCAKAKKCVVC 167
>sp|Q6NUB7|ZRN1B_XENLA Ubiquitin thioesterase zranb1-B OS=Xenopus laevis GN=zranb1-b PE=2
SV=1
Length = 701
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 269 CTLLNQRNKSVGNLKG--WSCKFCTLDNSSLSERCLAC 304
C N RNK N+KG W+C CT +N + +++C+ C
Sbjct: 132 CEEYNDRNKL--NIKGQHWTCSACTYENCAKAKKCVVC 167
>sp|B1H2Q2|ZRAN1_XENTR Ubiquitin thioesterase zranb1 OS=Xenopus tropicalis GN=zranb1 PE=2
SV=1
Length = 701
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 269 CTLLNQRNKSVGNLKG--WSCKFCTLDNSSLSERCLAC 304
C N RNK N+KG W+C CT +N + +++C+ C
Sbjct: 132 CEEYNDRNKL--NIKGQHWTCSACTYENCAKAKKCVVC 167
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2
Length = 1594
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 20/65 (30%)
Query: 264 WQCNMCTLLN------------QRNKSVGNLKG--------WSCKFCTLDNSSLSERCLA 303
W C CTL+N + KS+ +++ W+C CTL NS S C A
Sbjct: 708 WTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCSHCTLKNSLHSPVCSA 767
Query: 304 CGEWR 308
C R
Sbjct: 768 CKSHR 772
>sp|A0JMQ9|ZRN1B_DANRE Ubiquitin thioesterase zranb1-B OS=Danio rerio GN=zranb1b PE=2 SV=1
Length = 716
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 232 SSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCT 291
S + S +S + + QTS +PS + C N RN+ + + W C CT
Sbjct: 113 SQQHSPLSPSETPQTSGSRPSPVTS----------DPCEEYNDRNRLNMHAQRWPCSACT 162
Query: 292 LDNSSLSERCLACGEWRYSNGP 313
+N S RC+ C + S P
Sbjct: 163 YENWPKSLRCVVCDHPKPSGSP 184
>sp|P31702|GSPE1_ERWCH Type II secretion system protein E OS=Erwinia chrysanthemi GN=outE
PE=3 SV=1
Length = 498
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 167 HGALLPSGPNRIGGDSSIKAALSPIQAA---AMAAERRLHDDMW-CGSKSLNSDIDVRED 222
HG +L +GP G +++ AALSP+ +A M E + ++ G +N +D+
Sbjct: 254 HGIILVTGPTASGKSTTLYAALSPLNSAERNIMTVEDPIEYELEGIGQTQVNPKVDMTFA 313
Query: 223 VGSSTDASESSKTSSVSNNRSGQTSSL 249
G + V R G+T+ +
Sbjct: 314 RGLRAILRQDPDVVLVGEIRDGETAQI 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,587,135
Number of Sequences: 539616
Number of extensions: 5284686
Number of successful extensions: 16187
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 16060
Number of HSP's gapped (non-prelim): 138
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)