BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020590
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Xenopus laevis GN=prorsd1p PE=2 SV=1
Length = 168
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 4/164 (2%)
Query: 5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSAL 63
+ +LLA L +L I EHP V TVE +V ++GG SKNLFLKDKK + ++VS L
Sbjct: 6 RQELLAYLHELDIRPVCAEHPEVFTVEEMMPHVQHLGGAHSKNLFLKDKKKKGLWLVSVL 65
Query: 64 ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
D +V++ L+++L LG G LR A E +MLE LKV G TP AL + DV +LD
Sbjct: 66 HDRQVNLNDLAKKLNLGSGNLRFADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQ 124
Query: 124 F--KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
F ER +FHP++N ++ + + FLK G DP + +
Sbjct: 125 FLEGGYERVYFHPMTNAATLGMTPQEFVTFLKKTGHDPIIIHFD 168
>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Bos taurus GN=PRORSD1 PE=2 SV=1
Length = 171
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Query: 11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
RL L I EHP V TVE ++ ++ G SKNLFLKDKK + +++V+ L D +++
Sbjct: 13 RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72
Query: 70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
+ L+++LG+G G LR A E MLE LKV G TP AL + DV +LD F
Sbjct: 73 LNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131
Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
E+ +FHP++N ++ L+ D F+K+ G DP ++ + N
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171
>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing
protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3
Length = 169
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
RL L I EHP V TVE ++ ++ G SKNLFLKDKK + +++V+ L D +++
Sbjct: 13 RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQIN 72
Query: 70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
+ L+++LG+G G LR A E MLE LKV G TP AL + DV +LD F
Sbjct: 73 LNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGH 131
Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
E+ +FHP++N ++ L+ D F+K G DP ++ +
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169
>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Mus musculus GN=Prorsd1 PE=2 SV=1
Length = 169
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 7 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALAD 65
+L RL L I EHP V T+E ++ ++ G SKNLFLKDKK + +++V+ L D
Sbjct: 9 ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHD 68
Query: 66 TKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF- 124
++++ L ++LG+G G LR A E MLE LKV G TP +L + DV +LD F
Sbjct: 69 RQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFL 127
Query: 125 -KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
E+ +FHP++N ++ L+ D F+K+ G DP ++ +
Sbjct: 128 EGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169
>sp|Q9L4Q7|PROX_CLOSD Prolyl-tRNA editing protein ProX OS=Clostridium sticklandii (strain
ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proX
PE=1 SV=1
Length = 164
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKY-VGNIGGGLSKNLFLKDKKHR-FYIVS 61
+K ++A+L +L+I ++ EH V T+E K + N+ + KNLFL+D K R Y+V
Sbjct: 5 AKQAVIAKLDELKINYTLIEHDPVYTIEEMEKIDIENVDY-IVKNLFLRDAKGRQHYLVV 63
Query: 62 ALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLD 121
A D K+D+K L ++G K L A E+ + + LK+ G+V+PF ++N+ +V ++ D
Sbjct: 64 ADKDQKIDLKTLQDKIGSTK--LSFASEDRLQKYLKLTKGAVSPFGVLNDETAEVEVVFD 121
Query: 122 KGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 156
K + HP N ++ L+ DL+K +K+ G
Sbjct: 122 KNLVGRSCVAVHPNDNSATVVLSYEDLEKIVKANG 156
>sp|Q6PFS2|PRXD1_DANRE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Danio rerio GN=Prorsd1 PE=2 SV=1
Length = 184
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 12 LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMK 71
LK L IE + EHP V TVE +V ++ G ++KNLFLKDKK R ++V D + +
Sbjct: 31 LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALG 90
Query: 72 VLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQ 127
LS+R LG LR+A E +LE L+V G VTP AL ++ R V +LD+ G
Sbjct: 91 ELSRR--LGAPNLRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTH 148
Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
C HP++N ++ + DL +FL+ P + +
Sbjct: 149 IHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184
>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7)
GN=proRS PE=1 SV=1
Length = 746
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 8 LLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTK 67
L LK+L I F + +H T++ + + KNLFLKDKK ++++ L +
Sbjct: 22 LFKELKELNINFKEVKHGLAATIKDLLEMNLENSTNILKNLFLKDKKKNYFLICTLNNKT 81
Query: 68 VDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQ 127
VD+K LS L LR E + IL + G ++P A+ N+ V L D+ K
Sbjct: 82 VDLKNLSN--ILKTNNLRFVDENNLNNILNIQPGCLSPLAIKNDKENIVKLYFDEEIKNM 139
Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
+ HPL N S+ + T D+ KF +S P YV +
Sbjct: 140 QEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPEYVQI 176
>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1
Length = 716
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 43 GLSKNLFLKDKKHRF-----YIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILK 97
L+K + LK K + I++AL T + ++ +G + RMA + + E+
Sbjct: 46 ALTKTIVLKPKTAKSQTVVPIILAALETTSTPSGIAAKAVGSKEA--RMAAADLVEEVFG 103
Query: 98 VPLGSVTPFALVNESARDVALLLDKGFKAQERCF-FHPLSNDMSISLNTNDLDKFLKSIG 156
+P V F++ E+A V ++LD FHP S+ ++ ++ + +LKS+G
Sbjct: 104 IPPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVFVSPAAVQTYLKSVG 163
Query: 157 RDPAYVDLEA 166
+P VD A
Sbjct: 164 VNPIIVDFSA 173
>sp|P71000|YWHH_BACSU Uncharacterized protein YwhH OS=Bacillus subtilis (strain 168)
GN=ywhH PE=4 SV=1
Length = 157
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
Query: 12 LKDLQIEFSQYEH--------PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
LK ++ F+Q+ + TVE A+ +G ++K+L + + + ++ A
Sbjct: 3 LKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIVAA 62
Query: 64 ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
D K+D K Q G RM +LE +G V PF L A D + LD
Sbjct: 63 GDAKIDNKKSRQTFGFKA---RMLSPNEVLEQTGHEIGGVCPFGL----AHDPEVYLDVS 115
Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKF 151
K + F S + +I L +L +F
Sbjct: 116 LKRFQTVFPACGSRNSAIELTPKELSEF 143
>sp|A4J5Y2|SYP_DESRM Proline--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=proS PE=3 SV=1
Length = 569
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 16 QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQ 75
Q+E + P T E AK++G + K +F K K +V+AL D+ +
Sbjct: 250 QLELQEVSTPGKKTAEEVAKFLGVEPFQVIKTMFYKTDKE---VVAALVRGDRDVNEIKL 306
Query: 76 RLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVN 110
LG L +A E T+ ++ P G V P L N
Sbjct: 307 LNVLGALTLDLADESTVQQVTGAPTGYVGPVGLEN 341
>sp|A5IGL5|SYP_LEGPC Proline--tRNA ligase OS=Legionella pneumophila (strain Corby)
GN=proS PE=3 SV=1
Length = 569
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84
P T++ A ++G K L +K K+H + D +++ +V + + L L
Sbjct: 258 PNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDELN-EVKATKHPLVHSPL 316
Query: 85 RMAPEETMLEILKVPLGSVTPFAL 108
EE +L+ LK PLGS+ P L
Sbjct: 317 SFIDEELILKTLKTPLGSIGPIQL 340
>sp|Q5X756|SYP_LEGPA Proline--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=proS PE=3 SV=1
Length = 569
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84
P T++ A ++G K L +K K+H + D +++ +V + + L L
Sbjct: 258 PNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDELN-EVKATKHPLVHSPL 316
Query: 85 RMAPEETMLEILKVPLGSVTPFAL 108
EE +L+ LK PLGS+ P L
Sbjct: 317 SFIDEELILKTLKTPLGSIGPIQL 340
>sp|Q5ZXN7|SYP_LEGPH Proline--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=proS
PE=3 SV=2
Length = 569
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84
P T++ A ++G K L +K K+H + D +++ +V + + L L
Sbjct: 258 PNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDELN-EVKAIKHPLVHAPL 316
Query: 85 RMAPEETMLEILKVPLGSVTPFAL 108
EE +L+ LK PLGS+ P L
Sbjct: 317 SFIDEELILKTLKTPLGSIGPIQL 340
>sp|Q5WYK5|SYP_LEGPL Proline--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=proS PE=3 SV=1
Length = 569
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84
P T++ A ++G K L +K K+H + D +++ +V + + L L
Sbjct: 258 PNKKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDELN-EVKATKHPLVHSPL 316
Query: 85 RMAPEETMLEILKVPLGSVTPFAL 108
EE +L+ LK PLGS+ P L
Sbjct: 317 SFIDEELILKTLKTPLGSIGPVKL 340
>sp|A9BIU9|ADEC_PETMO Adenine deaminase OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=ade PE=3 SV=1
Length = 570
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 19 FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK------HRFYIVSALADTKVDMKV 72
F +Y + VE + K G IG GL + L+ H + + L DMK+
Sbjct: 415 FIRYNINKIAVVE-RHKSTGKIGLGLIRGFGLESGAIASSIAHDSHNIIVLGTNSCDMKI 473
Query: 73 LSQRLGLGKGGLRMAPEETMLEILKVPLG---SVTPFALVNESARDV 116
+++ +GG+ +A + +++ +++P+G S P V+E +++
Sbjct: 474 AVEKIAEIQGGIVIANNQKIVDFIELPIGGLISTDPIGKVSEKLQEL 520
>sp|A4SGK7|RL7_PROVI 50S ribosomal protein L7/L12 OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=rplL PE=3 SV=1
Length = 123
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 201 SAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILD 256
+AG S +N +A T +K AKD+ D + KAV + S DAEK V+E+ D
Sbjct: 63 AAGDSKINVIKVVRAITGLGLKEAKDLV---DGAPKAVKEAVSKEDAEKIVKELKD 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,988,908
Number of Sequences: 539616
Number of extensions: 4859274
Number of successful extensions: 12227
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 12167
Number of HSP's gapped (non-prelim): 78
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)