Query 020590
Match_columns 324
No_of_seqs 191 out of 1387
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjf_A DNA-binding protein, pu 100.0 5.2E-36 1.8E-40 265.6 17.5 165 3-169 14-178 (180)
2 1vki_A Hypothetical protein AT 100.0 1.8E-35 6E-40 262.4 20.0 163 2-166 18-181 (181)
3 3op6_A Uncharacterized protein 100.0 3.6E-33 1.2E-37 240.3 15.3 151 2-164 1-152 (152)
4 2z0x_A Putative uncharacterize 100.0 7.9E-32 2.7E-36 232.3 18.4 153 1-166 3-157 (158)
5 1wdv_A Hypothetical protein AP 100.0 1.7E-30 5.7E-35 221.9 18.8 148 6-165 3-151 (152)
6 1dbu_A HI1434, cysteinyl-tRNA( 100.0 7.5E-30 2.6E-34 219.7 17.2 151 6-167 2-158 (158)
7 2dxa_A Protein YBAK; trans-edi 100.0 3.1E-29 1E-33 218.2 14.3 150 6-166 9-164 (166)
8 3mem_A Putative signal transdu 99.9 4.4E-23 1.5E-27 205.7 10.1 131 6-158 6-139 (457)
9 2j3l_A Prolyl-tRNA synthetase; 99.2 1.5E-10 5.3E-15 117.5 17.4 106 26-138 259-364 (572)
10 4ayb_H DNA-directed RNA polyme 56.4 13 0.00043 28.8 4.2 60 3-64 23-84 (84)
11 1hmj_A RPB5, protein (subunit 56.0 5.8 0.0002 30.4 2.2 43 3-47 15-57 (78)
12 1eik_A RNA polymerase subunit 48.0 7.5 0.00026 29.7 1.6 43 3-47 17-59 (77)
13 2jrm_A Ribosome modulation fac 30.6 8.6 0.00029 28.5 -0.5 22 303-324 10-32 (65)
14 3v22_V Ribosome modulation fac 29.2 9.2 0.00031 28.1 -0.5 21 303-323 10-31 (61)
15 3gkx_A Putative ARSC family re 26.3 47 0.0016 26.4 3.2 38 5-42 17-58 (120)
16 3gkn_A Bacterioferritin comigr 24.8 2.1E+02 0.0071 22.3 6.9 54 4-61 79-141 (163)
17 3fz4_A Putative arsenate reduc 22.4 55 0.0019 26.0 2.9 33 5-37 16-49 (120)
18 2lqo_A Putative glutaredoxin R 21.5 63 0.0022 24.5 2.9 22 5-26 17-38 (92)
19 3h0g_E DNA-directed RNA polyme 21.3 51 0.0017 29.5 2.7 43 3-47 151-193 (210)
20 3rdw_A Putative arsenate reduc 20.8 58 0.002 25.9 2.7 35 5-39 18-56 (121)
21 1aba_A Glutaredoxin; electron 20.8 74 0.0025 22.9 3.1 21 5-25 17-37 (87)
22 3l78_A Regulatory protein SPX; 20.3 1.1E+02 0.0039 23.9 4.4 33 5-37 13-46 (120)
23 1z3e_A Regulatory protein SPX; 20.2 1.5E+02 0.0052 23.4 5.2 33 5-37 14-47 (132)
24 3eyt_A Uncharacterized protein 20.2 2.9E+02 0.01 21.0 7.7 66 4-75 79-145 (158)
No 1
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=100.00 E-value=5.2e-36 Score=265.58 Aligned_cols=165 Identities=36% Similarity=0.633 Sum_probs=157.6
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCC
Q 020590 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (324)
Q Consensus 3 ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG~kr~ 82 (324)
|+.++++++|+++||+|+.++||+..|++++++++|+++++++|||+|++++++||++++|+|+++|+++|++.+|.+
T Consensus 14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k-- 91 (180)
T 1vjf_A 14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG-- 91 (180)
T ss_dssp CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence 678999999999999999999999999999999999999999999999996678999999999999999999999986
Q ss_pred ccccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCCEEE
Q 020590 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (324)
Q Consensus 83 ~Lr~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~~~V 162 (324)
+++||++++++++|||.+|+|+|||+.++..+.+++|+|+++...+.++||||.++.++.|+++||.+++++.+|.+.||
T Consensus 92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v 171 (180)
T 1vjf_A 92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV 171 (180)
T ss_dssp CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence 79999999999999999999999999876667899999999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 020590 163 DLEANPA 169 (324)
Q Consensus 163 D~s~~~~ 169 (324)
||+++..
T Consensus 172 ~~~~~~~ 178 (180)
T 1vjf_A 172 DFAAMEV 178 (180)
T ss_dssp ETTTTEE
T ss_pred ECccccc
Confidence 9998654
No 2
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=100.00 E-value=1.8e-35 Score=262.39 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=155.2
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhC-CC
Q 020590 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG 80 (324)
Q Consensus 2 ~ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG-~k 80 (324)
.|+.++++++|+++||+|+.++||+..|++++++++|+++++++|||+|++++++||++++|+|+++|++|+++.+| .+
T Consensus 18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k 97 (181)
T 1vki_A 18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS 97 (181)
T ss_dssp CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence 47789999999999999999999999999999999999999999999999976789999999999999999999999 55
Q ss_pred CCccccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCCE
Q 020590 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (324)
Q Consensus 81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~~ 160 (324)
+++||++++++++|||.+|+|+|||+.+|..+.+++|+|+++...+.+|||||.++.++.|+++||.+++++.||++.
T Consensus 98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~ 175 (181)
T 1vki_A 98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL 175 (181)
T ss_dssp --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence 699999999999999999999999997765578999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 020590 161 YVDLEA 166 (324)
Q Consensus 161 ~VD~s~ 166 (324)
||||++
T Consensus 176 ~v~~~~ 181 (181)
T 1vki_A 176 VLKVSE 181 (181)
T ss_dssp EECCBC
T ss_pred EEeCCC
Confidence 999974
No 3
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.6e-33 Score=240.34 Aligned_cols=151 Identities=22% Similarity=0.353 Sum_probs=137.9
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCC
Q 020590 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK 81 (324)
Q Consensus 2 ~ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG~kr 81 (324)
||+.+++.++|+++||+|+.++||+..|++++|+++|+++++++|||+++++ +++|++++|+|+++|++|+++.+|.+
T Consensus 1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~- 78 (152)
T 3op6_A 1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS- 78 (152)
T ss_dssp -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence 6889999999999999999999999999999999999999999999999996 58999999999999999999999986
Q ss_pred CccccCCHHHHHHhc-CCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCCE
Q 020590 82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (324)
Q Consensus 82 ~~Lr~AseEeL~e~l-G~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~~ 160 (324)
+++||+++++.+.+ ||.+|+|||||+.+ ++++|+|+++...+.||+|+|+++.++.|+++||.++++ ..
T Consensus 79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~ 148 (152)
T 3op6_A 79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK-----PT 148 (152)
T ss_dssp -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC-----CE
T ss_pred -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc-----Ce
Confidence 79999999999885 99999999999985 699999999999999999999999999999999999997 45
Q ss_pred EEEc
Q 020590 161 YVDL 164 (324)
Q Consensus 161 ~VD~ 164 (324)
++|+
T Consensus 149 ~~d~ 152 (152)
T 3op6_A 149 LVTL 152 (152)
T ss_dssp EECC
T ss_pred ecCC
Confidence 5554
No 4
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=100.00 E-value=7.9e-32 Score=232.30 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=144.0
Q ss_pred CCCcHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhC
Q 020590 1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG 78 (324)
Q Consensus 1 M~ms~~~v~~~L~~lgI~y-e~veHp~-~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG 78 (324)
|.|+.++++++|+++||+| +.++||+ ..|++++++++|+++++++|||+++++ ++++++++|+|+++|++|+++.+|
T Consensus 3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg 81 (158)
T 2z0x_A 3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG 81 (158)
T ss_dssp CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence 5677899999999999999 9999995 999999999999999999999999984 679999999999999999999999
Q ss_pred CCCCccccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCC
Q 020590 79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (324)
Q Consensus 79 ~kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~ 158 (324)
. +++||++++++++|||.+|+|+|||+. +++++|+|+++...+.||+|+|.++.++.|+++||.++++
T Consensus 82 ~---~l~~a~~e~~~~~tG~~~G~v~P~gl~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~----- 149 (158)
T 2z0x_A 82 G---PLRQATPEEVRELTGFAIGGVPPVGHN----TPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG----- 149 (158)
T ss_dssp S---CEEECCHHHHHHHHSSCTTSCCSSCCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred C---CcEECCHHHHHHHhCCCCccCCcCCCC----CCCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence 7 399999999999999999999999997 3799999999999999999999999999999999999997
Q ss_pred CEEEEccC
Q 020590 159 PAYVDLEA 166 (324)
Q Consensus 159 ~~~VD~s~ 166 (324)
..|+|+++
T Consensus 150 ~~~~di~~ 157 (158)
T 2z0x_A 150 AQVADLKE 157 (158)
T ss_dssp CEEECCBC
T ss_pred CEEEEeec
Confidence 56888874
No 5
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=99.97 E-value=1.7e-30 Score=221.86 Aligned_cols=148 Identities=17% Similarity=0.287 Sum_probs=140.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCcc
Q 020590 6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (324)
Q Consensus 6 ~~v~~~L~~lgI~ye~veHp~~-~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG~kr~~L 84 (324)
++++++|+++||+|+.++||+. .|++++++++|+++++++|||++++++++++++++|+|+++|++|+++.+| + ++
T Consensus 3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l 79 (152)
T 1wdv_A 3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV 79 (152)
T ss_dssp CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence 4799999999999999999998 999999999999999999999999866689999999999999999999999 5 79
Q ss_pred ccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCCEEEEc
Q 020590 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164 (324)
Q Consensus 85 r~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~~~VD~ 164 (324)
+||++++++++|||.+|+|+|||+.+ ++++|+|+++...+.+|+++|.++.++.|+++||.+++. ..|+|+
T Consensus 80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di 150 (152)
T 1wdv_A 80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV 150 (152)
T ss_dssp EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence 99999999999999999999999973 799999999999999999999999999999999999986 468887
Q ss_pred c
Q 020590 165 E 165 (324)
Q Consensus 165 s 165 (324)
+
T Consensus 151 ~ 151 (152)
T 1wdv_A 151 S 151 (152)
T ss_dssp B
T ss_pred e
Confidence 6
No 6
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=99.97 E-value=7.5e-30 Score=219.68 Aligned_cols=151 Identities=15% Similarity=0.241 Sum_probs=136.6
Q ss_pred HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeeEEEEEe--cCCcEEEEEEcCCCCCCHHHHHHHhCC
Q 020590 6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL 79 (324)
Q Consensus 6 ~~v~~~L~~lgI~ye~v--eHp~~--~TieeaAk~lg~~~~~i~KtLvLk~--kkg~~vLVvv~gD~kVDlkKL~k~LG~ 79 (324)
++++++|+++||+|+.+ +|++. .|++++|+++|+++++++|||+++. ++++++++++|+|+++|++|+++.+|.
T Consensus 2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~ 81 (158)
T 1dbu_A 2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV 81 (158)
T ss_dssp CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence 57999999999999996 56665 6899999999999999999999985 345799999999999999999999998
Q ss_pred CCCccccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCC
Q 020590 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (324)
Q Consensus 80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~ 159 (324)
+ +++||++++++++|||.+|+|+|||+. +.+++|+|+++...+.+++|+|.++..+.|+++||.+++. .
T Consensus 82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~ 150 (158)
T 1dbu_A 82 K--KVEMADKDAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A 150 (158)
T ss_dssp S--CEEECCHHHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred C--CeeeCCHHHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 799999999999999999999999986 4799999999999999999999999999999999999997 4
Q ss_pred EEEEccCC
Q 020590 160 AYVDLEAN 167 (324)
Q Consensus 160 ~~VD~s~~ 167 (324)
.|+||+.+
T Consensus 151 ~~~di~~~ 158 (158)
T 1dbu_A 151 EFTDIVDE 158 (158)
T ss_dssp EEECCBCC
T ss_pred EEEeeecC
Confidence 68998753
No 7
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=99.96 E-value=3.1e-29 Score=218.23 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=138.3
Q ss_pred HHHHHHHHhCCCCeEE--EEcCCC--CCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcCCCCCCHHHHHHHhCC
Q 020590 6 DQLLARLKDLQIEFSQ--YEHPAV--MTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGL 79 (324)
Q Consensus 6 ~~v~~~L~~lgI~ye~--veHp~~--~TieeaAk~lg~~~~~i~KtLvLk~kkg--~~vLVvv~gD~kVDlkKL~k~LG~ 79 (324)
+++.++|+++||+|++ ++|++. .|++++|+++|+++++++|||+++++++ +++++++|+|+++|++|+++.+|.
T Consensus 9 t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~~~lg~ 88 (166)
T 2dxa_A 9 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGA 88 (166)
T ss_dssp CHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHHHHHTC
T ss_pred hHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHHHHhCC
Confidence 7899999999999999 568873 6789999999999999999999998642 499999999999999999999998
Q ss_pred CCCccccCCHHHHHHhcCCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCCC
Q 020590 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (324)
Q Consensus 80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~~ 159 (324)
+ +++||+++++++++||.+|+|+|||+. +.+++|+|+++...+.||+|+|.++..+.|+++||.++++ .
T Consensus 89 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~-----~ 157 (166)
T 2dxa_A 89 K--KVEMADPMVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD-----A 157 (166)
T ss_dssp S--CEEECCHHHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----C
T ss_pred C--ceEECCHHHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 799999999999999999999999986 4799999999999999999999999999999999999987 4
Q ss_pred EEEEccC
Q 020590 160 AYVDLEA 166 (324)
Q Consensus 160 ~~VD~s~ 166 (324)
.|+||+.
T Consensus 158 ~~~di~~ 164 (166)
T 2dxa_A 158 KFADIAR 164 (166)
T ss_dssp EEECCEE
T ss_pred EEEEEec
Confidence 5888875
No 8
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=99.88 E-value=4.4e-23 Score=205.70 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=123.0
Q ss_pred HHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCc
Q 020590 6 DQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83 (324)
Q Consensus 6 ~~v~~~L~~l--gI~ye~veHp~~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG~kr~~ 83 (324)
++++++|+++ ||+|+.++ |+++++++|||++++++ +|+++++|++++||++++++.+|.+
T Consensus 6 ~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~-~~~l~v~p~~~~ldlk~l~~~~g~k--- 67 (457)
T 3mem_A 6 VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQ-GNLQAICRRNDMLDLEALNKRLGRD--- 67 (457)
T ss_dssp HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETT-EEEEEEEETTSEECHHHHHHHHTCC---
T ss_pred HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECC-cEEEEEecCCCeeCHHHHHHHhCCC---
Confidence 6899999999 99999987 67799999999999976 4999999999999999999999974
Q ss_pred cccCCHHHHHHhc-CCCccccCCCcccCCCCCCeEEEEecccccCCeEEEecCCCcceEEecHHHHHHHHhhcCCC
Q 020590 84 LRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (324)
Q Consensus 84 Lr~AseEeL~e~l-G~~pG~VsPfGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~~tl~Is~~DL~k~l~s~g~~ 158 (324)
++|++++++.++| ||.+|+|||||+.+ ++++|+|+++..++.||+++|+++.++.|+++||.+++++.+|.
T Consensus 68 ~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~~ 139 (457)
T 3mem_A 68 LRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARH 139 (457)
T ss_dssp CEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEEE
T ss_pred CeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCcc
Confidence 9999999999998 69999999999985 79999999999999999999999999999999999999877665
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.24 E-value=1.5e-10 Score=117.53 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHHHhCCCCCccccCCHHHHHHhcCCCccccCC
Q 020590 26 AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTP 105 (324)
Q Consensus 26 ~~~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k~LG~kr~~Lr~AseEeL~e~lG~~pG~VsP 105 (324)
...|++++++.+|+++.+++|+|+++.+ ++++++++++|+++|++++.+.++.+ .+.++..+++.+++|+..|+++|
T Consensus 259 ~~~ti~~l~~~lg~~~~~i~K~l~~~~~-~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~p 335 (572)
T 2j3l_A 259 EVGTIAEVANFFEVEPQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIGP 335 (572)
T ss_dssp TCCSHHHHHHHHTCCGGGBEEEEEEEET-TEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCCS
T ss_pred CCCcHHHHHHHhCcCHHHeEEEEEEEeC-CcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccCC
Confidence 4567999999999999999999999985 47999999999999999999999985 69999999999999999999999
Q ss_pred CcccCCCCCCeEEEEecccccCCeEEEecCCCc
Q 020590 106 FALVNESARDVALLLDKGFKAQERCFFHPLSND 138 (324)
Q Consensus 106 fGL~~d~~~~V~VvID~sL~~~~~I~~haG~n~ 138 (324)
+|+. +++++++|.++.....+++++|..+
T Consensus 336 ~gl~----~~i~~~iD~sl~r~~~~~~ga~~~~ 364 (572)
T 2j3l_A 336 VNVS----EDVKIYADLAVQDLANAIVGANEDG 364 (572)
T ss_dssp TTCC----TTCEEEEETTTTTCCSEEEECSSTT
T ss_pred ccCC----CCCcEEEehhhhcCCceEEccCCCC
Confidence 9986 3799999999999999999998643
No 10
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=56.42 E-value=13 Score=28.80 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEcC
Q 020590 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALA 64 (324)
Q Consensus 3 ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~KtLvLk~kkg--~~vLVvv~g 64 (324)
++.++..++|++.+|.-+ +-|.+...+-+|+++|..+++++|-.=--.-.| -+|=+|++|
T Consensus 23 Ls~eE~~~ll~~y~i~~~--qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv~g 84 (84)
T 4ayb_H 23 LSIDEAYKILKELGIRPE--QLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVISG 84 (84)
T ss_dssp CCHHHHHHHHHHHTCCGG--GSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC-
T ss_pred CCHHHHHHHHHHhcCCHh--HCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEeCC
Confidence 567899999999999643 457776677789999999999998543221112 366677664
No 11
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=56.03 E-value=5.8 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 020590 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (324)
Q Consensus 3 ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~Kt 47 (324)
|+.++..++|++.+|. ...-|.+...+-+|+++|..+++++|-
T Consensus 15 Ls~eEk~~lL~~y~i~--~~qLPrI~~~DPvar~~G~k~GdVvkI 57 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIK--IQQLPKIYEDDPVIQEIGAKEGDVVRV 57 (78)
T ss_pred CCHHHHHHHHHHcCCC--HHHCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 6789999999999985 344677888888999999999999996
No 12
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=47.96 E-value=7.5 Score=29.74 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 020590 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (324)
Q Consensus 3 ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~Kt 47 (324)
|+.++..++|++.+|. ...-|.+...+-+|+++|..+|+++|-
T Consensus 17 Ls~eEk~~lL~~y~i~--~~qLP~I~~~DPvar~~G~k~GdVvkI 59 (77)
T 1eik_A 17 LNESEAKRVLKELDAH--PEQLPKIKTTDPVAKAIGAKRGDIVKI 59 (77)
T ss_dssp ECHHHHHHHHHHTTCC--TTTSCCCBTTSHHHHGGGCCTTCEEEE
T ss_pred cCHHHHHHHHHHcCCC--HHHCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 5689999999999985 334577888889999999999999996
No 13
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=30.57 E-value=8.6 Score=28.55 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=17.3
Q ss_pred ccccccccccccc-cccccCCCC
Q 020590 303 NTAYTQGFHAGKA-SSLTQCPRT 324 (324)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~~ 324 (324)
+.||..||.||.. .....||-+
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy~ 32 (65)
T 2jrm_A 10 ERAQSQGYKAGLNGRSQEACPYQ 32 (65)
T ss_dssp HHHHHHHHHHHHTSCSGGGCCSC
T ss_pred HHHHHHHHHhhcCCCCcccCCCC
Confidence 5689999999964 567789953
No 14
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=29.21 E-value=9.2 Score=28.05 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=16.8
Q ss_pred ccccccccccccc-cccccCCC
Q 020590 303 NTAYTQGFHAGKA-SSLTQCPR 323 (324)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~ 323 (324)
+.||..||.||.. .....||-
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy 31 (61)
T 3v22_V 10 ERAHQRGYQAGIAGRSKEMCPY 31 (61)
T ss_dssp HHHHHHHHHHHSSSSCCSSCCC
T ss_pred HHHHHHHHHhhccCCChhhCCC
Confidence 5689999999964 45678985
No 15
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=26.27 E-value=47 Score=26.44 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHH---HHHhCCCCC
Q 020590 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQ---AKYVGNIGG 42 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp-~~~Tieea---Ak~lg~~~~ 42 (324)
..++.++|+++||+|+.++.- ...|.++. .+.+|.+..
T Consensus 17 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~ 58 (120)
T 3gkx_A 17 CQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVK 58 (120)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcCCCHH
Confidence 468899999999999998763 23455554 444565444
No 16
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=24.80 E-value=2.1e+02 Score=22.28 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=34.3
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCc---------eeeEEEEEecCCcEEEEE
Q 020590 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGG---------LSKNLFLKDKKHRFYIVS 61 (324)
Q Consensus 4 s~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~---------i~KtLvLk~kkg~~vLVv 61 (324)
+.+.+.++++++++.|..+.-+. .+.++.+|+.... .+-+.++.+++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 79 SVKSHDNFCAKQGFAFPLVSDGD----EALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CHHHHHHHHHHHCCSSCEEECTT----CHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHhCCCceEEECCc----HHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 35677888888888887764222 2566667664321 156788888878765555
No 17
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=22.41 E-value=55 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 020590 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp-~~~TieeaAk~l 37 (324)
..++.++|+++||+|+.++.- ...|.++..+.+
T Consensus 16 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l 49 (120)
T 3fz4_A 16 CRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWL 49 (120)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEeccCchhHHHHHHHH
Confidence 467899999999999998763 235555554443
No 18
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.48 E-value=63 Score=24.48 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC
Q 020590 5 KDQLLARLKDLQIEFSQYEHPA 26 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp~ 26 (324)
..++.++|+++||+|+.++-..
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~ 38 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEH 38 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTT
T ss_pred HHHHHHHHHhcCCceEEEEcCC
Confidence 4789999999999999988643
No 19
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.25 E-value=51 Score=29.53 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 020590 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (324)
Q Consensus 3 ms~~~v~~~L~~lgI~ye~veHp~~~TieeaAk~lg~~~~~i~Kt 47 (324)
++.++..++|++.+|. ...-|.+...+-+|+++|..+|+++|-
T Consensus 151 ls~eE~~~lL~~y~i~--~~qLP~I~~~DPv~~~~g~k~GdVvkI 193 (210)
T 3h0g_E 151 LSPDEKKELLDRYKLR--ETQLPRIQLADPVARYLGLKRGEVVKI 193 (210)
T ss_dssp CCHHHHHHHHHHTCCC--TTTSCCCCTTCHHHHHHTCCTTCEEEE
T ss_pred cCHHHHHHHHHHcCCC--HHHCCcccccCcchhhhCCCCCCEEEE
Confidence 5789999999999985 345678888889999999999999996
No 20
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=20.77 E-value=58 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHH---HHHhCC
Q 020590 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQ---AKYVGN 39 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp-~~~Tieea---Ak~lg~ 39 (324)
..++.++|+++||+|+.++.- ...|.++. .+.+|.
T Consensus 18 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 56 (121)
T 3rdw_A 18 SRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGF 56 (121)
T ss_dssp HHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence 468899999999999987753 23455554 444555
No 21
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=20.76 E-value=74 Score=22.87 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 020590 5 KDQLLARLKDLQIEFSQYEHP 25 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp 25 (324)
..++.++|+++||+|+.++-.
T Consensus 17 C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 17 CDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp HHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHcCCCEEEEEee
Confidence 467999999999999998865
No 22
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.35 E-value=1.1e+02 Score=23.94 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 020590 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp-~~~TieeaAk~l 37 (324)
..++.++|+++||+|+.++.. ...|.++..+.+
T Consensus 13 c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l 46 (120)
T 3l78_A 13 CRKARAWLNRHDVVFQEHNIMTSPLSRDELLKIL 46 (120)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHH
Confidence 467899999999999998864 345667766655
No 23
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=20.23 E-value=1.5e+02 Score=23.44 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCeEEEEcCC-CCCHHHHHHHh
Q 020590 5 KDQLLARLKDLQIEFSQYEHPA-VMTVEAQAKYV 37 (324)
Q Consensus 5 ~~~v~~~L~~lgI~ye~veHp~-~~TieeaAk~l 37 (324)
..++.++|+++||+|+.++... ..+.++..+.+
T Consensus 14 C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l 47 (132)
T 1z3e_A 14 CRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL 47 (132)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEccCCCccHHHHHHHH
Confidence 4678999999999999988643 35666666655
No 24
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.15 E-value=2.9e+02 Score=21.03 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEcCCCCCCHHHHHH
Q 020590 4 SKDQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQ 75 (324)
Q Consensus 4 s~~~v~~~L~~lgI~ye~veHp~~-~TieeaAk~lg~~~~~i~KtLvLk~kkg~~vLVvv~gD~kVDlkKL~k 75 (324)
+.+.+.++++++++.|..+.-+.. ..+.+.++.+|+.. +-++++.+++|+.+.... |. ++...|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~---~P~~~lid~~G~i~~~~~-g~--~~~~~l~~ 145 (158)
T 3eyt_A 79 TPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG---TPSLLLIDKAGDLRAHHF-GD--VSELLLGA 145 (158)
T ss_dssp CHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCS---SSEEEEECTTSEEEEEEE-SC--CCHHHHHH
T ss_pred CHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCC---CCEEEEECCCCCEEEEEe-CC--CCHHHHHH
Confidence 568899999999999876543332 22335677776532 456788887776444333 32 34444443
Done!