BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020591
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
 pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
          Length = 306

 Score = 35.0 bits (79), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 109/277 (39%), Gaps = 2/277 (0%)

Query: 34  LAIRISNVANMVLFAAKVYASVKSGSLAIIASTXXXXXXXXXGFILWFTAFSMQTPNPYQ 93
           LA R S    + L   K+ A + SGS +++AS            I +        P  + 
Sbjct: 13  LASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHD 72

Query: 94  YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMXXXX 153
           +  G  + +PL  L  ++ +      ++      L++     N T      VV I+    
Sbjct: 73  HRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLA 132

Query: 154 XXXXXXXXYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALY 213
                      A  + +V+A +  +  D+  N   L+A++L+ Y   W D + A+++A Y
Sbjct: 133 LVLLQKRALA-ATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVLIACY 191

Query: 214 TIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVD 273
             +        ++ +L+ R    +  Q++  +       +  +  +R    G   F++  
Sbjct: 192 IGQQAFDLGYRSIQALLDRELDEDTRQRIKLIA-KEDPRVLGLHDLRTRQAGKTVFIQFH 250

Query: 274 IVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310
           + L  ++ L EAH I ++   +++   E     +H D
Sbjct: 251 LELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQD 287


>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
           Diffusion Facilitator Family Protein
          Length = 107

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 259 VRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESL-QEKLELLPEIERAFVHLD 310
           VR    G+ YF+E DI +     +++AH++   + +E L+   +IE   +H++
Sbjct: 31  VRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVE 83


>pdb|3I4R|B Chain B, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens
          Length = 644

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES- 291
           +LQ   +L W H  + + ++   A   G     + YF +   +L  S     A D  E  
Sbjct: 416 FLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDM 475

Query: 292 LQEKLELLPEIERAFVH 308
           LQEK+E + E ER  +H
Sbjct: 476 LQEKIEEMAEQERFLLH 492


>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 164 RAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 223
           R   ++ V+A    +  DV+ N   L+A+ L+ Y     D + A+ + +Y + +      
Sbjct: 140 RRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGY 199

Query: 224 ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQ 283
           E V SL+ R+   E  Q++  +       +     +R    G   F+++ + +  S+PL 
Sbjct: 200 EAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLV 258

Query: 284 EAHDIGESLQEKL 296
           +AH + + +++ +
Sbjct: 259 QAHMVADQVEQAI 271


>pdb|3CQG|B Chain B, Nucleoporin Nup107/nup133 Interaction Complex, Delta
           Finger Mutant
          Length = 227

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 244 YLCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES-LQEKLE 297
           +L W H  + + ++   A   G     + YF +   +L  S     A D  E  LQEK+E
Sbjct: 5   HLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIE 64

Query: 298 LLPEIERAFVH 308
            + E ER  +H
Sbjct: 65  EMAEQERFLLH 75


>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 164 RAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 223
           R   ++ V+A    +  DV+ N   L+A+ L+ Y     D + A+ + +Y + +      
Sbjct: 133 RRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGY 192

Query: 224 ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQ 283
           E V SL+ R+   E  Q++  +       +     +R    G   F+++ + +  S+PL 
Sbjct: 193 EAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLV 251

Query: 284 EAHDIGESLQEKL 296
           +AH + + +++ +
Sbjct: 252 QAHMVADQVEQAI 264


>pdb|3CQC|B Chain B, Nucleoporin Nup107/nup133 Interaction Complex
          Length = 227

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 245 LCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES-LQEKLEL 298
           L W H  + + ++   A   G     + YF +   +L  S     A D  E  LQEK+E 
Sbjct: 6   LSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEE 65

Query: 299 LPEIERAFVH 308
           + E ER  +H
Sbjct: 66  MAEQERFLLH 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,530,125
Number of Sequences: 62578
Number of extensions: 302645
Number of successful extensions: 575
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 8
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)