RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020591
(324 letters)
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 144 bits (365), Expect = 3e-41
Identities = 69/279 (24%), Positives = 135/279 (48%), Gaps = 15/279 (5%)
Query: 45 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 104
+L K+ A + +GSLA++A L SL+DLLS + P ++P G R++PL
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 105 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 164
L+ + ++ +G+ I+ ES+ L+S E+ ++ + L +V LLL +Y R
Sbjct: 61 AALIVSLLLLGVGVFILYESIERLISPEEIEPG------GILLVALISLVVNLLLALYLR 114
Query: 165 ------AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRT 217
+ ++A A DV+ ++ L+ +LL DP+ ++++AL + T
Sbjct: 115 RAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYT 174
Query: 218 WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLP 277
+ E+++ L+G S PE + ++ + + +R + G YFV++ I +
Sbjct: 175 GLRLLKESLSELLGASPDPELVDEIRDAL-EKLPGVLGVHDLRVWKSGPKYFVDIHIEVD 233
Query: 278 ASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYTH 315
+ ++EAH+I + ++ L E P I +H++
Sbjct: 234 PDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAPEV 272
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 144 bits (366), Expect = 5e-41
Identities = 77/297 (25%), Positives = 153/297 (51%), Gaps = 16/297 (5%)
Query: 20 MTKEERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFIL 79
M +EER L R A IS N+ L K+ A + +GS+A++A + SL D+++ I+
Sbjct: 2 MMEEERLKLVRR---AALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIV 58
Query: 80 WFT-AFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLT 138
S + P+ +P G + + L L+ + ++ G +I+LE+++ L+S +
Sbjct: 59 LIGLRISSKPPD-RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQ-----P 112
Query: 139 KEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNIIGLVAVLL 194
E +G+ L ++K L Y R ++ + A A H DV+T++ LV +L
Sbjct: 113 VEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLG 172
Query: 195 ANYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIR 254
+ W+DP+ A++++LY ++T E+VN L+ + PE L+K+ + +
Sbjct: 173 SLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKG 232
Query: 255 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLD 310
+ +R GS F++V I + + L+EAH+I + +++++ + P++ +H++
Sbjct: 233 -VHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 96.1 bits (240), Expect = 4e-23
Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 26/281 (9%)
Query: 45 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 104
+L K+ + SGSLA++A + SL D+ + I + P ++P G R + L
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEIL 60
Query: 105 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 164
L+ + + L I+ E++ L++ E + ++ + + +V L+L +Y
Sbjct: 61 AALLNGLFLVVVALFILYEAIERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLH 115
Query: 165 AFT----NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSM 220
+ ++A A D ++++ L+ LL + W DP+ A++++L + +
Sbjct: 116 RVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHWADPIAALLISLLILY-TAF 174
Query: 221 TVL-ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-------GSHYFVEV 272
+L E++N L+ + E L+++ K+I I V+ F++V
Sbjct: 175 RLLKESINVLLDAAPDEEDLEEIK-------KAILSIPGVKGVHDLHIWRIGPGKLFLDV 227
Query: 273 DIVLPASMPLQEAHDIG-ESLQEKLELLPEIERAFVHLDYE 312
+V+ + L++AHDI E +E L+ P IE + ++
Sbjct: 228 HVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 50.4 bits (121), Expect = 4e-07
Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 12/275 (4%)
Query: 27 NLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFS 85
+ AR + A + +L K++A +GS++++A+ +DSL+D+ + L +S
Sbjct: 4 SYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYS 63
Query: 86 MQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWV 145
+Q P ++ G + + L L + ++ L + L ++ L+S + V
Sbjct: 64 LQ-PADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMND--PGVGIIV 120
Query: 146 VGIMLSVTLVKLLLVVYCRAFTNEI-VKAYAQD--HF-FDVITNIIGLVAVLLANYIDDW 201
+ L TL+ LV + R + +A D H+ DV+ N L+A+ L+ Y
Sbjct: 121 TLVALICTLI---LVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHR 177
Query: 202 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 261
D + A+ + +Y + + E V SL+ R+ E Q++ + + + +R
Sbjct: 178 ADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRT 236
Query: 262 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 296
G F+++ + + ++PL +AH I + +++ L
Sbjct: 237 RQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQAL 271
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 50.5 bits (121), Expect = 4e-07
Identities = 48/281 (17%), Positives = 99/281 (35%), Gaps = 40/281 (14%)
Query: 32 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDL-LSGFILWFTAFSMQTPN 90
E L +RIS ++ A + + SGS++II + SL+D ++ L + + P
Sbjct: 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPR 77
Query: 91 PYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIML 150
++P G ++PL + + +++A L L ++ +L +L+ + + L
Sbjct: 78 DARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPG-----HAIAYTL 132
Query: 151 SVTLVKLLLVVY----CRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYID----DWM 202
+ R + ++ + + VA A + +
Sbjct: 133 VSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHL 192
Query: 203 ----DPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHID- 257
DP+ ++ L I TV + ++ P LQ+ H
Sbjct: 193 VVYADPMVLALVCLVFIPLPLGTVKSALREIL--LMTPNELQQ---------SIESHAHE 241
Query: 258 TVRAYTFGSHY----------FVEVDIVLPASMPLQEAHDI 288
V Y F S++ F+E+ ++P + D
Sbjct: 242 IVEKYGFPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDW 282
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 48.1 bits (115), Expect = 2e-06
Identities = 53/292 (18%), Positives = 119/292 (40%), Gaps = 34/292 (11%)
Query: 35 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLS-GFILWFTAFSMQTPNPYQ 93
+ I+ + N+ ++ + +GSLA++A L L D L+ L + + +
Sbjct: 23 RLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATK-R 81
Query: 94 YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIM---L 150
+ G KR++ L + A ++ + L I+ E+++ L ++ + L
Sbjct: 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRL------LAPPPIHYSGMLVVAIIGL 135
Query: 151 SVTLVKLLLVVYCRAFTNEIVKAYAQDHFF-DVITNIIGLVAVLLANYID-DWMDPVGAI 208
V LV LL+ + AY H D + ++ ++A ++ + W+DP+ +I
Sbjct: 136 VVNLVSALLLHKGHEENLNMRGAYL--HVLGDALGSVGVIIAAIVIRFTGWSWLDPILSI 193
Query: 209 ILALYTI-RTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT---- 263
++AL + W + E++N L+ + K+ +++ I V +
Sbjct: 194 VIALLILSSAWPLLK-ESLNILLEGVPEGIDIDKV-------REALLRIPGVASVHDLHV 245
Query: 264 ---FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 312
G + + + +V+ + +A + + +L IE + L+ E
Sbjct: 246 WSITGGEHALTLHVVVD---EVADADAALDQIVRRLLEKYGIEHVTIQLETE 294
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 31.4 bits (71), Expect = 0.79
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 118 LQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQD 177
IL L ++ L+ ++ + GI V L K+LL NE++ Y+QD
Sbjct: 464 PGRILSELAQQEQKSEEVFLSAGKDSLLPGIQDGVRLAKVLL-------QNEVLDYYSQD 516
Query: 178 --HFFDVITN 185
+++ +I
Sbjct: 517 DEYYYTIIVK 526
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 29.5 bits (66), Expect = 2.8
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 61 AIIASTLDSLLDLLSGFILW-FTAFSMQTPNPYQYPIGKKRMQPLGI--LVFASVMATLG 117
AII ++++SL SGF+++ F + Q N PIG G+ +++ +ATL
Sbjct: 287 AIITTSINSLTSFFSGFVVFSFLGYMAQKHN---VPIGDVAKDGPGLIFIIYPEAIATLP 343
Query: 118 LQII--------------------LESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 157
L + +ES+ T + +E +F L + +E + + I+LS L+ L
Sbjct: 344 LSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKF-LHRHRELFTLFIVLSTFLISL 402
Query: 158 LLV 160
V
Sbjct: 403 FCV 405
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.0 bits (66), Expect = 4.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 109 FASVMATLGLQI-ILESLRTLVSNED 133
FAS A+LG ++ I+E+L ++ ED
Sbjct: 187 FASAYASLGAEVTIVEALPRILPGED 212
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in
eukaryotes is mediated by at least in part by the
budding and fusion of intracellular transport vesicles
that selectively carry cargo proteins and lipids from
donor to acceptor organelles. The two main classes of
vesicular carriers within the endocytic and the
biosynthetic pathways are COP- and clathrin-coated
vesicles. Formation of COPII vesicles requires the
ordered assembly of the coat built from several
cytosolic components GTPase Sar1, complexes of
Sec23-Sec24 and Sec13-Sec31. The process is initiated
by the conversion of GDP to GTP by the GTPase Sar1
which then recruits the heterodimeric complex of Sec23
and Sec24. This heterodimeric complex generates the
pre-budding complex. The final step leading to membrane
deformation and budding of COPII-coated vesicles is
carried by the heterodimeric complex Sec13-Sec31. The
members of this CD belong to the Sec23-like family. Sec
24 is very similar to Sec23. The Sec23 and Sec24
polypeptides fold into five distinct domains: a
beta-barrel, a zinc finger, a vWA or trunk, an all
helical region and a carboxy Gelsolin domain. The
members of this subgroup carry a partial MIDAS motif
and have the overall Para-Rossmann type fold that is
characteristic of this superfamily.
Length = 244
Score = 28.4 bits (64), Expect = 4.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 52 YASVKSGSLAIIASTLDSLLDLLSGF 77
Y ++KSG LA L S LD L G
Sbjct: 14 YNAIKSGLLATACEALLSNLDNLPGD 39
>gnl|CDD|234772 PRK00458, PRK00458, S-adenosylmethionine decarboxylase proenzyme;
Provisional.
Length = 127
Score = 27.3 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 29 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDS 69
R E + + +ANM L K + K G +++IA L+S
Sbjct: 35 ERLEQIVKEAAKIANMTLLDIKSWKFGKKGGVSVIALVLES 75
>gnl|CDD|130023 TIGR00948, 2a75, L-lysine exporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 177
Score = 27.3 bits (61), Expect = 7.7
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 41 VANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSG---FILWFTAFS----MQTPNPYQ 93
+ ++VL AA V+ G A++A++ L L G F+LW+ + + P
Sbjct: 31 ICDLVLIAAGVF-----GVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAWRGPGALV 85
Query: 94 YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGI-MLSV 152
P K+M +L + L + L+++ + + QF+ + +W+ ++
Sbjct: 86 -PDEPKKMGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGLQFS---DLLRWLFAAGAIAA 141
Query: 153 TLVKLLLV 160
+LV +
Sbjct: 142 SLVWFASL 149
>gnl|CDD|233061 TIGR00629, uvde, UV damage endonuclease UvdE. All proteins in this
family for which functions are known are UV dimer
endonucleases that function in an alternative nucleotide
excision repair process. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 312
Score = 27.6 bits (61), Expect = 8.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 245 LCWNHHKSIRHID-TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 300
L WN I + + F SH V D+V A L+E ++ ++ Q +L P
Sbjct: 58 LHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHP 114
>gnl|CDD|237123 PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.
Length = 182
Score = 27.4 bits (61), Expect = 8.7
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 31/97 (31%)
Query: 215 IRTWSMTVLENV--NSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEV 272
+RTW M++L N + L R R D + V
Sbjct: 55 LRTWLMSILHNAFIDELRRRRVEA-----------------RRADELA---------VLA 88
Query: 273 DIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 309
D LPA+ QE +++ LPE +RA +HL
Sbjct: 89 DASLPAA---QEHAVRLAQIRDAFFDLPEEQRAALHL 122
>gnl|CDD|224511 COG1595, RpoE, DNA-directed RNA polymerase specialized sigma
subunit, sigma24 homolog [Transcription].
Length = 182
Score = 27.4 bits (61), Expect = 9.4
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 220 MTVLENVNSLVGRSAAPEYLQK-LTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA 278
+ ++S GRS+ +L + L + + + + L
Sbjct: 51 LRAWRAIDSFRGRSSFKAWLYRIARNLAIDRLRKRKRRRARVEEADLLPEEADPAPDLAE 110
Query: 279 SMPLQEAHDIGESLQEKLELLPEIER-AFVHLDYE 312
+ +E + L+ L LP +R AF+ E
Sbjct: 111 LLLAEEELER---LRRALARLPPRQREAFLLRYLE 142
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 27.7 bits (62), Expect = 9.7
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 205 VGAIILALYTIRTWSMTV----LENVNSLVGRSAAPEYLQKLTYLC 246
V A+ L + T ++ + + N++V A E L + +C
Sbjct: 307 VAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVIC 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,719,482
Number of extensions: 1628746
Number of successful extensions: 1789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 50
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)