RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020591
(324 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 142 bits (360), Expect = 1e-40
Identities = 55/283 (19%), Positives = 121/283 (42%), Gaps = 12/283 (4%)
Query: 33 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFSMQTPNP 91
+ A + +L K++A +GS++I+A+ +DSL+D+ + L +S+Q +
Sbjct: 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62
Query: 92 YQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLS 151
+ G + + L L + ++ L + L ++ L+S V + +
Sbjct: 63 -NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPT-----PMTDPGVGVIVTIV 116
Query: 152 VTLVKLLLVVYCRAFTNEI----VKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGA 207
+ ++LV + R V+A + DV+ N L+A+ L+ Y D + A
Sbjct: 117 ALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFA 176
Query: 208 IILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH 267
+ + +Y + + E V SL+ R+ E Q++ + + +R G
Sbjct: 177 LGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPT 235
Query: 268 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310
F+++ + + S+PL +AH + + +++ + +H D
Sbjct: 236 RFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 58.6 bits (142), Expect = 3e-11
Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 249 HHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFV 307
++ + VR G+ YF+E+DI + M +++AH++ +++++ + +IE +
Sbjct: 21 RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80
Query: 308 HLD 310
H++
Sbjct: 81 HVE 83
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 56.6 bits (137), Expect = 1e-10
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 229 LVGRSAAPEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHD 287
L+ PE ++++ + + ++ G F+E +V+ P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 288 IGESLQEKL-ELLPEIERAFVHLDYEYTHRPEHAQAH 323
+ + L+ L + P ++ A +H++ PE +
Sbjct: 62 LCDELERALAQAFPGLQ-ATIHVE------PEGERKR 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 37/320 (11%), Positives = 80/320 (25%), Gaps = 88/320 (27%)
Query: 56 KSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 115
K+ +A+ + + I W + P +L ++
Sbjct: 163 KT-WVALDVCLSYKVQCKMDFKIFWLN-------------LKNCN-SPETVL---EMLQK 204
Query: 116 LGLQIILESLRTLVSNEDQFNLTKEQ-EQWVVGIMLSVTLVKLLLV---VYCRAFTNEIV 171
L QI + + + L + + ++ S LLV V +
Sbjct: 205 LLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAW 259
Query: 172 KAYAQDHFFD------VITNIIGLVAVLLANY-----IDDWMDPV----GAIILALYTIR 216
A F+ + T + L A +D + +L Y
Sbjct: 260 NA------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-- 311
Query: 217 TWSMTVLE------NVN----SLVGRS-----AAPEYLQKLTYLCWNHHKSIRH-IDTVR 260
+ N S++ S A + + C I ++ +
Sbjct: 312 --DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESSLNVLE 367
Query: 261 AYTFGSHY-----FVE-VDI---VLP---ASMPLQEAHDIGESLQEK--LELLPEIERAF 306
+ + F I +L + + + L + +E P+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 307 VH---LDYEYTHRPEHAQAH 323
+ L+ + H
Sbjct: 428 IPSIYLELK-VKLENEYALH 446
Score = 34.8 bits (79), Expect = 0.037
Identities = 29/245 (11%), Positives = 74/245 (30%), Gaps = 72/245 (29%)
Query: 106 ILVFA-SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 164
+ VF + + + + + ++++S E+ ++ ++ V+ L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--------VSGTLRLFWTLLS 73
Query: 165 AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM---------DPVGAIILALYTI 215
E+V+ + ++ VL NY ++ P + +
Sbjct: 74 K-QEEMVQKFVEE--------------VLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 216 -RTWS-------MTV--LENVNSLVGRSAAPEYLQKLTYLCWNHH------KSIRHIDTV 259
R ++ V L+ L R A E L+ + K+ +D
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL--RQALLE-LRPAKNVLI--DGVLGSGKTWVALDVC 171
Query: 260 RAYTFGSHYFVEVDIVLPASMPLQEAH--DIGESLQEKLELLPEIERAFVHLDYEYTHRP 317
+Y ++ ++ +L +++ +D +T R
Sbjct: 172 LSYKVQCKMDFKI-------------FWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 318 EHAQA 322
+H+
Sbjct: 218 DHSSN 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.009
Identities = 53/335 (15%), Positives = 105/335 (31%), Gaps = 124/335 (37%)
Query: 18 PGMTKEEREN--LAR----------SETLAIRISN-VAN-----MVLFAAK--------- 50
GM + + A+ +T I + V N + F +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 51 ---VYASVKSGSLAIIASTLDSLLDLLSGFI-------LWFTAFSMQTPNPYQYP----I 96
++ ++ G L + + + + L T F T Q P +
Sbjct: 1689 SAMIFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQF---T----Q-PALTLM 1739
Query: 97 GK---KRMQPLGILVFASVMA--TLGLQIILE-SLRTLVSNEDQFNLTKEQEQWVVGIML 150
K + ++ G++ + A +LG E + L S + +M
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG-----EYA--ALAS--------------LADVM- 1777
Query: 151 SV-TLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAII 209
S+ +LV++ V+ R T + A +D +I + +A + + ++
Sbjct: 1778 SIESLVEV---VFYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYVV 1830
Query: 210 LALYTIRTWSMTVLE--NVNS----LV--GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 261
+ W ++E N N V G A L +T + N K ++ ID +
Sbjct: 1831 ERVGKRTGW---LVEIVNYNVENQQYVAAGDLRA---LDTVTNVL-NFIK-LQKIDIIE- 1881
Query: 262 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 296
L S+ L+E ++ L
Sbjct: 1882 --------------LQKSLSLEE-------VEGHL 1895
Score = 35.8 bits (82), Expect = 0.020
Identities = 46/295 (15%), Positives = 80/295 (27%), Gaps = 91/295 (30%)
Query: 30 RSETLA---IRIS-NVANMVLFAAKVYASVKSGSLAIIASTLD---------SLLDLLSG 76
R TL+ + V F A ++ I+ + + +L+
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 77 FILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL-RTLVSNED-- 133
F L + + ++ Q+ V L + L + D
Sbjct: 64 F-LGYVSSLVEPSKVGQF---------------DQV-----LNLCLTEFENCYLEGNDIH 102
Query: 134 --QFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA--FTNEIVKAYAQDHFFD-VITNIIG 188
L +E + ++ K L+ Y A + F V
Sbjct: 103 ALAAKLLQENDT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 189 LVAVL-----LANYIDDWMDPVGAIILA-LYT-----IRTWSMTVLENVNSLV--GRSAA 235
LVA+ +Y ++ L LY + E ++ L+ A
Sbjct: 156 LVAIFGGQGNTDDYFEE---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPL----QEAH 286
+ Q L L W + S Y + + P S PL Q AH
Sbjct: 207 KVFTQGLNILEWLENPSNTP---------DKDYLLSI----PISCPLIGVIQLAH 248
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.17
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 14/42 (33%)
Query: 24 ERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIAS 65
E++ L + + + K+YA + +LAI A+
Sbjct: 18 EKQALKKLQA--------------SLKLYADDSAPALAIKAT 45
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 28.2 bits (63), Expect = 3.5
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 119 QIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDH 178
Q +L LR+ + + + +E +Q + + + K +A
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAA---------------QQEKDWADYL 290
Query: 179 FFDVITNIIGLVAVLLANYID 199
F D ++IGL +L Y++
Sbjct: 291 FRDG--SMIGLNKDILCQYVE 309
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 28.0 bits (62), Expect = 4.0
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 98 KKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 157
+ PL F + L + L L + +V + + + +
Sbjct: 3 ITKPFPLPTGYFGIPLGLAALSLAWFHLENLFPAARMVSDV----LGIVASAVWILFILM 58
Query: 158 LLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRT 217
F E V+A +I + +L+ + + W + +++ + TI
Sbjct: 59 YAYKLRYYF--EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQ 116
Query: 218 WSMTVL 223
+ L
Sbjct: 117 LLFSTL 122
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family
fold, regulation of apoptosis, mitochondri
apoptosis-apoptosis regulator complex; 2.49A {Homo
sapiens}
Length = 189
Score = 27.3 bits (59), Expect = 6.2
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 110 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQW----VVGIMLSVTLVKLLLVVYCRA 165
+ +G + + ++ E + V+ + S + +V +
Sbjct: 73 LETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLIS 132
Query: 166 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM 202
F + K + I + + +L DW+
Sbjct: 133 FGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWL 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,992,904
Number of extensions: 296905
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 18
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)