RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 020591
         (324 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score =  106 bits (265), Expect = 3e-28
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 1/204 (0%)

Query: 29  ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQT 88
            R  + A   +     +L   K++A   +GS++I+A+ +DSL+D+ +             
Sbjct: 2   GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61

Query: 89  PNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGI 148
           P    +  G  + + L  L  +  ++   L + L  ++ L+S     +        +V +
Sbjct: 62  PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 149 MLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAI 208
           + ++ LV        R   ++ V+A    +  DV+ N   L+A+ L+ Y     D + A+
Sbjct: 122 ICTIILV-SFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 180

Query: 209 ILALYTIRTWSMTVLENVNSLVGR 232
            + +Y + +      E V SL+ R
Sbjct: 181 GIGIYILYSALRMGYEAVQSLLDR 204


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 73.2 bits (180), Expect = 3e-17
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 233 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESL 292
           +   E  Q++  +       +     +R    G   F+++ + +  S+PL +AH + + +
Sbjct: 1   ALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQV 59

Query: 293 QEKLELLPEIERAFVHLD 310
           ++ +          +H D
Sbjct: 60  EQAILRRFPGSDVIIHQD 77


>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
           thermophilus [TaxId: 274]}
          Length = 82

 Score = 66.7 bits (163), Expect = 7e-15
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 236 PEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQE 294
           PE ++++        +     +  ++    G   F+E  +V+    P++EAH + + L+ 
Sbjct: 4   PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELER 63

Query: 295 KLELLPEIERAFVHLDYE 312
            L       +A +H++ E
Sbjct: 64  ALAQAFPGLQATIHVEPE 81


>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 316

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 213 YTIRTWSMTVLENVNSLVGRSAAPEYLQKLTY-LC---WNHHKSIR 254
             I+  S+ ++ +  +          +    Y L    W   +S  
Sbjct: 249 TPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRN 294


>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
           delta-isomerase [Pseudomonas aeruginosa PA7] 
           gi|150963370|gb|ABR85395.1| muconolactone
           delta-isomerase [Pseudomonas aeruginosa PA7]  E=1e-44
           s/c=1.89 id=85% cov=101%
          Length = 96

 Score = 25.8 bits (57), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 268 YFVEVDIVLPASMPLQEAHDI 288
           + V++ + LPA M  Q A  +
Sbjct: 3   FHVKMTVKLPADMDPQRAERL 23


>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 101

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 21 TKEERENLARSETLAIRISNVANMVLFAAKVYASVKSG 58
          T  + + L    TL I +S+V N+ L     +      
Sbjct: 6  THYDLKELRAGTTLEISLSSVNNVRLMTGANFQRFTEL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,179,043
Number of extensions: 52644
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 9
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)