Query 020593
Match_columns 324
No_of_seqs 305 out of 1789
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 2.4E-28 5.3E-33 223.6 24.6 152 82-239 31-185 (223)
2 PF09335 SNARE_assoc: SNARE as 99.8 4.4E-20 9.6E-25 152.1 14.3 121 118-239 1-123 (123)
3 PRK10847 hypothetical protein; 99.8 5.7E-18 1.2E-22 154.8 17.8 149 89-243 18-181 (219)
4 COG0586 DedA Uncharacterized m 99.8 3.7E-17 8E-22 148.4 22.5 131 114-245 32-169 (208)
5 KOG3140 Predicted membrane pro 99.6 8.1E-15 1.8E-19 137.5 11.8 143 102-247 96-241 (275)
6 COG1238 Predicted membrane pro 99.3 1.8E-10 3.9E-15 100.5 15.5 147 89-241 9-157 (161)
7 PF06695 Sm_multidrug_ex: Puta 93.9 1.4 3E-05 36.8 11.6 96 133-229 16-118 (121)
8 PRK12821 aspartyl/glutamyl-tRN 89.6 8.3 0.00018 39.2 13.3 26 122-147 100-125 (477)
9 PF01102 Glycophorin_A: Glycop 88.2 0.76 1.6E-05 38.5 4.2 62 252-315 60-121 (122)
10 TIGR02359 thiW thiW protein. L 87.9 15 0.00033 32.2 12.4 33 119-151 33-65 (160)
11 PRK01844 hypothetical protein; 83.0 3.5 7.5E-05 31.4 5.2 25 133-157 3-27 (72)
12 PRK10478 putative PTS system f 79.2 51 0.0011 32.7 13.3 24 260-283 315-338 (359)
13 PRK00523 hypothetical protein; 76.2 7.6 0.00017 29.5 5.1 22 136-157 7-28 (72)
14 PF07155 ECF-ribofla_trS: ECF- 73.5 11 0.00023 32.5 6.3 33 119-151 37-69 (169)
15 PRK11404 putative PTS system 72.7 1.2E+02 0.0026 31.2 19.5 72 217-294 400-477 (482)
16 PRK15083 PTS system mannitol-s 72.6 75 0.0016 33.8 13.5 28 258-285 313-340 (639)
17 PF12794 MscS_TM: Mechanosensi 72.6 99 0.0021 30.2 14.7 16 118-133 58-73 (340)
18 COG5336 Uncharacterized protei 67.8 25 0.00053 29.0 6.6 20 217-244 51-70 (116)
19 PF03672 UPF0154: Uncharacteri 66.3 9.6 0.00021 28.4 3.7 22 139-160 2-24 (64)
20 PRK01637 hypothetical protein; 65.8 55 0.0012 30.9 9.9 42 201-242 187-228 (286)
21 PRK13661 hypothetical protein; 64.4 27 0.00057 31.3 6.9 32 119-150 39-70 (182)
22 COG3763 Uncharacterized protei 63.6 19 0.00042 27.2 4.9 35 133-170 3-37 (71)
23 PF08374 Protocadherin: Protoc 58.9 10 0.00022 34.8 3.3 79 230-308 6-94 (221)
24 COG4858 Uncharacterized membra 58.1 43 0.00093 30.4 7.0 57 214-283 160-216 (226)
25 TIGR00261 traB pheromone shutd 57.8 1.5E+02 0.0032 29.7 11.5 36 55-94 240-276 (380)
26 COG3086 RseC Positive regulato 56.8 41 0.00089 29.1 6.4 38 125-162 90-128 (150)
27 PF09835 DUF2062: Uncharacteri 56.1 1.3E+02 0.0027 25.6 14.0 100 192-292 30-152 (154)
28 PF12273 RCR: Chitin synthesis 55.6 9.4 0.0002 31.9 2.4 28 258-285 2-29 (130)
29 PF04246 RseC_MucC: Positive r 55.5 34 0.00073 28.6 5.7 38 125-162 82-121 (135)
30 PF07172 GRP: Glycine rich pro 54.3 28 0.00061 27.8 4.8 21 260-280 6-26 (95)
31 PF06195 DUF996: Protein of un 53.9 1.3E+02 0.0029 25.5 9.2 34 260-293 76-109 (139)
32 PF11368 DUF3169: Protein of u 53.9 52 0.0011 30.5 7.3 25 215-239 8-32 (248)
33 COG4956 Integral membrane prot 53.6 1.5E+02 0.0034 28.9 10.3 13 229-241 118-130 (356)
34 COG2851 CitM H+/citrate sympor 53.1 15 0.00033 36.6 3.6 37 274-315 192-231 (433)
35 KOG3140 Predicted membrane pro 53.1 2.1E+02 0.0046 27.3 11.7 88 187-280 128-218 (275)
36 COG0398 Uncharacterized conser 53.0 1.9E+02 0.004 26.6 13.0 40 117-156 68-108 (223)
37 PRK12489 anaerobic C4-dicarbox 51.7 2.8E+02 0.0061 28.3 12.9 34 260-293 173-206 (443)
38 PRK09796 PTS system cellobiose 50.9 3E+02 0.0064 28.4 19.4 21 259-279 434-454 (472)
39 PRK11677 hypothetical protein; 50.3 35 0.00075 29.1 5.0 22 137-158 3-24 (134)
40 PF14143 YrhC: YrhC-like prote 50.2 1.1E+02 0.0024 23.3 7.8 12 230-241 20-31 (72)
41 PF12822 DUF3816: Protein of u 47.8 16 0.00036 31.2 2.7 32 119-150 30-61 (172)
42 PRK09609 hypothetical protein; 47.1 43 0.00094 32.5 5.6 23 219-241 172-194 (312)
43 COG1263 PtsG Phosphotransferas 46.0 3.2E+02 0.007 27.4 18.4 24 258-281 351-374 (393)
44 PF06305 DUF1049: Protein of u 45.3 45 0.00098 24.1 4.4 30 264-293 31-60 (68)
45 PF03773 DUF318: Predicted per 45.2 2.8E+02 0.0061 26.4 15.0 114 139-282 20-138 (307)
46 PF04995 CcmD: Heme exporter p 43.7 74 0.0016 21.7 5.0 14 280-293 30-43 (46)
47 PF06695 Sm_multidrug_ex: Puta 43.1 92 0.002 25.8 6.4 35 115-149 82-120 (121)
48 PRK11677 hypothetical protein; 41.1 23 0.00049 30.2 2.4 25 258-282 3-27 (134)
49 PRK01844 hypothetical protein; 37.8 95 0.0021 23.7 5.1 28 261-288 7-34 (72)
50 PF08006 DUF1700: Protein of u 37.2 2.8E+02 0.0061 24.1 12.4 33 134-167 141-173 (181)
51 PRK10862 SoxR reducing system 37.0 83 0.0018 27.2 5.4 23 137-159 103-125 (154)
52 COG3105 Uncharacterized protei 36.9 48 0.001 28.2 3.7 30 256-285 6-35 (138)
53 PF04277 OAD_gamma: Oxaloaceta 36.9 1.5E+02 0.0033 22.0 6.3 18 260-277 9-26 (79)
54 COG4615 PvdE ABC-type sideroph 36.7 4.6E+02 0.01 27.0 11.0 21 194-214 105-126 (546)
55 COG4064 MtrG Tetrahydromethano 36.4 59 0.0013 24.6 3.7 23 127-149 50-72 (75)
56 COG3639 ABC-type phosphate/pho 36.4 2.4E+02 0.0051 27.0 8.9 20 49-68 26-45 (283)
57 PF13807 GNVR: G-rich domain o 35.3 57 0.0012 24.8 3.7 30 113-142 49-79 (82)
58 PF14012 DUF4229: Protein of u 35.2 1.9E+02 0.0041 21.6 6.8 30 137-166 33-62 (69)
59 PF09515 Thia_YuaJ: Thiamine t 35.1 2.5E+02 0.0054 24.9 8.2 66 214-283 105-172 (177)
60 PF01102 Glycophorin_A: Glycop 34.4 74 0.0016 26.7 4.5 25 127-157 67-91 (122)
61 KOG4694 Predicted membrane pro 33.6 1.8E+02 0.0038 25.5 6.7 32 204-237 77-108 (174)
62 PF06295 DUF1043: Protein of u 33.1 65 0.0014 27.0 4.0 20 139-158 1-20 (128)
63 PF06570 DUF1129: Protein of u 33.1 1.5E+02 0.0032 26.6 6.6 57 214-283 145-201 (206)
64 COG5524 Bacteriorhodopsin [Gen 33.0 1.5E+02 0.0033 28.4 6.8 70 197-283 113-182 (285)
65 PRK00523 hypothetical protein; 30.8 1.6E+02 0.0034 22.5 5.2 29 260-288 7-35 (72)
66 TIGR03546 conserved hypothetic 30.8 3.6E+02 0.0078 23.4 8.5 54 187-241 22-82 (154)
67 COG2059 ChrA Chromate transpor 29.9 4.2E+02 0.0091 23.9 11.9 88 189-283 50-138 (195)
68 PF15102 TMEM154: TMEM154 prot 29.9 13 0.00028 32.1 -0.8 19 295-313 98-116 (146)
69 PRK00191 tatA twin arginine tr 29.6 1.4E+02 0.0029 23.5 4.9 16 279-294 38-53 (84)
70 COG4732 Predicted membrane pro 29.2 86 0.0019 27.5 4.1 28 118-145 37-65 (177)
71 PF11190 DUF2976: Protein of u 29.2 2.9E+02 0.0062 21.8 7.7 58 220-282 26-84 (87)
72 PF07074 TRAP-gamma: Transloco 28.5 2E+02 0.0043 25.5 6.3 55 216-284 20-74 (170)
73 PRK10983 putative inner membra 28.4 5.8E+02 0.013 25.1 16.2 21 207-231 247-267 (368)
74 TIGR00383 corA magnesium Mg(2+ 28.3 1.6E+02 0.0034 27.9 6.3 58 214-281 257-314 (318)
75 PF00558 Vpu: Vpu protein; In 28.3 1E+02 0.0022 24.1 3.9 7 299-305 57-63 (81)
76 PF04120 Iron_permease: Low af 28.2 3.7E+02 0.0081 22.8 8.8 58 88-156 3-62 (132)
77 PF09335 SNARE_assoc: SNARE as 28.1 3E+02 0.0064 21.6 10.0 39 117-155 82-121 (123)
78 PRK15419 proline:sodium sympor 27.7 6.7E+02 0.014 25.6 13.5 38 262-299 456-497 (502)
79 TIGR03141 cytochro_ccmD heme e 27.7 2E+02 0.0043 19.5 5.2 8 283-290 34-41 (45)
80 TIGR02121 Na_Pro_sym sodium/pr 27.7 6.5E+02 0.014 25.5 19.1 23 218-241 156-178 (487)
81 COG4852 Predicted membrane pro 26.9 3.8E+02 0.0082 22.5 8.8 33 101-133 44-83 (134)
82 PF09512 ThiW: Thiamine-precur 26.8 1.1E+02 0.0023 26.7 4.3 14 124-137 35-48 (150)
83 PF11241 DUF3043: Protein of u 26.6 2.1E+02 0.0044 25.5 6.1 17 151-167 119-135 (170)
84 COG4280 Predicted membrane pro 26.6 2.1E+02 0.0045 26.4 6.2 64 214-292 32-95 (236)
85 PF01618 MotA_ExbB: MotA/TolQ/ 26.0 2.7E+02 0.0058 23.2 6.6 24 262-286 107-130 (139)
86 KOG4783 Uncharacterized conser 25.9 3.6E+02 0.0078 21.8 7.1 21 227-247 41-61 (102)
87 PF02687 FtsX: FtsX-like perme 25.0 3.2E+02 0.0068 20.9 7.2 18 266-283 99-116 (121)
88 PRK09765 PTS system 2-O-a-mann 25.0 8.6E+02 0.019 25.9 18.2 23 260-282 602-624 (631)
89 COG1238 Predicted membrane pro 24.8 1.6E+02 0.0034 25.9 5.0 52 195-246 31-82 (161)
90 PF14163 SieB: Superinfection 24.7 3E+02 0.0066 23.2 6.8 25 117-141 14-42 (151)
91 COG1422 Predicted membrane pro 24.7 1.1E+02 0.0025 27.8 4.2 13 301-313 95-107 (201)
92 PF11085 YqhR: Conserved membr 24.6 2.1E+02 0.0045 25.5 5.8 15 54-68 18-32 (173)
93 KOG1109 Vacuole membrane prote 24.5 13 0.00028 37.1 -2.0 87 142-228 217-320 (440)
94 PF15048 OSTbeta: Organic solu 24.5 72 0.0016 26.9 2.7 26 253-278 32-57 (125)
95 PRK04778 septation ring format 24.3 53 0.0012 34.3 2.4 51 260-312 4-56 (569)
96 PF11119 DUF2633: Protein of u 24.1 2.9E+02 0.0064 20.2 5.6 20 275-294 25-44 (59)
97 PF09945 DUF2177: Predicted me 24.1 4.4E+02 0.0095 22.2 9.1 10 124-133 76-85 (128)
98 PRK10712 PTS system fructose-s 24.1 8.7E+02 0.019 25.6 18.7 27 259-285 531-557 (563)
99 PF07406 NICE-3: NICE-3 protei 23.8 98 0.0021 27.8 3.7 39 265-303 17-55 (186)
100 COG0586 DedA Uncharacterized m 23.6 5.4E+02 0.012 23.1 8.9 68 83-161 97-167 (208)
101 COG2261 Predicted membrane pro 23.3 2.1E+02 0.0046 22.3 4.9 35 125-159 41-80 (82)
102 PRK15419 proline:sodium sympor 23.1 8.1E+02 0.017 24.9 16.3 28 210-241 155-182 (502)
103 KOG1314 DHHC-type Zn-finger pr 22.9 2.6E+02 0.0057 27.8 6.6 86 204-289 125-217 (414)
104 COG4720 Predicted membrane pro 22.8 2.5E+02 0.0054 25.1 5.9 54 101-156 15-76 (177)
105 PF06781 UPF0233: Uncharacteri 22.8 1.7E+02 0.0037 23.1 4.4 21 55-75 31-52 (87)
106 PF15420 Abhydrolase_9_N: Alph 22.7 5.8E+02 0.013 23.2 9.7 79 207-288 80-162 (208)
107 PF01544 CorA: CorA-like Mg2+ 22.5 42 0.00091 30.8 1.1 58 216-281 235-292 (292)
108 PRK10929 putative mechanosensi 22.4 9.2E+02 0.02 27.8 11.6 90 60-153 836-932 (1109)
109 PF04367 DUF502: Protein of un 22.2 3.1E+02 0.0066 22.0 6.0 30 142-171 7-36 (108)
110 PF08507 COPI_assoc: COPI asso 22.2 2.8E+02 0.0061 23.1 6.0 12 229-240 70-81 (136)
111 PF05552 TM_helix: Conserved T 22.1 1.3E+02 0.0028 20.9 3.3 24 144-167 17-44 (53)
112 COG3368 Predicted permease [Ge 22.1 2.7E+02 0.0058 28.5 6.6 25 216-240 218-242 (465)
113 TIGR00220 mscL large conductan 21.6 2.4E+02 0.0051 23.8 5.3 9 281-289 90-98 (127)
114 COG4327 Predicted membrane pro 21.4 1.6E+02 0.0036 23.6 4.0 26 47-72 11-36 (101)
115 PRK01026 tetrahydromethanopter 21.4 1.6E+02 0.0034 22.8 3.8 22 127-148 50-71 (77)
116 PRK10429 melibiose:sodium symp 21.2 2E+02 0.0043 28.7 5.7 9 280-288 437-445 (473)
117 PF12732 YtxH: YtxH-like prote 21.2 2E+02 0.0044 21.3 4.5 28 140-167 5-36 (74)
118 PF05915 DUF872: Eukaryotic pr 21.2 2.7E+02 0.0058 23.0 5.5 18 54-71 39-56 (115)
119 PF02667 SCFA_trans: Short cha 21.1 9.1E+02 0.02 24.8 13.4 19 212-230 133-151 (453)
120 PF11044 TMEMspv1-c74-12: Plec 20.9 3E+02 0.0065 19.1 4.7 18 265-282 13-30 (49)
121 COG3105 Uncharacterized protei 20.4 2.6E+02 0.0056 23.8 5.2 23 137-159 8-30 (138)
122 PF02674 Colicin_V: Colicin V 20.3 4.8E+02 0.01 21.3 13.5 44 124-168 8-51 (146)
123 KOG4112 Signal peptidase subun 20.2 2.1E+02 0.0046 23.0 4.4 28 276-308 72-99 (101)
124 COG0598 CorA Mg2+ and Co2+ tra 20.2 1.6E+02 0.0035 28.2 4.7 58 214-281 261-318 (322)
125 TIGR02840 spore_YtaF putative 20.1 6.4E+02 0.014 22.7 11.8 40 123-162 42-83 (206)
126 PF11286 DUF3087: Protein of u 20.1 1.7E+02 0.0037 25.9 4.3 17 260-276 51-67 (165)
127 PF04971 Lysis_S: Lysis protei 20.0 1.6E+02 0.0036 22.2 3.6 31 254-284 29-60 (68)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=223.56 Aligned_cols=152 Identities=23% Similarity=0.450 Sum_probs=133.8
Q ss_pred hhhhhHHHHHHHHHhcChhHHHHH-HHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 020593 82 FEKVLFPLMQWEATAFGRPVLAIV-LIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-R 159 (324)
Q Consensus 82 ~~~~l~~l~~w~~~~~G~p~~~l~-~i~~~~~~~~~~iP~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR~~-r 159 (324)
.....+.+++|+++ .| ++++++ |++.++..++.++|++++++++|++||+++|++++++|+++|++++|+++|++ |
T Consensus 31 ~~~~~~~l~~~i~~-~g-~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 31 LLLDPETLREWIQA-YG-ALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred hccCHHHHHHHHHH-cC-chHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34566789999987 46 676766 66667777777899999999999999999999999999999999999999987 8
Q ss_pred HHHHHHhhhchHHHHHHHHHHcCCchhhHHHHHHHhccc-chhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHH
Q 020593 160 DRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGR 238 (324)
Q Consensus 160 ~~i~~~l~~~~~~~~l~~l~~~~~~~~g~~~v~l~Rl~P-~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~ 238 (324)
++.+++++++++.+++++..+++ |++.++++|++| +|++++||++|++++++++|.++|.+|++|++++|+++|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 109 DWVLKFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHHHHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99998888777766666655554 799999999999 6999999999999999999999999999999999999997
Q ss_pred h
Q 020593 239 L 239 (324)
Q Consensus 239 ~ 239 (324)
.
T Consensus 185 ~ 185 (223)
T COG0398 185 A 185 (223)
T ss_pred H
Confidence 3
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.84 E-value=4.4e-20 Score=152.08 Aligned_cols=121 Identities=29% Similarity=0.520 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhchHHHHHHHHHHcCCchhhHHHHHHHhc
Q 020593 118 IPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFR-DRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRV 196 (324)
Q Consensus 118 iP~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR~~r-~~i~~~l~~~~~~~~l~~l~~~~~~~~g~~~v~l~Rl 196 (324)
+|++++++++|++||++.|++++.+|+++|+.++|++||+++ +...++..++++.+++++..+ ..++||+..+++.|+
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~~~~ 79 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIER-WFQKYGFWVLFLSRF 79 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH-HHhhhhHHHHHHHHH
Confidence 699999999999999999999999999999999999999884 666666655444444333222 223358999999999
Q ss_pred cc-chhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHh
Q 020593 197 SP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRL 239 (324)
Q Consensus 197 ~P-~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~ 239 (324)
+| +|++++||++|++++++++|++++++|.+|++.+++++|+.
T Consensus 80 ~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 80 IPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99 59999999999999999999999999999999999999963
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.79 E-value=5.7e-18 Score=154.83 Aligned_cols=149 Identities=16% Similarity=0.293 Sum_probs=109.5
Q ss_pred HHHHHHHhcChhHHH-HHHHHHHHh---hccccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 89 LMQWEATAFGRPVLA-IVLIASLAL---FPVFLIPSGPSMWLAGMIFG-------YGLGFVIIMVGTTIGMVLPYWVGLL 157 (324)
Q Consensus 89 l~~w~~~~~G~p~~~-l~~i~~~~~---~~~~~iP~~~l~i~aG~lFG-------~~~G~l~s~ig~~lGa~l~F~lgR~ 157 (324)
+.+++++ +| .++. ++++..+.- ....++|++.+.+++|++.+ ++..++++++|+++|+.++|++||+
T Consensus 18 ~~~~~~~-~g-~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~ 95 (219)
T PRK10847 18 LAELVAQ-YG-VWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL 95 (219)
T ss_pred HHHHHHH-hh-HHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566654 56 3432 233333322 22357899999999998875 4466888999999999999999998
Q ss_pred H-HHHHHHHhhhc---hHHHHHHHHHHcCCchhhHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHH
Q 020593 158 F-RDRIHQWLKRW---PQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIY 233 (324)
Q Consensus 158 ~-r~~i~~~l~~~---~~~~~l~~l~~~~~~~~g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~ 233 (324)
+ ++.+.++.++. ++.++.++..++ ||.+.+++.|++|+-++++++++|+++|++++|++.+.+|.++|+.++
T Consensus 96 ~G~~~l~~~~~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~ 171 (219)
T PRK10847 96 FGEKLFSNPNSKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLF 171 (219)
T ss_pred hCHHHhhccccccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 8 44444322221 112222333222 478899999999976688999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 020593 234 IYSGRLIRTL 243 (324)
Q Consensus 234 ~~~G~~l~~l 243 (324)
+++|..+++.
T Consensus 172 ~~~Gy~~g~~ 181 (219)
T PRK10847 172 TYAGYFFGTL 181 (219)
T ss_pred HHHHHHHcCC
Confidence 9999998864
No 4
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.78 E-value=3.7e-17 Score=148.41 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=106.3
Q ss_pred ccccCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhc-hHHHHHHHHHHcCCchh
Q 020593 114 PVFLIPSGPSMWLAGMIFG-----YGLGFVIIMVGTTIGMVLPYWVGLLFR-DRIHQWLKRW-PQQAAMLRLAAEGSWLH 186 (324)
Q Consensus 114 ~~~~iP~~~l~i~aG~lFG-----~~~G~l~s~ig~~lGa~l~F~lgR~~r-~~i~~~l~~~-~~~~~l~~l~~~~~~~~ 186 (324)
...++|++++++++|++-+ ++..++.+++|+++|+.+.|++||+++ +.+.++.++. .+.+.+++. ++...+|
T Consensus 32 ~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a-~~~f~r~ 110 (208)
T COG0586 32 VGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKA-ELLFERH 110 (208)
T ss_pred cCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHH-HHHHHHc
Confidence 4568999999999999865 567788899999999999999999984 5555544421 122223332 2222236
Q ss_pred hHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhh
Q 020593 187 QFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLAD 245 (324)
Q Consensus 187 g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~ 245 (324)
|.+.+++.|++|.-++++++.+|+++||+++|.+.+++|.+.|..++++.|..+++..+
T Consensus 111 G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~ 169 (208)
T COG0586 111 GLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVID 169 (208)
T ss_pred CchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 89999999999998999999999999999999999999999999999999999987654
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=8.1e-15 Score=137.54 Aligned_cols=143 Identities=22% Similarity=0.397 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhhccccCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhchHHHHHHHHH
Q 020593 102 LAIVLIASLALFPVFLIPSGPS-MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIHQWLKRWPQQAAMLRLA 179 (324)
Q Consensus 102 ~~l~~i~~~~~~~~~~iP~~~l-~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR~~-r~~i~~~l~~~~~~~~l~~l~ 179 (324)
..+.|++.|+....+.+||..+ .+.+|++||.+.|++++...+++|+++||++++.+ |.++.+++..+.+.-+.+ ..
T Consensus 96 ~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~-~~ 174 (275)
T KOG3140|consen 96 VLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQD-VE 174 (275)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH-HH
Confidence 4466788898888899998776 69999999999999999999999999999999988 888888776543332222 22
Q ss_pred HcCCchhhHHHHHHHhcccc-hhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhc
Q 020593 180 AEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVK 247 (324)
Q Consensus 180 ~~~~~~~g~~~v~l~Rl~P~-P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~ 247 (324)
.+.+ +-+..+.+.|++|+ |.++.|+++++.++++..|++++++|++|..++++-.|+.++++.+.+
T Consensus 175 ~~~~--~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~ 241 (275)
T KOG3140|consen 175 LNRN--SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSAS 241 (275)
T ss_pred hccc--chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccc
Confidence 2222 13778999999996 999999999999999999999999999999999999999998876544
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.27 E-value=1.8e-10 Score=100.53 Aligned_cols=147 Identities=12% Similarity=0.145 Sum_probs=105.1
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhccccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 020593 89 LMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQW-L 166 (324)
Q Consensus 89 l~~w~~~~~G~p~~~l~~i~~~~~~~~~~iP~~~l~i~aG~l-FG~~~G~l~s~ig~~lGa~l~F~lgR~~r~~i~~~-l 166 (324)
..+|..+.+++. .+|+..++-.+++|+|.+++.+..-.. ..++.-.+++.+|+++|++++|++||+..+.+.+. .
T Consensus 9 ~~~~~~~~~a~~---~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~ 85 (161)
T COG1238 9 TLSLMSQAYAYA---GLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWF 85 (161)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhh
Confidence 344444433322 345556666677889999874322221 56777888999999999999999999986665553 2
Q ss_pred hhchHHHHHHHHHHcCCchhhHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhh
Q 020593 167 KRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIR 241 (324)
Q Consensus 167 ~~~~~~~~l~~l~~~~~~~~g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~ 241 (324)
.. +.+..++..++...++|.+.+++.=+.|+| ++++.++|..++++++|++..++|.....++.+++.....
T Consensus 86 ~~--~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 86 PG--SEEALEKLQEKWYRRYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21 112223332222233588999999999999 9999999999999999999999999999988888766543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=93.88 E-value=1.4 Score=36.77 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhchHHHHHHHH--HHcCCchhhHHHHHHHhcccch---hhHHH
Q 020593 133 YGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQ--WLKRWPQQAAMLRL--AAEGSWLHQFRMVALFRVSPFP---YTIFN 205 (324)
Q Consensus 133 ~~~G~l~s~ig~~lGa~l~F~lgR~~r~~i~~--~l~~~~~~~~l~~l--~~~~~~~~g~~~v~l~Rl~P~P---~~lvn 205 (324)
++..++++.+|+++...+.+++-++..+++.+ ++++..+. ..++. .++.-.++|+.-+++.=.+|+| -+.-+
T Consensus 16 p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~-~~~k~~~~~~~i~kyg~~GL~lFVaIPlP~TG~wtga 94 (121)
T PF06695_consen 16 PWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEW-LEKKAEKKSKKIEKYGFWGLALFVAIPLPGTGAWTGA 94 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHH
Confidence 56778888888888777766666544333222 11111000 00011 1111112467777777777887 35667
Q ss_pred HHHHhcCCCchhHHHHHHHhhHHH
Q 020593 206 YAIVVTSMRFWPYLCGSVAGMVPE 229 (324)
Q Consensus 206 y~aG~t~i~~~~F~las~iG~lP~ 229 (324)
.++-+.+++.++=+++..+|.+-.
T Consensus 95 l~a~llg~~~~~~~~ai~~Gv~ia 118 (121)
T PF06695_consen 95 LIASLLGMDKKKAFLAIFLGVLIA 118 (121)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 777789999999999988887643
No 8
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=89.64 E-value=8.3 Score=39.16 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 122 PSMWLAGMIFGYGLGFVIIMVGTTIG 147 (324)
Q Consensus 122 ~l~i~aG~lFG~~~G~l~s~ig~~lG 147 (324)
+.+.++|++|||++|.+...++-.+|
T Consensus 100 Ipi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 100 ILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44688999999999999988888888
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.15 E-value=0.76 Score=38.55 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccccccCCCCcccccccCCCCCCC
Q 020593 252 HMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTK 315 (324)
Q Consensus 252 ~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (324)
.++...++..++|.++++++++++..|.-|+++|-...+.+- .+..+..|.-+..|+.|-|+
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p--~P~~~d~~~p~~~~~~~~~~ 121 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP--LPEEDDTDVPLSSVEIENPE 121 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------------------
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCCCcceeeecCCC
Confidence 345556777888888888888888777754443332222111 12222344445556666665
No 10
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=87.92 E-value=15 Score=32.18 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 119 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 151 (324)
Q Consensus 119 P~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~ 151 (324)
++...++++|++||+|+|.+...+++.++....
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 356668999999999999999888888877654
No 11
>PRK01844 hypothetical protein; Provisional
Probab=83.01 E-value=3.5 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 133 YGLGFVIIMVGTTIGMVLPYWVGLL 157 (324)
Q Consensus 133 ~~~G~l~s~ig~~lGa~l~F~lgR~ 157 (324)
.|..+++.+++..+|..++|+++|+
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999984
No 12
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=79.20 E-value=51 Score=32.67 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
..+++.+++.++...++...|+..
T Consensus 315 ~~iiailig~vvtavl~~~~k~~~ 338 (359)
T PRK10478 315 GYIAAVAVGAVVTAVCVNVLKSLA 338 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 455566666666767777776633
No 13
>PRK00523 hypothetical protein; Provisional
Probab=76.22 E-value=7.6 Score=29.54 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020593 136 GFVIIMVGTTIGMVLPYWVGLL 157 (324)
Q Consensus 136 G~l~s~ig~~lGa~l~F~lgR~ 157 (324)
.+++.+++..+|..++|+++|+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777889999999999984
No 14
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=73.54 E-value=11 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 119 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 151 (324)
Q Consensus 119 P~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~ 151 (324)
|++.....+|++||+..|.+...+|..+++.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 466778999999999999999999999998854
No 15
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=72.74 E-value=1.2e+02 Score=31.24 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=38.9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 020593 217 PYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYH------MTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGE 290 (324)
Q Consensus 217 ~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~------~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~ 290 (324)
+|+.++++|..-.-.+....|-..... .+.-- .++ ....++++++..+++.++..+.||...|-+++.
T Consensus 400 ~~i~a~~iG~avgGa~~~~~gv~~~a~----~gg~~~p~~~~~~~--~~~~~~~~~vG~~v~a~~~~~~k~~~~~~~~~~ 473 (482)
T PRK11404 400 PMITANTLAGGITGVLVIAFGIKRLAP----GLGIFDPLIGLMSP--VGSFYLVLAIGLALNISFIIVLKGLWLRRKAKA 473 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccc----ccCeeeecHHhhcc--HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHh
Confidence 777776777666666555555432211 11111 111 123456677777777777777777666554444
Q ss_pred hccc
Q 020593 291 ANGE 294 (324)
Q Consensus 291 ~~~~ 294 (324)
.+||
T Consensus 474 ~~~~ 477 (482)
T PRK11404 474 AQQE 477 (482)
T ss_pred hhhh
Confidence 4444
No 16
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=72.64 E-value=75 Score=33.81 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 258 IVYNIISFIIAVLTIIAFTVYAKRALKE 285 (324)
Q Consensus 258 ~~~~~ig~v~~vv~~~~l~~~~kr~l~~ 285 (324)
+...+++.++++++..++++..++.-++
T Consensus 313 ~~~~~i~~~v~~~v~~v~t~~~~~~~~~ 340 (639)
T PRK15083 313 YFANIASVAAAMAVSFVVSAILLKTSKV 340 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667777777777777777665544
No 17
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=72.61 E-value=99 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHHH
Q 020593 118 IPSGPSMWLAGMIFGY 133 (324)
Q Consensus 118 iP~~~l~i~aG~lFG~ 133 (324)
+|...+..++|+.+..
T Consensus 58 lp~pl~~~~~g~~L~~ 73 (340)
T PF12794_consen 58 LPLPLLLLAIGYLLQF 73 (340)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666777777777663
No 18
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.78 E-value=25 Score=29.03 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=10.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 020593 217 PYLCGSVAGMVPEAFIYIYSGRLIRTLA 244 (324)
Q Consensus 217 ~F~las~iG~lP~~~l~~~~G~~l~~l~ 244 (324)
.|+-++++|. .+|..+.++.
T Consensus 51 efIsGilVGa--------~iG~llD~~a 70 (116)
T COG5336 51 EFISGILVGA--------GIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHH--------HHHHHHHHhc
Confidence 4555555554 4555655543
No 19
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.33 E-value=9.6 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH
Q 020593 139 IIMVGTTIGMVLPYWVGLL-FRD 160 (324)
Q Consensus 139 ~s~ig~~lGa~l~F~lgR~-~r~ 160 (324)
+.+++..+|..++|+++|+ +.+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999984 443
No 20
>PRK01637 hypothetical protein; Reviewed
Probab=65.84 E-value=55 Score=30.91 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=28.6
Q ss_pred hhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhh
Q 020593 201 YTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRT 242 (324)
Q Consensus 201 ~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~ 242 (324)
+.++.+..--.++++++-+.|++++.+-|.+.-...+.-+.+
T Consensus 187 f~~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~ 228 (286)
T PRK01637 187 FWLLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITT 228 (286)
T ss_pred HHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555578899999999998888777765555555544
No 21
>PRK13661 hypothetical protein; Provisional
Probab=64.40 E-value=27 Score=31.28 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 119 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 150 (324)
Q Consensus 119 P~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l 150 (324)
|++.+..+.|++||+..|++...+|..+++.+
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll 70 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFI 70 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999998887
No 22
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.59 E-value=19 Score=27.23 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 020593 133 YGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWP 170 (324)
Q Consensus 133 ~~~G~l~s~ig~~lGa~l~F~lgR~~r~~i~~~l~~~~ 170 (324)
.|.++++..++..+|...+||++|+. ..++++++|
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~---~~k~lk~NP 37 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQ---MKKQLKDNP 37 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCC
Confidence 35566677777778888889999753 233444444
No 23
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=58.87 E-value=10 Score=34.80 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhhhhhccCCcc---c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhchhccccccCC
Q 020593 230 AFIYIYSGRLIRTLADVKYGNYH---M--TTVEIVYNIISFIIAVLTIIAFTVYAKRAL-----KELERGEANGEETSTS 299 (324)
Q Consensus 230 ~~l~~~~G~~l~~l~~~~~~~~~---~--s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l-----~~~~~~~~~~~~~~~~ 299 (324)
++++..+++.+.+-.+.+-+.+. . .-..+++.+++.+++|+++++++.+.|+.. +-.++..+..+|-=+.
T Consensus 6 tli~~lv~rs~~tPl~~~Ia~d~~~~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKqe~~e~~tP 85 (221)
T PF08374_consen 6 TLIEELVRRSLETPLDRNIAGDPASSRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQENSEWVTP 85 (221)
T ss_pred HHHHHHHHhhccCCCcCcccCCCCccccccceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhcccccccccCC
Confidence 56777778877654332211111 1 113455666666777777777777776332 1122222212344444
Q ss_pred CCccccccc
Q 020593 300 TGSGFEMNK 308 (324)
Q Consensus 300 ~~~~~~~~~ 308 (324)
.+.+-|.|+
T Consensus 86 n~~nkq~k~ 94 (221)
T PF08374_consen 86 NQENKQKKK 94 (221)
T ss_pred Cccchhhcc
Confidence 666666654
No 24
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=58.15 E-value=43 Score=30.35 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=33.5
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
++|.|++++...++.|.++++..+..=. +-|-.++|. .+.++| .+..++-+|.||+.
T Consensus 160 ~~~K~~lv~~~sm~lWi~v~i~t~~lPt------slN~~L~pi--~l~IiG-----av~lalRfylkkk~ 216 (226)
T COG4858 160 GTWKYLLVAVLSMLLWIAVMIATVFLPT------SLNPQLPPI--ALTIIG-----AVILALRFYLKKKK 216 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCC------cCCcCCchH--HHHHHH-----HHHHHHHHHHHHhh
Confidence 3467777778888999988855443322 334445553 222222 33456678887754
No 25
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=57.84 E-value=1.5e+02 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhccchhhhhhhHHHHHHHH
Q 020593 55 RWIRTLALCILLVIII-LIFLKWGVPFLFEKVLFPLMQWEA 94 (324)
Q Consensus 55 ~W~k~l~l~~l~~l~~-~~~~~~~~~~~~~~~l~~l~~w~~ 94 (324)
+|.+.++.++++++++ +.++. .+ .+...+.+..|+-
T Consensus 240 k~~~~~i~~~i~~~~~~~~~~~--~~--~~~~~~~~~~W~l 276 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISFYL--NG--FEFLYKNLKLWIL 276 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--Cc--HHHHHHHHHHHHH
Confidence 4555556665555555 33222 22 2334566777875
No 26
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=56.81 E-value=41 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.493 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 125 WLAGMIFGYGL-GFVIIMVGTTIGMVLPYWVGLLFRDRI 162 (324)
Q Consensus 125 i~aG~lFG~~~-G~l~s~ig~~lGa~l~F~lgR~~r~~i 162 (324)
+++.++++... .=.++.+++.+|..++|++.|.+.+++
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl 128 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKL 128 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555432 336788999999999999998774433
No 27
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=56.15 E-value=1.3e+02 Score=25.57 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=55.5
Q ss_pred HHHhcccc-hhhH-HHHHHH-hcCCCchhHHHHHHHhhHHHHHHH-----HHHHHhhhhhhh-----hcc-CCcc--c--
Q 020593 192 ALFRVSPF-PYTI-FNYAIV-VTSMRFWPYLCGSVAGMVPEAFIY-----IYSGRLIRTLAD-----VKY-GNYH--M-- 253 (324)
Q Consensus 192 ~l~Rl~P~-P~~l-vny~aG-~t~i~~~~F~las~iG~lP~~~l~-----~~~G~~l~~l~~-----~~~-~~~~--~-- 253 (324)
++.=++|+ +.+. +..+.+ +.+.+..--++++.++ -|.++.. ..+|+.+-.... ..+ ..+. .
T Consensus 30 ~fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~-nPlt~~~i~~~~y~vG~~ll~~~~~~~~~~~~~~~~~~~~~~ 108 (154)
T PF09835_consen 30 VFIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWIS-NPLTIPPIYPLSYRVGSFLLGGPPEEFAALFEFDWSLMHWSD 108 (154)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCChhhhhhhcccccccchHHH
Confidence 33348884 5443 333333 5788888888888884 4665532 235665544332 101 1111 0
Q ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 020593 254 -----TTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEAN 292 (324)
Q Consensus 254 -----s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~ 292 (324)
......+.+-+++.+++..+..++..+..+++.++++++
T Consensus 109 ~~~~~~~~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~ 152 (154)
T PF09835_consen 109 LLESLWEFGLPFLLGSLILGIVLGIISYFLVYFLVRKYRKRRRK 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011233444467777888778888888888777766544
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.63 E-value=9.4 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 258 IVYNIISFIIAVLTIIAFTVYAKRALKE 285 (324)
Q Consensus 258 ~~~~~ig~v~~vv~~~~l~~~~kr~l~~ 285 (324)
|+++++-+++.+++++++.+..||..++
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444445555555555666665554
No 29
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=55.46 E-value=34 Score=28.57 Aligned_cols=38 Identities=29% Similarity=0.563 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 125 WLAGMIFGYGLG--FVIIMVGTTIGMVLPYWVGLLFRDRI 162 (324)
Q Consensus 125 i~aG~lFG~~~G--~l~s~ig~~lGa~l~F~lgR~~r~~i 162 (324)
+++|++.|...+ -..+.+++.+|..++|++.|++++..
T Consensus 82 li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 82 LIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555554444 57788888999999999999885443
No 30
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.31 E-value=28 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFTVYAK 280 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~k 280 (324)
++++++++++++++.--+-++
T Consensus 6 ~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 444555555555544444443
No 31
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=53.88 E-value=1.3e+02 Score=25.52 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRALKELERGEANG 293 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~~ 293 (324)
..+.++++..+..+.-.++.||..+++.++-..+
T Consensus 76 ~~l~~~vi~~v~~Iisa~f~kks~~~l~~~tg~~ 109 (139)
T PF06195_consen 76 SFLAGLVILWVLFIISAYFLKKSYDLLAEYTGVD 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3445667777777777889999999887765544
No 32
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=53.86 E-value=52 Score=30.46 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=15.1
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHh
Q 020593 215 FWPYLCGSVAGMVPEAFIYIYSGRL 239 (324)
Q Consensus 215 ~~~F~las~iG~lP~~~l~~~~G~~ 239 (324)
+++|+.-.++|.+-+.++-...|..
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~ 32 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRI 32 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766666554444333
No 33
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=53.62 E-value=1.5e+02 Score=28.94 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhh
Q 020593 229 EAFIYIYSGRLIR 241 (324)
Q Consensus 229 ~~~l~~~~G~~l~ 241 (324)
.+++.+|+|..+.
T Consensus 118 ~t~il~y~G~~~~ 130 (356)
T COG4956 118 LTIILAYFGFQLA 130 (356)
T ss_pred HHHHHHHHhhHHh
Confidence 4556667776654
No 34
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=53.12 E-value=15 Score=36.63 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhchhccc---cccCCCCcccccccCCCCCCC
Q 020593 274 AFTVYAKRALKELERGEANGE---ETSTSTGSGFEMNKLPLERTK 315 (324)
Q Consensus 274 ~l~~~~kr~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 315 (324)
.-+++.||+.||+...+.++| .++.+.++.+| ++|||
T Consensus 192 lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~~-----~~rpk 231 (433)
T COG2851 192 LAWLLGKKERKRLGVIDLSEELEQLVELSEEDQEE-----LKRPK 231 (433)
T ss_pred HHHHhhHHHHHHhhhccCchhhhhccccCCchhhh-----hhccH
Confidence 335556777777776655543 44444444433 67776
No 35
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=53.11 E-value=2.1e+02 Score=27.31 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=50.9
Q ss_pred hHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhcc-CCcccchH--HHHHHHH
Q 020593 187 QFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKY-GNYHMTTV--EIVYNII 263 (324)
Q Consensus 187 g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~-~~~~~s~~--~~~~~~i 263 (324)
+++.+++.|++|.+-...||+...+-.+.+ .. -..|..+.+.......++-..... .-..++|. .|+.+++
T Consensus 128 ~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~---v~---~l~p~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~ 201 (275)
T KOG3140|consen 128 VFKGVLLVCLLSTLGASLCYLLSKLFGRPL---VL---KLFPDKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIV 201 (275)
T ss_pred cceEEeeeeeccchhHHHHHHHHHHHhHHH---HH---HHhHHHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHH
Confidence 578899999999766888988876544422 11 134666666665555433211110 00123443 4777877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020593 264 SFIIAVLTIIAFTVYAK 280 (324)
Q Consensus 264 g~v~~vv~~~~l~~~~k 280 (324)
+-++.|-..+.+.-..+
T Consensus 202 spvl~Vp~~~f~~~~~~ 218 (275)
T KOG3140|consen 202 SPVLGVPLRIFFIGTFK 218 (275)
T ss_pred HHhhccchHHHHHHHHH
Confidence 77766666655554444
No 36
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=53.02 E-value=1.9e+02 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.9
Q ss_pred cCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 117 LIPSGPS-MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL 156 (324)
Q Consensus 117 ~iP~~~l-~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR 156 (324)
..+-+.. -.+-|-..|.+....-+++|+++.-.++=..+|
T Consensus 68 ~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 68 GSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455554 355677777777777777777777777777777
No 37
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=51.73 E-value=2.8e+02 Score=28.32 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRALKELERGEANG 293 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~~ 293 (324)
+..+++..+++..++..++.+|.-||++++.+.+
T Consensus 173 il~VgIP~~~ig~l~~~l~~~~~gk~l~~Dp~~q 206 (443)
T PRK12489 173 ILAVTIPATLIGVLAAALWSLRRGKDLDKDPEFQ 206 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHH
Confidence 3456777778888888888888778887765544
No 38
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=50.94 E-value=3e+02 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020593 259 VYNIISFIIAVLTIIAFTVYA 279 (324)
Q Consensus 259 ~~~~ig~v~~vv~~~~l~~~~ 279 (324)
...+++.++++++...+++..
T Consensus 434 ~~~ii~~~ia~v~afvlt~~~ 454 (472)
T PRK09796 434 VWVFAVMALAVVLSFILTLLL 454 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777776777666
No 39
>PRK11677 hypothetical protein; Provisional
Probab=50.34 E-value=35 Score=29.11 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020593 137 FVIIMVGTTIGMVLPYWVGLLF 158 (324)
Q Consensus 137 ~l~s~ig~~lGa~l~F~lgR~~ 158 (324)
++++++|.++|.+++|+++|+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3677788899999999999976
No 40
>PF14143 YrhC: YrhC-like protein
Probab=50.21 E-value=1.1e+02 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhh
Q 020593 230 AFIYIYSGRLIR 241 (324)
Q Consensus 230 ~~l~~~~G~~l~ 241 (324)
...+.|+|..+.
T Consensus 20 vs~FlYiG~viP 31 (72)
T PF14143_consen 20 VSTFLYIGTVIP 31 (72)
T ss_pred HHHHHHHHhhCC
Confidence 346778888875
No 41
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=47.79 E-value=16 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 119 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 150 (324)
Q Consensus 119 P~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l 150 (324)
|..+..+.+|+++|+++|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999988777766665544
No 42
>PRK09609 hypothetical protein; Provisional
Probab=47.12 E-value=43 Score=32.50 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhh
Q 020593 219 LCGSVAGMVPEAFIYIYSGRLIR 241 (324)
Q Consensus 219 ~las~iG~lP~~~l~~~~G~~l~ 241 (324)
+.++.+..+-..+++...|....
T Consensus 172 i~a~ii~~~i~l~i~~~~~~~~~ 194 (312)
T PRK09609 172 IAALIILVIIILFIYFVVGFLDP 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCh
Confidence 33444444444555555555543
No 43
>COG1263 PtsG Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]
Probab=46.00 E-value=3.2e+02 Score=27.35 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 258 IVYNIISFIIAVLTIIAFTVYAKR 281 (324)
Q Consensus 258 ~~~~~ig~v~~vv~~~~l~~~~kr 281 (324)
+....+|.+.+++....+++..++
T Consensus 351 ~~~~~ig~~~a~i~~fvf~~li~~ 374 (393)
T COG1263 351 LLVYVIGLVIAAVYYFVFTFLIGK 374 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777766666666654
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.28 E-value=45 Score=24.09 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 020593 264 SFIIAVLTIIAFTVYAKRALKELERGEANG 293 (324)
Q Consensus 264 g~v~~vv~~~~l~~~~kr~l~~~~~~~~~~ 293 (324)
|++++.+....-.+-.|+..++.+++-++.
T Consensus 31 G~llg~l~~~~~~~~~r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 31 GALLGWLLSLPSRLRLRRRIRRLRKELKKL 60 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333344456666665543333
No 45
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=45.23 E-value=2.8e+02 Score=26.41 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHcCCchhhHHHHHHHhcccc-hhhHHHHHHHhcCCCchh
Q 020593 139 IIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWP 217 (324)
Q Consensus 139 ~s~ig~~lGa~l~F~lgR~~r~~i~~~l~~~~~~~~l~~l~~~~~~~~g~~~v~l~Rl~P~-P~~lvny~aG~t~i~~~~ 217 (324)
+..+|..+++.+-.++. +++++|+++++. . ..-....++.-++|+ ++..+..+.++.+-+-..
T Consensus 20 ~ll~g~~l~~~i~~~v~---~~~~~~~l~~~~-~------------~~~~~a~~~G~~~p~C~c~~~P~~~~l~~~Ga~~ 83 (307)
T PF03773_consen 20 FLLLGFLLSGLIQVFVP---REKVARWLGRSG-F------------KGILLASLLGALLPVCSCGAVPVARGLLRKGAPL 83 (307)
T ss_pred HHHHHHHHHHHHHHHCC---HHHHHHHcCCCc-c------------hHHHHHHHHHhccCCCcccHHHHHHHHHHCCCCc
Confidence 34445555554443333 455666665522 1 112566788889996 899999999987655544
Q ss_pred HHHHHHHhhHHH----HHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 218 YLCGSVAGMVPE----AFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRA 282 (324)
Q Consensus 218 F~las~iG~lP~----~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~ 282 (324)
-..-+++-..|. .+++.+ ..++ -.......+.++++++++...+.++.++.
T Consensus 84 ~~~~aFl~a~p~~n~~~~~~~~--~~lg------------~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 84 GAAMAFLLASPLLNPIVLLLTW--AALG------------WKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred chhHHHHHhhHHhhHHHHHHHH--HHhC------------cHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 444444333333 222221 1111 01223345566677776666666666555
No 46
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=43.71 E-value=74 Score=21.69 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=6.6
Q ss_pred HHHHHHHHhchhcc
Q 020593 280 KRALKELERGEANG 293 (324)
Q Consensus 280 kr~l~~~~~~~~~~ 293 (324)
|+..+++++.++.+
T Consensus 30 r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 30 RRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHhH
Confidence 44445555544443
No 47
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=43.06 E-value=92 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=20.9
Q ss_pred cccCChHHH--HHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 020593 115 VFLIPSGPS--MWLAGMIFGY--GLGFVIIMVGTTIGMV 149 (324)
Q Consensus 115 ~~~iP~~~l--~i~aG~lFG~--~~G~l~s~ig~~lGa~ 149 (324)
.+|+|++-. ..+++.++|. ...++...+|..++++
T Consensus 82 aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 82 AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 346786643 4556677763 4456666666666554
No 48
>PRK11677 hypothetical protein; Provisional
Probab=41.13 E-value=23 Score=30.23 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 258 IVYNIISFIIAVLTIIAFTVYAKRA 282 (324)
Q Consensus 258 ~~~~~ig~v~~vv~~~~l~~~~kr~ 282 (324)
|++.++++++++++..++.++..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 6677788888888888888776544
No 49
>PRK01844 hypothetical protein; Provisional
Probab=37.83 E-value=95 Score=23.68 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020593 261 NIISFIIAVLTIIAFTVYAKRALKELER 288 (324)
Q Consensus 261 ~~ig~v~~vv~~~~l~~~~kr~l~~~~~ 288 (324)
.++.++..++..++-.+++||..++..+
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666777777655433
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=37.18 E-value=2.8e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020593 134 GLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLK 167 (324)
Q Consensus 134 ~~G~l~s~ig~~lGa~l~F~lgR~~r~~i~~~l~ 167 (324)
+.|..+..+|..+.. +.+++.|++.+...++++
T Consensus 141 ~~~i~~~glGlll~~-~~~~l~k~~~~~~~~y~k 173 (181)
T PF08006_consen 141 FFGIGLFGLGLLLIV-ITFYLTKLFIKLTVRYLK 173 (181)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555555544433 456677776555555543
No 51
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=37.04 E-value=83 Score=27.20 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020593 137 FVIIMVGTTIGMVLPYWVGLLFR 159 (324)
Q Consensus 137 ~l~s~ig~~lGa~l~F~lgR~~r 159 (324)
=..+++++.+|..++|++.|++.
T Consensus 103 e~~~~~~~~~g~~~g~~~~r~~~ 125 (154)
T PRK10862 103 DLAALCGALLGGVGGFLLARGLS 125 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888663
No 52
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.90 E-value=48 Score=28.16 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 256 VEIVYNIISFIIAVLTIIAFTVYAKRALKE 285 (324)
Q Consensus 256 ~~~~~~~ig~v~~vv~~~~l~~~~kr~l~~ 285 (324)
..|.+.++|+|+++++..++.++.++.++.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 457788899999999999999998877765
No 53
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=36.86 E-value=1.5e+02 Score=22.04 Aligned_cols=18 Identities=11% Similarity=0.288 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFTV 277 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~ 277 (324)
+..+++++.+++++.+.+
T Consensus 9 i~Gm~iVF~~L~lL~~~i 26 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVI 26 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 54
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=36.66 E-value=4.6e+02 Score=26.97 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=13.2
Q ss_pred Hhccc-chhhHHHHHHHhcCCC
Q 020593 194 FRVSP-FPYTIFNYAIVVTSMR 214 (324)
Q Consensus 194 ~Rl~P-~P~~lvny~aG~t~i~ 214 (324)
.|++| +-.++-|+.++.++++
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 46666 5667777776665543
No 55
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=36.44 E-value=59 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020593 127 AGMIFGYGLGFVIIMVGTTIGMV 149 (324)
Q Consensus 127 aG~lFG~~~G~l~s~ig~~lGa~ 149 (324)
.|.+||.+.|++++++-..+++.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888877777654
No 56
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=36.38 E-value=2.4e+02 Score=26.97 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 020593 49 RTKSLIRWIRTLALCILLVI 68 (324)
Q Consensus 49 ~~~~~~~W~k~l~l~~l~~l 68 (324)
+.+...+|..+++..++++.
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~ 45 (283)
T COG3639 26 RDRSKFRLLILLVIIALLVW 45 (283)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 33334556555544444433
No 57
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=35.34 E-value=57 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.2
Q ss_pred hcccc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 020593 113 FPVFL-IPSGPSMWLAGMIFGYGLGFVIIMV 142 (324)
Q Consensus 113 ~~~~~-iP~~~l~i~aG~lFG~~~G~l~s~i 142 (324)
.|.-| =|...+.++.|.++|...|+.++++
T Consensus 49 ~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 49 VPDKPVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333 3778888999999999888877654
No 58
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=35.17 E-value=1.9e+02 Score=21.58 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020593 137 FVIIMVGTTIGMVLPYWVGLLFRDRIHQWL 166 (324)
Q Consensus 137 ~l~s~ig~~lGa~l~F~lgR~~r~~i~~~l 166 (324)
+...++|..++..++|++-|..|+.....+
T Consensus 33 ~~~~l~A~vis~~lS~~ll~~~R~~~~~~i 62 (69)
T PF14012_consen 33 LVAALLALVISMPLSYVLLRRLRDRASADI 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888899999988887765543
No 59
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=35.07 E-value=2.5e+02 Score=24.94 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTT--VEIVYNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~--~~~~~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
+......++++|.+-..+..+..|...-.-..+ + ..++ .+.++|....+...++...+....-+..
T Consensus 105 ~~~~i~~g~~i~~~~r~~~h~isGvif~~~yAp--~--g~~~~~YS~~yN~sy~l~~~~i~~iv~~ll~~~~ 172 (177)
T PF09515_consen 105 SYLNIILGTFIAVFLRYFCHFISGVIFFGSYAP--E--GMNPWLYSFIYNGSYMLPELLITLIVLSLLYKRL 172 (177)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG----T--T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--C--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345667788888888888877777655321111 1 1234 3556666555544444444433333333
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.40 E-value=74 Score=26.69 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 127 AGMIFGYGLGFVIIMVGTTIGMVLPYWVGLL 157 (324)
Q Consensus 127 aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR~ 157 (324)
+|++||...|++..+ ..+.|++.|.
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 555566555553322 2556666554
No 61
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=33.59 E-value=1.8e+02 Score=25.53 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHH
Q 020593 204 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSG 237 (324)
Q Consensus 204 vny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G 237 (324)
.|.+-|++.+ +-|++.|.+=-+|.++...+-|
T Consensus 77 gNL~e~~~al--~gfl~~t~~iqlPl~vFL~~n~ 108 (174)
T KOG4694|consen 77 GNLCEGATAL--WGFLTVTPCIQLPLMVFLRLNA 108 (174)
T ss_pred hhHhhchHHH--HHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555543 6677777766777666555433
No 62
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.15 E-value=65 Score=26.95 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020593 139 IIMVGTTIGMVLPYWVGLLF 158 (324)
Q Consensus 139 ~s~ig~~lGa~l~F~lgR~~ 158 (324)
|+++|.++|.+++|+++|..
T Consensus 1 y~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 46788888999999999976
No 63
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.09 E-value=1.5e+02 Score=26.62 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=29.8
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
+++.+++.+++.++.|.++++...- +... -|-.++++ ++.++| ++ ..++.+|.||+.
T Consensus 145 ~~~k~~~~~~~~~~~w~~~~~~~~~-lp~~-----inp~l~~~--~~iiig----~i-~~~~~~~lkkk~ 201 (206)
T PF06570_consen 145 SWWKYILISVLAMVLWIVIFVLTSF-LPPV-----INPVLPPW--VYIIIG----VI-AFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cccc-----CCcCCCHH--HHHHHH----HH-HHHHHHHHHHHh
Confidence 4456666666677777777666555 3221 22334543 333333 33 335567777654
No 64
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=32.97 E-value=1.5e+02 Score=28.39 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=42.5
Q ss_pred ccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 020593 197 SPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFT 276 (324)
Q Consensus 197 ~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~ 276 (324)
.|.+--.+.+++|.. ..++++.+-...+.+..| .+.... .++.+|.+..+|.+..+++...+.
T Consensus 113 tPllll~l~lla~~~--------~~ti~~~v~ad~~~iv~~-laaa~~--------~~tykW~~y~ig~~a~lvvl~~l~ 175 (285)
T COG5524 113 TPLLLLYLGLLAGTS--------LWTIAGVVAADIIMIVTG-LAAALT--------HSTYKWAYYAIGAAAFLVVLAVLV 175 (285)
T ss_pred hhHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHHH-HHHHhh--------chhhhHHHHHHHHHHHHHHHHHHH
Confidence 465666677777766 445555555555555555 111111 246789999999888777777666
Q ss_pred HHHHHHH
Q 020593 277 VYAKRAL 283 (324)
Q Consensus 277 ~~~kr~l 283 (324)
.-.++..
T Consensus 176 ~~~~~~a 182 (285)
T COG5524 176 TGFFAKA 182 (285)
T ss_pred hhhhhhh
Confidence 5555443
No 65
>PRK00523 hypothetical protein; Provisional
Probab=30.83 E-value=1.6e+02 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRALKELER 288 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l~~~~~ 288 (324)
..++++++.++..++-.+++||..++..+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666667777777665443
No 66
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=30.79 E-value=3.6e+02 Score=23.43 Aligned_cols=54 Identities=6% Similarity=0.177 Sum_probs=34.9
Q ss_pred hHHHHHHHhccc-ch--hhHHHHHHHhcCCCchhHHHHHHHhhHHHHHH----HHHHHHhhh
Q 020593 187 QFRMVALFRVSP-FP--YTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFI----YIYSGRLIR 241 (324)
Q Consensus 187 g~~~v~l~Rl~P-~P--~~lvny~aG~t~i~~~~F~las~iG~lP~~~l----~~~~G~~l~ 241 (324)
|+..=++.=++| ++ ..+.-+++-+.|.+...++++|+++. |.+.+ ...+|+.+-
T Consensus 22 g~a~Gvf~g~~P~~glh~~~~~~la~~lr~N~~~a~l~t~v~n-plty~l~~~s~~~G~~lL 82 (154)
T TIGR03546 22 AVALGMILGLTPFLNLHNIALLFLVLILRVNLGAFILSAILFS-GLAYLLDPISDQVGEWLL 82 (154)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcC-cchhhhHHHHHHHHHHHh
Confidence 455556666778 43 33445556688999999999999987 43332 234466554
No 67
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=29.92 E-value=4.2e+02 Score=23.93 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=54.3
Q ss_pred HHHHHHhcccchhh-HHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHH
Q 020593 189 RMVALFRVSPFPYT-IFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFII 267 (324)
Q Consensus 189 ~~v~l~Rl~P~P~~-lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~ 267 (324)
..+.+..++|-|-. =+....|...-++.--+++.+...+|..++...+-....++.|.. -.+.++..+-.++
T Consensus 50 ~~laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~-------~v~~~~~glk~~i 122 (195)
T COG2059 50 DALAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLP-------LVKGILKGLKPAI 122 (195)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-------HHHHHHHHHHHHH
Confidence 56899999998863 233334555556677777888888999998888887777664421 1222233333344
Q ss_pred HHHHHHHHHHHHHHHH
Q 020593 268 AVLTIIAFTVYAKRAL 283 (324)
Q Consensus 268 ~vv~~~~l~~~~kr~l 283 (324)
..++....+.+.|+..
T Consensus 123 i~lv~~~~~~l~~~~~ 138 (195)
T COG2059 123 IALVLQAVWRLGKKAL 138 (195)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444445555566554
No 68
>PF15102 TMEM154: TMEM154 protein family
Probab=29.85 E-value=13 Score=32.12 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=9.5
Q ss_pred cccCCCCcccccccCCCCC
Q 020593 295 ETSTSTGSGFEMNKLPLER 313 (324)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ 313 (324)
+..-.++-|-|-.|+|.=.
T Consensus 98 ~~~qt~e~~~Env~~PiFE 116 (146)
T PF15102_consen 98 SALQTYELGSENVKVPIFE 116 (146)
T ss_pred ccccccccCcccccccccc
Confidence 3333455555555666433
No 69
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=29.57 E-value=1.4e+02 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=7.0
Q ss_pred HHHHHHHHHhchhccc
Q 020593 279 AKRALKELERGEANGE 294 (324)
Q Consensus 279 ~kr~l~~~~~~~~~~~ 294 (324)
+|+..++.++++...|
T Consensus 38 FK~~~~~~~~d~~~~e 53 (84)
T PRK00191 38 FKSEVKEMSKDDQTPE 53 (84)
T ss_pred HHHHHhcccccccchh
Confidence 3444444444444333
No 70
>COG4732 Predicted membrane protein [Function unknown]
Probab=29.21 E-value=86 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=20.2
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 118 IPSG-PSMWLAGMIFGYGLGFVIIMVGTT 145 (324)
Q Consensus 118 iP~~-~l~i~aG~lFG~~~G~l~s~ig~~ 145 (324)
.|.. .+.+++|.+.|+||+...+.+-+.
T Consensus 37 aP~qh~VNvlAgV~~GPwyala~A~~~sl 65 (177)
T COG4732 37 APMQHFVNVLAGVMMGPWYALAMALVTSL 65 (177)
T ss_pred CcHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4654 357999999999998766554443
No 71
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=29.18 E-value=2.9e+02 Score=21.80 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHH-HHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 220 CGSVAGMVPEAFI-YIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRA 282 (324)
Q Consensus 220 las~iG~lP~~~l-~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~ 282 (324)
...++|.+-..+. +....+.+++..|+.+++..... +..-.++.++++++..|...++
T Consensus 26 ~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~-----fg~~~vVGvvLlv~viwLl~~A 84 (87)
T PF11190_consen 26 GVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGD-----FGATVVVGVVLLVFVIWLLTKA 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHH-----hhhHHHHHHHHHHHHHHHHHHH
Confidence 4455666655554 44456677888888776653222 2223445555565666666554
No 72
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=28.52 E-value=2e+02 Score=25.54 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 216 WPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALK 284 (324)
Q Consensus 216 ~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l~ 284 (324)
.=|.-|.++..+| +|.|-|-.--++.+ .+++.+++.+++.-++..-+--.|+.++
T Consensus 20 lfY~nA~ivS~vP---i~LF~~Ih~m~~~~-----------~~I~f~i~t~~sayll~fAYkNvk~~lK 74 (170)
T PF07074_consen 20 LFYGNALIVSAVP---IWLFWRIHQMDLYD-----------SLIVFVIVTLVSAYLLAFAYKNVKFVLK 74 (170)
T ss_pred ehhhHHHHHHHHH---HHHHHHHHhcccch-----------hhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455566666677 44444433322211 2344444544444444444444454444
No 73
>PRK10983 putative inner membrane protein; Provisional
Probab=28.39 E-value=5.8e+02 Score=25.09 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=11.3
Q ss_pred HHHhcCCCchhHHHHHHHhhHHHHH
Q 020593 207 AIVVTSMRFWPYLCGSVAGMVPEAF 231 (324)
Q Consensus 207 ~aG~t~i~~~~F~las~iG~lP~~~ 231 (324)
+++++.++ | +++.++.+|..+
T Consensus 247 l~~~~~i~---~-~G~~~~~ip~~~ 267 (368)
T PRK10983 247 LMILSCLV---Q-LGPLPVLIPAII 267 (368)
T ss_pred HHHHHHHH---H-hhhHHHHHHHHH
Confidence 34555543 2 466666677653
No 74
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.28 E-value=1.6e+02 Score=27.89 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=31.0
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKR 281 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr 281 (324)
..+.+.+.|.+ .+|.+++..+.|-....+.+.. .+.. |.+ .+++.+++.+++.+|.||
T Consensus 257 ~mk~LTvvt~I-flP~t~IaGiyGMNf~~mP~l~------~~~g--y~~-~l~~m~~i~~~~~~~fkr 314 (318)
T TIGR00383 257 IMKILTVVSTI-FIPLTFIAGIYGMNFKFMPELN------WKYG--YPA-VLIVMAVIALGPLIYFRR 314 (318)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCcccCcccc------chhH--HHH-HHHHHHHHHHHHHHHHHH
Confidence 34555555655 4577888777787766543321 1222 221 233444445556777765
No 75
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=28.26 E-value=1e+02 Score=24.08 Aligned_cols=7 Identities=43% Similarity=0.392 Sum_probs=3.5
Q ss_pred CCCcccc
Q 020593 299 STGSGFE 305 (324)
Q Consensus 299 ~~~~~~~ 305 (324)
|+++.+|
T Consensus 57 S~Gd~Ee 63 (81)
T PF00558_consen 57 SDGDEEE 63 (81)
T ss_dssp TTTCCHH
T ss_pred CCCcHHH
Confidence 4455555
No 76
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=28.17 E-value=3.7e+02 Score=22.79 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=34.1
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 020593 88 PLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGY--GLGFVIIMVGTTIGMVLPYWVGL 156 (324)
Q Consensus 88 ~l~~w~~~~~G~p~~~l~~i~~~~~~~~~~iP~~~l~i~aG~lFG~--~~G~l~s~ig~~lGa~l~F~lgR 156 (324)
.+.+|+....|+|+.+++.+++.++ .++.|-+||+ .|-+++....+.++-...|++-+
T Consensus 3 r~s~~is~~~gs~~~f~~~~~~Ii~-----------W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn 62 (132)
T PF04120_consen 3 RFSNWISDVAGSPWAFVIAVAVIIV-----------WAISGPVFGFSDTWQLVINTATTIITFLMVFLIQN 62 (132)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHhccccCcchHHHHHccHHHHHHHHHHHHHHh
Confidence 4567776666778765544433222 2345556664 34556666667776666777654
No 77
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=28.05 E-value=3e+02 Score=21.60 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=22.7
Q ss_pred cCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 117 LIPSGPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVG 155 (324)
Q Consensus 117 ~iP~~~l~i~aG~l-FG~~~G~l~s~ig~~lGa~l~F~lg 155 (324)
.+|.+++..++|.. ..++.=++.+.+|...-..+..++|
T Consensus 82 ~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 82 GLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999998888874 2233334445555555555444443
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=27.73 E-value=6.7e+02 Score=25.55 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhchhccccccCC
Q 020593 262 IISFIIAVLTIIAFTVYAKR----ALKELERGEANGEETSTS 299 (324)
Q Consensus 262 ~ig~v~~vv~~~~l~~~~kr----~l~~~~~~~~~~~~~~~~ 299 (324)
+.++++++++.+...+..|+ .+++.++++...++++.|
T Consensus 456 ~~~~~~~~~~~v~~sl~t~~~~~~~~~~f~~~~~~~~~~~~~ 497 (502)
T PRK15419 456 IPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPS 497 (502)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhhhh
Confidence 34566666666666666554 234444443333444333
No 79
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=27.71 E-value=2e+02 Score=19.50 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=3.3
Q ss_pred HHHHHhch
Q 020593 283 LKELERGE 290 (324)
Q Consensus 283 l~~~~~~~ 290 (324)
.+++++.+
T Consensus 34 ~~~l~~~~ 41 (45)
T TIGR03141 34 LRELRRLE 41 (45)
T ss_pred HHHHHHHH
Confidence 34444433
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=27.68 E-value=6.5e+02 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=12.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhh
Q 020593 218 YLCGSVAGMVPEAFIYIYSGRLIR 241 (324)
Q Consensus 218 F~las~iG~lP~~~l~~~~G~~l~ 241 (324)
+..+.+++. -.+++|+..|-.-.
T Consensus 156 ~~~~iii~~-~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 156 YKTGLLIGA-LIIVIYTFFGGFLA 178 (487)
T ss_pred HHHHHHHHH-HHHHHHHHhhhHHH
Confidence 444444432 34667877776544
No 81
>COG4852 Predicted membrane protein [Function unknown]
Probab=26.90 E-value=3.8e+02 Score=22.46 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhccc--cCChH----H-HHHHHHHHHHH
Q 020593 101 VLAIVLIASLALFPVF--LIPSG----P-SMWLAGMIFGY 133 (324)
Q Consensus 101 ~~~l~~i~~~~~~~~~--~iP~~----~-l~i~aG~lFG~ 133 (324)
.-+++|-++|++-..+ ..|+. . -.++.|.++|+
T Consensus 44 ~PAiiFYlIYv~gltff~l~P~~~kgs~t~alL~GAl~G~ 83 (134)
T COG4852 44 APAIIFYLIYVVGLTFFVLSPGLEKGSWTYALLNGALYGL 83 (134)
T ss_pred chHHHHHHHHHhhhheeEeccccccCccHHHHHhhhHhhh
Confidence 3334454555543222 23553 2 35788999884
No 82
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=26.76 E-value=1.1e+02 Score=26.69 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 020593 124 MWLAGMIFGYGLGF 137 (324)
Q Consensus 124 ~i~aG~lFG~~~G~ 137 (324)
.+.+|.+.|+|++.
T Consensus 35 NviaaVlLGP~ya~ 48 (150)
T PF09512_consen 35 NVIAAVLLGPWYAV 48 (150)
T ss_pred HHHHHHHhchHHHH
Confidence 45555555555544
No 83
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=26.62 E-value=2.1e+02 Score=25.47 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020593 151 PYWVGLLFRDRIHQWLK 167 (324)
Q Consensus 151 ~F~lgR~~r~~i~~~l~ 167 (324)
+++++|..+..+...+.
T Consensus 119 ~~~l~r~vkk~v~~kFp 135 (170)
T PF11241_consen 119 GVILGRRVKKRVAEKFP 135 (170)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 57888888666655443
No 84
>COG4280 Predicted membrane protein [Function unknown]
Probab=26.62 E-value=2.1e+02 Score=26.37 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=43.2
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEAN 292 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~ 292 (324)
+++.=++++.+|...-..+...+|..+.- -|. +++-++.+++++..-....|+..++....++.
T Consensus 32 ~wr~al~ga~lglalvl~l~lvlGk~L~l-----------vPl----n~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg 95 (236)
T COG4280 32 KWRLALIGAVLGLALVLILTLVLGKLLYL-----------VPL----NYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKG 95 (236)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccceee-----------eec----hHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Confidence 45666778888877666666677777642 232 23346677888888888898888877654433
No 85
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=26.00 E-value=2.7e+02 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 262 IISFIIAVLTIIAFTVYAKRALKEL 286 (324)
Q Consensus 262 ~ig~v~~vv~~~~l~~~~kr~l~~~ 286 (324)
..|+++++..+ .+..+.++..++.
T Consensus 107 ~~GL~vai~~~-~~~~~l~~~~~~~ 130 (139)
T PF01618_consen 107 AYGLVVAIPAL-PFYNYLKRRVERI 130 (139)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45666666666 4444444444443
No 86
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=3.6e+02 Score=21.81 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhc
Q 020593 227 VPEAFIYIYSGRLIRTLADVK 247 (324)
Q Consensus 227 lP~~~l~~~~G~~l~~l~~~~ 247 (324)
+|....++.=+..+....+++
T Consensus 41 vPiatfF~lK~fvleg~lgis 61 (102)
T KOG4783|consen 41 VPIATFFALKFFVLEGYLGIS 61 (102)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 465555655566665555443
No 87
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=24.98 E-value=3.2e+02 Score=20.88 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020593 266 IIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 266 v~~vv~~~~l~~~~kr~l 283 (324)
++.++......++.-|+.
T Consensus 99 ~~~~~~~~i~~~~~~~~~ 116 (121)
T PF02687_consen 99 IIILLISIIASLIPIRRI 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444443433
No 88
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=24.96 E-value=8.6e+02 Score=25.91 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRA 282 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~ 282 (324)
.++++++++.+++.++..+.|+.
T Consensus 602 ~~~~~~~~g~~v~a~~~~~~k~~ 624 (631)
T PRK09765 602 GWFGAALVGAAISTAILLIWRRH 624 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHhcch
Confidence 34566666666666666666553
No 89
>COG1238 Predicted membrane protein [Function unknown]
Probab=24.75 E-value=1.6e+02 Score=25.87 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=43.8
Q ss_pred hcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 020593 195 RVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADV 246 (324)
Q Consensus 195 Rl~P~P~~lvny~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~ 246 (324)
=+.|+|-.++=...-+.+.+.+.+.+.+.+|...+.++--++|+.+.+..+.
T Consensus 31 t~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 31 TLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3568888888777777779999999999999999999999999988877554
No 90
>PF14163 SieB: Superinfection exclusion protein B
Probab=24.74 E-value=3e+02 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.499 Sum_probs=15.4
Q ss_pred cCChHHHHHHHH----HHHHHHHHHHHHH
Q 020593 117 LIPSGPSMWLAG----MIFGYGLGFVIIM 141 (324)
Q Consensus 117 ~iP~~~l~i~aG----~lFG~~~G~l~s~ 141 (324)
++|.+.+..+.= ..+++|.|.++.+
T Consensus 14 f~P~~~~~~l~l~~~~~~y~~~i~~~fl~ 42 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKYQPWIGLIFLF 42 (151)
T ss_pred HCCHHHHHHhCcchHHHhcchHHHHHHHH
Confidence 578777754332 3577777775544
No 91
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.72 E-value=1.1e+02 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.0
Q ss_pred CcccccccCCCCC
Q 020593 301 GSGFEMNKLPLER 313 (324)
Q Consensus 301 ~~~~~~~~~~~~~ 313 (324)
+++..++|++-+|
T Consensus 95 ~d~~~lkkLq~~q 107 (201)
T COG1422 95 GDMKKLKKLQEKQ 107 (201)
T ss_pred CCHHHHHHHHHHH
Confidence 4555566655444
No 92
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.58 E-value=2.1e+02 Score=25.49 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020593 54 IRWIRTLALCILLVI 68 (324)
Q Consensus 54 ~~W~k~l~l~~l~~l 68 (324)
.-+.|.+.+.+...+
T Consensus 18 s~~~~~~~iGf~gGl 32 (173)
T PF11085_consen 18 SFLAKVLEIGFFGGL 32 (173)
T ss_pred cHHHHHHHHHHHHHH
Confidence 346677666655444
No 93
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=24.53 E-value=13 Score=37.12 Aligned_cols=87 Identities=20% Similarity=0.424 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------H-HHHHHhhh--chHHHHHHHHHHcCCch------hhHHHHHHHhccc-chhhHH
Q 020593 142 VGTTIGMVLPYWVGLLFR-------D-RIHQWLKR--WPQQAAMLRLAAEGSWL------HQFRMVALFRVSP-FPYTIF 204 (324)
Q Consensus 142 ig~~lGa~l~F~lgR~~r-------~-~i~~~l~~--~~~~~~l~~l~~~~~~~------~g~~~v~l~Rl~P-~P~~lv 204 (324)
.|+++|-..+|+.+|--| + ....+-.- +....+..+..+.+.|- -||.-+.+.-=+| --|++.
T Consensus 217 ~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdla 296 (440)
T KOG1109|consen 217 AGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDLA 296 (440)
T ss_pred cccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhhc
Confidence 588999999999998532 1 11111000 00011111221212221 1455555555566 348999
Q ss_pred HHHHHhcCCCchhHHHHHHHhhHH
Q 020593 205 NYAIVVTSMRFWPYLCGSVAGMVP 228 (324)
Q Consensus 205 ny~aG~t~i~~~~F~las~iG~lP 228 (324)
...+|...++||.|+.+|++|...
T Consensus 297 Gitcghflvpfw~ffGaTLigKai 320 (440)
T KOG1109|consen 297 GITCGHFLVPFWTFFGATLIGKAI 320 (440)
T ss_pred ccccccccchHHHHhhHHHHHHHH
Confidence 999999999999999999998743
No 94
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=24.46 E-value=72 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 253 MTTVEIVYNIISFIIAVLTIIAFTVY 278 (324)
Q Consensus 253 ~s~~~~~~~~ig~v~~vv~~~~l~~~ 278 (324)
.+||.+.+..+++++.++.++++..=
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666555555443
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.32 E-value=53 Score=34.34 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc-hhccccccCCCCcccccccCCCC
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRA-LKELERG-EANGEETSTSTGSGFEMNKLPLE 312 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 312 (324)
++++++++.++++++..++.||. .+++.+- +.+++ -...+-+.|++||-..
T Consensus 4 ~~ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le~~k~~--l~~~pv~~el~kvk~l 56 (569)
T PRK04778 4 YLIIAIVVIIIIAYLAGLILRKRNYKRIDELEERKQE--LENLPVNDELEKVKKL 56 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHhcC
Confidence 34455555555555444555444 4444442 22322 2244556666665433
No 96
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.15 E-value=2.9e+02 Score=20.23 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhchhccc
Q 020593 275 FTVYAKRALKELERGEANGE 294 (324)
Q Consensus 275 l~~~~kr~l~~~~~~~~~~~ 294 (324)
+.+++--++...++.++.+|
T Consensus 25 l~Y~~I~a~~hHq~k~~a~~ 44 (59)
T PF11119_consen 25 LIYSAIGAWVHHQDKKQAQQ 44 (59)
T ss_pred HHHHHHhHHHHHHHHHhccc
Confidence 44555555655555544443
No 97
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=24.13 E-value=4.4e+02 Score=22.23 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 020593 124 MWLAGMIFGY 133 (324)
Q Consensus 124 ~i~aG~lFG~ 133 (324)
.+..|.+||.
T Consensus 76 a~~~GallGl 85 (128)
T PF09945_consen 76 ALLYGALLGL 85 (128)
T ss_pred HHHHHHHHHH
Confidence 4567777774
No 98
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=24.08 E-value=8.7e+02 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 259 VYNIISFIIAVLTIIAFTVYAKRALKE 285 (324)
Q Consensus 259 ~~~~ig~v~~vv~~~~l~~~~kr~l~~ 285 (324)
...+++++++.++..++..+.||...+
T Consensus 531 ~~~iiai~ig~vvt~~~~~~~k~~~~~ 557 (563)
T PRK10712 531 LGYLVAIIAGTLVAGLAYAFLKRPETD 557 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 345667777777776777666664433
No 99
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=23.77 E-value=98 Score=27.80 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhccccccCCCCcc
Q 020593 265 FIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSG 303 (324)
Q Consensus 265 ~v~~vv~~~~l~~~~kr~l~~~~~~~~~~~~~~~~~~~~ 303 (324)
+..++++++.+.+++||.+.+..-..+..-.++.-+.+.
T Consensus 17 ~a~g~l~~vllfIfaKRQI~Rf~lrsrrgphvp~G~~a~ 55 (186)
T PF07406_consen 17 IAYGSLVFVLLFIFAKRQIMRFALRSRRGPHVPVGHGAP 55 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCCc
Confidence 445666777888999999887776655544444444433
No 100
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=23.63 E-value=5.4e+02 Score=23.08 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHhcChhHHHHHHHHHHHhhccccCCh--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 83 EKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPS--GPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVGLLFR 159 (324)
Q Consensus 83 ~~~l~~l~~w~~~~~G~p~~~l~~i~~~~~~~~~~iP~--~~l~i~aG~l-FG~~~G~l~s~ig~~lGa~l~F~lgR~~r 159 (324)
++.++..++|.++ +|. ... |++ =++|+ +...+.+|+. ..+..=.+++++|+++=+.+-.++|..++
T Consensus 97 ~~~l~~a~~~f~r-~G~-~~v--f~~-------RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G 165 (208)
T COG0586 97 RKKLDKAELLFER-HGL-FAI--FLG-------RFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLG 165 (208)
T ss_pred HHHHHHHHHHHHH-cCc-hhh--hhh-------cccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778888886 573 221 211 12332 3334566665 23333456677788887777777777765
Q ss_pred HH
Q 020593 160 DR 161 (324)
Q Consensus 160 ~~ 161 (324)
+.
T Consensus 166 ~~ 167 (208)
T COG0586 166 EV 167 (208)
T ss_pred cc
Confidence 43
No 101
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.27 E-value=2.1e+02 Score=22.35 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 125 WLAGMIFGYG-----LGFVIIMVGTTIGMVLPYWVGLLFR 159 (324)
Q Consensus 125 i~aG~lFG~~-----~G~l~s~ig~~lGa~l~F~lgR~~r 159 (324)
+.+|++++.+ -+...+.+.+++||++.-++.|.++
T Consensus 41 ~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 41 FVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777665 2456788899999999988887654
No 102
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=23.13 E-value=8.1e+02 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=15.3
Q ss_pred hcCCCchhHHHHHHHhhHHHHHHHHHHHHhhh
Q 020593 210 VTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIR 241 (324)
Q Consensus 210 ~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~ 241 (324)
+++++ |..+.+++. -.+++|+..|-.-.
T Consensus 155 ~~gi~---~~~~iii~~-~iv~iYt~~GGl~a 182 (502)
T PRK15419 155 TFGMS---YETALWAGA-AATILYTFIGGFLA 182 (502)
T ss_pred HhCCC---HHHHHHHHH-HHHHHHHHhhhHHH
Confidence 34554 445544433 34667888776544
No 103
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=22.89 E-value=2.6e+02 Score=27.84 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=50.6
Q ss_pred HHHHHHhcC-CCchhHHHHHHHhhHHHHHHHHHHH-HhhhhhhhhccCCc-----ccchHHHHHHHHHHHHHHHHHHHHH
Q 020593 204 FNYAIVVTS-MRFWPYLCGSVAGMVPEAFIYIYSG-RLIRTLADVKYGNY-----HMTTVEIVYNIISFIIAVLTIIAFT 276 (324)
Q Consensus 204 vny~aG~t~-i~~~~F~las~iG~lP~~~l~~~~G-~~l~~l~~~~~~~~-----~~s~~~~~~~~ig~v~~vv~~~~l~ 276 (324)
+|=+.|-.+ -.|.+|++.+.+|.+-.+++.+..= ..+-...-...+.. +++..+.+..++++.+++.++++++
T Consensus 125 innCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t 204 (414)
T KOG1314|consen 125 INNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALT 204 (414)
T ss_pred hhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677554 5678899999998887766533211 11111111112222 3455677777777777777777777
Q ss_pred HHHHHHHHHHHhc
Q 020593 277 VYAKRALKELERG 289 (324)
Q Consensus 277 ~~~kr~l~~~~~~ 289 (324)
...-+.++.+.+.
T Consensus 205 ~Lf~~qlk~Il~n 217 (414)
T KOG1314|consen 205 MLFFIQLKQILNN 217 (414)
T ss_pred HHHHHHHHHHHcC
Confidence 7766666654443
No 104
>COG4720 Predicted membrane protein [Function unknown]
Probab=22.84 E-value=2.5e+02 Score=25.11 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhccccCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 101 VLAIVLIASLALFPVFLIPS--------GPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL 156 (324)
Q Consensus 101 ~~~l~~i~~~~~~~~~~iP~--------~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR 156 (324)
..+++++....+. +|.|. .....++.++||+..|.+...+|..+=+.++++=.-
T Consensus 15 ~aALvvvlg~~i~--IPtp~~~~~i~L~da~i~las~lfGs~~G~lvg~iG~al~Dll~gy~~W 76 (177)
T COG4720 15 GAALVVVLGRLIR--IPTPIPNGFLTLGDAGIALASFLFGSRAGALVGGLGHALKDLLSGYPSW 76 (177)
T ss_pred HHHHHHHHHheeE--ecCCCCCCeeeHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCCccH
Confidence 4445555554333 34454 355677788999999999999999888888754433
No 105
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.84 E-value=1.7e+02 Score=23.06 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=9.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHH
Q 020593 55 RWIRTLALCI-LLVIIILIFLK 75 (324)
Q Consensus 55 ~W~k~l~l~~-l~~l~~~~~~~ 75 (324)
+|-+-+.+.+ ++.++-+++++
T Consensus 31 ~W~~p~m~~lmllGL~WiVvyY 52 (87)
T PF06781_consen 31 RWYAPLMLGLMLLGLLWIVVYY 52 (87)
T ss_pred ccHHHHHHHHHHHHHHHHhhhh
Confidence 3555444444 44444444333
No 106
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=22.73 E-value=5.8e+02 Score=23.15 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCC--cccchHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 020593 207 AIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGN--YHMTTVEIVYNIISFIIAVLTIIAFT--VYAKRA 282 (324)
Q Consensus 207 ~aG~t~i~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~--~~~s~~~~~~~~ig~v~~vv~~~~l~--~~~kr~ 282 (324)
..|+-..+...|+....++.+.. .+...+|..++...+.-... ..+ | ..+-.+++.++.+++++.+. ...++.
T Consensus 80 lmg~~~~~~~~~~~~~~va~~~~-~~ll~~~r~~~~~~r~l~~~l~r~l-P-~~va~~~~~~~v~~l~~~l~~gvl~~~~ 156 (208)
T PF15420_consen 80 LMGMPPIGPAHYLLVVLVALLVF-ALLLLLGRGLRRLVRWLARRLRRFL-P-RRVARVVGVVVVVVLVVALVDGVLVRGA 156 (208)
T ss_pred HhCCCCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc-c-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34555666777887777765443 34555676666554332211 112 2 22344445444444443332 344555
Q ss_pred HHHHHh
Q 020593 283 LKELER 288 (324)
Q Consensus 283 l~~~~~ 288 (324)
++.+++
T Consensus 157 l~~~~~ 162 (208)
T PF15420_consen 157 LRAADR 162 (208)
T ss_pred HHHHHH
Confidence 555443
No 107
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=22.45 E-value=42 Score=30.84 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 216 WPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKR 281 (324)
Q Consensus 216 ~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr 281 (324)
+.+.+.|++- +|.+++..+.|-....+.... +++.+ +.++.+++++++.+++.++.||
T Consensus 235 ~~LT~~t~if-lPlt~i~g~fGMN~~~~p~~~------~~~g~-~~~~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 235 KVLTIVTAIF-LPLTFITGIFGMNFKGMPELD------WPYGY-FFVIILGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHH-HHHHHHTTSTTS-SS---SSS------SSS-S-HHH--HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHH-HHHHHHHHHhhCCccCCCccC------CccHH-HHHHHHHHHHHHHHHHHHheeC
Confidence 4455666665 788888888887776543211 11111 2222344555555566666554
No 108
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.39 E-value=9.2e+02 Score=27.78 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHH------HHHHHHHhcChhHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Q 020593 60 LALCILLVIIILIFLKWGVPFLFEKVLFP------LMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGY 133 (324)
Q Consensus 60 l~l~~l~~l~~~~~~~~~~~~~~~~~l~~------l~~w~~~~~G~p~~~l~~i~~~~~~~~~~iP~~~l~i~aG~lFG~ 133 (324)
+++++++++++..+..+-..+.-...... ....+.+. .-..++++++++.+..+.++.+.+.+++|. .|.
T Consensus 836 ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~i~~l---~~y~I~~ig~l~~L~~lGI~~t~l~al~ga-lGV 911 (1109)
T PRK10929 836 VLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTI---TKYLLMLIGGLVGFSMIGIEWSKLQWLVAA-LGV 911 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH---HHHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHH
Q 020593 134 GLGFVI-IMVGTTIGMVLPYW 153 (324)
Q Consensus 134 ~~G~l~-s~ig~~lGa~l~F~ 153 (324)
..|+.. -+++..+|..+..+
T Consensus 912 gIGfAlQ~ilsNfiSGIiIL~ 932 (1109)
T PRK10929 912 GLGFGLQEIFANFISGLIILF 932 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 109
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=22.22 E-value=3.1e+02 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 020593 142 VGTTIGMVLPYWVGLLFRDRIHQWLKRWPQ 171 (324)
Q Consensus 142 ig~~lGa~l~F~lgR~~r~~i~~~l~~~~~ 171 (324)
+-..+|....-+++|++-+++++.+.|-|.
T Consensus 7 ~i~~iG~l~~~~~g~~l~~~~e~ll~riP~ 36 (108)
T PF04367_consen 7 LIFLIGLLARNYFGKWLLNWLERLLQRIPL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 344556666677777776777777777664
No 110
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.18 E-value=2.8e+02 Score=23.09 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhh
Q 020593 229 EAFIYIYSGRLI 240 (324)
Q Consensus 229 ~~~l~~~~G~~l 240 (324)
..+.|+++|...
T Consensus 70 RGlfyif~G~l~ 81 (136)
T PF08507_consen 70 RGLFYIFLGTLC 81 (136)
T ss_pred HHHHHHHHHHHH
Confidence 344555666554
No 111
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=22.07 E-value=1.3e+02 Score=20.95 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHhh
Q 020593 144 TTIGMVLPYWVGLLF----RDRIHQWLK 167 (324)
Q Consensus 144 ~~lGa~l~F~lgR~~----r~~i~~~l~ 167 (324)
..+++.+.+++|.+. ++.++|.++
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~~~~l~ 44 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLVRRLLE 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444 444444443
No 112
>COG3368 Predicted permease [General function prediction only]
Probab=22.06 E-value=2.7e+02 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=16.5
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHhh
Q 020593 216 WPYLCGSVAGMVPEAFIYIYSGRLI 240 (324)
Q Consensus 216 ~~F~las~iG~lP~~~l~~~~G~~l 240 (324)
-.+++-+++=..|.++++.|.++.+
T Consensus 218 ~k~~~lsl~Y~al~~~l~~y~~rk~ 242 (465)
T COG3368 218 AKGFILSLLYAALSAFLFLYGNRKL 242 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555678888899988843
No 113
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=21.59 E-value=2.4e+02 Score=23.85 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q 020593 281 RALKELERG 289 (324)
Q Consensus 281 r~l~~~~~~ 289 (324)
|..++++++
T Consensus 90 k~~~k~~~~ 98 (127)
T TIGR00220 90 KAINKLRRK 98 (127)
T ss_pred HHHHHHHHh
Confidence 455555443
No 114
>COG4327 Predicted membrane protein [Function unknown]
Probab=21.44 E-value=1.6e+02 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 020593 47 ETRTKSLIRWIRTLALCILLVIIILI 72 (324)
Q Consensus 47 ~~~~~~~~~W~k~l~l~~l~~l~~~~ 72 (324)
++.+|.-.+|...++.+-.++-.+++
T Consensus 11 ~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 11 RAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455445666666665555544443
No 115
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=21.40 E-value=1.6e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020593 127 AGMIFGYGLGFVIIMVGTTIGM 148 (324)
Q Consensus 127 aG~lFG~~~G~l~s~ig~~lGa 148 (324)
.|.+||...|+++.++-..++.
T Consensus 50 iGIlYG~viGlli~~i~~~~~~ 71 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSP 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776665555443
No 116
>PRK10429 melibiose:sodium symporter; Provisional
Probab=21.22 E-value=2e+02 Score=28.70 Aligned_cols=9 Identities=11% Similarity=0.205 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 020593 280 KRALKELER 288 (324)
Q Consensus 280 kr~l~~~~~ 288 (324)
+++.+++++
T Consensus 437 ~~~~~~i~~ 445 (473)
T PRK10429 437 GDFLRRIQI 445 (473)
T ss_pred HHHHHHHHH
Confidence 444444443
No 117
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.20 E-value=2e+02 Score=21.30 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 020593 140 IMVGTTIGMVLPYWVG----LLFRDRIHQWLK 167 (324)
Q Consensus 140 s~ig~~lGa~l~F~lg----R~~r~~i~~~l~ 167 (324)
.++|+++|+.++++++ +-.|+.+.+...
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~ 36 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKETREKLKDKAE 36 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 3567788888888874 445666655443
No 118
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.16 E-value=2.7e+02 Score=23.02 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020593 54 IRWIRTLALCILLVIIIL 71 (324)
Q Consensus 54 ~~W~k~l~l~~l~~l~~~ 71 (324)
.+|+.+++.++++++.++
T Consensus 39 ~pwK~I~la~~Lli~G~~ 56 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTV 56 (115)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368777666655554443
No 119
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=21.10 E-value=9.1e+02 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.5
Q ss_pred CCCchhHHHHHHHhhHHHH
Q 020593 212 SMRFWPYLCGSVAGMVPEA 230 (324)
Q Consensus 212 ~i~~~~F~las~iG~lP~~ 230 (324)
++.|+--..+...|...|.
T Consensus 133 ~vdYpllvAaaY~g~~vWh 151 (453)
T PF02667_consen 133 GVDYPLLVAAAYSGFVVWH 151 (453)
T ss_pred CCcHHHHHHHHHHHHHHHh
Confidence 4556555555556655443
No 120
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.92 E-value=3e+02 Score=19.10 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020593 265 FIIAVLTIIAFTVYAKRA 282 (324)
Q Consensus 265 ~v~~vv~~~~l~~~~kr~ 282 (324)
+++++.+-+++.+|-|-.
T Consensus 13 Iil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 13 IILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555556666765443
No 121
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=2.6e+02 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020593 137 FVIIMVGTTIGMVLPYWVGLLFR 159 (324)
Q Consensus 137 ~l~s~ig~~lGa~l~F~lgR~~r 159 (324)
..++.+|-++|-+++|++.|...
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45677888889999999999763
No 122
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=20.35 E-value=4.8e+02 Score=21.29 Aligned_cols=44 Identities=27% Similarity=0.500 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020593 124 MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKR 168 (324)
Q Consensus 124 ~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lgR~~r~~i~~~l~~ 168 (324)
.++.+...|+..|+.-.. .+.+|-.++++++.++.+.+.+++++
T Consensus 8 i~l~~~~~G~~rG~~~~~-~~l~~~i~a~~~a~~~~~~~~~~l~~ 51 (146)
T PF02674_consen 8 ILLIFAIKGYRRGFIREL-FSLIGLIVALFVAFLFYPPLAPFLSN 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778777764332 23335555556665555555554444
No 123
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=2.1e+02 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhchhccccccCCCCccccccc
Q 020593 276 TVYAKRALKELERGEANGEETSTSTGSGFEMNK 308 (324)
Q Consensus 276 ~~~~kr~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (324)
.+|-|..++..+- .+.++++..|.+.+|
T Consensus 72 P~y~rn~LkW~~P-----a~esssdd~d~g~kk 99 (101)
T KOG4112|consen 72 PWYRRNPLKWAQP-----AIESSSDDKDKGTKK 99 (101)
T ss_pred hhhhcCcccccCC-----ccccccccCCccccc
Confidence 3666655555443 234567777777766
No 124
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.19 E-value=1.6e+02 Score=28.23 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=33.6
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 214 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKR 281 (324)
Q Consensus 214 ~~~~F~las~iG~lP~~~l~~~~G~~l~~l~~~~~~~~~~s~~~~~~~~ig~v~~vv~~~~l~~~~kr 281 (324)
-.+.+.+.|.+ .+|.|++..+.|-....+...+ .+.. |. +.+++.+++.+++++|.||
T Consensus 261 imk~LTi~s~i-flPpTlIagiyGMNf~~mPel~------~~~G--y~-~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 261 IMKILTIVSTI-FLPPTLITGFYGMNFKGMPELD------WPYG--YP-IALILMLLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHHH-HHhhHHHHcccccCCCCCcCCC------Cccc--HH-HHHHHHHHHHHHHHHHHHh
Confidence 34556666655 4688888888888877643321 1111 22 2344555566667777765
No 125
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.13 E-value=6.4e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHH
Q 020593 123 SMWLAGMIFGYGLGFVIIM-VGTTIGMVLPYWVGLL-FRDRI 162 (324)
Q Consensus 123 l~i~aG~lFG~~~G~l~s~-ig~~lGa~l~F~lgR~-~r~~i 162 (324)
++...|+.+|...+-.+.- .+..+|+.+-.++|=+ +.+.+
T Consensus 42 ~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 42 LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766655544 6778888888888844 35444
No 126
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.09 E-value=1.7e+02 Score=25.86 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFT 276 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~ 276 (324)
++++|+++++++.+.+.
T Consensus 51 ~NllGVil~~~~~~~~l 67 (165)
T PF11286_consen 51 WNLLGVILGLLLTSALL 67 (165)
T ss_pred eeHHHHHHHHHHHHHHH
Confidence 35667777766666654
No 127
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.00 E-value=1.6e+02 Score=22.15 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=13.6
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 254 TTVEIVY-NIISFIIAVLTIIAFTVYAKRALK 284 (324)
Q Consensus 254 s~~~~~~-~~ig~v~~vv~~~~l~~~~kr~l~ 284 (324)
+|.||.. .+++-++.-++..+.-+|.|++-+
T Consensus 29 sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~d 60 (68)
T PF04971_consen 29 SPSQWAAIGVIGGIFFGLLTYLTNLYFKIKED 60 (68)
T ss_pred CcccchhHHHHHHHHHHHHHHHhHhhhhhhHh
Confidence 4555532 222323333334455567765433
Done!