Query 020593
Match_columns 324
No_of_seqs 305 out of 1789
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9j_B Integrin beta-3; transm 53.6 29 0.00098 22.7 5.0 31 261-291 12-42 (43)
2 2knc_B Integrin beta-3; transm 44.4 29 0.00098 25.7 4.4 14 280-293 41-54 (79)
3 1pi7_A VPU protein, U ORF prot 44.1 57 0.0019 20.6 5.1 28 261-288 7-34 (36)
4 2k1k_A Ephrin type-A receptor 36.2 65 0.0022 20.4 4.5 29 252-280 7-35 (38)
5 3p5n_A RIBU, riboflavin uptake 35.4 22 0.00075 30.3 2.8 31 120-150 47-77 (189)
6 2jwa_A Receptor tyrosine-prote 33.6 72 0.0025 21.0 4.5 25 257-281 13-37 (44)
7 4ezc_A UREA transporter 1; mem 31.1 1.2E+02 0.0042 28.9 7.6 68 85-155 36-106 (384)
8 1ots_A Voltage-gated CLC-type 30.7 2.4E+02 0.0083 27.1 9.9 15 144-158 425-439 (465)
9 1afo_A Glycophorin A; integral 27.9 68 0.0023 20.6 3.4 27 257-283 11-37 (40)
10 2knc_B Integrin beta-3; transm 26.2 98 0.0034 22.7 4.7 28 262-289 14-41 (79)
11 1s4x_A Integrin beta-3; cell a 22.1 51 0.0017 23.7 2.3 33 262-294 11-43 (67)
No 1
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=53.57 E-value=29 Score=22.68 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 020593 261 NIISFIIAVLTIIAFTVYAKRALKELERGEA 291 (324)
Q Consensus 261 ~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~ 291 (324)
.+.|.+.+++++..+.....|.+..++++++
T Consensus 12 Iv~gvi~~ivliGl~lLliwk~~~~i~DrrE 42 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIWKLLITIHDRKE 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheehhhc
Confidence 3446666677666777777888887776653
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.40 E-value=29 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=7.6
Q ss_pred HHHHHHHHhchhcc
Q 020593 280 KRALKELERGEANG 293 (324)
Q Consensus 280 kr~l~~~~~~~~~~ 293 (324)
||..+|.++|++++
T Consensus 41 rrE~~kFEkE~~~~ 54 (79)
T 2knc_B 41 RKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 55556665554443
No 3
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=44.10 E-value=57 Score=20.57 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020593 261 NIISFIIAVLTIIAFTVYAKRALKELER 288 (324)
Q Consensus 261 ~~ig~v~~vv~~~~l~~~~kr~l~~~~~ 288 (324)
.+++++++.+..+.++.+.-+..+|..+
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555544
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=36.17 E-value=65 Score=20.39 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 252 HMTTVEIVYNIISFIIAVLTIIAFTVYAK 280 (324)
Q Consensus 252 ~~s~~~~~~~~ig~v~~vv~~~~l~~~~k 280 (324)
.+|...+.-.++|.++.++++.++.++..
T Consensus 7 ~ls~GaIAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 7 GLTGGEIVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeehHHHHHHHHHHHHHHHHe
Confidence 45655555566677766666666666553
No 5
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=35.36 E-value=22 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 120 SGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 150 (324)
Q Consensus 120 ~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l 150 (324)
++...+.+|+++|++.|.+...++..++..+
T Consensus 47 ~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 47 SDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999988887777776654
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.56 E-value=72 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 257 EIVYNIISFIIAVLTIIAFTVYAKR 281 (324)
Q Consensus 257 ~~~~~~ig~v~~vv~~~~l~~~~kr 281 (324)
.+.-.++|+++.+++...+.+|.||
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhheeh
Confidence 3455667766666666666677765
No 7
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=31.14 E-value=1.2e+02 Score=28.89 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcChhH-HHHHHHHHHHhhccccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 85 VLFPLMQWEATAFGRPV-LAIVLIASLALFPVFLIP--SGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVG 155 (324)
Q Consensus 85 ~l~~l~~w~~~~~G~p~-~~l~~i~~~~~~~~~~iP--~~~l~i~aG~lFG~~~G~l~s~ig~~lGa~l~F~lg 155 (324)
.+.++.+|.++. |. .-++-...--+-++++.+ .+-+.++.|..++-++-.+.+++|+.+|...+.+++
T Consensus 36 ~~~~~~~~~~~~---~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 36 DMKEFANWLKDK---PQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp TCHHHHHHHHTS---CHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHhcC---CcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 456789999864 32 112111222223444554 444567788888776666777777777766666554
No 8
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=30.74 E-value=2.4e+02 Score=27.12 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020593 144 TTIGMVLPYWVGLLF 158 (324)
Q Consensus 144 ~~lGa~l~F~lgR~~ 158 (324)
.++.+.++|++++.+
T Consensus 425 l~ia~~iA~~v~~~~ 439 (465)
T 1ots_A 425 MIITGLGATLLAQFT 439 (465)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 345566666666544
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.87 E-value=68 Score=20.60 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 257 EIVYNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 257 ~~~~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
..+..+.+..+.++.++++.-|.-|.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888877775544
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.25 E-value=98 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020593 262 IISFIIAVLTIIAFTVYAKRALKELERG 289 (324)
Q Consensus 262 ~ig~v~~vv~~~~l~~~~kr~l~~~~~~ 289 (324)
+.|++.+++++.++.+...|.+..++++
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555566666666555443
No 11
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=22.08 E-value=51 Score=23.68 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc
Q 020593 262 IISFIIAVLTIIAFTVYAKRALKELERGEANGE 294 (324)
Q Consensus 262 ~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~~~ 294 (324)
++|+++.++--+++++.=||..++.++|+++..
T Consensus 11 liGl~lLliwKll~~i~DrrEyakFE~Er~~ak 43 (67)
T 1s4x_A 11 SGLVPRGSHMKLLITIHDRKEFAKFEEERARAK 43 (67)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcc
Confidence 456666666666777888999999988877663
Done!