Query 020593
Match_columns 324
No_of_seqs 305 out of 1789
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90a3 f.23.23.1 (A:248-292) 21.7 84 0.0061 19.1 5.0 33 260-292 6-38 (45)
2 d2oara1 f.16.1.1 (A:10-118) Ga 20.9 35 0.0025 24.9 3.3 17 277-293 79-95 (109)
3 d1q90m_ f.23.25.1 (M:) PetM su 14.7 1E+02 0.0075 17.2 4.2 25 132-156 3-28 (34)
4 d1vf5c3 f.23.23.1 (C:250-286) 9.4 63 0.0046 18.9 1.4 24 260-283 7-30 (37)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 9.3 1.3E+02 0.0095 19.8 3.5 19 270-288 13-31 (86)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 8.5 2.5E+02 0.018 19.3 5.1 15 265-279 11-25 (158)
7 d2iuba2 f.17.3.1 (A:286-349) M 7.9 41 0.003 21.6 0.1 17 227-243 17-33 (64)
8 d1a87a_ f.1.1.1 (A:) Colicin N 7.6 4.9E+02 0.036 21.6 7.1 11 22-32 50-60 (297)
9 d1k8ke_ a.148.1.1 (E:) Arp2/3 5.8 83 0.006 24.7 0.9 20 271-290 66-85 (174)
10 d1q90g_ f.23.26.1 (G:) PetG su 5.6 2.6E+02 0.019 15.2 3.8 20 217-236 4-23 (30)
No 1
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.68 E-value=84 Score=19.11 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRALKELERGEAN 292 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l~~~~~~~~~ 292 (324)
...+.+++++++.=.+.+..||...+.+..|-+
T Consensus 6 ~gll~F~~~v~laQi~LVLKKKQfEKVQ~aEmN 38 (45)
T d1q90a3 6 QGLLVFFSFVLLTQVLLVLKKKQFEKVQLAEMN 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777767777778888888766543
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.95 E-value=35 Score=24.93 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhchhcc
Q 020593 277 VYAKRALKELERGEANG 293 (324)
Q Consensus 277 ~~~kr~l~~~~~~~~~~ 293 (324)
+...+..++++++++.+
T Consensus 79 F~vvk~~n~~~~k~~~~ 95 (109)
T d2oara1 79 FLVVLPYNTLRKKGEVE 95 (109)
T ss_dssp HHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 34467778877655433
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.71 E-value=1e+02 Score=17.18 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020593 132 GYGLGFVIIMVGTT-IGMVLPYWVGL 156 (324)
Q Consensus 132 G~~~G~l~s~ig~~-lGa~l~F~lgR 156 (324)
|+..|+.+.++|.+ +|-.++|.+-|
T Consensus 3 ~fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 3 EFIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchhHHHHHHHHHHHHHHHhhee
Confidence 34456666666654 45555555544
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.41 E-value=63 Score=18.92 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020593 260 YNIISFIIAVLTIIAFTVYAKRAL 283 (324)
Q Consensus 260 ~~~ig~v~~vv~~~~l~~~~kr~l 283 (324)
...+.+++++++.=.+....||..
T Consensus 7 ~gl~~F~~~v~laQi~lVlKKKQ~ 30 (37)
T d1vf5c3 7 KWMIAFICLVMLAQLMLILKKKQV 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666655555555555443
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.31 E-value=1.3e+02 Score=19.84 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020593 270 LTIIAFTVYAKRALKELER 288 (324)
Q Consensus 270 v~~~~l~~~~kr~l~~~~~ 288 (324)
.....+..+.+|.+++..+
T Consensus 13 ~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 13 IVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555443
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.46 E-value=2.5e+02 Score=19.31 Aligned_cols=15 Identities=27% Similarity=0.611 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020593 265 FIIAVLTIIAFTVYA 279 (324)
Q Consensus 265 ~v~~vv~~~~l~~~~ 279 (324)
.+++|++.++++-|.
T Consensus 11 aIIgILaaia~P~~~ 25 (158)
T d2pila_ 11 AIVGILAAVALPAYQ 25 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.95 E-value=41 Score=21.64 Aligned_cols=17 Identities=24% Similarity=0.254 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 020593 227 VPEAFIYIYSGRLIRTL 243 (324)
Q Consensus 227 lP~~~l~~~~G~~l~~l 243 (324)
+|.+++..+.|-....+
T Consensus 17 lP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 17 MPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHTTSCC------
T ss_pred HHHHHHHhhhccCCCCC
Confidence 56666666666655443
No 8
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=7.62 E-value=4.9e+02 Score=21.57 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=5.1
Q ss_pred CCCeeEEeecC
Q 020593 22 DSEYVRLVISD 32 (324)
Q Consensus 22 ~~~~~~~~~~~ 32 (324)
++.||+.+.|+
T Consensus 50 ~~~~~~~~~~~ 60 (297)
T d1a87a_ 50 KGQYVKVTVPD 60 (297)
T ss_dssp TTCEEEEEEGG
T ss_pred CcceEEEecCC
Confidence 34455554443
No 9
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.79 E-value=83 Score=24.75 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhch
Q 020593 271 TIIAFTVYAKRALKELERGE 290 (324)
Q Consensus 271 ~~~~l~~~~kr~l~~~~~~~ 290 (324)
+++++++|....+++++...
T Consensus 66 ~LIYltlyiseCL~kl~~~~ 85 (174)
T d1k8ke_ 66 TLIYITLYISECLKKLQKCN 85 (174)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred eeeehHHHHHHHHHHHhcCc
Confidence 45678888888888887653
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.58 E-value=2.6e+02 Score=15.18 Aligned_cols=20 Identities=40% Similarity=0.871 Sum_probs=12.5
Q ss_pred hHHHHHHHhhHHHHHHHHHH
Q 020593 217 PYLCGSVAGMVPEAFIYIYS 236 (324)
Q Consensus 217 ~F~las~iG~lP~~~l~~~~ 236 (324)
+.+.+-.+|.+|.++.-.+.
T Consensus 4 ~ll~GivlGlipiTl~Glfv 23 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTIAGLFV 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHHHHHHH
Confidence 34566677888877654443
Done!