Query 020595
Match_columns 324
No_of_seqs 174 out of 1283
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 100.0 1E-56 2.2E-61 409.8 37.9 284 28-318 7-296 (304)
2 PRK09509 fieF ferrous iron eff 100.0 4.2E-54 9.2E-59 394.5 39.0 276 31-313 8-288 (299)
3 PRK03557 zinc transporter ZitB 100.0 1E-52 2.2E-57 386.8 34.7 276 33-317 18-297 (312)
4 COG1230 CzcD Co/Zn/Cd efflux s 100.0 3.8E-49 8.2E-54 352.1 31.7 274 30-313 18-295 (296)
5 TIGR01297 CDF cation diffusion 100.0 4.3E-49 9.3E-54 356.7 31.7 260 46-312 2-268 (268)
6 KOG1485 Mitochondrial Fe2+ tra 100.0 1.7E-48 3.6E-53 356.3 31.5 320 1-320 81-408 (412)
7 PF01545 Cation_efflux: Cation 100.0 1.4E-47 3.1E-52 349.5 15.9 273 36-314 1-283 (284)
8 KOG1482 Zn2+ transporter [Inor 100.0 6.8E-35 1.5E-39 262.4 20.7 274 32-315 71-369 (379)
9 KOG1483 Zn2+ transporter ZNT1 100.0 9E-35 1.9E-39 262.5 13.6 273 35-317 10-375 (404)
10 KOG1484 Putative Zn2+ transpor 100.0 6.3E-33 1.4E-37 246.2 24.6 280 23-313 24-348 (354)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.4E-29 3E-34 216.5 22.2 277 28-312 14-309 (314)
12 KOG2802 Membrane protein HUEL 99.9 5.4E-22 1.2E-26 177.6 13.8 235 32-309 205-502 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.5 1.2E-06 2.6E-11 80.5 12.0 95 31-133 118-212 (304)
14 PRK09509 fieF ferrous iron eff 98.3 1E-05 2.3E-10 74.3 12.1 91 35-133 120-210 (299)
15 TIGR01297 CDF cation diffusion 98.3 7E-06 1.5E-10 74.1 10.8 92 34-133 98-189 (268)
16 PRK03557 zinc transporter ZitB 97.6 0.00074 1.6E-08 62.5 11.0 88 38-133 130-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 96.3 0.015 3.3E-07 54.7 7.6 89 37-133 234-322 (412)
18 PF01545 Cation_efflux: Cation 95.0 0.043 9.4E-07 49.7 5.4 91 36-133 109-202 (284)
19 PF14535 AMP-binding_C_2: AMP- 93.1 1.3 2.7E-05 33.3 9.3 71 240-312 7-79 (96)
20 COG1230 CzcD Co/Zn/Cd efflux s 92.4 2.9 6.2E-05 38.3 12.0 72 163-234 42-121 (296)
21 KOG1484 Putative Zn2+ transpor 90.1 4.2 9.1E-05 37.6 10.6 86 146-231 38-131 (354)
22 PF03780 Asp23: Asp23 family; 89.9 5.3 0.00012 30.3 9.9 52 259-310 50-105 (108)
23 TIGR02898 spore_YhcN_YlaJ spor 88.7 3.6 7.9E-05 34.0 8.5 70 237-312 54-124 (158)
24 COG4858 Uncharacterized membra 87.4 17 0.00036 30.8 12.6 105 113-221 102-212 (226)
25 PF07444 Ycf66_N: Ycf66 protei 87.2 9.8 0.00021 27.9 9.6 47 176-222 32-81 (84)
26 PF09580 Spore_YhcN_YlaJ: Spor 86.3 5.2 0.00011 33.5 8.5 70 235-312 73-143 (177)
27 TIGR03406 FeS_long_SufT probab 81.5 16 0.00034 30.8 9.2 76 235-313 71-157 (174)
28 PRK14637 hypothetical protein; 81.2 16 0.00034 30.0 8.9 83 238-323 10-92 (151)
29 COG1183 PssA Phosphatidylserin 80.7 30 0.00065 30.6 11.1 83 144-228 37-119 (234)
30 PRK14635 hypothetical protein; 78.6 27 0.0006 28.9 9.7 88 233-323 2-93 (162)
31 COG0779 Uncharacterized protei 78.0 17 0.00036 29.9 8.0 71 254-324 23-94 (153)
32 PF00873 ACR_tran: AcrB/AcrD/A 75.6 1.3E+02 0.0027 32.8 20.5 44 267-310 558-601 (1021)
33 PRK14647 hypothetical protein; 73.7 44 0.00096 27.6 9.7 70 254-323 23-93 (159)
34 PF10934 DUF2634: Protein of u 73.2 22 0.00047 27.6 7.3 51 225-276 52-107 (112)
35 TIGR02945 SUF_assoc FeS assemb 71.8 39 0.00084 25.2 9.2 48 266-316 37-84 (99)
36 COG3696 Putative silver efflux 71.5 33 0.00072 36.2 9.9 71 237-308 577-655 (1027)
37 PRK14638 hypothetical protein; 70.2 57 0.0012 26.7 9.4 70 254-323 23-94 (150)
38 PRK14640 hypothetical protein; 69.8 57 0.0012 26.7 9.4 70 254-323 21-91 (152)
39 PRK14634 hypothetical protein; 68.2 58 0.0012 26.8 9.1 70 254-323 22-94 (155)
40 PRK00092 ribosome maturation p 66.7 70 0.0015 26.2 9.6 80 239-321 10-90 (154)
41 PF01883 DUF59: Domain of unkn 65.9 14 0.00031 25.7 4.5 40 265-307 33-72 (72)
42 PRK14646 hypothetical protein; 65.1 46 0.001 27.4 8.0 70 254-323 22-94 (155)
43 PRK00907 hypothetical protein; 64.1 50 0.0011 24.6 7.2 62 234-303 26-89 (92)
44 PF13710 ACT_5: ACT domain; PD 64.0 25 0.00055 24.0 5.3 61 236-305 3-63 (63)
45 PRK14630 hypothetical protein; 63.7 78 0.0017 25.6 9.3 81 238-323 10-91 (143)
46 cd04870 ACT_PSP_1 CT domains f 63.6 48 0.001 23.2 8.1 67 235-311 9-75 (75)
47 PF09877 DUF2104: Predicted me 62.9 32 0.00069 25.9 5.8 31 79-116 67-97 (99)
48 PRK14633 hypothetical protein; 62.5 85 0.0018 25.6 9.5 82 238-323 6-88 (150)
49 PRK14641 hypothetical protein; 61.3 90 0.002 26.2 9.1 44 254-297 24-67 (173)
50 PRK14639 hypothetical protein; 60.5 51 0.0011 26.6 7.3 70 254-323 12-82 (140)
51 COG4956 Integral membrane prot 59.2 1.5E+02 0.0033 27.4 16.4 35 200-234 108-142 (356)
52 cd02411 archeal_30S_S3_KH K ho 58.8 42 0.00092 24.4 6.0 70 240-311 13-82 (85)
53 TIGR03221 muco_delta muconolac 58.1 75 0.0016 23.6 7.3 24 268-291 2-25 (90)
54 PF01037 AsnC_trans_reg: AsnC 57.9 57 0.0012 22.3 6.5 59 237-309 10-70 (74)
55 cd02413 40S_S3_KH K homology R 57.5 27 0.00059 25.3 4.8 43 254-296 18-63 (81)
56 TIGR00439 ftsX putative protei 56.2 1.3E+02 0.0028 27.8 10.1 71 231-305 73-161 (309)
57 PRK11023 outer membrane lipopr 56.1 33 0.00071 29.2 5.8 68 228-310 80-150 (191)
58 TIGR00489 aEF-1_beta translati 55.0 66 0.0014 23.8 6.5 68 235-308 15-83 (88)
59 PF02790 COX2_TM: Cytochrome C 54.6 55 0.0012 23.3 6.1 33 89-121 50-82 (84)
60 COG1279 Lysine efflux permease 53.3 1.4E+02 0.003 25.7 9.0 61 168-228 34-94 (202)
61 COG2098 Uncharacterized protei 53.0 25 0.00054 26.9 4.0 37 281-317 35-71 (116)
62 cd04900 ACT_UUR-like_1 ACT dom 52.8 75 0.0016 22.0 6.7 42 235-279 11-52 (73)
63 COG2151 PaaD Predicted metal-s 52.5 79 0.0017 24.5 6.8 75 235-312 10-92 (111)
64 PRK04998 hypothetical protein; 52.3 91 0.002 22.9 7.1 59 235-303 25-85 (88)
65 cd02412 30S_S3_KH K homology R 51.5 74 0.0016 24.4 6.6 56 255-311 50-105 (109)
66 PRK02047 hypothetical protein; 50.1 1E+02 0.0022 22.8 7.1 62 235-304 26-89 (91)
67 TIGR00473 pssA CDP-diacylglyce 49.8 1.4E+02 0.0031 24.3 11.8 81 144-227 22-102 (151)
68 TIGR02159 PA_CoA_Oxy4 phenylac 49.1 1E+02 0.0022 25.1 7.3 42 265-310 24-65 (146)
69 PF02576 DUF150: Uncharacteris 49.0 73 0.0016 25.5 6.5 65 254-318 11-76 (141)
70 PRK14632 hypothetical protein; 48.7 1.6E+02 0.0035 24.6 9.3 69 254-323 23-92 (172)
71 PRK11152 ilvM acetolactate syn 47.5 1E+02 0.0022 22.0 6.5 63 235-307 13-75 (76)
72 cd04888 ACT_PheB-BS C-terminal 47.0 92 0.002 21.3 7.0 63 236-307 11-74 (76)
73 PRK00435 ef1B elongation facto 46.3 1E+02 0.0022 22.8 6.3 68 235-308 15-83 (88)
74 PRK15031 5-carboxymethyl-2-hyd 45.1 1.5E+02 0.0033 23.4 8.9 74 235-310 18-108 (126)
75 PRK14645 hypothetical protein; 43.6 1.8E+02 0.004 23.8 9.8 70 254-323 24-96 (154)
76 PF06570 DUF1129: Protein of u 43.5 2.1E+02 0.0046 24.5 11.3 134 21-167 64-202 (206)
77 PF13291 ACT_4: ACT domain; PD 43.2 1.1E+02 0.0025 21.3 8.4 60 236-305 17-78 (80)
78 PRK11589 gcvR glycine cleavage 42.9 2.1E+02 0.0046 24.3 8.9 72 235-316 105-182 (190)
79 COG2921 Uncharacterized conser 42.2 1.4E+02 0.003 22.1 6.8 62 234-303 24-87 (90)
80 COG4035 Predicted membrane pro 41.6 27 0.00058 25.9 2.5 43 67-116 61-104 (108)
81 PF11654 DUF2665: Protein of u 41.1 27 0.00059 22.5 2.2 19 199-217 4-22 (47)
82 PRK00341 hypothetical protein; 40.8 1.5E+02 0.0032 22.0 6.9 60 235-303 27-88 (91)
83 PRK10614 multidrug efflux syst 40.1 2.7E+02 0.0059 30.4 11.0 65 235-300 56-120 (1025)
84 cd00491 4Oxalocrotonate_Tautom 40.0 1E+02 0.0023 19.9 5.3 42 272-313 3-46 (58)
85 PRK04191 rps3p 30S ribosomal p 39.6 1.2E+02 0.0025 26.3 6.6 71 239-311 14-84 (207)
86 PF11712 Vma12: Endoplasmic re 39.5 99 0.0021 24.9 5.9 26 37-62 78-103 (142)
87 TIGR03341 YhgI_GntY IscR-regul 39.4 2.4E+02 0.0052 24.0 9.0 81 235-317 103-188 (190)
88 PRK14643 hypothetical protein; 38.5 2.3E+02 0.005 23.5 9.3 70 254-323 24-98 (164)
89 PF00368 HMG-CoA_red: Hydroxym 37.9 2.6E+02 0.0057 26.6 9.2 52 251-302 136-188 (373)
90 PRK14631 hypothetical protein; 37.7 2.5E+02 0.0053 23.6 9.5 70 254-323 23-111 (174)
91 cd00643 HMG-CoA_reductase_clas 37.0 3.8E+02 0.0082 25.8 10.1 73 238-313 150-223 (403)
92 PRK06737 acetolactate synthase 36.8 1.6E+02 0.0034 21.1 6.7 63 235-306 12-74 (76)
93 COG3978 Acetolactate synthase 36.7 1.6E+02 0.0036 21.3 6.7 67 232-308 10-76 (86)
94 PF02038 ATP1G1_PLM_MAT8: ATP1 36.3 59 0.0013 21.3 3.2 30 92-122 5-34 (50)
95 KOG1482 Zn2+ transporter [Inor 35.9 1.2E+02 0.0026 28.7 6.4 68 60-133 224-291 (379)
96 PF01566 Nramp: Natural resist 35.8 3.7E+02 0.0079 25.1 17.1 18 97-114 112-129 (358)
97 PF00873 ACR_tran: AcrB/AcrD/A 35.5 59 0.0013 35.3 5.1 70 237-308 635-708 (1021)
98 PRK02220 4-oxalocrotonate taut 35.5 1E+02 0.0022 20.3 4.6 41 272-312 4-46 (61)
99 TIGR00915 2A0602 The (Largely 34.1 3.6E+02 0.0078 29.5 10.8 65 235-300 54-119 (1044)
100 KOG1483 Zn2+ transporter ZNT1 33.7 2.9E+02 0.0064 26.4 8.6 63 166-232 32-106 (404)
101 COG2177 FtsX Cell division pro 33.6 3.7E+02 0.008 24.7 9.3 94 205-306 28-150 (297)
102 PRK11179 DNA-binding transcrip 33.3 2E+02 0.0043 23.2 6.9 62 236-310 80-142 (153)
103 cd04925 ACT_ACR_2 ACT domain-c 33.2 1.7E+02 0.0036 20.4 8.5 59 235-296 10-72 (74)
104 PF04972 BON: BON domain; Int 32.8 26 0.00057 23.5 1.3 29 229-258 30-58 (64)
105 PRK05783 hypothetical protein; 32.6 2E+02 0.0043 21.0 7.9 62 240-311 21-83 (84)
106 PRK10503 multidrug efflux syst 32.5 5E+02 0.011 28.4 11.5 65 235-300 65-129 (1040)
107 PF00403 HMA: Heavy-metal-asso 32.2 59 0.0013 21.5 3.0 25 286-310 10-34 (62)
108 TIGR03319 YmdA_YtgF conserved 31.8 1.7E+02 0.0036 29.2 7.2 61 241-308 441-504 (514)
109 PRK09977 putative Mg(2+) trans 31.3 3.5E+02 0.0077 23.5 11.7 61 237-307 154-214 (215)
110 PRK14636 hypothetical protein; 31.1 3.2E+02 0.007 23.0 9.4 82 238-322 7-91 (176)
111 TIGR00268 conserved hypothetic 31.0 1.5E+02 0.0033 26.2 6.3 54 254-313 197-250 (252)
112 COG4669 EscJ Type III secretor 30.9 98 0.0021 27.4 4.7 25 287-311 109-133 (246)
113 COG0841 AcrB Cation/multidrug 30.8 5.1E+02 0.011 28.3 11.0 63 235-300 55-119 (1009)
114 PRK00745 4-oxalocrotonate taut 30.5 1.4E+02 0.0031 19.7 4.7 41 272-312 4-46 (62)
115 MTH00140 COX2 cytochrome c oxi 29.7 3.1E+02 0.0068 23.9 7.9 30 92-121 52-81 (228)
116 PRK09579 multidrug efflux prot 29.4 5.3E+02 0.012 28.1 11.1 65 235-301 56-121 (1017)
117 COG4331 Predicted membrane pro 29.4 3.1E+02 0.0067 22.3 6.9 47 38-87 111-157 (167)
118 TIGR01008 rpsC_E_A ribosomal p 29.1 1.8E+02 0.004 24.9 6.1 67 240-311 13-82 (195)
119 PRK00106 hypothetical protein; 28.9 1.5E+02 0.0031 29.8 6.2 61 240-308 461-525 (535)
120 PF01390 SEA: SEA domain; Int 28.8 1.6E+02 0.0035 21.8 5.3 44 254-298 51-95 (107)
121 PRK11169 leucine-responsive tr 28.7 2.7E+02 0.0058 22.8 7.0 62 235-309 86-148 (164)
122 PRK10334 mechanosensitive chan 28.3 4.6E+02 0.0099 23.8 10.1 76 237-313 200-281 (286)
123 PRK02289 4-oxalocrotonate taut 27.8 1.4E+02 0.0031 19.8 4.3 41 272-312 4-46 (60)
124 PRK10555 aminoglycoside/multid 27.7 4.7E+02 0.01 28.6 10.3 64 235-300 54-119 (1037)
125 PRK10597 DNA damage-inducible 27.3 2.5E+02 0.0054 20.4 5.6 39 270-308 3-43 (81)
126 PRK11895 ilvH acetolactate syn 27.2 3.3E+02 0.0071 22.5 7.1 64 235-307 12-75 (161)
127 PRK01964 4-oxalocrotonate taut 27.0 1.6E+02 0.0035 19.7 4.5 42 272-313 4-47 (64)
128 PRK10503 multidrug efflux syst 26.9 1.5E+02 0.0033 32.3 6.5 43 268-310 568-610 (1040)
129 PRK12704 phosphodiesterase; Pr 26.7 1.6E+02 0.0035 29.4 6.1 62 239-308 445-510 (520)
130 PF06072 Herpes_US9: Alphaherp 26.5 1.1E+02 0.0024 20.7 3.4 6 6-11 4-9 (60)
131 PRK09577 multidrug efflux prot 26.3 1.6E+02 0.0034 32.2 6.4 41 268-308 567-607 (1032)
132 PRK09579 multidrug efflux prot 26.3 1.4E+02 0.003 32.6 5.9 71 236-308 622-693 (1017)
133 cd00292 EF1B Elongation factor 26.3 2.7E+02 0.0058 20.5 6.5 65 237-308 17-83 (88)
134 TIGR00013 taut 4-oxalocrotonat 26.0 2E+02 0.0043 19.0 4.8 42 270-312 3-46 (63)
135 PF02426 MIase: Muconolactone 25.9 1.9E+02 0.004 21.5 4.9 28 268-295 3-30 (91)
136 TIGR00119 acolac_sm acetolacta 24.8 4E+02 0.0086 21.9 7.4 64 235-307 11-74 (157)
137 PF03755 YicC_N: YicC-like fam 24.6 1.1E+02 0.0024 25.1 3.9 45 266-313 27-71 (159)
138 cd04887 ACT_MalLac-Enz ACT_Mal 24.1 2.4E+02 0.0051 19.1 7.8 59 235-303 9-68 (74)
139 PRK11670 antiporter inner memb 23.9 3.3E+02 0.0071 25.8 7.4 45 265-312 46-90 (369)
140 PF04102 SlyX: SlyX; InterPro 23.8 83 0.0018 21.9 2.6 12 313-324 58-69 (69)
141 PF02700 PurS: Phosphoribosylf 23.7 2.8E+02 0.0062 19.9 9.0 63 238-310 17-79 (80)
142 TIGR02610 PHA_gran_rgn putativ 23.6 1.3E+02 0.0029 22.3 3.7 33 270-302 2-34 (91)
143 TIGR00915 2A0602 The (Largely 23.5 4E+02 0.0088 29.1 8.9 47 261-307 129-177 (1044)
144 PRK04435 hypothetical protein; 23.4 4E+02 0.0087 21.5 7.7 64 235-307 79-143 (147)
145 KOG3320 40S ribosomal protein 23.3 4.6E+02 0.0099 22.1 7.9 56 265-323 56-116 (192)
146 PF13740 ACT_6: ACT domain; PD 23.2 2.7E+02 0.0058 19.4 9.2 57 235-298 12-68 (76)
147 PF11964 SpoIIAA-like: SpoIIAA 23.2 1.2E+02 0.0026 22.5 3.6 38 272-310 3-40 (109)
148 KOG3415 Putative Rab5-interact 23.2 3.6E+02 0.0079 20.9 7.5 76 47-124 50-125 (129)
149 PF12984 DUF3868: Domain of un 23.1 1.6E+02 0.0036 22.7 4.4 28 251-278 27-54 (115)
150 cd04927 ACT_ACR-like_2 Second 22.8 2.8E+02 0.006 19.4 7.9 59 235-296 10-71 (76)
151 TIGR02155 PA_CoA_ligase phenyl 22.6 6E+02 0.013 24.0 9.2 70 240-311 331-404 (422)
152 PF04456 DUF503: Protein of un 22.5 2.4E+02 0.0051 20.9 4.9 35 269-303 4-38 (90)
153 PRK10555 aminoglycoside/multid 22.3 4.3E+02 0.0094 28.9 8.8 29 279-307 148-177 (1037)
154 PRK00701 manganese transport p 22.3 7.3E+02 0.016 24.1 16.8 22 96-117 163-184 (439)
155 PRK04406 hypothetical protein; 22.2 1E+02 0.0022 22.0 2.8 12 313-324 64-75 (75)
156 COG3696 Putative silver efflux 22.1 2.1E+02 0.0046 30.6 6.0 40 272-311 562-601 (1027)
157 PF04531 Phage_holin_1: Bacter 22.0 3.2E+02 0.0069 19.8 5.9 49 32-82 9-57 (84)
158 PF04246 RseC_MucC: Positive r 21.9 4E+02 0.0086 20.9 7.3 52 39-90 70-121 (135)
159 PF09685 Tic20: Tic20-like pro 21.7 3.4E+02 0.0073 20.1 8.5 25 72-96 80-104 (109)
160 PHA02568 J baseplate assembly 20.9 4.6E+02 0.01 24.1 7.5 49 232-282 179-229 (300)
161 PRK15127 multidrug efflux syst 20.8 9.4E+02 0.02 26.4 11.0 64 235-300 54-119 (1049)
162 COG0841 AcrB Cation/multidrug 20.7 5.1E+02 0.011 28.3 8.8 69 237-308 106-176 (1009)
163 PF01076 Mob_Pre: Plasmid reco 20.6 3E+02 0.0065 23.4 5.9 70 237-312 54-130 (196)
164 COG3965 Predicted Co/Zn/Cd cat 20.2 6.2E+02 0.013 23.0 7.7 25 200-224 120-144 (314)
165 TIGR00914 2A0601 heavy metal e 20.1 6.2E+02 0.013 27.7 9.5 64 235-300 58-122 (1051)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-56 Score=409.75 Aligned_cols=284 Identities=25% Similarity=0.427 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHH
Q 020595 28 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGIL 107 (324)
Q Consensus 28 ~~~~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l 107 (324)
..+..+|+.+++++.|+++++.|+++|+++||.||+|||+||++|+++++++++++++++||||++|||||+|+|+++++
T Consensus 7 ~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl 86 (304)
T COG0053 7 RLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASL 86 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHhHHHhhhhHH
Q 020595 108 VFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVI 183 (324)
Q Consensus 108 ~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~s~~l~a~~~~~~~D~~ 183 (324)
+.+++++++|++++++++.++++|.+. ....+++++++++.+++.++++|.+ |.+|+.+.+++.|+++|++
T Consensus 87 ~~~~~i~~~g~~i~~~a~~~~~~~~~~-----~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 87 IVSILIFAAGFEILLEAIKRLISPQPV-----EPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 999999999999999999999997773 4567889999999999999999974 5799999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEE
Q 020595 184 TNIIGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAY 262 (324)
Q Consensus 184 ~s~~~~i~~~~~~~~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~ 262 (324)
+| ++++.++++.++| +|+||+++++|+++|++++++++|++.+.|+|+.+|++..+++++.+.+ .+||.++|++|+|
T Consensus 162 ts-~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~-~~~V~~v~~lr~R 239 (304)
T COG0053 162 TS-LAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS-VPGVKGVHDLRTR 239 (304)
T ss_pred HH-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhc-CCcceeeecceee
Confidence 99 5677777788888 7999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCcceEEEEeecccCCCCc
Q 020595 263 TFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHRPE 318 (324)
Q Consensus 263 ~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v~~v~i~i~p~~~~~~~ 318 (324)
+.|+.+++++|+++||++|++|+|++++++++.+++ .|++.+++||+||......+
T Consensus 240 ~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~ 296 (304)
T COG0053 240 KSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE 296 (304)
T ss_pred eeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence 999999999999999999999999999999999986 55599999999998644433
No 2
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=4.2e-54 Score=394.49 Aligned_cols=276 Identities=18% Similarity=0.232 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHH
Q 020595 31 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 110 (324)
Q Consensus 31 ~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~ 110 (324)
..+|+.++++++|++++++|+++|+++||.||+|||+||+.|++++++++++.++++||||++|||||+|+|++++++++
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHhHHHhhhhHHHHH
Q 020595 111 SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNI 186 (324)
Q Consensus 111 ~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~s~~l~a~~~~~~~D~~~s~ 186 (324)
+++++++++++++|++++++|++. .....+++++++++++|.+++++.+ +.+|+++++++.|+++|+++|
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s- 161 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPM-----NDPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMN- 161 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999998773 2344556778888888988776654 568999999999999999999
Q ss_pred HHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeC
Q 020595 187 IGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG 265 (324)
Q Consensus 187 ~~~i~~~~~~~~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G 265 (324)
++++.+++..++| +|+||++++++++++++.+++++|++.+.|+|.+||++..++|++.+++ .|+|.++|++|+|+.|
T Consensus 162 ~~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~-~~~v~~v~~l~~~~~G 240 (299)
T PRK09509 162 GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSG 240 (299)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh-CCCCcCceeeeeEeeC
Confidence 5666777777777 6999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeeccc
Q 020595 266 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 313 (324)
Q Consensus 266 ~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 313 (324)
++.++++|+++|++++++|+|++++++|+.|++.++..+++||+||++
T Consensus 241 ~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 241 PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 999999999999999999999999999999985333457999999965
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=1e-52 Score=386.79 Aligned_cols=276 Identities=17% Similarity=0.223 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHH
Q 020595 33 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 112 (324)
Q Consensus 33 ~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~ 112 (324)
+|.+++++++|++++++|+++|+++||.||++||+||++|++++++++++.++++||||++|||||+|+|++++++++++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHhHHHhhhhHHHHHHHH
Q 020595 113 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA---FTNEIVKAYAQDHFFDVITNIIGL 189 (324)
Q Consensus 113 l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~---~~s~~l~a~~~~~~~D~~~s~~~~ 189 (324)
+++++++++++|+.++++|.+. ...++++++++++++|.+++++.++ .+|.+++++++|++.|+++|++++
T Consensus 98 l~~~~~~i~~eai~~l~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vl 171 (312)
T PRK03557 98 LVVITILIVWEAIERFRTPRPV------AGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAI 171 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCccc------cchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987652 2345666777888889888877654 468899999999999999996556
Q ss_pred HHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeE
Q 020595 190 VAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHY 268 (324)
Q Consensus 190 i~~~~~~~~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~ 268 (324)
+++.+..+++ +|+||++++++++++++.+++++|++.+.|+|.+|+++..+++++.+.+..|+|.++|++|+|+.|+++
T Consensus 172 v~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~ 251 (312)
T PRK03557 172 IAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEKP 251 (312)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCeE
Confidence 6665666666 689999999999999999999999999999999998888999988774448999999999999999999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCCCC
Q 020595 269 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 317 (324)
Q Consensus 269 ~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 317 (324)
++++|++++++. +.|++++++++.|++.+++.+++||+||+.++.+
T Consensus 252 ~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~ 297 (312)
T PRK03557 252 VMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGP 297 (312)
T ss_pred EEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCc
Confidence 999999999875 5689999999999876789999999999865443
No 4
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=352.11 Aligned_cols=274 Identities=15% Similarity=0.226 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHH
Q 020595 30 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 109 (324)
Q Consensus 30 ~~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~ 109 (324)
.+.+|.+++++.+|.+++++|+++|+++||+||+||++|+++|+++.++++++.++++||++++|||||+|+|.|+++++
T Consensus 18 ~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~n 97 (296)
T COG1230 18 PRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLN 97 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHhHHHhhhhHHHHHH
Q 020595 110 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF--TNEIVKAYAQDHFFDVITNII 187 (324)
Q Consensus 110 ~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~--~s~~l~a~~~~~~~D~~~s~~ 187 (324)
+++++++++++++|+++|+++|++. +...+++++++++++|.+..+..++. ++.++++...|.++|.++|+.
T Consensus 98 av~Li~~s~~I~~EAi~R~~~P~~i------~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~ 171 (296)
T COG1230 98 ALLLIVVSLLILWEAIQRLLAPPPI------HYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVG 171 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC------CccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999883 23578899999999999999888765 478999999999999999988
Q ss_pred HHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCC
Q 020595 188 GLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS 266 (324)
Q Consensus 188 ~~i~~~~~~~~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~ 266 (324)
+++++++..+++ .|+||+.+++++++++..+++++|++.++|++..|+..+.+++++.+.+ .|||.++||+++|+.++
T Consensus 172 vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~-~~~v~~vhdlHvWsi~~ 250 (296)
T COG1230 172 VIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLR-IPGVASVHDLHVWSITG 250 (296)
T ss_pred HHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhc-CCCccceeecccCCCCC
Confidence 888888888888 5999999999999999999999999999999999999999999999986 89999999999999976
Q ss_pred e-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeeccc
Q 020595 267 H-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 313 (324)
Q Consensus 267 ~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 313 (324)
. ...++|+++++..+- +++.+++++.+.+.+++.++|||+|+..
T Consensus 251 ~~~~~t~Hv~v~~~~~~---~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 251 GEHALTLHVVVDEVADA---DAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred CceeEEEEEEecCccch---HHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 5 889999999954433 3388899999988789999999999854
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=4.3e-49 Score=356.69 Aligned_cols=260 Identities=22% Similarity=0.382 Sum_probs=238.0
Q ss_pred HHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020595 46 LFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL 125 (324)
Q Consensus 46 ~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~si 125 (324)
++++|+++|+++||.+|++||+||+.|++++++++++.+.++||||++|||||+|+|+++++++++++++.+++++++|+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhh-h
Q 020595 126 RTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYID-D 200 (324)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~-~ 200 (324)
+++++|++. ....+++.++++++++|.+++++.++ .+|+++++++.|++.|+++++ +++.++....++ +
T Consensus 82 ~~l~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~-~vli~~~~~~~~~~ 155 (268)
T TIGR01297 82 ERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSV-GVLIGALLIYFGWH 155 (268)
T ss_pred HHHhCCCCc-----ccchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999987642 23456677888899999999888754 679999999999999999995 444554444454 7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCC-eEEEEEEEEcCCC
Q 020595 201 WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPAS 279 (324)
Q Consensus 201 ~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~-~~~v~~~i~v~~~ 279 (324)
|+||++++++++++++.+++++|++...|+|.+|+++..+++++.+++ .++|.++|++|+|+.|+ ++++++|+++|++
T Consensus 156 ~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~ 234 (268)
T TIGR01297 156 WADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILS-IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPD 234 (268)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhc-CCCcccceEeEEEEcCCCCEEEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999986 89999999999999999 8999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCCcceEEEEeecc
Q 020595 280 MPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYE 312 (324)
Q Consensus 280 ~t~~~~~~i~~~i~~~l~-~~~~v~~v~i~i~p~ 312 (324)
+|++|+|++.+++|+.++ ++|++.+++||+||+
T Consensus 235 ~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 235 LDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 999999999999999986 579999999999993
No 6
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=356.29 Aligned_cols=320 Identities=49% Similarity=0.754 Sum_probs=287.6
Q ss_pred CccccccchhhhhhcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHH
Q 020595 1 MLEGFNEMDALAERGFVPGMT-KEERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFIL 79 (324)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~ 79 (324)
++|++.|.+.++.+|..+.+. ++..+..++.++++.|+++++|+++++.|+++|+.+||.|++||++|++.|++++++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvl 160 (412)
T KOG1485|consen 81 LLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVL 160 (412)
T ss_pred HhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999887765 4444455667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-cccch-----hhHHHHHHHHHHH
Q 020595 80 WFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQF-NLTKE-----QEQWVVGIMLSVT 153 (324)
Q Consensus 80 l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~ 153 (324)
|+..+.++||++.+||+|++|+|+++.+.++.+|..+|+.++.+|+.++..|.... +.+.+ ...|.+++.+...
T Consensus 161 l~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~ 240 (412)
T KOG1485|consen 161 LFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAK 240 (412)
T ss_pred HHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHH
Confidence 99999999999999999999999999999999999999999999999998733221 11111 1225666677777
Q ss_pred HHHHHHHHHHHHh-cCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020595 154 LVKLLLVVYCRAF-TNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGR 232 (324)
Q Consensus 154 ~v~~~l~~~~~~~-~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~ 232 (324)
.+++.+++++++. +|..+++.++|+|.|+++++++++++.++.+++||+||+++++++.+++++|.+...+++.+|+|+
T Consensus 241 ~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 241 EVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGR 320 (412)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCC
Confidence 7888888888764 569999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecc
Q 020595 233 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 312 (324)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 312 (324)
+.|||..+++...+.++.+.+..++.++.+..|..++|++|+++|++++++++|++.+.+++.|+..|.+.++++|+|.+
T Consensus 321 ~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e 400 (412)
T KOG1485|consen 321 SAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYE 400 (412)
T ss_pred CCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCcc
Confidence 99999999999888876678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccc
Q 020595 313 YTHRPEHA 320 (324)
Q Consensus 313 ~~~~~~~~ 320 (324)
+.+++.|.
T Consensus 401 ~~hr~~~~ 408 (412)
T KOG1485|consen 401 FLHRPHHE 408 (412)
T ss_pred ccCCchHh
Confidence 99988875
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=1.4e-47 Score=349.49 Aligned_cols=273 Identities=28% Similarity=0.475 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHH
Q 020595 36 IRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 115 (324)
Q Consensus 36 ~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~ 115 (324)
+|+++++|++++++|+++|+++||.++++||+|++.|+++.++.+++.+.++||+|++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hc--CHHHHHhHHHhhhhHHHHHHHH
Q 020595 116 LGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FT--NEIVKAYAQDHFFDVITNIIGL 189 (324)
Q Consensus 116 ~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----~~--s~~l~a~~~~~~~D~~~s~~~~ 189 (324)
++++++++++++++++++. ....+.+.++++++++|.+++++.++ .+ |+.+++++.|++.|.+.++.++
T Consensus 81 ~~~~~~~~si~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEP-----SPPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSS-----STTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccc-----hhhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 9999999999999998652 22333444588888999998888765 55 9999999999999999995444
Q ss_pred HHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCC-
Q 020595 190 VAVLLANYID--DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS- 266 (324)
Q Consensus 190 i~~~~~~~~~--~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~- 266 (324)
++..+....+ +|+||++++++++++++.+++++|++...|+|.+|+++..+++++.+++ .|+|.+++++|+|+.|+
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~ 234 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES-VPGVIEVHDLRVWQVGRN 234 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-TSS-SEEEEEEEEEETT-
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-CCceEeccceEEEEecCC
Confidence 4444444443 3599999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHH-cCCCcceEEEEeecccC
Q 020595 267 HYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYT 314 (324)
Q Consensus 267 ~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~-~~~~v~~v~i~i~p~~~ 314 (324)
++++++|+++|++++++|+|++++++++.++ +++++.+++||+||+++
T Consensus 235 ~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 235 KYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 7999999999999999999999999999997 57899999999999864
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-35 Score=262.38 Aligned_cols=274 Identities=15% Similarity=0.199 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHH
Q 020595 32 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 111 (324)
Q Consensus 32 ~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~ 111 (324)
.+|.++++.++.+.+++.|++.|+..||+|+++||.|-++|..+-.+++++++.++||++++..|||+|+|.+++++..+
T Consensus 71 ~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~ 150 (379)
T KOG1482|consen 71 AERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVL 150 (379)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH------hc---------------CHH
Q 020595 112 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA------FT---------------NEI 170 (324)
Q Consensus 112 ~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~------~~---------------s~~ 170 (324)
.++.....++++|++|++++..+ .+...+++++.+++++|..+...+.. .+ +.+
T Consensus 151 ~IW~~tgvLV~~Ai~Rl~s~~~e-----v~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~n 225 (379)
T KOG1482|consen 151 LIWVVTGVLVYEAIQRLLSGDYE-----VNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLN 225 (379)
T ss_pred HHHHhhhhhHHHHHhhhhcCcee-----ecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchH
Confidence 99999999999999999999864 23455667777888888876554421 11 278
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHhhhh--h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 020595 171 VKAYAQDHFFDVITNIIGLVAVLLANYID--D-WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCW 247 (324)
Q Consensus 171 l~a~~~~~~~D~~~s~~~~i~~~~~~~~~--~-~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~ 247 (324)
+++...|.+.|.+.|. |++.+....++. | +.||+.+++.+.+.+.+-.+++|+....||+.+|..-+...+++.+.
T Consensus 226 vraAyiHVlGDliQSv-GV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~ 304 (379)
T KOG1482|consen 226 VRAAFVHVLGDLIQSV-GVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLL 304 (379)
T ss_pred HHHHHHHHHHHHHHHH-HHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHh
Confidence 9999999999999995 555554445554 3 89999999999999999999999999999999999999999999998
Q ss_pred hcCCCcccceeEEEEEeCC-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCC
Q 020595 248 NHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTH 315 (324)
Q Consensus 248 ~~~~~v~~v~~l~~~~~G~-~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~ 315 (324)
+ .+||..||++|+|.+.- +..+.+|+..+++ .+.+++.+++.+.+++.+++.++|+|+||+...
T Consensus 305 ~-iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~ 369 (379)
T KOG1482|consen 305 S-IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEE 369 (379)
T ss_pred h-hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcceEEEEEEecCCccc
Confidence 8 89999999999999984 5889999999976 566889999999999888999999999997654
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-35 Score=262.46 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHH
Q 020595 35 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMA 114 (324)
Q Consensus 35 ~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~ 114 (324)
.++.-++++++++++|++.|+.++|+||++|++|++.|+++.++++++.|.+++.+++++||||.|+|.++++++++++.
T Consensus 10 rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~ 89 (404)
T KOG1483|consen 10 RLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLT 89 (404)
T ss_pred ceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999978899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH------------------------------
Q 020595 115 TLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR------------------------------ 164 (324)
Q Consensus 115 ~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~------------------------------ 164 (324)
...+.++.|+++|++.|... ..+...+.+++++++.|.+-+....
T Consensus 90 alc~~I~~EA~~R~I~p~~i-----~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~ 164 (404)
T KOG1483|consen 90 ALCVSILIEAIERIIEPHHI-----ENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLH 164 (404)
T ss_pred HHHHHHHHHHHHhhcCCccc-----cCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCc
Confidence 99999999999999998873 4445556667777777664322210
Q ss_pred ----------H------------------------------------------------hcCHHHHHhHHHhhhhHHHHH
Q 020595 165 ----------A------------------------------------------------FTNEIVKAYAQDHFFDVITNI 186 (324)
Q Consensus 165 ----------~------------------------------------------------~~s~~l~a~~~~~~~D~~~s~ 186 (324)
+ -++.+....+.|.+.|++.++
T Consensus 165 ~~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I 244 (404)
T KOG1483|consen 165 SHAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSI 244 (404)
T ss_pred hhccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccce
Confidence 0 011233455677888999986
Q ss_pred HHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCCcccceeEEEE
Q 020595 187 IGLVAVLLANYID----DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAY 262 (324)
Q Consensus 187 ~~~i~~~~~~~~~----~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~ 262 (324)
++++++++.++++ .|+||+.+++++++++.+++++.|++..+|++..|...+.+++++.+.+ +|||.+|||+++|
T Consensus 245 ~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~-~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 245 IVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT-VPGVISVHDLHVW 323 (404)
T ss_pred EEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc-Ccceeeeeeeeee
Confidence 6666666655554 4999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred Ee-CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCCCC
Q 020595 263 TF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 317 (324)
Q Consensus 263 ~~-G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 317 (324)
++ |.++..++||.++.. .+.-++++++|+.+.++ ||..+|||.|.+...++
T Consensus 324 qL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~~~~~ 375 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAPTCRK 375 (404)
T ss_pred eeccceEEEEEEEEecCc---HHHHHHHHHHHHHHHhc-CCcceeeccchhhhccc
Confidence 99 567999999999742 34458999999999884 99999999998763333
No 10
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-33 Score=246.16 Aligned_cols=280 Identities=14% Similarity=0.182 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhh
Q 020595 23 EERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQ 102 (324)
Q Consensus 23 ~~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E 102 (324)
..|.....+++|-....+++|+.++.+++..+..+||..|++|++|++.|+.+..+.+++..++++|++.+||||++|+|
T Consensus 24 ~~r~il~~~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~e 103 (354)
T KOG1484|consen 24 WFRQILSDKDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIE 103 (354)
T ss_pred HHHhhccCcchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHH
Confidence 33444555667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 020595 103 PLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----------------- 165 (324)
Q Consensus 103 ~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----------------- 165 (324)
.++++.+++++.+.+++++.|+++|+++|++. ..+-..++...+.++|++-....+.
T Consensus 104 vLagF~n~vflvl~a~fi~~Es~eRl~~ppei------~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h 177 (354)
T KOG1484|consen 104 VLAGFVNGVFLVLIAFFIFSESVERLFDPPEI------HTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGH 177 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchhc------CCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccc
Confidence 99999999999999999999999999999652 2233345566667777653332211
Q ss_pred ------------------------hcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHH
Q 020595 166 ------------------------FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRTWSM 220 (324)
Q Consensus 166 ------------------------~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~~-~~D~i~si~i~~~i~~~~~~ 220 (324)
..+..+.....|.++|.+.|+..+++..+..++|| +.||+.+++|++.++.+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~P 257 (354)
T KOG1484|consen 178 LALLFHSLLGVWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLP 257 (354)
T ss_pred hhccccccccccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 01123457788999999999766666777777885 99999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHh--cCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q 020595 221 TVLENVNSLVGRSAAPEYLQKLTYLCWN--HHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLE 297 (324)
Q Consensus 221 ~~~~s~~~Ll~~~~~~~~~~~i~~~l~~--~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~ 297 (324)
++|++...|++++| |+..+.+.+.+++ ..+||.++.+-|.|+.+++ +..++|+.|..+. +.+.+.+++.+.++
T Consensus 258 L~k~s~~iLLq~tP-p~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~ 333 (354)
T KOG1484|consen 258 LLKYSGKILLQRTP-PHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLE 333 (354)
T ss_pred HHHHHHHHHHhcCC-hhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHH
Confidence 99999999999876 4444444443333 2689999999999999987 8899999998874 34778888888888
Q ss_pred cCCCcceEEEEeeccc
Q 020595 298 LLPEIERAFVHLDYEY 313 (324)
Q Consensus 298 ~~~~v~~v~i~i~p~~ 313 (324)
.. +|.+.+||+|.+.
T Consensus 334 ~~-gV~~ltvQv~~~~ 348 (354)
T KOG1484|consen 334 DA-GVKDLTVQVEKEN 348 (354)
T ss_pred hc-ceeEEEEEEeccc
Confidence 64 7999999988754
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=216.55 Aligned_cols=277 Identities=17% Similarity=0.220 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCccchhhHHHH
Q 020595 28 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ-TPNPYQYPIGKKRMQPLGI 106 (324)
Q Consensus 28 ~~~~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~-r~~~~~~p~G~~r~E~l~~ 106 (324)
....+++.+..|++.+++++.++++.|+++||.++.-||++|+.|+....++++..|+.. +|.|.|||||++.+|++.-
T Consensus 14 ~~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL 93 (314)
T COG3965 14 DSSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVL 93 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHh
Confidence 344677889999999999999999999999999999999999999999999999999887 6777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHhHHHhhhhH
Q 020595 107 LVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDV 182 (324)
Q Consensus 107 l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~ 182 (324)
.+++.+++..+.|.++.|+..+++++++. .+.+++.++++++.+|...+++.|| .+|+.+.++...|.+|.
T Consensus 94 ~ing~ll~ll~lyAlinAl~~l~dGGR~v-----~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst 168 (314)
T COG3965 94 AINGTLLALLCLYALINALGSLLDGGREV-----EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMST 168 (314)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999999863 4567888999999999998888755 67999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--C
Q 020595 183 ITNIIGLVAVLLANY-ID--------DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHH--K 251 (324)
Q Consensus 183 ~~s~~~~i~~~~~~~-~~--------~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~~~~--~ 251 (324)
+.|. ++..+++..+ .. +|+||..-.+++++++..+++.+|.+.++.+..+|+ |..++++....+.. -
T Consensus 169 ~lS~-al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~ 246 (314)
T COG3965 169 CLSA-ALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKY 246 (314)
T ss_pred HHHH-HHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHh
Confidence 9995 5545444433 21 599999999999999999999999999999999876 77777664443311 1
Q ss_pred CcccceeEEEEEeCCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHHcCCCcceEEEEeecc
Q 020595 252 SIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKLELLPEIERAFVHLDYE 312 (324)
Q Consensus 252 ~v~~v~~l~~~~~G~~~~v~~~i~v~~~~---t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 312 (324)
+.. -+..++.+.|+..++++|..+|++. .+++.|+|++++.+.|.+.|.-..+|+.+..+
T Consensus 247 ~f~-~~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D 309 (314)
T COG3965 247 GFP-SYHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRD 309 (314)
T ss_pred cCc-hHHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEecc
Confidence 211 2344577889999999999997764 67999999999999998766656677766543
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.88 E-value=5.4e-22 Score=177.59 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHH
Q 020595 32 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 111 (324)
Q Consensus 32 ~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~ 111 (324)
..|++.+++++|.+-+.+|+.+++.+||.+++|+++||++|..+.++..+|++.+.+.||..|||||.+..++.+|+.++
T Consensus 205 s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgv 284 (503)
T KOG2802|consen 205 SGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGV 284 (503)
T ss_pred CCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHH--HHH--H---------------HhcCHHH
Q 020595 112 VMATLGL-QIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLV--VYC--R---------------AFTNEIV 171 (324)
Q Consensus 112 ~l~~~~~-~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~--~~~--~---------------~~~s~~l 171 (324)
.|+.+|. ..++.+++.+++|+|. ++..|+..+..-+++...... .+. + +..+|..
T Consensus 285 GIfc~G~GlSiyhGv~gLlhpePi-----~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~ 359 (503)
T KOG2802|consen 285 GIFCMGCGLSIYHGVMGLLHPEPI-----ESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPST 359 (503)
T ss_pred ceeeecccchhhhccccccCCCCC-----cchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcc
Confidence 8766554 5689999999999994 455666666555554432211 111 1 1223333
Q ss_pred HHhHHHhhhhHHHH--HHHHHHHH-HHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 020595 172 KAYAQDHFFDVITN--IIGLVAVL-LANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCW 247 (324)
Q Consensus 172 ~a~~~~~~~D~~~s--~~~~i~~~-~~~~~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~l~ 247 (324)
.+... .|...- ++...+++ +..++| |..|++++++|+.++...
T Consensus 360 nvVl~---EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV------------------------------ 406 (503)
T KOG2802|consen 360 NVVLL---EDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV------------------------------ 406 (503)
T ss_pred eEEEe---cchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH------------------------------
Confidence 33222 233221 11112222 223455 899999999999866544
Q ss_pred hcCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHH----------------------HH--------H-------HHH
Q 020595 248 NHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQ----------------------EA--------H-------DIG 289 (324)
Q Consensus 248 ~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~----------------------~~--------~-------~i~ 289 (324)
+.+++|++..-+|+. ......+.+|+.+-.+ +. + .-.
T Consensus 407 -----e~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~kqd~akml~e~~~~~~~e~le~fml~~GEnivd~lG~Ev 481 (503)
T KOG2802|consen 407 -----ENDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLEKQDFAKMLQEIQEVKTPEELETFMLKHGENIVDTLGAEV 481 (503)
T ss_pred -----HHhhhhccceeeccceeEEEEEeccCchhhHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcchHHHHHhhhHH
Confidence 123678888888865 6678888888765321 00 0 124
Q ss_pred HHHHHHHH-cCCCcceEEEEe
Q 020595 290 ESLQEKLE-LLPEIERAFVHL 309 (324)
Q Consensus 290 ~~i~~~l~-~~~~v~~v~i~i 309 (324)
+++|+.|+ ..|+|.||.+++
T Consensus 482 DRlEkel~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 482 DRLEKELKKRNPEIRHVDLEI 502 (503)
T ss_pred HHHHHHHHHhCCCceeeeeec
Confidence 67888887 589999988865
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.2e-06 Score=80.47 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHH
Q 020595 31 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 110 (324)
Q Consensus 31 ~~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~ 110 (324)
..-.+.+++++.+..+...+.-.|..+||.+|.||++|+.+|+++++.+++++-... +|+..++++++++++
T Consensus 118 ~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~ 189 (304)
T COG0053 118 LALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLIS 189 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHH
Confidence 344567788999999999999999999999999999999999999999999987322 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCc
Q 020595 111 SVMATLGLQIILESLRTLVSNED 133 (324)
Q Consensus 111 ~~l~~~~~~i~~~si~~l~~~~~ 133 (324)
+.++..++.++++++..|++...
T Consensus 190 ~~Il~~~~~~~~~s~~~L~d~~~ 212 (304)
T COG0053 190 LYILKTGFRLFKESVNELMDAAL 212 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999555
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.28 E-value=1e-05 Score=74.34 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHH
Q 020595 35 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMA 114 (324)
Q Consensus 35 ~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~ 114 (324)
...+++++|.++...+...+..++|.++.+|+.|+..|+++++.+++++..+. +|+..+|++++++++++++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il 191 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYIL 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHH
Confidence 45567778888787888888889999999999999999999999888887763 4888999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 020595 115 TLGLQIILESLRTLVSNED 133 (324)
Q Consensus 115 ~~~~~i~~~si~~l~~~~~ 133 (324)
..++.++++++..|++..+
T Consensus 192 ~~~~~i~~~~~~~Ll~~~~ 210 (299)
T PRK09509 192 YSALRMGYEAVQSLLDRAL 210 (299)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 9999999999999998654
No 15
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.28 E-value=7e-06 Score=74.13 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHH
Q 020595 34 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 113 (324)
Q Consensus 34 ~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l 113 (324)
....+++++|.+++..+...|...+|.++.+|+.|++.|+++++.++++...+. ||+.++|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 456678888999999999889999999999999999999999999999888775 568899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 020595 114 ATLGLQIILESLRTLVSNED 133 (324)
Q Consensus 114 ~~~~~~i~~~si~~l~~~~~ 133 (324)
+..++.+++++...+++..+
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998775
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.56 E-value=0.00074 Score=62.48 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 020595 38 ISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLG 117 (324)
Q Consensus 38 ~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 117 (324)
.++++|.+...... -+-..+|.++.+|++|...|+++++.++++...... +|+..++++++++++++++..+
T Consensus 130 ~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~ 201 (312)
T PRK03557 130 AGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSA 201 (312)
T ss_pred HHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHH
Confidence 34445544333222 234468899999999999999999988887765542 2555699999999999999999
Q ss_pred HHHHHHHHHHhhcCCc
Q 020595 118 LQIILESLRTLVSNED 133 (324)
Q Consensus 118 ~~i~~~si~~l~~~~~ 133 (324)
+.++++++..+++..+
T Consensus 202 ~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 202 WRLLKESVNELLEGAP 217 (312)
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999999998765
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.015 Score=54.72 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 020595 37 RISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 116 (324)
Q Consensus 37 ~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 116 (324)
.+++......+..-...+..++|..+.|-|+|-..|++++.++|++...+.. ++.-++++++++++..++..
T Consensus 234 ~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~--------~~~~lDP~gailVS~~ii~t 305 (412)
T KOG1485|consen 234 AIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYY--------YNYWLDPIGAILVSTYIIYT 305 (412)
T ss_pred eehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------hhhcccchhhhhhheehhhh
Confidence 3445555666666667788899999999999999999999999999988873 45779999999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 020595 117 GLQIILESLRTLVSNED 133 (324)
Q Consensus 117 ~~~i~~~si~~l~~~~~ 133 (324)
+.....+++..|++...
T Consensus 306 ~~~t~~~~i~~Lvg~~a 322 (412)
T KOG1485|consen 306 GGRTGLENIKELVGRSA 322 (412)
T ss_pred hhHHHHHHHHHHhCCCC
Confidence 99999999999997643
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=94.98 E-value=0.043 Score=49.74 Aligned_cols=91 Identities=23% Similarity=0.230 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-hhhHHHHHHHHHH
Q 020595 36 IRISNVANMVLFAAKVYASVKSG--SLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKK-RMQPLGILVFASV 112 (324)
Q Consensus 36 ~~~s~~~~~~~~i~~~~~g~~~~--S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~-r~E~l~~l~~~~~ 112 (324)
..+++++|..+.....-.+-..+ |.++.+++.|+..|.+.++.++++.....-. ++. -+|++++++++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 45666777777776666666667 9999999999999999998888877665543 233 3899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 020595 113 MATLGLQIILESLRTLVSNED 133 (324)
Q Consensus 113 l~~~~~~i~~~si~~l~~~~~ 133 (324)
++..++.++++++..+++..+
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~ 202 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASP 202 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SH
T ss_pred Hhhhhhhchhhhhcccccccc
Confidence 999999999999999998765
No 19
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=93.10 E-value=1.3 Score=33.31 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHHcCCCcceEEEEeecc
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLELLPEIERAFVHLDYE 312 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t--~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 312 (324)
.+|++.+.+ .|++..-..+.+.+-|..-.+.+.++..+..+ ..+..++++++++.|++.-++ .+.|++-|.
T Consensus 7 ~~Ie~vl~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv-~~~V~lv~~ 79 (96)
T PF14535_consen 7 SQIEEVLRE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV-RPEVELVPP 79 (96)
T ss_dssp HHHHHHHCT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred HHHHHHHHh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc-eEEEEEECC
Confidence 567777877 79988778888888888777888999988764 468889999999999865576 456776553
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=92.36 E-value=2.9 Score=38.27 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhh-------hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 020595 163 CRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANY-------ID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSA 234 (324)
Q Consensus 163 ~~~~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~-------~~-~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~ 234 (324)
.-..+|..+.+++.|.++|++.-+++.++.-+... +| +.+..+++++=+++++..+.-+++|++..+....+
T Consensus 42 g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~ 121 (296)
T COG1230 42 GLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPP 121 (296)
T ss_pred HHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999875433333333222 24 47899999999999999999999999999986443
No 21
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=90.09 E-value=4.2 Score=37.57 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhh-------h-hhhhHHHHHHHHHHHHHH
Q 020595 146 VGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-------D-DWMDPVGAIILALYTIRT 217 (324)
Q Consensus 146 ~~~~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~-------~-~~~D~i~si~i~~~i~~~ 217 (324)
....++.....+....|....+|..+.+++.|...|....++++.++.+..+- | ..+...++..=+++....
T Consensus 38 f~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~ 117 (354)
T KOG1484|consen 38 FLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLI 117 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 34555555656666677777899999999999999998887777777776652 3 367788888889999999
Q ss_pred HHHHHHHHHHHhhc
Q 020595 218 WSMTVLENVNSLVG 231 (324)
Q Consensus 218 ~~~~~~~s~~~Ll~ 231 (324)
++-+++|++..|++
T Consensus 118 a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 118 AFFIFSESVERLFD 131 (354)
T ss_pred HHHHhHHHHHHhcC
Confidence 99999999999987
No 22
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=89.88 E-value=5.3 Score=30.35 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=37.2
Q ss_pred EEEEEe-CCeEEEEEEEEcCCCCCH-HHHHHHHHHHHHHHHcC--CCcceEEEEee
Q 020595 259 VRAYTF-GSHYFVEVDIVLPASMPL-QEAHDIGESLQEKLELL--PEIERAFVHLD 310 (324)
Q Consensus 259 l~~~~~-G~~~~v~~~i~v~~~~t~-~~~~~i~~~i~~~l~~~--~~v~~v~i~i~ 310 (324)
+++... +..+.+++++.+....++ +-+.++.+++++.++++ ..+.+|.|+++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 566655 677999999999877665 45667777888888653 34666777765
No 23
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=88.74 E-value=3.6 Score=34.01 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCcceEEEEeecc
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYE 312 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v~~v~i~i~p~ 312 (324)
+.-++|.+.+. .+.+|.+..+.-.|...+|-+.+.- +..-...+++..++.+.+++ .|.+.+|.|.-+|+
T Consensus 54 ~~A~~Ia~~v~----~v~~V~dA~vvVtg~~A~Vgv~~~~--~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 54 DVADEIASEAA----KVKGVKDATVVITGNYAYVGVDLTN--GLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred HHHHHHHHHHh----cCCCCceEEEEEECCEEEEEEEcCC--CcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 34444555544 4455677788888999887775543 33345678899999999997 99999999998886
No 24
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=87.42 E-value=17 Score=30.82 Aligned_cols=105 Identities=9% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHhHHHhhhhHHHHHHHHHH
Q 020595 113 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF-TNEIVKAYAQDHFFDVITNIIGLVA 191 (324)
Q Consensus 113 l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~-~s~~l~a~~~~~~~D~~~s~~~~i~ 191 (324)
+++.|+..+..++..++.... +.+ .....+..++++......++.|..|. .+...+.-.+....-...+.+.=++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA-~~~---GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNA-QVY---GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-cch---hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 445566666777777876553 211 12223344555555566666665442 2222332222222222222111111
Q ss_pred HHHH-hhh----hhhhhHHHHHHHHHHHHHHHHHH
Q 020595 192 VLLA-NYI----DDWMDPVGAIILALYTIRTWSMT 221 (324)
Q Consensus 192 ~~~~-~~~----~~~~D~i~si~i~~~i~~~~~~~ 221 (324)
..+. .+. ++.+||+.-.+++..++..=+.+
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfyl 212 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILALRFYL 212 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHH
Confidence 1111 122 36899999999998877655543
No 25
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=87.15 E-value=9.8 Score=27.88 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHHHHHHHHH
Q 020595 176 QDHFFDVITNIIGLVAVLLANYIDDWMDPV---GAIILALYTIRTWSMTV 222 (324)
Q Consensus 176 ~~~~~D~~~s~~~~i~~~~~~~~~~~~D~i---~si~i~~~i~~~~~~~~ 222 (324)
.|...|.+-+..+++.+.+....+|.+||+ +-++.+...++-+++.+
T Consensus 32 v~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 32 VSRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888999998888888999999 44555555555555544
No 26
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=86.32 E-value=5.2 Score=33.50 Aligned_cols=70 Identities=11% Similarity=0.212 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCcceEEEEeecc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYE 312 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v~~v~i~i~p~ 312 (324)
..+..++|.+.+.+ .+| |.+..+.-.|...+|-+.+.-+ . ....++.++|++.+++ .|++.+|.|.-+|.
T Consensus 73 ~~~~a~~i~~~v~~-~~~---V~~A~vvv~~~~a~Vav~~~~~-~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 73 RQQLADRIANRVKK-VPG---VEDATVVVTDDNAYVAVDLDFN-R---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHHHhc-CCC---ceEEEEEEECCEEEEEEEeccc-c---cchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 44566667776665 555 5677888889999999888833 2 3447899999999985 78989999988775
No 27
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=81.53 E-value=16 Score=30.77 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhc-CCCc-------ccceeEEEEEe-CC--eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 235 APEYLQKLTYLCWNH-HKSI-------RHIDTVRAYTF-GS--HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~-~~~v-------~~v~~l~~~~~-G~--~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
++...++|.+.+++. .|+. --|+++.+... +. ++.+.+.+..+.. .....+++.++++|++.+++.
T Consensus 71 ~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c---~~~~~L~~dV~~aL~~l~gV~ 147 (174)
T TIGR03406 71 GEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGC---GMGPVLVEDVEDKVLAVPNVD 147 (174)
T ss_pred ccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCC---cHHHHHHHHHHHHHHhCCCce
Confidence 344557788777662 2332 12345555441 12 4556666554432 345789999999999889999
Q ss_pred eEEEEeeccc
Q 020595 304 RAFVHLDYEY 313 (324)
Q Consensus 304 ~v~i~i~p~~ 313 (324)
++.|++..++
T Consensus 148 ~V~V~l~~dp 157 (174)
T TIGR03406 148 EVEVELVFDP 157 (174)
T ss_pred eEEEEEEecC
Confidence 8888876554
No 28
>PRK14637 hypothetical protein; Provisional
Probab=81.20 E-value=16 Score=29.99 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCCCC
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 317 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 317 (324)
..+.+...+++ .| ..+.++...+.|+...+.+.|.-++.+++++..++.+.+...|....+..+-+.++..-..++|
T Consensus 10 ~~~~v~p~~~~--~g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 10 YFSECEPVVEG--LG-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred HHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 34555555654 34 4678889888888888888887777899999999999999988642223445677765556666
Q ss_pred ccccCC
Q 020595 318 EHAQAH 323 (324)
Q Consensus 318 ~~~~~~ 323 (324)
=.++.|
T Consensus 87 L~~~~~ 92 (151)
T PRK14637 87 IKNAAE 92 (151)
T ss_pred CCCHHH
Confidence 555444
No 29
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=80.69 E-value=30 Score=30.58 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 020595 144 WVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 223 (324)
Q Consensus 144 ~~~~~~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~~~~D~i~si~i~~~i~~~~~~~~~ 223 (324)
.+.+...++.+.+.+=-+..|+.+....-..-.++++|..+ .|+.-+++.+..+..-.+.+-++-.++++..++|+.|
T Consensus 37 ~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs--FgVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLAr 114 (234)
T COG1183 37 AALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS--FGVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLAR 114 (234)
T ss_pred HHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH--hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777887776666888999999876 5777777776655222778888888899999999998
Q ss_pred HHHHH
Q 020595 224 ENVNS 228 (324)
Q Consensus 224 ~s~~~ 228 (324)
-|...
T Consensus 115 FN~~~ 119 (234)
T COG1183 115 FNVKT 119 (234)
T ss_pred ccCcc
Confidence 88664
No 30
>PRK14635 hypothetical protein; Provisional
Probab=78.64 E-value=27 Score=28.92 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEc----CCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 233 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v----~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
+|+.+..+.+.+-+.+ .| ..+.++.+.+.|+...+.+.|.- ++..++++..++.+.+...|........-+.+
T Consensus 2 ~~~~~~i~~l~~~~~~--~g-~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LE 78 (162)
T PRK14635 2 TVSEEEISEILDRVLA--LP-VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFTLK 78 (162)
T ss_pred CCcHHHHHHHHHHHHC--CC-CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEE
Confidence 3555555554333333 24 56788888888888777777764 24599999999999999999642223456666
Q ss_pred eecccCCCCccccCC
Q 020595 309 LDYEYTHRPEHAQAH 323 (324)
Q Consensus 309 i~p~~~~~~~~~~~~ 323 (324)
+-.-..++|=..+.|
T Consensus 79 VSSPGldRpL~~~~~ 93 (162)
T PRK14635 79 VSSAGAERKLRLPED 93 (162)
T ss_pred EcCCCCCCcCCCHHH
Confidence 655455555444444
No 31
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.96 E-value=17 Score=29.91 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=54.2
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAHY 324 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~~ 324 (324)
.++.++...+.|+...+.+.+.=+..+|+++..++.+.+...|.....+. .-+.++..-..++|=.+..||
T Consensus 23 ~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldRpL~~~~~f 94 (153)
T COG0779 23 FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDRPLKTAEHF 94 (153)
T ss_pred cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCCCcCCHHHH
Confidence 56778888888988888888888889999999999999999997322333 456777665567776666554
No 32
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=75.61 E-value=1.3e+02 Score=32.77 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=38.3
Q ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 267 HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 267 ~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
.-.+.++++.+++.++++.+++.+++++.|++.|++.++...+-
T Consensus 558 ~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG 601 (1021)
T PF00873_consen 558 RGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVG 601 (1021)
T ss_dssp TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEES
T ss_pred CCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEec
Confidence 35678999999999999999999999999999999998887764
No 33
>PRK14647 hypothetical protein; Provisional
Probab=73.66 E-value=44 Score=27.58 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=49.4
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+...|+++..++.+.+...|.....+. .-+.++..-..++|=.++.|
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~~~~~ 93 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKKEAD 93 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCCCHHH
Confidence 45778888888887778888877788999999999999999996422222 23555554445555544444
No 34
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=73.23 E-value=22 Score=27.55 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=39.2
Q ss_pred HHHHhhcCCCCH-----HHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEc
Q 020595 225 NVNSLVGRSAAP-----EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL 276 (324)
Q Consensus 225 s~~~Ll~~~~~~-----~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v 276 (324)
.+..|++...++ +....|++++.. .|.+.+|.++.+.+.|+.+.+++.|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~-d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQ-DPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhc-CCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 355677774333 455667788876 799999999999999999999888864
No 35
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=71.84 E-value=39 Score=25.18 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=33.6
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCCC
Q 020595 266 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHR 316 (324)
Q Consensus 266 ~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~ 316 (324)
+.+.+.+.+..+.. .....+.+++++.+.+.+++..+.|.++....-.
T Consensus 37 ~~v~i~l~l~~p~~---~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~ 84 (99)
T TIGR02945 37 GHVDIQMTLTAPNC---PVAGSMPGEVENAVRAVPGVGSVTVELVWDPPWT 84 (99)
T ss_pred CeEEEEEEECCCCC---ChHHHHHHHHHHHHHhCCCCceEEEEEEeeCCCC
Confidence 45666666655533 2446788999999998899988888887554433
No 36
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=71.48 E-value=33 Score=36.22 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEe-----CCeEEEEEEEEcCC--CCCH-HHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTF-----GSHYFVEVDIVLPA--SMPL-QEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~-----G~~~~v~~~i~v~~--~~t~-~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
+...++++.+++ .|+|++|-.=--+-- ++-.+.+-.|++.| ++.. +.-+++.+++++.+++.||+...+.+
T Consensus 577 ~m~~~~e~~ik~-~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tq 655 (1027)
T COG3696 577 RMLQAIERAIKK-FPEVERVFGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQ 655 (1027)
T ss_pred HHHHHHHHHHhc-CcchheeeeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCccccccc
Confidence 455567777775 788776632111111 12255677777754 3442 23678999999999999998655443
No 37
>PRK14638 hypothetical protein; Provisional
Probab=70.24 E-value=57 Score=26.68 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=48.7
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCC-CCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~-~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+.. +++++..++.+.+...|.....+ ..=+.++..-..++|=.++.|
T Consensus 23 ~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~ 94 (150)
T PRK14638 23 LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKD 94 (150)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCCCCHHH
Confidence 45778888888888888888876655 99999999999999999632222 223566655455555554444
No 38
>PRK14640 hypothetical protein; Provisional
Probab=69.77 E-value=57 Score=26.70 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=49.0
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+..+|+++..++.+.+...|.....+. .=+.++..-..++|=.++.|
T Consensus 21 ~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~ 91 (152)
T PRK14640 21 FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQ 91 (152)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHH
Confidence 45788888888887778888877777999999999999999996422222 23555554455555444443
No 39
>PRK14634 hypothetical protein; Provisional
Probab=68.20 E-value=58 Score=26.81 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=48.8
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~--~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+.. +++++..++.+.+...|.....+. .=+.++..-..++|=-++.|
T Consensus 22 ~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~ 94 (155)
T PRK14634 22 FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIGDQLSSDRD 94 (155)
T ss_pred CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHH
Confidence 45788888888888888888887666 999999999999999996422222 23455554445555444433
No 40
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=66.74 E-value=70 Score=26.16 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCC
Q 020595 239 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRP 317 (324)
Q Consensus 239 ~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~ 317 (324)
.+.+...+.+ -| ..+.++...+.|+...+.+.|.-+...++++..++.+.+...|.....+ ..-+.++-.-..++|
T Consensus 10 ~~~~~~~~~~--~g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~Rp 86 (154)
T PRK00092 10 TELIEPVVEA--LG-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRP 86 (154)
T ss_pred HHHHHHHHHH--CC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCc
Confidence 3334444443 24 4588889888888878888887777899999999999999999632222 234556554444444
Q ss_pred cccc
Q 020595 318 EHAQ 321 (324)
Q Consensus 318 ~~~~ 321 (324)
=-.+
T Consensus 87 L~~~ 90 (154)
T PRK00092 87 LKKA 90 (154)
T ss_pred CCCH
Confidence 4333
No 41
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=65.92 E-value=14 Score=25.70 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=26.1
Q ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 265 GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 265 G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
|++..+++.+..+ ..+ ....+++++++.|++.+++.+|.|
T Consensus 33 ~~~V~v~l~l~~~-~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 33 GGKVSVSLELPTP-ACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp TCEEEEEE--SST-THT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CCEEEEEEEECCC-Cch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 3445555554433 333 568899999999999999988765
No 42
>PRK14646 hypothetical protein; Provisional
Probab=65.08 E-value=46 Score=27.37 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=47.8
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~--~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+. .+|+++...+.+.+...|.....+. .=+.++..-.-++|=.++.|
T Consensus 22 ~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldRpL~~~~d 94 (155)
T PRK14646 22 LKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSERD 94 (155)
T ss_pred CEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCCcCCCHHH
Confidence 5678888888888888888887653 4999999999999999996322222 23455554445555444433
No 43
>PRK00907 hypothetical protein; Provisional
Probab=64.05 E-value=50 Score=24.64 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCCcccceeEEEEEeC--CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 234 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG--SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G--~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
..++..+.|.+.++++.|+. +-..+..+... +..-++++|.+.. .+-.+.+-+.|++.|.|.
T Consensus 26 a~~~l~~~V~~vv~~h~p~~-~~~~i~~r~Ss~GkY~Svtv~i~ats-------~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 26 AERGLETELPRLLAATGVEL-LQERISWKHSSSGKYVSVRIGFRAES-------REQYDAAHQALRDHPEVK 89 (92)
T ss_pred CchhHHHHHHHHHHHhCCCC-CcCcEEeccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEE
Confidence 36788899999998866653 34566666553 3455666666653 234567778888888774
No 44
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=64.01 E-value=25 Score=24.01 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceE
Q 020595 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 305 (324)
Q Consensus 236 ~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v 305 (324)
|..+.+|.....+ .| .++..+.+......-...+.+.++++ ++..+++.+.|.+.++|.+|
T Consensus 3 ~GvL~Ri~~vf~r--Rg-~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRR--RG-FNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHT--TT--EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhc--CC-eEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhccCCeEeC
Confidence 4567888888765 45 57888888886544334444555442 11344577777777777554
No 45
>PRK14630 hypothetical protein; Provisional
Probab=63.75 E-value=78 Score=25.65 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCcceEEEEeecccCCC
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHR 316 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v~~v~i~i~p~~~~~ 316 (324)
..+.++..+++ .| .++.++...+-|+...+.+.|.-+..+++++..++.+.+...|.. .++ .=+.++-.-.-++
T Consensus 10 i~~li~~~~~~--~G-~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~~i~~--~Y~LEVSSPGldR 84 (143)
T PRK14630 10 VYNLIKNVTDR--LG-IEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEAVLKY--NFSLEISTPGINR 84 (143)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccCCC--CeEEEEeCCCCCC
Confidence 33444444543 34 457788877777777778888777789999999999999888864 222 2345554444555
Q ss_pred CccccCC
Q 020595 317 PEHAQAH 323 (324)
Q Consensus 317 ~~~~~~~ 323 (324)
|=.++.|
T Consensus 85 pL~~~~d 91 (143)
T PRK14630 85 KIKSDRE 91 (143)
T ss_pred cCCCHHH
Confidence 5444443
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.63 E-value=48 Score=23.17 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
.|...+++.+.+.+ .+ .++.+++....++.+...+.+.++++.+. .++.+.+++..++. + +.++++|
T Consensus 9 rpGiv~~vt~~la~--~~-~nI~dl~~~~~~~~f~~~~~v~~p~~~~~---~~l~~~l~~l~~~l-~---l~i~~~~ 75 (75)
T cd04870 9 RPGLTSALTEVLAA--HG-VRILDVGQAVIHGRLSLGILVQIPDSADS---EALLKDLLFKAHEL-G---LQVRFEP 75 (75)
T ss_pred CCCHHHHHHHHHHH--CC-CCEEecccEEEcCeeEEEEEEEcCCCCCH---HHHHHHHHHHHHHc-C---ceEEEeC
Confidence 45788899999877 24 56778877777777777888888877554 34444554444432 3 3555543
No 47
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=62.89 E-value=32 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 020595 79 LWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 116 (324)
Q Consensus 79 ~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 116 (324)
.+++.-.-.|| ||+|.|...+++.++++.+.
T Consensus 67 ~li~~~~GmRP-------GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 67 FLIGFPLGMRP-------GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred HHHhhhccCCC-------CCCeehhhhhHHHHHHHHHH
Confidence 33444444554 99999999999999887654
No 48
>PRK14633 hypothetical protein; Provisional
Probab=62.49 E-value=85 Score=25.64 Aligned_cols=82 Identities=4% Similarity=0.044 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCC
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHR 316 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~ 316 (324)
..+.+...+.+ .| ..+.++...+.|+ ..+.+.|.-++.+|+++..++.+.+...|.....+ ..=+.++-.-..++
T Consensus 6 i~~lv~p~~~~--~G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITAD--LG-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 33444444543 34 4567777776655 46777777778899999999999999999642222 23355555445555
Q ss_pred CccccCC
Q 020595 317 PEHAQAH 323 (324)
Q Consensus 317 ~~~~~~~ 323 (324)
|=.++.|
T Consensus 82 pL~~~~~ 88 (150)
T PRK14633 82 QIFNIIQ 88 (150)
T ss_pred CCCCHHH
Confidence 5444443
No 49
>PRK14641 hypothetical protein; Provisional
Probab=61.33 E-value=90 Score=26.21 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=37.4
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE 297 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~ 297 (324)
..+.++.+.+.|+...+.+.|.-+..+++++..++.+.|.+.|.
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 45778888888887778888877778999999999999999996
No 50
>PRK14639 hypothetical protein; Provisional
Probab=60.46 E-value=51 Score=26.61 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-++.+|+++..++.+.+.+.|.....+ ..-+.++..-..++|=.++.|
T Consensus 12 ~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~ 82 (140)
T PRK14639 12 VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEH 82 (140)
T ss_pred CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHH
Confidence 4567888888888788888888777899999999999999999642222 234666665555655544444
No 51
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=59.17 E-value=1.5e+02 Score=27.41 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 020595 200 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSA 234 (324)
Q Consensus 200 ~~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~~~ 234 (324)
+++-++.++++++++.+.++.+.-...++++.-..
T Consensus 108 p~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~ 142 (356)
T COG4956 108 PFISTIIPVILTIILAYFGFQLADKKRDEFLRLLN 142 (356)
T ss_pred cHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcc
Confidence 79999999999999999999999888887776543
No 52
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=58.79 E-value=42 Score=24.39 Aligned_cols=70 Identities=10% Similarity=-0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
..|++.+.+.... .++.++.+.+......+.+|..-|+ +-..+.-+-.+++++.|++..+..++.+.+.+
T Consensus 13 ~~Ir~fl~~~~~~-agIs~IeI~r~~~~i~V~I~t~~pg-~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~e 82 (85)
T cd02411 13 TMIDEYLEKELER-AGYGGMEILRTPLGTQITIYAERPG-MVIGRGGKNIRELTEILETKFGLENPQIDVQE 82 (85)
T ss_pred HHHHHHHHhhhhh-CcccEEEEEEcCCcEEEEEEECCCC-ceECCCchhHHHHHHHHHHHhCCCCceEEEEE
Confidence 3445444432211 3677888888777788888885444 32222222234555556544454456666543
No 53
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=58.14 E-value=75 Score=23.60 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=17.1
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHH
Q 020595 268 YFVEVDIVLPASMPLQEAHDIGES 291 (324)
Q Consensus 268 ~~v~~~i~v~~~~t~~~~~~i~~~ 291 (324)
+.|++++.++++++.++++++..+
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~ 25 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAR 25 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHH
Confidence 357777778888777777766654
No 54
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=57.85 E-value=57 Score=22.28 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEe-CCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEe
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 309 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~-G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i 309 (324)
+..+++.+.+.+ .|+|..+ +.. |+. +.+.+ .++ +. .++.+-+.+.|.+.|+|.++..++
T Consensus 10 ~~~~~~~~~l~~-~p~V~~~-----~~vtG~~d~~~~v--~~~---d~---~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 10 DAYDEFAEALAE-IPEVVEC-----YSVTGEYDLILKV--RAR---DM---EELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp THHHHHHHHHHT-STTEEEE-----EEESSSSSEEEEE--EES---SH---HHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred chHHHHHHHHHc-CCCEEEE-----EEEeCCCCEEEEE--EEC---CH---HHHHHHHHHHhhcCCCEEEEEEEE
Confidence 457888888887 7887755 333 433 55444 443 23 344555556688889998877665
No 55
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=57.45 E-value=27 Score=25.28 Aligned_cols=43 Identities=5% Similarity=0.032 Sum_probs=29.4
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHH
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKL 296 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~---t~~~~~~i~~~i~~~l 296 (324)
.++.++.+.+......+.+|..-|+-+ .-++.+++.+.+++.+
T Consensus 18 agis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~ 63 (81)
T cd02413 18 DGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRF 63 (81)
T ss_pred CCeeeEEEEEcCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHh
Confidence 457888999988788888888777643 3344555555555555
No 56
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=56.17 E-value=1.3e+02 Score=27.79 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCcccceeEE-------EEE-eCC---------e-EEEEEEEEcCCCCCHHHHHHHHHHH
Q 020595 231 GRSAAPEYLQKLTYLCWNHHKSIRHIDTVR-------AYT-FGS---------H-YFVEVDIVLPASMPLQEAHDIGESL 292 (324)
Q Consensus 231 ~~~~~~~~~~~i~~~l~~~~~~v~~v~~l~-------~~~-~G~---------~-~~v~~~i~v~~~~t~~~~~~i~~~i 292 (324)
+...+++..+++++.+++ .|+|.+++-+. ..+ .|. + +--.+.+.++++.+ ..+..+++
T Consensus 73 ~~~~~~~~~~~l~~~l~~-~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~~---~~~~~~~l 148 (309)
T TIGR00439 73 EKALAQSDADTVVSLLTR-DKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAFT---PAEMQAIL 148 (309)
T ss_pred CCCCCHHHHHHHHHHHhC-CCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCCC---hHHHHHHH
Confidence 455678888999999987 89988774321 111 121 1 12224444443322 24466778
Q ss_pred HHHHHcCCCcceE
Q 020595 293 QEKLELLPEIERA 305 (324)
Q Consensus 293 ~~~l~~~~~v~~v 305 (324)
++.+++.|+|.++
T Consensus 149 ~~~l~~~~gV~~v 161 (309)
T TIGR00439 149 RDNITKIPGVEEV 161 (309)
T ss_pred HHHHhcCCCCCcc
Confidence 8888888898776
No 57
>PRK11023 outer membrane lipoprotein; Provisional
Probab=56.13 E-value=33 Score=29.25 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=42.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCCccccee-EEEEEeCCeEEEEEEEEcCCCCCHHHH--HHHHHHHHHHHHcCCCcce
Q 020595 228 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDT-VRAYTFGSHYFVEVDIVLPASMPLQEA--HDIGESLQEKLELLPEIER 304 (324)
Q Consensus 228 ~Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~-l~~~~~G~~~~v~~~i~v~~~~t~~~~--~~i~~~i~~~l~~~~~v~~ 304 (324)
.|.|..++++..++..+...+ .+||++|++ +++.. +.+. .+.. ..|..+++..|...+.+..
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~~-v~GV~~V~N~l~V~~-------------~~~~-~~~~~D~~It~kik~~L~~~~~v~~ 144 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAMG-VEGVNEVYNEIRQGQ-------------PIGL-GTASKDTWITTKVRSQLLTSDSVKS 144 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHhc-CCCceeecceeeecc-------------cccc-ccccCcHHHHHHHHHHHhcCCCCCc
Confidence 477878888888888888876 899988864 33311 1110 0111 3488889888865455554
Q ss_pred EEEEee
Q 020595 305 AFVHLD 310 (324)
Q Consensus 305 v~i~i~ 310 (324)
..|+++
T Consensus 145 ~~I~V~ 150 (191)
T PRK11023 145 SNVKVT 150 (191)
T ss_pred ceEEEE
Confidence 444444
No 58
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=54.96 E-value=66 Score=23.76 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
++-+.+++.+.+++..++-..+++.+..-++=+ ..+.+.+.++.+. --.+.+++.+++.++|.++.|.
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~------g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE------GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC------cChHHHHHHHhcCCCccEEEEE
Confidence 344666666666654555455667776666644 5567777775542 1236788899888899887764
No 59
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=54.59 E-value=55 Score=23.33 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=23.1
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 020595 89 PNPYQYPIGKKRMQPLGILVFASVMATLGLQII 121 (324)
Q Consensus 89 ~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~ 121 (324)
+...++..+..++|.+-..+-.++++..++..+
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pSl 82 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPSL 82 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 444567778888999999999999998887654
No 60
>COG1279 Lysine efflux permease [General function prediction only]
Probab=53.34 E-value=1.4e+02 Score=25.72 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=46.2
Q ss_pred CHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020595 168 NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNS 228 (324)
Q Consensus 168 s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~~~~D~i~si~i~~~i~~~~~~~~~~s~~~ 228 (324)
+..+........+|...-..++.+.-....-.+|+.++.-..=+.++++.|+..+|.+.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5667777778888887754444443333333489999999999999999999999999884
No 61
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.02 E-value=25 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcceEEEEeecccCCCC
Q 020595 281 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 317 (324)
Q Consensus 281 t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 317 (324)
+...+..+...|++.++.+|-+.++-|+|+++....+
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K~~ 71 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEKLD 71 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEecccccccc
Confidence 3455677888889999888999999999998854433
No 62
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.77 E-value=75 Score=22.00 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 279 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~ 279 (324)
.+....++...+.+ -+ .+|++.++...++...++.-...+++
T Consensus 11 r~gLl~~i~~~l~~--~~-l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 11 RPGLFARIAGALDQ--LG-LNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CCCHHHHHHHHHHH--CC-CCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 35677888888876 24 67899999888655555554444543
No 63
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=52.49 E-value=79 Score=24.49 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhc-CCCc-ccceeEEEE---Ee-C-C-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEE
Q 020595 235 APEYLQKLTYLCWNH-HKSI-RHIDTVRAY---TF-G-S-HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 306 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~-~~~v-~~v~~l~~~---~~-G-~-~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~ 306 (324)
..+..++|.+.+++. .|++ .++.++-.. .. + . ...+.+.... +..+. +..+.+++++.+++.+++.++.
T Consensus 10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~-~gCP~--~~~i~~~v~~al~~~~~v~~v~ 86 (111)
T COG2151 10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTS-PGCPL--AEVIADQVEAALEEIPGVEDVE 86 (111)
T ss_pred hhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCC-CCCCc--cHHHHHHHHHHHHhcCCcceEE
Confidence 455677777777763 2332 234443211 11 1 1 2445555544 45554 3789999999999999998888
Q ss_pred EEeecc
Q 020595 307 VHLDYE 312 (324)
Q Consensus 307 i~i~p~ 312 (324)
|++.-+
T Consensus 87 V~l~~~ 92 (111)
T COG2151 87 VELTLS 92 (111)
T ss_pred EEEEEc
Confidence 777544
No 64
>PRK04998 hypothetical protein; Provisional
Probab=52.34 E-value=91 Score=22.86 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEe--CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~--G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
+++..+.|.+.+.++.|+. ..++.+.. |...-+++.+.+.. .+-.+.+-+.|++.++|.
T Consensus 25 ~~~~~~~v~~v~~~~~~~~---~~~~~r~S~~GkY~Svtv~v~v~s-------~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 25 RPELVDQVVEVVQRHAPGD---YTPTVKPSSKGNYHSVSITITATS-------IEQVETLYEELAKIEGVR 85 (88)
T ss_pred cHhHHHHHHHHHHHhCCCC---CCceEccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhcCCCEE
Confidence 5688888998887755542 23455544 44455666666653 334567778888888874
No 65
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=51.50 E-value=74 Score=24.35 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=34.1
Q ss_pred cceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 255 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 255 ~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
++.++.+.+....+.+.++..-|+-+- .+--+-.+++++.|++..+...+.|++.+
T Consensus 50 gis~I~I~R~~~~i~I~I~t~rPg~vI-G~~G~~i~~L~~~l~~~~~~~~~~I~V~e 105 (109)
T cd02412 50 GISRIEIERKADRVEVTIHTARPGIII-GKKGAGIEKLRKELQKLLGNKKVRINIVE 105 (109)
T ss_pred CccEEEEEEcCCCEEEEEEeCCCCccc-CCchHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 566888888777788999888776542 22223335555666543342345666544
No 66
>PRK02047 hypothetical protein; Provisional
Probab=50.08 E-value=1e+02 Score=22.80 Aligned_cols=62 Identities=10% Similarity=0.159 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEe--CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcce
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIER 304 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~--G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~ 304 (324)
.++..+.|.+.++++.++ .+...+..+.. |...-+++.+.+.. .+-.+.+-+.|++.+.|..
T Consensus 26 ~~~~~~~v~~iv~~~~~~-~~~~~i~~k~Ss~GkY~Svtv~v~v~s-------~eq~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 26 HPEFADTIFKVVSVHDPE-FDLEKIEERPSSGGNYTGLTITVRATS-------REQLDNIYRALTGHPMVKV 89 (91)
T ss_pred cHhHHHHHHHHHHHhCCC-CccCceEEccCCCCeEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEEE
Confidence 567788888888774454 23345666655 34455666666653 2345567778887777743
No 67
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=49.77 E-value=1.4e+02 Score=24.35 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 020595 144 WVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 223 (324)
Q Consensus 144 ~~~~~~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~~~~~~D~i~si~i~~~i~~~~~~~~~ 223 (324)
++.+...++.+.+.+--...|+.+...-.....+..+|.++ .++.-+.+....+ ...+...++..++++..++|+.|
T Consensus 22 ~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vs--fgvaPa~l~~~~~-~~~~~~~~~~~~~~l~~a~RLAr 98 (151)
T TIGR00473 22 RACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVS--FGVAPAALAYSIG-NFQTIGILVAALFFLCGILRLAR 98 (151)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777766666777666677788888999886 3555555544332 11223334445678899999999
Q ss_pred HHHH
Q 020595 224 ENVN 227 (324)
Q Consensus 224 ~s~~ 227 (324)
-|..
T Consensus 99 FN~~ 102 (151)
T TIGR00473 99 FNVL 102 (151)
T ss_pred hccc
Confidence 8764
No 68
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=49.07 E-value=1e+02 Score=25.14 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 265 GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 265 G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
|..+.|++.+..+.. ...+.+++++++.|++. ++.++.|++.
T Consensus 24 gd~V~VtIt~Ty~gc---pa~e~L~~~I~~aL~~~-Gv~~V~V~i~ 65 (146)
T TIGR02159 24 GGGVVVKFTPTYSGC---PALEVIRQDIRDAVRAL-GVEVVEVSTS 65 (146)
T ss_pred CCEEEEEEEeCCCCC---chHHHHHHHHHHHHHhc-CCCeEEEeEe
Confidence 555666666654432 23478999999999875 7776666654
No 69
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=49.02 E-value=73 Score=25.53 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCCc
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRPE 318 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~~ 318 (324)
..+.++...+.|+...+.+.+.-+..+|+++..++.+.+...|.....+ .+-+.++-.-..++|=
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L 76 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPL 76 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcC
Confidence 5678999999998888888887788899999999999999999642212 2445665543444443
No 70
>PRK14632 hypothetical protein; Provisional
Probab=48.66 E-value=1.6e+02 Score=24.63 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=45.1
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++.... |+...+.+.|.-+..+|+++...+.+.+...|.....+. .=+.++-.-..++|=.++.|
T Consensus 23 ~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~ 92 (172)
T PRK14632 23 LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFFRAEQ 92 (172)
T ss_pred CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHH
Confidence 4566777654 556778888877778999999999999999996422222 23455544445554444433
No 71
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=47.51 E-value=1e+02 Score=22.03 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
.|...+++....+. .| .++..+.+-.....-...+.+.+.. ++..+++.+.|.+.++|.+|.+
T Consensus 13 ~pGVL~Ri~~lf~r--RG-fnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRH--RG-FQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhc--CC-eeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHHHhcCcCeEEEEE
Confidence 46788888888865 45 5677777766543334455555542 3356678888888888877764
No 72
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.98 E-value=92 Score=21.32 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEEEe-CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 236 ~~~~~~i~~~l~~~~~~v~~v~~l~~~~~-G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
+....+|.+.+.+. + .++..+..... ++...+.+.+++.+. +.-.+++-+.|++.|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~--~-inI~~i~~~~~~~~~~~i~~~v~v~~~------~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQV--R-GNVLTINQNIPIHGRANVTISIDTSTM------NGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHc--C-CCEEEEEeCCCCCCeEEEEEEEEcCch------HHHHHHHHHHHhcCCCeEEEEE
Confidence 46778888888762 3 23444433221 233556666666432 3345677788899999988764
No 73
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=46.31 E-value=1e+02 Score=22.78 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
++-+++++.+.+++..+.-...+..+..-++=+ ..+.+.+.++.+- --.+.+++.+++.++|+++.|.
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~------~~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEE------GGTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCC------cCcHHHHHHHhccCCCcEEEEE
Confidence 334566666666554454455666777666644 4456666665431 1236788888888888887764
No 74
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=45.15 E-value=1.5e+02 Score=23.41 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEE-------EeCC----eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAY-------TFGS----HYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEI 302 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~-------~~G~----~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v 302 (324)
.+...+++.+.+.+ .|+....++|+| ..|. +-+|.+.+.+-+.-|.++-.++.+++-+.+++ .+.+
T Consensus 18 ~~~Ll~~l~~~l~~--sglF~~~~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l~~~l~~~l~~~~~~~ 95 (126)
T PRK15031 18 LPGLFAKVNQALAA--TGIFPLGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFALIKAHFAAL 95 (126)
T ss_pred HHHHHHHHHHHHHh--CCCCCccccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688888888765 677777777765 4432 15677777777777888888999998888874 5555
Q ss_pred -----ceEEEEee
Q 020595 303 -----ERAFVHLD 310 (324)
Q Consensus 303 -----~~v~i~i~ 310 (324)
..+++++.
T Consensus 96 ~~~~~~~LS~Ei~ 108 (126)
T PRK15031 96 MESRYLALSFEIE 108 (126)
T ss_pred hcccceEEEEEEE
Confidence 45666653
No 75
>PRK14645 hypothetical protein; Provisional
Probab=43.62 E-value=1.8e+02 Score=23.83 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=47.0
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcC-C-CCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLP-A-SMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~-~-~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+.|+...+.+.|.-+ + .+++++..++.+.+...|.....+ ..=+.++-.-..++|=.++.|
T Consensus 24 ~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~d 96 (154)
T PRK14645 24 YEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESPGPKRPLFTARH 96 (154)
T ss_pred CEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeCCCCCCCCCCHHH
Confidence 567888888888777778887753 2 499999999999999999632222 123555554445555444333
No 76
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.50 E-value=2.1e+02 Score=24.49 Aligned_cols=134 Identities=7% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCC
Q 020595 21 TKEERENLARS----ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTP-NPYQYP 95 (324)
Q Consensus 21 ~~~~~~~~~~~----~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~-~~~~~p 95 (324)
.++.+++.... -..++..++..-.+++++..+.+++++...-...-.--+.-.+..++.+.....--++ .+.+.-
T Consensus 64 ~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r 143 (206)
T PF06570_consen 64 KPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKR 143 (206)
T ss_pred ccccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020595 96 IGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFT 167 (324)
Q Consensus 96 ~G~~r~E~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 167 (324)
.++.|. .......+++..+++.+..-+...++|.- ......+++++.-..-+++.||.+
T Consensus 144 ~~~~k~---~~~~~~~~~~w~~~~~~~~~lp~~inp~l----------~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 144 PSWWKY---ILISVLAMVLWIVIFVLTSFLPPVINPVL----------PPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred cHHHHH---HHHHHHHHHHHHHHHHHHHHccccCCcCC----------CHHHHHHHHHHHHHHHHHHHHHhC
No 77
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=43.16 E-value=1.1e+02 Score=21.33 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEEEe--CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceE
Q 020595 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 305 (324)
Q Consensus 236 ~~~~~~i~~~l~~~~~~v~~v~~l~~~~~--G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v 305 (324)
+..+.+|.+.+.+ .+ .++.++++... +....+.+.+++.. .++. +++-+.|++.|+|.+|
T Consensus 17 ~GlL~dI~~~i~~--~~-~nI~~i~~~~~~~~~~~~~~l~v~V~d---~~~L----~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISE--NG-VNIRSINARTNKDDGTARITLTVEVKD---LEHL----NQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHC--SS-SEEEEEEEEE--ETTEEEEEEEEEESS---HHHH----HHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHH--CC-CCeEEEEeEEeccCCEEEEEEEEEECC---HHHH----HHHHHHHHCCCCeeEE
Confidence 4677888888876 34 56788888875 45688999999973 2333 3555677788888765
No 78
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=42.89 E-value=2.1e+02 Score=24.34 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeC-----C-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG-----S-HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G-----~-~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
.|....++.+.+.+ .+ .++.++++...+ . .+.+.+.+.+|++..+.+ +++++++.-.+. .+.+.
T Consensus 105 rPGIV~~vT~~la~--~~-iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~---L~~~l~~l~~eL----~vd~~ 174 (190)
T PRK11589 105 SPHLIERFTALFDS--HH-MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAAN---IEQAFKALCTEL----NAQGS 174 (190)
T ss_pred CCCHHHHHHHHHHH--cC-CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHH---HHHHHHHHHHHh----CceEE
Confidence 45688889998876 34 578888887654 2 377899999999876643 444444433332 34556
Q ss_pred eecccCCC
Q 020595 309 LDYEYTHR 316 (324)
Q Consensus 309 i~p~~~~~ 316 (324)
+||.+.+.
T Consensus 175 l~~~~~~~ 182 (190)
T PRK11589 175 INVVNYSQ 182 (190)
T ss_pred EEEeeccC
Confidence 66655433
No 79
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=42.23 E-value=1.4e+02 Score=22.07 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcccceeEEEEEeC--CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 234 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG--SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G--~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
..++..+++-+.++++.|| ...+.+..+... +..-|++.|... +.++ .+.+-+.|.+.+.|.
T Consensus 24 a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A~---~~EQ----~e~ly~eL~~~~~Vk 87 (90)
T COG2921 24 AGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRAT---NIEQ----VEALYRELRKHEIVK 87 (90)
T ss_pred cchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEEC---CHHH----HHHHHHHHhhCCceE
Confidence 4678888899999886676 334444334443 334455555543 3343 344556677766654
No 80
>COG4035 Predicted membrane protein [Function unknown]
Probab=41.57 E-value=27 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 020595 67 LDSLLDLLSGF-ILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 116 (324)
Q Consensus 67 ~hs~~D~~~~~-~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 116 (324)
..++.|.+=.. ..++++..--|| ||+|.|++.+-+.+++++.-
T Consensus 61 ~~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 61 MRSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred ccCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHHh
Confidence 34444444333 334455444554 99999999997777766554
No 81
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=41.07 E-value=27 Score=22.51 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 020595 199 DDWMDPVGAIILALYTIRT 217 (324)
Q Consensus 199 ~~~~D~i~si~i~~~i~~~ 217 (324)
+.++||+.++++++.-.+.
T Consensus 4 sr~lDP~~av~iG~~ayyl 22 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYL 22 (47)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 4689999999998865443
No 82
>PRK00341 hypothetical protein; Provisional
Probab=40.82 E-value=1.5e+02 Score=21.98 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCC--eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS--HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~--~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
.++..+.|.+.++++. .. +...+..+.... ..-+++.+.+.. .+-.+.+-+.|++.|.|.
T Consensus 27 ~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~s-------~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 27 GVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVATD-------EDQLQDINSALRATGRVH 88 (91)
T ss_pred chhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEECC-------HHHHHHHHHHHhhCCCEE
Confidence 6788888988887743 22 344555555533 355666666653 334567778888888874
No 83
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=40.07 E-value=2.7e+02 Score=30.36 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~ 300 (324)
+++..+.|.+-+++...++.++++++.....+...+.+....+.++. ....++++++.+.-.+.|
T Consensus 56 ~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~~d~~-~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 56 PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFDRDIN-GAARDVQAAINAAQSLLP 120 (1025)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCChH-HHHHHHHHHHHHHHhhCC
Confidence 45555566666665556666677777665544444444443333321 222445555544333455
No 84
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=39.96 E-value=1e+02 Score=19.94 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCC--CcceEEEEeeccc
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLP--EIERAFVHLDYEY 313 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~--~v~~v~i~i~p~~ 313 (324)
++|.+.+..+.++-.++.+.+.+.+.+.. .-.+++|.++..+
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~ 46 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMP 46 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeC
Confidence 34555555578999999999999986532 3446777776543
No 85
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=39.60 E-value=1.2e+02 Score=26.35 Aligned_cols=71 Identities=10% Similarity=-0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 239 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 239 ~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
..+|++.+.+.... .++.++.+.+......+.+|..-+ .+-...-.+-.+++++.|++.+++.++.+++.+
T Consensus 14 ~~~irefi~~~~~~-AgIs~IeI~Rt~~~i~I~I~ta~P-GivIGk~G~~I~klk~~Lkk~~~~~~v~I~v~e 84 (207)
T PRK04191 14 KVMIDEYLAKELYR-AGYGGMEIKKTPLGTRITIYAERP-GMVIGRGGKNIRELTEILEKKFGLENPQIDVKE 84 (207)
T ss_pred HHHHHHHHHhhhhh-cceeEEEEEEcCCcEEEEEEECCC-CeEECCCchhHHHHHHHHHHHhCCCceeEEEEE
Confidence 34455555442222 467788888877778888888444 332222233345555666554555556666654
No 86
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.54 E-value=99 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHH
Q 020595 37 RISNVANMVLFAAKVYASVKSGSLAI 62 (324)
Q Consensus 37 ~~s~~~~~~~~i~~~~~g~~~~S~aL 62 (324)
.+++++|++++++-..++.+..+...
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~ 103 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYS 103 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888887776655444433
No 87
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=39.45 E-value=2.4e+02 Score=24.00 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcC-CCccc-ceeEEEEEeC-Ce-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHH-cCCCcceEEEEe
Q 020595 235 APEYLQKLTYLCWNHH-KSIRH-IDTVRAYTFG-SH-YFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHL 309 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~-~~v~~-v~~l~~~~~G-~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~-~~~~v~~v~i~i 309 (324)
+++..++|++.+.+.+ |.+.. =-|+.+.... +. ++|.+.-... . -......+.+.|++.|+ +.|++..|.--.
T Consensus 103 ~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~-g-C~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~ 180 (190)
T TIGR03341 103 DAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCN-G-CSMVDVTLKDGVEKTLLERFPELKGVRDAT 180 (190)
T ss_pred chHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecCC-C-CcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence 3446777777775312 22211 1245555543 22 2333333222 1 12233567788999997 478888776555
Q ss_pred ecccCCCC
Q 020595 310 DYEYTHRP 317 (324)
Q Consensus 310 ~p~~~~~~ 317 (324)
+-....+|
T Consensus 181 ~~~~~~~~ 188 (190)
T TIGR03341 181 DHTRGEHS 188 (190)
T ss_pred CccccCCC
Confidence 54444444
No 88
>PRK14643 hypothetical protein; Provisional
Probab=38.54 E-value=2.3e+02 Score=23.52 Aligned_cols=70 Identities=4% Similarity=0.064 Sum_probs=46.4
Q ss_pred ccceeEEEEEeCCeEEEEEEEEc----CCCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccCCCCccccCC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHRPEHAQAH 323 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v----~~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~~~~~~~~~~ 323 (324)
..+.++...+-|+...+.+.|.= ++.+|+++..++.+.+.+.|.....+ ..=+.++..-..++|=.++.|
T Consensus 24 ~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGleRpL~~~~d 98 (164)
T PRK14643 24 LKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSGIEKQIRSQEE 98 (164)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCCCCCCCCCHHH
Confidence 56778888888877777777752 24599999999999999999632222 223455554445555444433
No 89
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=37.89 E-value=2.6e+02 Score=26.59 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=36.7
Q ss_pred CCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCc
Q 020595 251 KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEI 302 (324)
Q Consensus 251 ~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v 302 (324)
...-+..+++.+..|+.+++.+++...+.|-.-=.....+.+-+.|++ .++.
T Consensus 136 sr~ggl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~ 188 (373)
T PF00368_consen 136 SRGGGLRDIEVRIVGRFVHLRFHYDTGDAMGANMVNTATEAVCPWIEEQFGGM 188 (373)
T ss_dssp CCTEEEEEEEEEECSTEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHHHTSE
T ss_pred CCceeeeEEEEEecCCEEEEEEEEEccccchhhHHHHHHHHHHHHHHHhcccc
Confidence 334567888887789999999999998887665566677777777754 4443
No 90
>PRK14631 hypothetical protein; Provisional
Probab=37.65 E-value=2.5e+02 Score=23.61 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=46.2
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcC------------------CCCCHHHHHHHHHHHHHHHHcCCCc-ceEEEEeecccC
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLP------------------ASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYT 314 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~------------------~~~t~~~~~~i~~~i~~~l~~~~~v-~~v~i~i~p~~~ 314 (324)
..+.++...+-|+...+.+.|.-+ ..+++++...+.+.+...|.....+ ..=+.++..-..
T Consensus 23 ~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 102 (174)
T PRK14631 23 VDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGW 102 (174)
T ss_pred CEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 567788888877776677777642 3599999999999999999632111 123555554455
Q ss_pred CCCccccCC
Q 020595 315 HRPEHAQAH 323 (324)
Q Consensus 315 ~~~~~~~~~ 323 (324)
++|=.+..|
T Consensus 103 dRpL~~~~d 111 (174)
T PRK14631 103 DRPFFQLEQ 111 (174)
T ss_pred CCcCCCHHH
Confidence 555544444
No 91
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=36.99 E-value=3.8e+02 Score=25.82 Aligned_cols=73 Identities=10% Similarity=0.266 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc-CCCcceEEEEeeccc
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 313 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~-~~~v~~v~i~i~p~~ 313 (324)
..+++++..++ ....-+..+++.+..|+.+++.+.+...+.|-.-=.....+.+-+.|++ .|+. ..+.+....
T Consensus 150 ~~~~i~~~a~s-tsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~--~~~~i~gN~ 223 (403)
T cd00643 150 NFEAIKEVAES-TSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDM--EVISLSGNF 223 (403)
T ss_pred HHHHHHHHHHh-cCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCc--eEEEEeccc
Confidence 44455555544 3444567788888788888888888777665544445566666666664 4443 344555443
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=36.80 E-value=1.6e+02 Score=21.10 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 306 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~ 306 (324)
.|..++++.....+ .| .++..+.+-.....-.-.+.+.+.++ ++..+++.+.|++..+|.+|.
T Consensus 12 ~pGVL~Ri~~lf~r--Rg-fNI~Sl~vg~te~~~~sriti~~~~~------~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 12 DPSVLLRISGIFAR--RG-YYISSLNLNERDTSGVSEMKLTAVCT------ENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred CCCHHHHHHHHHhc--cC-cceEEEEecccCCCCeeEEEEEEECC------HHHHHHHHHHHhCCcCEEEEE
Confidence 45788888888765 45 45666666555433334455554333 345667888888877876653
No 93
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=36.72 E-value=1.6e+02 Score=21.29 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 232 RSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 232 ~~~~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
..+.|+..+++.+..+. .|. .+-.++....-..-.+.+.+.|+++-+++ -+...|+|.+++.+|.|.
T Consensus 10 ar~~pe~leRVLrvtrh--RGF-~vcamnmt~~~da~~~nie~tV~s~R~~~-------lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 10 ARFNPETLERVLRVTRH--RGF-RVCAMNMTAAVDAGNANIELTVDSDRSVD-------LLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred ccCChHHHHHHHHHhhh--cCe-EEEEeecccccccccceEEEEEcCCCChH-------HHHHHHHHHccceeEEEe
Confidence 45788999999988863 452 23333333321112234555566655542 445566666777766554
No 94
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=36.27 E-value=59 Score=21.26 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 020595 92 YQYPIGKKRMQPLGILVFASVMATLGLQIIL 122 (324)
Q Consensus 92 ~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~ 122 (324)
+.|.|-|+.+.. ++++.+.+++.+|+.++.
T Consensus 5 ~pF~YDy~tLri-gGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 5 DPFYYDYETLRI-GGLIFAGVLFILGILIIL 34 (50)
T ss_dssp SGGGGCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred CCCccchhHhhc-cchHHHHHHHHHHHHHHH
Confidence 556677777665 778888888888876654
No 95
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=35.87 E-value=1.2e+02 Score=28.74 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 020595 60 LAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 133 (324)
Q Consensus 60 ~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~ 133 (324)
..+-|--+|-++|++=++-++.+..+..-.| +|.-.+++..++.+++.+...+.++++.+..|+++.|
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P------~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P 291 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKP------EYKIADPICTFVFSIIVLGTTITILRDILGILMEGTP 291 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecc------cceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 5666777899999999988888887766554 6778999999999999999999999999999999887
No 96
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=35.84 E-value=3.7e+02 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.9
Q ss_pred ccchhhHHHHHHHHHHHH
Q 020595 97 GKKRMQPLGILVFASVMA 114 (324)
Q Consensus 97 G~~r~E~l~~l~~~~~l~ 114 (324)
+|+++|.+...+++++.+
T Consensus 112 ~y~~~E~~~~~lv~~m~l 129 (358)
T PF01566_consen 112 GYRRLERILKVLVAVMVL 129 (358)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 689999999988888743
No 97
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=35.52 E-value=59 Score=35.25 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCccc----ceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 237 EYLQKLTYLCWNHHKSIRH----IDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~----v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
+..+++++.+.+ .++... ..+++....++.....+.+.+.++ +.++..+.++++++.+++.|++.++...
T Consensus 635 ~l~~~lr~~l~~-~~~~~~~~~~~~~~~~~~~~~g~~~~i~v~i~G~-d~~~L~~~a~~v~~~l~~~pgv~dv~~~ 708 (1021)
T PF00873_consen 635 ELIDELRQKLKQ-LPGARVFVFSPPDLRGLGSGPGSSAPIQVEIYGD-DLEELRKAAEKVKAKLAEIPGVTDVRDD 708 (1021)
T ss_dssp HHHHHHHHHCCT-STSSEEEEEEHCSSCCCCSSSSEEEEEEEECSSS-CHHHHHHHHHHHHHHHHHSTTEEEEEES
T ss_pred HHHHHHHHhhhh-CCCcceeccccccccccccccccceeeeeccCCC-CHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 455555555544 454321 011222223445667777777665 6789999999999999999998766543
No 98
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=35.48 E-value=1e+02 Score=20.35 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=29.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc--ceEEEEeecc
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPEI--ERAFVHLDYE 312 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v--~~v~i~i~p~ 312 (324)
++|.+-+..|.++-.++.+.+.+.+.+..++ .+++|-++..
T Consensus 4 i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~ 46 (61)
T PRK02220 4 VHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEM 46 (61)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEe
Confidence 4556555678999999999999999754343 4577766553
No 99
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=34.10 E-value=3.6e+02 Score=29.49 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~-~~~i~~~i~~~l~~~~ 300 (324)
+++..+++.+-+++...++.++.+++.+...++ ...+.++++++...++ ..++++++.+...+.|
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP 119 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLP 119 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCC
Confidence 445556676666655667777777777663222 2244444555544433 3456666655544566
No 100
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=33.67 E-value=2.9e+02 Score=26.37 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=48.7
Q ss_pred hcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhh-----------hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020595 166 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANY-----------IDD-WMDPVGAIILALYTIRTWSMTVLENVNSLVGR 232 (324)
Q Consensus 166 ~~s~~l~a~~~~~~~D~~~s~~~~i~~~~~~~-----------~~~-~~D~i~si~i~~~i~~~~~~~~~~s~~~Ll~~ 232 (324)
.+|..+.+++.|.++|.+.= ++++.... +|| -.+-+++++=+++.....+.++.|+....+..
T Consensus 32 ~~sLaLiadSfHML~dIiaL----ivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p 106 (404)
T KOG1483|consen 32 TNSLALIADSFHMLNDIIAL----IVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEP 106 (404)
T ss_pred cchHHHHhhHHHHHHHHHHH----HHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 57889999999999998653 23333322 134 67888999999999999999999999988764
No 101
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=33.61 E-value=3.7e+02 Score=24.68 Aligned_cols=94 Identities=9% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------hhcCCCCHHHHHHHHHHHHhcCCCcccceeE-------------
Q 020595 205 VGAIILALYTIRTWSMTVLENVNS------------LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTV------------- 259 (324)
Q Consensus 205 i~si~i~~~i~~~~~~~~~~s~~~------------Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~l------------- 259 (324)
+.++.|++++....+-..+..-+. -++..++++..+.+++.+++ .|||+++.-+
T Consensus 28 v~~vaitl~L~~~~~l~~~nv~~~a~~~~~~v~i~vyL~~~~~~~~~~~v~~~i~~-~~gV~~v~~~sre~~l~~L~~~l 106 (297)
T COG2177 28 VSVVAITLFLPGVFLLVVLNVNSLATQWESQVEITVYLQIDADQDDAALVREKIEG-IPGVKSVRFISREEALKELQPWL 106 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceEEEEEecCCChHHHHHHHHHHhc-CCCcceEEEeCHHHHHHHHHHHc
Q ss_pred ---EEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEE
Q 020595 260 ---RAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 306 (324)
Q Consensus 260 ---~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~ 306 (324)
..-..+++ +--.+.|++++....+ .+++.+++.|+|.+|.
T Consensus 107 g~~~~~~l~~nPLP~~~vV~~~~p~~~~-------~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 107 GFGALLMLDENPLPDVFVVTPDDPPQVK-------AIAAALRDLPGVAEVD 150 (297)
T ss_pred CchhhhcCCCCCCCceEEEEeCCCccHH-------HHHHHHHcCccceehh
No 102
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=33.33 E-value=2e+02 Score=23.24 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 236 ~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
++..+++.+.+.+ .|+|..++.+ .|+. +++.+ .++. . +++.+-+.+.+.+.|+|.++..++.
T Consensus 80 ~~~~~~~~~~l~~-~p~V~~~~~~----tG~~dl~~~v--~~~d---~---~~l~~~~~~~l~~~~gV~~~~t~iv 142 (153)
T PRK11179 80 AKDYPSALAKLES-LDEVVEAYYT----TGHYSIFIKV--MCRS---I---DALQHVLINKIQTIDEIQSTETLIS 142 (153)
T ss_pred cccHHHHHHHHhC-CCCEEEEEEc----ccCCCEEEEE--EECC---H---HHHHHHHHHHhhcCCCeeeEEEEEE
Confidence 3456777777876 7887765443 2543 44444 4442 2 3444456677888899997666654
No 103
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.22 E-value=1.7e+02 Score=20.35 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCC-CC---CHHHHHHHHHHHHHHH
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SM---PLQEAHDIGESLQEKL 296 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~-~~---t~~~~~~i~~~i~~~l 296 (324)
.|....+|.+.+.+ .+ .++++.++...|....-.++|.=++ .. +.++..++.+.+++.|
T Consensus 10 r~gLl~~i~~~l~~--~~-lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 10 RPGLLSEVFAVLAD--LH-CNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CCCHHHHHHHHHHH--CC-CcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 45788889888876 34 5788999998877666566654222 22 3344556666665544
No 104
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=32.75 E-value=26 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.5
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCCccccee
Q 020595 229 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDT 258 (324)
Q Consensus 229 Ll~~~~~~~~~~~i~~~l~~~~~~v~~v~~ 258 (324)
|.|..++++..+++.+.+++ ++|+.+|.+
T Consensus 30 L~G~v~s~~~~~~a~~~a~~-v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARS-VAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHC-C-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhcc-CCCcCEEEE
Confidence 66777888999999999987 899988865
No 105
>PRK05783 hypothetical protein; Provisional
Probab=32.58 E-value=2e+02 Score=21.04 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHH-HcCCCcceEEEEeec
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDY 311 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l-~~~~~v~~v~i~i~p 311 (324)
+.|++++.+ -|...|.++|+ |..+. +.+ +.+ +-+++.+..+++-+.| -..|-|++..|.+++
T Consensus 21 ~aI~~aL~~--lg~~~V~~VRv---GK~ie--l~l--~~~-~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 21 ETIQRYVIE--RYTGNIIEVRA---GKYLV--FKI--EAN-SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHH--cCCCCcceEEe---eEEEE--EEE--cCC-CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 456667754 25556777776 54433 333 332 4466666777666666 455888887777654
No 106
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=32.50 E-value=5e+02 Score=28.43 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~ 300 (324)
+++..+.|.+-+++...++.++++++.....+.-.+.++...+.++. ...+++++++.+.-.+.|
T Consensus 65 ~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~-~a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 65 PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLD-VAEQEVQAAINAATNLLP 129 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChH-HHHHHHHHHHHHHHHhCC
Confidence 34555556666666666777788888877655555555544433321 222445555544333455
No 107
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=32.24 E-value=59 Score=21.52 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCcceEEEEee
Q 020595 286 HDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 286 ~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
.....++++.|++.|||.++.+.++
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~ 34 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLE 34 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECC
Confidence 4578899999999999988776543
No 108
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.75 E-value=1.7e+02 Score=29.24 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHH---cCCCcceEEEE
Q 020595 241 KLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE---LLPEIERAFVH 308 (324)
Q Consensus 241 ~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~---~~~~v~~v~i~ 308 (324)
.+.++... ++||. ...+.+.|+.+.|-+. |...+-.++..++.+|.+.++ .|||-..|||-
T Consensus 441 ~le~i~~~-~~gv~---~~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 441 KLEEIANS-FEGVE---KSYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHh-CCCch---hhhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 34555544 66654 4456677887654433 345778888999999999995 48887666663
No 109
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=31.27 E-value=3.5e+02 Score=23.52 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
+..+++.+.+.+ .+ ..+++++..+..+...+++.+.++++.+. +++-+.|++.++|.++.+
T Consensus 154 ~~~~~i~~~l~~--~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~L~~~~~V~~v~~ 214 (215)
T PRK09977 154 GNVVSMLDWFKQ--QK-IKTDLVSLQENEDHEVVAIDITLHATTSI-------EDLYRLLKGIAGVKGVSI 214 (215)
T ss_pred ccHHHHHHHHHH--cC-ceEEEEEEEecCCCcEEEEEEEECCCCCH-------HHHHHHHhcCCCceEEEe
Confidence 345677777765 33 34566666544333446666666654433 244567788888877643
No 110
>PRK14636 hypothetical protein; Provisional
Probab=31.08 E-value=3.2e+02 Score=22.96 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCC--CCCHHHHHHHHHHHHHHHHcCCCcc-eEEEEeecccC
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYT 314 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~--~~t~~~~~~i~~~i~~~l~~~~~v~-~v~i~i~p~~~ 314 (324)
..+.+...+.+ .| ..+.++...+-|+...+.+.|.-++ .+++++..++.+.+...|.....+. .=+.++-.-..
T Consensus 7 i~~lvep~~~~--~G-leLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGl 83 (176)
T PRK14636 7 LTALIEPEAKA--LG-LDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGI 83 (176)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCC
Confidence 33444444543 34 4577888777777777788886543 4999999999999999996432222 22455544344
Q ss_pred CCCccccC
Q 020595 315 HRPEHAQA 322 (324)
Q Consensus 315 ~~~~~~~~ 322 (324)
++|=-++.
T Consensus 84 dRpL~~~~ 91 (176)
T PRK14636 84 DRPLTRPK 91 (176)
T ss_pred CCCCCCHH
Confidence 44444333
No 111
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=30.95 E-value=1.5e+02 Score=26.20 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=33.7
Q ss_pred ccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeeccc
Q 020595 254 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 313 (324)
Q Consensus 254 ~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 313 (324)
.++.++|+|..|.. +.|+++++- ....-+-.+.+.+.+++. |..+|++.++.+.
T Consensus 197 ~g~~~~rvr~~~~~----a~ie~~~~~-~~~~~~~~~~i~~~~~~~-gf~~v~ldl~g~~ 250 (252)
T TIGR00268 197 AGVGQVRVRNYDNL----AVIEVPEDE-LSKLLNEAEEVRDKFKDI-GFRKVLIDLEGYR 250 (252)
T ss_pred cCCCeEEEEecCCe----EEEEECHHH-HHHHHhhHHHHHHHHHHc-CCCeEEEccCCcc
Confidence 35678999988764 445666541 122222256677777774 7778888776643
No 112
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=30.87 E-value=98 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCcceEEEEeec
Q 020595 287 DIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 287 ~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
.+.+++++.|++.+||.++.||+..
T Consensus 109 ~~eQ~le~tLs~mDGVi~ArV~I~l 133 (246)
T COG4669 109 AKEQQLEQTLSKMDGVISARVHISL 133 (246)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEc
Confidence 5667888889999999999999874
No 113
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=30.84 E-value=5.1e+02 Score=28.29 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEE--EEEEEEcCCCCCHHHHHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYF--VEVDIVLPASMPLQEAHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~--v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~ 300 (324)
+++..++|.+-+++...++.++.++......+... +++....|++. ...++++++.+.-.+.|
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~---A~~~V~~kv~~~~~~LP 119 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDT---AAVQVQNKIQQAESRLP 119 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHH---HHHHHHHHHHHHHhcCC
Confidence 45667777777777777888888888877654444 44433444332 12244444444433344
No 114
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=30.46 E-value=1.4e+02 Score=19.68 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=28.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCC--cceEEEEeecc
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPE--IERAFVHLDYE 312 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~--v~~v~i~i~p~ 312 (324)
++|.+.+..|.++-.++.+.+.+.+.+..+ ..+++|.++..
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~ 46 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDV 46 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEc
Confidence 455555556899999999999999865333 34566666543
No 115
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.69 E-value=3.1e+02 Score=23.94 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 020595 92 YQYPIGKKRMQPLGILVFASVMATLGLQII 121 (324)
Q Consensus 92 ~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~ 121 (324)
.++..+..++|.+..++-.++++++++..+
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~s~ 81 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALPSL 81 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 456678889999998888888777665544
No 116
>PRK09579 multidrug efflux protein; Reviewed
Probab=29.44 E-value=5.3e+02 Score=28.13 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHHcCCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLPE 301 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~-~~~i~~~i~~~l~~~~~ 301 (324)
+++..+.|.+-+++...++.++++++.....+.-.+.+ +++.+.+.++ ..++++++.+.-.+.|+
T Consensus 56 pe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v--~f~~g~d~~~a~~~v~~~v~~v~~~LP~ 121 (1017)
T PRK09579 56 AETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISI--YARIGADSDRLFTELLAKANEVKNQLPQ 121 (1017)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEE--EEECCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45556666666666667777788888776644444443 4444433322 34444444433223453
No 117
>COG4331 Predicted membrane protein [Function unknown]
Probab=29.38 E-value=3.1e+02 Score=22.33 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 020595 38 ISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ 87 (324)
Q Consensus 38 ~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~ 87 (324)
.++++-..+-+.|+.=...+||..|. +-+..|++..+.++.-+|.-+
T Consensus 111 lsi~vl~lFI~YQlyr~~~t~Si~li---vlti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 111 LSILVLVLFILYQLYRFFNTGSISLI---VLTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888999999999 789999999999998887665
No 118
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=29.06 E-value=1.8e+02 Score=24.89 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~---t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
.+|++.+.+.... .++.++.+.+......+.+|..-|+-. .-.+.+++.+.+++.+ +..++.+.+.+
T Consensus 13 ~~ire~l~k~~~~-agis~ieI~r~~~~~~I~I~~~rPg~vIG~~g~~i~~l~~~l~k~~----~~~~~~I~v~e 82 (195)
T TIGR01008 13 TLIDEFLKKELRE-AGYSGVDVRVTPLGTKVIIFAERPGLVIGRGGRRIRELTEKLQKKF----GLENPQIDVEE 82 (195)
T ss_pred HHHHHHHHHHHHh-CCeeEEEEEEcCCcEEEEEEECCCceEECCCchHHHHHHHHHHHHh----CCCceEEEEEE
Confidence 3444444432222 367788898887778888888776543 2234444554444443 33234555443
No 119
>PRK00106 hypothetical protein; Provisional
Probab=28.89 E-value=1.5e+02 Score=29.79 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCC-CCCHHHHHHHHHHHHHHHH---cCCCcceEEEE
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLE---LLPEIERAFVH 308 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~-~~t~~~~~~i~~~i~~~l~---~~~~v~~v~i~ 308 (324)
++++++..+ ++||.. ..+.+.|+.+.|- |+| ..+-.++..++.+|.+.++ .|||-..|||-
T Consensus 461 ~~lE~ia~~-~~gV~~---~yaiqaGREiRvi----V~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 461 RDLEEIANS-FDGVQN---SFALQAGREIRIM----VQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHhc-CCcHHH---HHHHhcCCeEEEE----ecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 344455554 677654 4555668865543 444 4777888999999999995 48886666653
No 120
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=28.84 E-value=1.6e+02 Score=21.75 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=28.7
Q ss_pred ccceeEEEEEeC-CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc
Q 020595 254 RHIDTVRAYTFG-SHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 298 (324)
Q Consensus 254 ~~v~~l~~~~~G-~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~ 298 (324)
.....+++++.. +.+.+++.+.+.+. +......+.+.+++.+.+
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~-~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPP-SSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETT-T-S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCC-CCCCHHHHHHHHHHHHHh
Confidence 456667777775 45889999988554 333446666777777755
No 121
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=28.73 E-value=2.7e+02 Score=22.81 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEe
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 309 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i 309 (324)
.++..+++.+.+.+ .|+|..++. ..|+. +.+.+ .++. . .++.+-+.+.+.+.|+|.++..++
T Consensus 86 ~~~~~~~~~~~l~~-~p~V~~~~~----vtG~~d~~l~v--~~~~---~---~~l~~~l~~~l~~~~gV~~~~t~i 148 (164)
T PRK11169 86 APDVFEQFNAAVQK-LEEIQECHL----VSGDFDYLLKT--RVPD---M---SAYRKLLGETLLRLPGVNDTRTYV 148 (164)
T ss_pred ChHHHHHHHHHHhc-Ccceeeeee----ecCCCCEEEEE--EECC---H---HHHHHHHHHHhhcCCCeeeEEEEE
Confidence 45667788888876 788776653 23553 55444 3432 2 334444556777789998766554
No 122
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=28.28 E-value=4.6e+02 Score=23.84 Aligned_cols=76 Identities=16% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCcccc--eeEEEEEeCCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcC---CCcceEEEEee
Q 020595 237 EYLQKLTYLCWNHHKSIRHI--DTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELL---PEIERAFVHLD 310 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v--~~l~~~~~G~~-~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~---~~v~~v~i~i~ 310 (324)
+..+.+++.+++ .|+|..- ..+.+...|.. +...+..-+++.--.+--.++.+++++.+++. ....+-+++++
T Consensus 200 ~~~~il~~~~~~-~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~ 278 (286)
T PRK10334 200 QVKQILTNIIQS-EDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_pred HHHHHHHHHHHh-CCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence 334444555655 6777532 34677777754 45555554543322233356777888888631 11224566665
Q ss_pred ccc
Q 020595 311 YEY 313 (324)
Q Consensus 311 p~~ 313 (324)
+.+
T Consensus 279 ~~~ 281 (286)
T PRK10334 279 RVK 281 (286)
T ss_pred cCC
Confidence 443
No 123
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=27.76 E-value=1.4e+02 Score=19.78 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc--ceEEEEeecc
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPEI--ERAFVHLDYE 312 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v--~~v~i~i~p~ 312 (324)
+++.+.++.|.++-.++.+.+.+.+.+..++ ..++|-++..
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEe
Confidence 4666777779999999999999999753343 4566666543
No 124
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=27.73 E-value=4.7e+02 Score=28.59 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEe-CCeEEEEEEEEcCCCCCH-HHHHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPL-QEAHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~-G~~~~v~~~i~v~~~~t~-~~~~~i~~~i~~~l~~~~ 300 (324)
+++..+.|.+-+++...++.++++++.... .+.-.+.++.. ++.+. +...++++++.+.-.+.|
T Consensus 54 p~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~--~g~d~~~a~~~V~~~v~~~~~~LP 119 (1037)
T PRK10555 54 AQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFK--AGTDPDEAVQQVQNQLQSAMRKLP 119 (1037)
T ss_pred HHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEE--CCCCHHHHHHHHHHHHHHHHHhCC
Confidence 455666666666666677777888887764 23333333333 33333 223445555544333456
No 125
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=27.25 E-value=2.5e+02 Score=20.43 Aligned_cols=39 Identities=21% Similarity=0.424 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHH-cCCCcc-eEEEE
Q 020595 270 VEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIE-RAFVH 308 (324)
Q Consensus 270 v~~~i~v~~~~t~~~~~~i~~~i~~~l~-~~~~v~-~v~i~ 308 (324)
|++.+.-...++....+.+..++.++|. .+|+.. +|.|.
T Consensus 3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~Vr 43 (81)
T PRK10597 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEEEe
Confidence 3343333345666677889999999997 577763 45554
No 126
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=27.23 E-value=3.3e+02 Score=22.55 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
.|..+.+|...+.+ .| .++..+.+-.....-...+.+.++.+ ++..+++.+.|.+..+|.+|.-
T Consensus 12 ~pGvL~rI~~lf~r--rg-~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 12 EPGVLSRVAGLFSR--RG-YNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred CCcHHHHHHHHHHh--CC-CcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccccEEEEEe
Confidence 35678888888876 34 45666666555422222344444432 3456677777877777766653
No 127
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.97 E-value=1.6e+02 Score=19.71 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCC--cceEEEEeeccc
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPE--IERAFVHLDYEY 313 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~--v~~v~i~i~p~~ 313 (324)
++|.+.+..|.++-.++.+.+.+.+.+..+ -.+++|.++..+
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~ 47 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVP 47 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcC
Confidence 455555556889999999999998864323 335777666543
No 128
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.88 E-value=1.5e+02 Score=32.27 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=36.4
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 268 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 268 ~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
-.+.+.++.+++.++++.+++.+++++.+++.|+|.++...+.
T Consensus 568 ~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 568 GIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred cEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 4467888999999999999999999999987788887776554
No 129
>PRK12704 phosphodiesterase; Provisional
Probab=26.74 E-value=1.6e+02 Score=29.35 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCC-CCCHHHHHHHHHHHHHHHH---cCCCcceEEEE
Q 020595 239 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLE---LLPEIERAFVH 308 (324)
Q Consensus 239 ~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~-~~t~~~~~~i~~~i~~~l~---~~~~v~~v~i~ 308 (324)
.++++++..+ ++||... .+.+.|+.+.| -|+| ..+-.++..++.+|.+.++ .|||-..|||-
T Consensus 445 l~~le~i~~~-~~gv~~~---yaiqaGreirv----~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 445 LEKLEEIANS-FEGVEKA---YAIQAGREIRV----IVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred HHHHHHHHHh-CCcHHHH---HHHhcCceEEE----EeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 3445555554 6777655 44566886543 4444 4777888999999999995 48987666663
No 130
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.49 E-value=1.1e+02 Score=20.71 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=3.5
Q ss_pred ccchhh
Q 020595 6 NEMDAL 11 (324)
Q Consensus 6 ~~~~~~ 11 (324)
+|.|+|
T Consensus 4 SESDnE 9 (60)
T PF06072_consen 4 SESDNE 9 (60)
T ss_pred Cccccc
Confidence 455655
No 131
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.29 E-value=1.6e+02 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=34.6
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 268 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 268 ~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
-.+.++++.+++.++++.+++.+++++.+++.|++.++...
T Consensus 567 ~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~~ 607 (1032)
T PRK09577 567 GNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFAL 607 (1032)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 34578889999999999999999999999877888776543
No 132
>PRK09579 multidrug efflux protein; Reviewed
Probab=26.27 E-value=1.4e+02 Score=32.58 Aligned_cols=71 Identities=6% Similarity=0.022 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEEEe-CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 236 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 236 ~~~~~~i~~~l~~~~~~v~~v~~l~~~~~-G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
++..+++++.+.+ .||+..+ ....... |..-...+.+.+..+-+.++.+++++++++.+++.|++.++...
T Consensus 622 ~~~~~~l~~~l~~-~p~~~~~-~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~ 693 (1017)
T PRK09579 622 MELLPLVQAKLEE-IPGLQIF-GFNLPSLPGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDID 693 (1017)
T ss_pred HHHHHHHHHHHhc-CCCcEEE-eecCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeecc
Confidence 3456677777754 6664321 1111012 21111124444433235788999999999999999998776644
No 133
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=26.26 E-value=2.7e+02 Score=20.50 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEeCCe-EEEEEEEEcCCC-CCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPAS-MPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~-~~v~~~i~v~~~-~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
-+++++.+.+++..+.-......+..-.|=+ ..+.+.+.++.+ -+ .+.+++.+++..+|+++.|.
T Consensus 17 ~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~-------td~lee~i~~~d~VqsveI~ 83 (88)
T cd00292 17 VDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGG-------TDELEEAISEEDGVQSVDVE 83 (88)
T ss_pred cCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcC-------cHHHHHHHhccCCceEEEEE
Confidence 3555555555553444345566666666644 334555555332 22 35667777767888887764
No 134
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=26.01 E-value=2e+02 Score=18.99 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHcCC--CcceEEEEeecc
Q 020595 270 VEVDIVLPASMPLQEAHDIGESLQEKLELLP--EIERAFVHLDYE 312 (324)
Q Consensus 270 v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~--~v~~v~i~i~p~ 312 (324)
+++++. ++..|.++-.++.+.+.+.+.+.. +..+++|.++..
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~ 46 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEM 46 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 344443 356789999999999999986422 234567766543
No 135
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=25.87 E-value=1.9e+02 Score=21.55 Aligned_cols=28 Identities=18% Similarity=0.496 Sum_probs=22.7
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 020595 268 YFVEVDIVLPASMPLQEAHDIGESLQEK 295 (324)
Q Consensus 268 ~~v~~~i~v~~~~t~~~~~~i~~~i~~~ 295 (324)
+.|.+++.++++++.++.+++..+=++.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~~ 30 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKAR 30 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999988887654443
No 136
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=24.78 E-value=4e+02 Score=21.94 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
.+..+.+|...+.+ .| .++..+.+-..+..-...+.+.++.+ ++..+++.+.|.+..+|.+|.-
T Consensus 11 ~pGvL~rI~~lf~r--rg-~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 11 EPGVLSRVAGLFTR--RG-FNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred CCcHHHHHHHHHHh--CC-ceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHHHhcCccEEEEEe
Confidence 45678888888876 34 45667766666522222344444432 3456777788877777766654
No 137
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=24.57 E-value=1.1e+02 Score=25.10 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.1
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeeccc
Q 020595 266 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 313 (324)
Q Consensus 266 ~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 313 (324)
++.+.++.+.+|..+..-| .++++.+++.++. |=.+|+|++++..
T Consensus 27 N~R~Ldi~~rlP~~l~~lE-~~ir~~i~~~l~R--GkV~v~i~~~~~~ 71 (159)
T PF03755_consen 27 NHRFLDISIRLPRELSSLE-PEIRKLIRKKLSR--GKVEVSIRVERSS 71 (159)
T ss_pred ccCceeeEEeCCHHHHHHH-HHHHHHHHHhccc--ceEEEEEEEEECc
Confidence 3456788888887764333 5667777777765 4447888887764
No 138
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.07 E-value=2.4e+02 Score=19.09 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeC-CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG-SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G-~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
.+....+|.+.+.+ .+ .++.++...+.. ....+.+.+++... ++ .+++.+.|++.|+|.
T Consensus 9 ~~g~L~~i~~~i~~--~~-~nI~~v~~~~~~~~~~~~~~~vev~~~---~~----l~~i~~~L~~i~gV~ 68 (74)
T cd04887 9 RPGMLGRVTTAIGE--AG-GDIGAIDLVEQGRDYTVRDITVDAPSE---EH----AETIVAAVRALPEVK 68 (74)
T ss_pred CCchHHHHHHHHHH--cC-CcEEEEEEEEecCCEEEEEEEEEcCCH---HH----HHHHHHHHhcCCCeE
Confidence 34578888888876 23 345666666654 44667788888653 22 334666777778753
No 139
>PRK11670 antiporter inner membrane protein; Provisional
Probab=23.86 E-value=3.3e+02 Score=25.78 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeecc
Q 020595 265 GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 312 (324)
Q Consensus 265 G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 312 (324)
|....+++.+..+.. ...+.+.+++++.+++.+++..+.+.+...
T Consensus 46 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (369)
T PRK11670 46 DDTLHIELVMPFVWN---SAFEELKEQCSAELLRITGAKAIDWKLSHN 90 (369)
T ss_pred CCEEEEEEEECCCCc---hHHHHHHHHHHHHHHhcCCCceEEEEEeee
Confidence 454555555544322 344678999999999989998888887654
No 140
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.82 E-value=83 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred cCCCCccccCCC
Q 020595 313 YTHRPEHAQAHY 324 (324)
Q Consensus 313 ~~~~~~~~~~~~ 324 (324)
....++.+||||
T Consensus 58 ~~~~~~~~PPHY 69 (69)
T PF04102_consen 58 ADPPEEEPPPHY 69 (69)
T ss_dssp ------------
T ss_pred CCCCCCCCcCCC
Confidence 566778899999
No 141
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=23.72 E-value=2.8e+02 Score=19.92 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 238 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 238 ~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
.=+.|++.+.+ -|..+|.++|+ |..+ ++.+..+ +.+++.+..+++-+.|-..|-+.+-.+.++
T Consensus 17 qG~ai~~al~~--lG~~~v~~Vr~---GK~~--~l~~~~~---~~e~a~~~v~~i~~~LLaNpvie~y~i~~~ 79 (80)
T PF02700_consen 17 QGEAIKRALHR--LGYDGVKDVRV---GKYI--ELELEAD---DEEEAEEQVEEICEKLLANPVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHHH--TT-TTEEEEEE---EEEE--EEEEE-S---SHHHHHHHHHHHHHHTTS-TTTEEEEEEEE
T ss_pred HHHHHHHHHHH--cCCcccCcEEE---EEEE--EEEEeCC---CHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 34567777765 37777778777 4443 3444333 456777777777666655578888777764
No 142
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=23.60 E-value=1.3e+02 Score=22.28 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCc
Q 020595 270 VEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 302 (324)
Q Consensus 270 v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v 302 (324)
.+++|..+..++.+++.+..+++-+.+++.+++
T Consensus 2 ~~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~ 34 (91)
T TIGR02610 2 SSISVERDHSLGPAAARAKAEDLARKLTDRYGL 34 (91)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 368899999999999999999998888866665
No 143
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.54 E-value=4e+02 Score=29.12 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=29.8
Q ss_pred EEEeCCeEEEEEEEEcC-CCCCHHHHHH-HHHHHHHHHHcCCCcceEEE
Q 020595 261 AYTFGSHYFVEVDIVLP-ASMPLQEAHD-IGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 261 ~~~~G~~~~v~~~i~v~-~~~t~~~~~~-i~~~i~~~l~~~~~v~~v~i 307 (324)
....++...+.+.+.-+ +..+.++..+ ..++++..|++.|||.+|.+
T Consensus 129 ~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~ 177 (1044)
T TIGR00915 129 VEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQL 177 (1044)
T ss_pred EeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEe
Confidence 33333333344444433 2357777776 44679999999999988764
No 144
>PRK04435 hypothetical protein; Provisional
Probab=23.36 E-value=4e+02 Score=21.49 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEE-eCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEE
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYT-FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~-~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i 307 (324)
.+....+|.+.+.+.--. +..+.... .++...+.+.+++.+. ..-.+++-+.|++.++|.+|.+
T Consensus 79 r~GlLs~Il~~IA~~~aN---IltI~q~i~~~g~a~vs~tVevs~~------~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 79 RSGTLSKVLNVIAEAGGN---ILTINQSIPLQGRANVTISIDTSSM------EGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred CCCHHHHHHHHHHHcCCC---eEEEEEEcCCCCEEEEEEEEEeCCh------HHHHHHHHHHHHcCCCcEEEEE
Confidence 356788888888773223 33333221 1233556666666432 2245677788888899987765
No 145
>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=4.6e+02 Score=22.14 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE----eecccCCCCc-cccCC
Q 020595 265 GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH----LDYEYTHRPE-HAQAH 323 (324)
Q Consensus 265 G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~----i~p~~~~~~~-~~~~~ 323 (324)
|+.-.+-+.+-++ -+...+++--++-+.|++.+.-.||.+- +.|.+..... .+.||
T Consensus 56 Gg~Kaivi~VP~p---~lk~fqki~~~LvreleKKF~gk~Vifia~Rrilpkp~rks~~qKRpr 116 (192)
T KOG3320|consen 56 GGRKAIVIFVPVP---QLKAFQKIQVRLVRELEKKFSGKHVIFIAQRRILPKPTRKSRTQKRPR 116 (192)
T ss_pred CCcEEEEEEechH---HHHHHHHHHHHHHHHHHHhcCCceEEEEEeeeeccCCCCCcccccCCc
Confidence 4455555555444 3466688888888899765666676654 5565554444 25554
No 146
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=23.25 E-value=2.7e+02 Score=19.39 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHc
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 298 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~ 298 (324)
.|....++.+.+.+ . | -++.+++....|+.....+.+..+++ ...++.+.+++.-++
T Consensus 12 rpGiv~~v~~~l~~-~-g-~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 12 RPGIVAAVTGVLAE-H-G-CNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEE 68 (76)
T ss_dssp -TTHHHHHHHHHHC-T-T--EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH-C-C-CcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHH
Confidence 45678888888876 3 3 57889999999999888899988832 334444444444443
No 147
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=23.22 E-value=1.2e+02 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEee
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 310 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 310 (324)
+.+++++.+|.++..++.+.+++.+++.+.+ ++.+.++
T Consensus 3 l~v~~~g~~t~ed~~~~~~~~~~~~~~~~~~-~ll~d~~ 40 (109)
T PF11964_consen 3 LAVRVSGKLTEEDYKELLPALEELIADHGKI-RLLVDLR 40 (109)
T ss_dssp EEEEEEEEE-HHHHHHHHHHHHHHHTTSSSE-EEEEEEC
T ss_pred EEEEEeeeeCHHHHHHHHHHHHHHHhcCCce-EEEEEec
Confidence 4566778889999999999999998764443 5666655
No 148
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=3.6e+02 Score=20.93 Aligned_cols=76 Identities=9% Similarity=-0.058 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020595 47 FAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 124 (324)
Q Consensus 47 ~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~s 124 (324)
-++.++.|++.|+..|..--.--+.-.++++++..-..--.|-..+ .||-.-.-.=-++..++.++.+...+.++.
T Consensus 50 QVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEe--e~GG~weL~kEGf~asfa~FlvtWIi~Yt~ 125 (129)
T KOG3415|consen 50 QVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEE--EYGGHWELLKEGFMASFALFLVTWIIFYTL 125 (129)
T ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHH--HhCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666677666644444444444554444322222333222 345433222234555555555555555543
No 149
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=23.14 E-value=1.6e+02 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCcccceeEEEEEeCCeEEEEEEEEcCC
Q 020595 251 KSIRHIDTVRAYTFGSHYFVEVDIVLPA 278 (324)
Q Consensus 251 ~~v~~v~~l~~~~~G~~~~v~~~i~v~~ 278 (324)
.|-..|.+.++++.|+.++|++.+.+++
T Consensus 27 ~g~i~v~~~~~~~~gd~L~V~m~idl~~ 54 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSLHVDMDIDLSG 54 (115)
T ss_pred CCcEEEEeeEEEEECCEEEEEEEEEecc
Confidence 4557788999999999999999999865
No 150
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.76 E-value=2.8e+02 Score=19.42 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHH
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKL 296 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~---t~~~~~~i~~~i~~~l 296 (324)
.+....++.+.+.+ .+ .+|++.++....+...++.-...+++- +.++.+++.+.+++.|
T Consensus 10 r~gLfa~i~~~l~~--~~-l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 10 RKGLLHDVTEVLYE--LE-LTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CCCHHHHHHHHHHH--CC-CeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35677888888876 34 678999998643334444444445542 2234444555554444
No 151
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=22.62 E-value=6e+02 Score=23.98 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCC----CHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 240 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM----PLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 240 ~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~----t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
.+|++.+.+ .|+|.....+.....|..-.+.+.++++++. ..++...+.+++++.+++..++. ..|++.+
T Consensus 331 ~eie~~l~~-~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~~~ 404 (422)
T TIGR02155 331 TQLEEVILK-MDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVS-MDVHLVE 404 (422)
T ss_pred HHHHHHHHh-CcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcE-EEEEEEC
Confidence 467777776 7888655566555555333455555555432 12334455677878887544543 4566553
No 152
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=22.49 E-value=2.4e+02 Score=20.85 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=25.8
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 020595 269 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 303 (324)
Q Consensus 269 ~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~ 303 (324)
.+.+++.++..-|+++=-.+.+.+.+++++.+++.
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS 38 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS 38 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE
Confidence 36778888988899999999999999999777874
No 153
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=22.28 E-value=4.3e+02 Score=28.87 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCCHHHHHH-HHHHHHHHHHcCCCcceEEE
Q 020595 279 SMPLQEAHD-IGESLQEKLELLPEIERAFV 307 (324)
Q Consensus 279 ~~t~~~~~~-i~~~i~~~l~~~~~v~~v~i 307 (324)
..+.++..+ ..++++..|++.+||.+|.+
T Consensus 148 ~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~ 177 (1037)
T PRK10555 148 SMDKQDIADYVASNIQDPLSRVNGVGDIDA 177 (1037)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 467778777 56889999999999988765
No 154
>PRK00701 manganese transport protein MntH; Reviewed
Probab=22.25 E-value=7.3e+02 Score=24.10 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=15.4
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 020595 96 IGKKRMQPLGILVFASVMATLG 117 (324)
Q Consensus 96 ~G~~r~E~l~~l~~~~~l~~~~ 117 (324)
.||.|+|.+...+++++.+...
T Consensus 163 ~~y~~~E~i~~~lv~~m~l~f~ 184 (439)
T PRK00701 163 RGFRPLEAIIGGLLLVIAAAFI 184 (439)
T ss_pred cCccHHHHHHHHHHHHHHHHHH
Confidence 3799999998766665554443
No 155
>PRK04406 hypothetical protein; Provisional
Probab=22.20 E-value=1e+02 Score=21.98 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=8.8
Q ss_pred cCCCCccccCCC
Q 020595 313 YTHRPEHAQAHY 324 (324)
Q Consensus 313 ~~~~~~~~~~~~ 324 (324)
.....+.+||||
T Consensus 64 ~~~~~e~pPPHY 75 (75)
T PRK04406 64 ADPAEETPPPHY 75 (75)
T ss_pred CCCCCCCCccCC
Confidence 345567889999
No 156
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=22.07 E-value=2.1e+02 Score=30.59 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=34.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEEeec
Q 020595 272 VDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 311 (324)
Q Consensus 272 ~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 311 (324)
......|..+++++.+..+.+++.+++.|+|.+|.-..-.
T Consensus 562 ~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~V~~k~Gr 601 (1027)
T COG3696 562 YMPLTIPGVSLDEALRMLQAIERAIKKFPEVERVFGKTGR 601 (1027)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhcCcchheeeecccc
Confidence 3455678899999999999999999999999998877643
No 157
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.99 E-value=3.2e+02 Score=19.85 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHH
Q 020595 32 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFT 82 (324)
Q Consensus 32 ~~~~~~~s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~ 82 (324)
..+..|++++..+++.+-.+ .+ ++|=.+....-...+.+.++.++++++
T Consensus 9 kN~~~w~ali~~i~l~vq~~-~~-~fg~~~~~~~~~~~i~~~v~~vl~iL~ 57 (84)
T PF04531_consen 9 KNKAFWVALISAILLLVQQV-GG-LFGWGADFDVLLDQISNIVNAVLTILV 57 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HH-HhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44566777766555554443 33 444434444444555555555555443
No 158
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.88 E-value=4e+02 Score=20.93 Aligned_cols=52 Identities=13% Similarity=-0.066 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020595 39 SNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPN 90 (324)
Q Consensus 39 s~~~~~~~~i~~~~~g~~~~S~aL~ada~hs~~D~~~~~~~l~~~~~s~r~~ 90 (324)
+.++..++-++-+++|...++.....|.+--+.-++..++.++..+.-.|..
T Consensus 70 aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333444444445555555555555477777777777777777777665544
No 159
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=21.74 E-value=3.4e+02 Score=20.06 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCC
Q 020595 72 DLLSGFILWFTAFSMQTPNPYQYPI 96 (324)
Q Consensus 72 D~~~~~~~l~~~~~s~r~~~~~~p~ 96 (324)
-++..+....+...+.+..+.+||+
T Consensus 80 ~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 80 WLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCeeecCe
Confidence 3444556667777888887778886
No 160
>PHA02568 J baseplate assembly protein; Provisional
Probab=20.87 E-value=4.6e+02 Score=24.08 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCccccee-EEEEEeCC-eEEEEEEEEcCCCCCH
Q 020595 232 RSAAPEYLQKLTYLCWNHHKSIRHIDT-VRAYTFGS-HYFVEVDIVLPASMPL 282 (324)
Q Consensus 232 ~~~~~~~~~~i~~~l~~~~~~v~~v~~-l~~~~~G~-~~~v~~~i~v~~~~t~ 282 (324)
..|+++..+++++.+.. ++++-+.+ +.+..-.. .+.+++++.+.++...
T Consensus 179 G~ps~~Ll~~V~~~l~~--e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~ 229 (300)
T PHA02568 179 GTASEDLLAAVRAALNR--EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDS 229 (300)
T ss_pred CCCCHHHHHHHHHHhcc--cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCCh
Confidence 35899999999999953 55665544 33333222 3667888887665543
No 161
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=20.81 E-value=9.4e+02 Score=26.37 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEe-CCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~-G~~~~v~~~i~v~~~~t~~~-~~~i~~~i~~~l~~~~ 300 (324)
+++..+.|.+-+++...++.++++++.... .+.-.+.++.. ++.+.++ ..++++++.+.-.+.|
T Consensus 54 p~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~--~g~d~~~a~~~V~~~i~~~~~~LP 119 (1049)
T PRK15127 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFE--SGTDADIAQVQVQNKLQLAMPLLP 119 (1049)
T ss_pred HHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEE--CCCChHHHHHHHHHHHHHHHhhCC
Confidence 566777777777776777888888888764 23333333333 3333322 2345555544333466
No 162
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=20.73 E-value=5.1e+02 Score=28.32 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEE--eCCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHcCCCcceEEEE
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYT--FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 308 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~--~G~~~~v~~~i~v~~~~t~~~~~~i~~~i~~~l~~~~~v~~v~i~ 308 (324)
+..+++.++-.+ .|.- +..-.+.+ .++.....+.+.-+..-..+..+...+.+++.|++.+||.+|.+.
T Consensus 106 ~V~~kv~~~~~~-LP~~--~~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~ 176 (1009)
T COG0841 106 QVQNKIQQAESR-LPSG--VQQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLF 176 (1009)
T ss_pred HHHHHHHHHHhc-CCCc--cCCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 344455444433 5542 34434443 445566666666544434566677777899999999999887643
No 163
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=20.63 E-value=3e+02 Score=23.38 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCC----CCCHHHHHHHHHHHHHHHH-cCC--CcceEEEEe
Q 020595 237 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA----SMPLQEAHDIGESLQEKLE-LLP--EIERAFVHL 309 (324)
Q Consensus 237 ~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~----~~t~~~~~~i~~~i~~~l~-~~~--~v~~v~i~i 309 (324)
...++|.+.+.+ ... .-+-.+-.....+++.|..+| +++.++..+..+..-+.++ +++ +|..+.+|.
T Consensus 54 ~~~~~I~~~~~~-~~~-----~~~k~Rkdav~~~e~iit~~~e~~~~~~~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~ 127 (196)
T PF01076_consen 54 RYDRRIKDYIEK-IKN-----SKRKIRKDAVLAIEFIITASPEFFNDLDPEQQKRWFEDSLEWLQERYGNENIVSAVVHL 127 (196)
T ss_pred cHHHHHHHHHHh-hhh-----ccccccccceeEEEEEEeCChHHhcchhhHHHHHHHHHHHHHHHHHCCchhEEEEEEEC
Confidence 445556655544 211 112333344566788887776 4567778888888888886 455 577788998
Q ss_pred ecc
Q 020595 310 DYE 312 (324)
Q Consensus 310 ~p~ 312 (324)
|..
T Consensus 128 DE~ 130 (196)
T PF01076_consen 128 DET 130 (196)
T ss_pred CCC
Confidence 764
No 164
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.22 E-value=6.2e+02 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 020595 200 DWMDPVGAIILALYTIRTWSMTVLE 224 (324)
Q Consensus 200 ~~~D~i~si~i~~~i~~~~~~~~~~ 224 (324)
.-+||.-+++.+++....+.-+.+.
T Consensus 120 R~v~~~~ai~yt~~s~~~Ca~~~~~ 144 (314)
T COG3965 120 REVEPGHAIAYTLVSVTGCAAIAWK 144 (314)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 6788888887777766555544443
No 165
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.13 E-value=6.2e+02 Score=27.70 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEEEeCCeEEEEEEEEcCCCCCHHHH-HHHHHHHHHHHHcCC
Q 020595 235 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEA-HDIGESLQEKLELLP 300 (324)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~v~~v~~l~~~~~G~~~~v~~~i~v~~~~t~~~~-~~i~~~i~~~l~~~~ 300 (324)
+++..+++.+-+++...++.++++++.....+. ..+.++++++.+..++ .++++++.+.-.+.|
T Consensus 58 ~~~ve~~vt~piE~~l~~v~gv~~v~S~s~~g~--s~i~v~f~~~~d~~~a~~~v~~~v~~~~~~LP 122 (1051)
T TIGR00914 58 PLEVEQRVTYPIETAMAGLPGLETTRSLSRYGL--SQVTVIFKDGTDLYFARQLVNERLQQARDNLP 122 (1051)
T ss_pred HHHHHHHcCHHHHHHhcCCCCeeEEEEEccCce--EEEEEEEeCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 445555555555554555566666665543332 3334444444433322 455555554333455
Done!