BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020596
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q37|A Chain A, Crystal Structure Of Ohcu Decarboxylase In The Presence Of
(S)-Allantoin
Length = 181
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/140 (57%), Positives = 100/140 (71%), Gaps = 11/140 (7%)
Query: 16 CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP------ 69
CCGS++FAK+ +++ P S +A+ AR IWFN V+V WL+AFSAHPQIG +P
Sbjct: 33 CCGSSEFAKQXSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINS 91
Query: 70 ----WSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRY 125
S +EQSTA AT + S+ QEL++WN Y+ +FGFIFIICASGRT AE L LK+RY
Sbjct: 92 DFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEXLHALKERY 151
Query: 126 TNRPIIEFEIAAQEQMKITE 145
NRPI+E EIAA EQ KITE
Sbjct: 152 ENRPIVELEIAAXEQXKITE 171
>pdb|3IWV|A Chain A, Crystal Structure Of Y116t Mutant Of 5-Hydroxyisourate
Hydrolase (Trp)
pdb|3IWV|B Chain B, Crystal Structure Of Y116t Mutant Of 5-Hydroxyisourate
Hydrolase (Trp)
pdb|3IWV|C Chain C, Crystal Structure Of Y116t Mutant Of 5-Hydroxyisourate
Hydrolase (Trp)
pdb|3IWV|D Chain D, Crystal Structure Of Y116t Mutant Of 5-Hydroxyisourate
Hydrolase (Trp)
Length = 138
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 174 DRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQP 233
+R+ I GH+ SA K + P++THVL+++QG P A + + L +
Sbjct: 2 NRLQHIRGHI-----VSADKHINMSATLLSPLSTHVLNIAQGVPGANMTIVLHRLDPVS- 55
Query: 234 RPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY----CPEGFF 289
S W + TN DGRC L+ E+ G YK+ F TGKY F+
Sbjct: 56 ---------SAWNILTTGITNDDGRCPGLITK-ENFIAGVYKMRFETGKYWDALGETCFY 105
Query: 290 PYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324
PYV IVF I + +H+HVPLLLS FS++T RGS
Sbjct: 106 PYVEIVFTITNTS--QHYHVPLLLSRFSYSTTRGS 138
>pdb|2H1X|A Chain A, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H1X|B Chain B, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H1X|C Chain C, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H1X|D Chain D, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|A Chain A, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|B Chain B, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|C Chain C, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|D Chain D, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|E Chain E, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|F Chain F, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|G Chain G, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
pdb|2H6U|H Chain H, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly
Known As Trp, Transthyretin Related Protein)
Length = 119
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P++THVL+++QG P A + + L + S W + TN DGRC L+
Sbjct: 8 PLSTHVLNIAQGVPGANMTIVLHRLDPVS----------SAWNILTTGITNDDGRCPGLI 57
Query: 264 GMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFT 319
E+ G YK+ F TGKY F+PYV IVF I + +H+HVPLLLS FS++
Sbjct: 58 TK-ENFIAGVYKMRFETGKYWDALGETCFYPYVEIVFTI--TNTSQHYHVPLLLSRFSYS 114
Query: 320 TYRGS 324
TYRGS
Sbjct: 115 TYRGS 119
>pdb|3IWU|A Chain A, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|B Chain B, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|C Chain C, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|D Chain D, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|E Chain E, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|F Chain F, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|G Chain G, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
pdb|3IWU|H Chain H, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase
Length = 138
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 22/155 (14%)
Query: 174 DRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQP 233
+R+ I GH+ SA K + P++THVL+ +QG P A + + L +
Sbjct: 2 NRLQHIRGHI-----VSADKHINMSATLLSPLSTHVLNAAQGVPGANMTIVLHRLDPVS- 55
Query: 234 RPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY----CPEGFF 289
S W + TN DGRC L+ E+ G YK+ F TGKY F+
Sbjct: 56 ---------SAWNILTTGITNDDGRCPGLITK-ENFIAGVYKMRFETGKYWDALGETCFY 105
Query: 290 PYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324
PYV IVF I + +H+HVPLLLS FS++T RGS
Sbjct: 106 PYVEIVFTITNTS--QHYHVPLLLSRFSYSTTRGS 138
>pdb|3Q1E|A Chain A, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase In Complex With T4
pdb|3Q1E|B Chain B, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase In Complex With T4
pdb|3Q1E|C Chain C, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase In Complex With T4
pdb|3Q1E|D Chain D, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF
5-Hydroxyisourate Hydrolase In Complex With T4
Length = 119
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 17/125 (13%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P++THVL+ +QG P A + + L + S W + TN DGRC L+
Sbjct: 8 PLSTHVLNAAQGVPGANMTIVLHRLDPVS----------SAWNILTTGITNDDGRCPGLI 57
Query: 264 GMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFT 319
E+ G YK+ F TGKY F+PYV IVF I + +H+HVPLLLS FS++
Sbjct: 58 TK-ENFIAGVYKMRFETGKYWDALGETCFYPYVEIVFTI--TNTSQHYHVPLLLSRFSYS 114
Query: 320 TYRGS 324
T RGS
Sbjct: 115 TTRGS 119
>pdb|2GPZ|A Chain A, Transthyretin-Like Protein From Salmonella Dublin
pdb|2GPZ|C Chain C, Transthyretin-Like Protein From Salmonella Dublin
Length = 111
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
++ H+LD G PA GVEV LE K +GW + T++DGR L
Sbjct: 3 LSVHILDQQTGKPAPGVEVVLEQKKD------------NGWTQLNTGHTDQDGRIKALWP 50
Query: 265 MIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT 320
+ PG Y++ F TG+Y + FFP + + F I S+ EH+HVPLLLS + ++T
Sbjct: 51 E-KAAAPGDYRVIFKTGQYFESKKLDTFFPEIPVEFHI--SKTNEHYHVPLLLSQYGYST 107
Query: 321 YRGS 324
YRGS
Sbjct: 108 YRGS 111
>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|B Chain B, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|C Chain C, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|D Chain D, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2P|A Chain A, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|B Chain B, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|C Chain C, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|D Chain D, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
Length = 114
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
++ H+L+ G PAA V V LE + D +GW+ ++ T+KDGR L
Sbjct: 6 LSVHILNQQTGKPAADVTVTLEK-----------KAD-NGWLQLNTAKTDKDGRIKALWP 53
Query: 265 MIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT 320
+ G Y++ F TG Y E FFP + + F I ++ EH+HVPLLLS + ++T
Sbjct: 54 E-QTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHI--NKVNEHYHVPLLLSQYGYST 110
Query: 321 YRGS 324
YRGS
Sbjct: 111 YRGS 114
>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|B Chain B, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|C Chain C, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|D Chain D, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
Length = 118
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 19/124 (15%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
++ H+L+ G PAA V V LE + +GW+ ++ T+KDGR L
Sbjct: 10 LSVHILNQQTGKPAADVTVTLE------------KKADNGWLQLNTAKTDKDGRIKALWP 57
Query: 265 MIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT 320
+ G Y++ F TG Y E FFP + + F I ++ EH+HVPLLLS + ++T
Sbjct: 58 E-QTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHI--NKVNEHYHVPLLLSQYGYST 114
Query: 321 YRGS 324
YRGS
Sbjct: 115 YRGS 118
>pdb|2H0E|A Chain A, Crystal Structure Of Pucm In The Absence Of Substrate
pdb|2H0E|B Chain B, Crystal Structure Of Pucm In The Absence Of Substrate
pdb|2H0F|A Chain A, Crystal Structure Of Pucm In The Presence Of 8-Azaxanthine
pdb|2H0F|B Chain B, Crystal Structure Of Pucm In The Presence Of 8-Azaxanthine
pdb|2H0J|A Chain A, Crystal Structure Of Pucm In The Presence Of 5,6-
Diaminouracil
pdb|2H0J|B Chain B, Crystal Structure Of Pucm In The Presence Of 5,6-
Diaminouracil
Length = 121
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 25/128 (19%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
+TTH+LD++ G PAA V++ L+ GE+ + VY TN DGR +
Sbjct: 11 LTTHILDLTCGKPAANVKIGLKR---------LGES-IXKEVY-----TNNDGRVDVPLL 55
Query: 265 MIEDLNPGFYKITFNTGKY--------CPEGFFPYVSIVFEIRESQKREHFHVPLLLSPF 316
E+L G Y F+ G Y + F V++ F++ + H+H+PLLLSPF
Sbjct: 56 AGEELXSGEYVXEFHAGDYFASKNXNAADQPFLTIVTVRFQLADPDA--HYHIPLLLSPF 113
Query: 317 SFTTYRGS 324
+ YRGS
Sbjct: 114 GYQVYRGS 121
>pdb|3O7H|A Chain A, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
pdb|3O7H|B Chain B, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
pdb|3O7I|A Chain A, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
pdb|3O7I|B Chain B, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
pdb|3O7J|A Chain A, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
pdb|3O7K|A Chain A, Crystal Structure Of
2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline
Decarboxylase From Klebsiella Pneumoniae
Length = 189
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 16 CCGSTKFAKEMASASPFASLNQAVSAARHIWFN--LVDVNGWLDAFSAHPQIGQSP---- 69
C + + + S PFAS + + AR N ++N A SAHP+IG+ P
Sbjct: 45 CVALPAWGETLVSLRPFASRHALLQTAREAMANWGEDELNA---ALSAHPRIGEKPTGSQ 101
Query: 70 ----WSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRY 125
S+ EQS+ + + NE +Q L + N RY RFG +F+I A GR+ EIL L +R
Sbjct: 102 AHAALSRQEQSS-VDSENERLAQALREGNARYEARFGRVFLIRAKGRSGEEILQALTRRL 160
Query: 126 TN 127
+
Sbjct: 161 QH 162
>pdb|3QVA|A Chain A, Structure Of Klebsiella Pneumoniae 5-Hydroxyisourate
Hydrolase
pdb|3QVA|B Chain B, Structure Of Klebsiella Pneumoniae 5-Hydroxyisourate
Hydrolase
pdb|3QVA|C Chain C, Structure Of Klebsiella Pneumoniae 5-Hydroxyisourate
Hydrolase
pdb|3QVA|D Chain D, Structure Of Klebsiella Pneumoniae 5-Hydroxyisourate
Hydrolase
Length = 116
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
++TH+LD+S G+PA GV V L GET + TN GR
Sbjct: 12 LSTHILDISTGTPAEGVTVSLSRE---------GET-------LANLVTNAQGRIATFSA 55
Query: 265 MIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT 320
L G Y +T TG + E F I F I E+ + +HFH+P L++P ++T
Sbjct: 56 A--PLPAGRYCLTAETGAWFARAGRESVFTRAQIDFVIGEAAE-DHFHLPFLIAPGGWST 112
Query: 321 YRGS 324
YRGS
Sbjct: 113 YRGS 116
>pdb|2O70|A Chain A, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|B Chain B, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|C Chain C, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|D Chain D, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|E Chain E, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|F Chain F, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O73|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O74|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Guanine
Length = 174
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 SPWSKAEQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYT 126
+P S+ EQS A + T + + + N+ Y+ RFGF F+ICA A+I+ +L +R
Sbjct: 81 TPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFVICARLNNKADIVRQLSERLK 140
Query: 127 NRPIIEFEIAAQEQMKI 143
NR E E A +E KI
Sbjct: 141 NRRTAELECAIEEVKKI 157
>pdb|1SN0|A Chain A, Crystal Structure Of Sea Bream Transthyretin In Complex
With Thyroxine At 1.9a Resolution
pdb|1SN0|B Chain B, Crystal Structure Of Sea Bream Transthyretin In Complex
With Thyroxine At 1.9a Resolution
pdb|1SN0|C Chain C, Crystal Structure Of Sea Bream Transthyretin In Complex
With Thyroxine At 1.9a Resolution
pdb|1SN0|D Chain D, Crystal Structure Of Sea Bream Transthyretin In Complex
With Thyroxine At 1.9a Resolution
pdb|1SN2|A Chain A, Crystal Structure Of Sea Bream Transthyretin At 1.90a
Resolution
pdb|1SN2|B Chain B, Crystal Structure Of Sea Bream Transthyretin At 1.90a
Resolution
pdb|1SN2|C Chain C, Crystal Structure Of Sea Bream Transthyretin At 1.90a
Resolution
pdb|1SN2|D Chain D, Crystal Structure Of Sea Bream Transthyretin At 1.90a
Resolution
pdb|1SN5|A Chain A, Crystal Structure Of Sea Bream Transthyretin In Complex
With Triiodothyronine At 1.90a Resolution
pdb|1SN5|B Chain B, Crystal Structure Of Sea Bream Transthyretin In Complex
With Triiodothyronine At 1.90a Resolution
pdb|1SN5|C Chain C, Crystal Structure Of Sea Bream Transthyretin In Complex
With Triiodothyronine At 1.90a Resolution
pdb|1SN5|D Chain D, Crystal Structure Of Sea Bream Transthyretin In Complex
With Triiodothyronine At 1.90a Resolution
Length = 130
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 201 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260
TR P+ +LD +G+PA V +++ +T GW + T+ G
Sbjct: 11 TRCPLMVKILDAVKGTPAGSVALKVSQ-----------KTADGGWTQIATGVTDATGEIH 59
Query: 261 QLMGMIEDLNPGFYKITFNTGKY-CPEGFFPY---VSIVFEIRESQKREHFHVPLLLSPF 316
L+ + G Y++ F+T Y +G P+ +VF+ R H+ + LLLSPF
Sbjct: 60 NLI-TEQQFPAGVYRVEFDTKAYWTNQGSTPFHEVAEVVFDAHPEGHR-HYTLALLLSPF 117
Query: 317 SFTT 320
S+TT
Sbjct: 118 SYTT 121
>pdb|1TFP|A Chain A, Transthyretin (Formerly Known As Prealbumin)
pdb|1TFP|B Chain B, Transthyretin (Formerly Known As Prealbumin)
Length = 130
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 194 ISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTT 253
+S ++ P+ VLD +GSPAA V V+ +F + W + T
Sbjct: 4 VSHGSVDSKCPLMVKVLDAVRGSPAANVAVK-----------VFKKAADGTWQDFATGKT 52
Query: 254 NKDGRCGQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHV 309
+ G +L E G Y++ F+T Y F Y +VF +S R H+ +
Sbjct: 53 TEFGEIHELTTE-EQFVEGVYRVEFDTSSYWKGLGLSPFHEYADVVFTANDSGHR-HYTI 110
Query: 310 PLLLSPFSFTT 320
LLSPFS++T
Sbjct: 111 AALLSPFSYST 121
>pdb|1GKE|A Chain A, Rat Transthyretin
pdb|1GKE|B Chain B, Rat Transthyretin
pdb|1GKE|C Chain C, Rat Transthyretin
pdb|1GKE|D Chain D, Rat Transthyretin
Length = 120
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 201 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260
++ P+ VLD +GSPA V V+ +F +T W S K G
Sbjct: 1 SKCPLMVKVLDAVRGSPAVDVAVK-----------VFKKTADGSWEPFAS---GKTAESG 46
Query: 261 QLMGMIED--LNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLS 314
+L G+ D G Y++ +T Y F Y +VF +S R H+ + LLS
Sbjct: 47 ELHGLTTDEKFTEGVYRVELDTKSYWKALGISPFHEYAEVVFTANDSGHR-HYTIAALLS 105
Query: 315 PFSFTT 320
P+S++T
Sbjct: 106 PYSYST 111
>pdb|1IE4|A Chain A, Rat Transthyretin Complex With Thyroxine (T4)
pdb|1IE4|B Chain B, Rat Transthyretin Complex With Thyroxine (T4)
pdb|1IE4|C Chain C, Rat Transthyretin Complex With Thyroxine (T4)
pdb|1IE4|D Chain D, Rat Transthyretin Complex With Thyroxine (T4)
pdb|1KGI|A Chain A, Rat Transthyretin (Also Called Prealbumin) Complex With 3,
3',5,5'-Tetraiodothyroacetic Acid (T4ac)
pdb|1KGI|B Chain B, Rat Transthyretin (Also Called Prealbumin) Complex With 3,
3',5,5'-Tetraiodothyroacetic Acid (T4ac)
pdb|1KGI|C Chain C, Rat Transthyretin (Also Called Prealbumin) Complex With 3,
3',5,5'-Tetraiodothyroacetic Acid (T4ac)
pdb|1KGI|D Chain D, Rat Transthyretin (Also Called Prealbumin) Complex With 3,
3',5,5'-Tetraiodothyroacetic Acid (T4ac)
pdb|1KGJ|A Chain A, Rat Transthyretin (Also Called Prealbumin) Complex With
3', 5'-Dibromoflavone (Emd21388)
pdb|1KGJ|B Chain B, Rat Transthyretin (Also Called Prealbumin) Complex With
3', 5'-Dibromoflavone (Emd21388)
pdb|1KGJ|C Chain C, Rat Transthyretin (Also Called Prealbumin) Complex With
3', 5'-Dibromoflavone (Emd21388)
pdb|1KGJ|D Chain D, Rat Transthyretin (Also Called Prealbumin) Complex With
3', 5'-Dibromoflavone (Emd21388)
Length = 127
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V+ +F +T W S K
Sbjct: 7 ESKCPLMVKVLDAVRGSPAVDVAVK-----------VFKKTADGSWEPFAS---GKTAES 52
Query: 260 GQLMGMIED--LNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ D G Y++ +T Y F Y +VF +S R H+ + LL
Sbjct: 53 GELHGLTTDEKFTEGVYRVELDTKSYWKALGISPFHEYAEVVFTANDSGHR-HYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1OO2|A Chain A, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|B Chain B, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|C Chain C, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|D Chain D, Crystal Structure Of Transthyretin From Sparus Aurata
Length = 119
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 261
R P+ +LD +G+PA V +++ +T GW + T+ G
Sbjct: 1 RCPLMVKILDAVKGTPAGSVALKVSQ-----------KTADGGWTQIATGVTDATGEIHN 49
Query: 262 LMGMIEDLNPGFYKITFNTGKY-CPEGFFPY---VSIVFEIRESQKREHFHVPLLLSPFS 317
L+ + G Y++ F+T Y +G P+ +VF+ + H+ + LLLSPFS
Sbjct: 50 LI-TEQQFPAGVYRVEFDTKAYWTNQGSTPFHEVAEVVFDAH-PEGHGHYTLALLLSPFS 107
Query: 318 FTT 320
+TT
Sbjct: 108 YTT 110
>pdb|2QPF|A Chain A, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|B Chain B, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|C Chain C, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|D Chain D, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|E Chain E, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|F Chain F, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|G Chain G, Crystal Structure Of Mouse Transthyretin
pdb|2QPF|H Chain H, Crystal Structure Of Mouse Transthyretin
Length = 128
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V+ +F +T W S K
Sbjct: 8 ESKXPLMVKVLDAVRGSPAVDVAVK-----------VFKKTSEGSWEPFAS---GKTAES 53
Query: 260 GQLMGMIED--LNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ D G Y++ +T Y F + +VF +S R H+ + LL
Sbjct: 54 GELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHR-HYTIAALL 112
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 113 SPYSYST 119
>pdb|1X7T|A Chain A, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
pdb|1X7T|B Chain B, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
Length = 127
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R H+ + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-HYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s
pdb|3BT0|B Chain B, Crystal Structure Of Transthyretin Variant V20s
Length = 127
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD S+GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDASRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1BZD|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZD|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 199 TRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGR 258
+ ++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 6 SESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE--- 51
Query: 259 CGQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLL 312
G+L G+ E+ G YK+ +T Y F + +VF +S R + + L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAAL 110
Query: 313 LSPFSFTT 320
LSP+S++T
Sbjct: 111 LSPYSYST 118
>pdb|2G3Z|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G3Z|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G4E|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
pdb|2G4E|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
Length = 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKY----CPEGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGASPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|2G3X|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2G3X|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2NOY|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
pdb|2NOY|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
Length = 127
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKY----CPEGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGSSPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|4ANK|A Chain A, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4ANK|B Chain B, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4DEW|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
pdb|4DEW|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
Length = 147
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 27 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 72
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 73 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 131
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 132 SPYSYST 138
>pdb|1TSH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1TSH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|3DO4|A Chain A, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|B Chain B, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|C Chain C, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|D Chain D, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|E Chain E, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|F Chain F, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|G Chain G, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|H Chain H, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTAEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1BZ8|A Chain A, Transthyretin (Del Val122)
pdb|1BZ8|B Chain B, Transthyretin (Del Val122)
Length = 126
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3FC8|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FC8|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FCB|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|3FCB|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|4ABQ|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABQ|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABU|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABU|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABV|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABV|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABW|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4ABW|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4AC2|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
pdb|4AC2|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
Length = 124
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|2H4E|A Chain A, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|2H4E|B Chain B, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|3HJ0|A Chain A, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
pdb|3HJ0|B Chain B, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKXPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1TTR|A Chain A, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
pdb|1TTR|B Chain B, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3A4F|A Chain A, Crystal Structure Of Human Transthyretin (E54k)
pdb|3A4F|B Chain B, Crystal Structure Of Human Transthyretin (E54k)
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++ G+
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSESGKL 55
Query: 260 GQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSP 315
L E+ G YK+ +T Y F + +VF +S R + + LLSP
Sbjct: 56 HGLT-TEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSP 113
Query: 316 FSFTT 320
+S++T
Sbjct: 114 YSYST 118
>pdb|1BZE|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZE|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1FHN|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FHN|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1TTA|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTA|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TYR|A Chain A, Transthyretin Complex With Retinoic Acid
pdb|1TYR|B Chain B, Transthyretin Complex With Retinoic Acid
pdb|2ROY|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROY|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROX|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|2ROX|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|1BM7|A Chain A, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BM7|B Chain B, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BMZ|A Chain A, Human Transthyretin (Prealbumin)
pdb|1BMZ|B Chain B, Human Transthyretin (Prealbumin)
pdb|1E3F|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E3F|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1F41|A Chain A, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1F41|B Chain B, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1ICT|A Chain A, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|B Chain B, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|C Chain C, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|D Chain D, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|E Chain E, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|F Chain F, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|G Chain G, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|H Chain H, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1TT6|A Chain A, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TT6|B Chain B, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|A Chain A, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|B Chain B, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|C Chain C, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|D Chain D, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1U21|A Chain A, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1U21|B Chain B, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1Z7J|A Chain A, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Z7J|B Chain B, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Y1D|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|1Y1D|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|2B77|A Chain A, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B77|B Chain B, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B9A|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2B9A|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F8I|A Chain A, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2F8I|B Chain B, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2FBR|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FBR|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FLM|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2FLM|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2G5U|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G5U|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G9K|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2G9K|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2GAB|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2GAB|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2B15|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2B15|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2G4G|A Chain A, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|2G4G|B Chain B, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|3B56|A Chain A, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|3B56|B Chain B, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|2QGB|A Chain A, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGB|B Chain B, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGC|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGC|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGD|A Chain A, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGD|B Chain B, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGE|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|2QGE|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|3D2T|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3D2T|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3CBR|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3CBR|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3D7P|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3D7P|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3CN0|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN0|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN1|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN1|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN2|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN2|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN3|A Chain A, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN3|B Chain B, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN4|A Chain A, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3CN4|B Chain B, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3BSZ|A Chain A, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|B Chain B, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|C Chain C, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|D Chain D, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3GLZ|A Chain A, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GLZ|B Chain B, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GS0|A Chain A, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS0|B Chain B, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS4|A Chain A, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS4|B Chain B, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS7|A Chain A, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3GS7|B Chain B, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3ESN|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESN|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESO|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESO|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESP|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3ESP|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3A4D|A Chain A, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3A4D|B Chain B, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3IMR|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMR|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMS|A Chain A, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMS|B Chain B, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMT|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMT|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMU|A Chain A, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMU|B Chain B, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMW|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3IMW|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3KGU|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3KGU|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3IPB|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPB|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPE|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3IPE|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3M1O|A Chain A, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3M1O|B Chain B, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3P3R|A Chain A, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3R|B Chain B, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3S|A Chain A, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3S|B Chain B, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3T|A Chain A, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3T|B Chain B, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3U|A Chain A, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3P3U|B Chain B, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3TCT|A Chain A, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|3TCT|B Chain B, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|4ACT|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4ACT|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4AC4|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|4AC4|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|3W3B|A Chain A, Crystal Structure Of Wild-type Human Transthyretin
pdb|3W3B|B Chain B, Crystal Structure Of Wild-type Human Transthyretin
pdb|4IIZ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IIZ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IK6|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK6|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK7|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IK7|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IKI|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKI|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKJ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKJ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4FI6|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI6|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI7|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI7|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI8|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
pdb|4FI8|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|2WQA|A Chain A, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|B Chain B, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|C Chain C, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|D Chain D, Complex Of Ttr And Rbp4 And Oleic Acid
Length = 129
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 9 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 54
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 55 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 113
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 114 SPYSYST 120
>pdb|1ZCR|A Chain A, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZCR|B Chain B, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZD6|A Chain A, Crystal Structure Of Human Transthyretin With Bound
Chloride
pdb|1ZD6|B Chain B, Crystal Structure Of Human Transthyretin With Bound
Chloride
Length = 128
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 8 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 53
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 54 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 112
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 113 SPYSYST 119
>pdb|2TRH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 201 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260
++ P+ VLD +GSPA V V +F + W S T++ G
Sbjct: 8 SKRPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SG 53
Query: 261 QLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLS 314
+L G+ E+ G YK+ +T Y F + +VF +S R + + LLS
Sbjct: 54 ELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALLS 112
Query: 315 PFSFTT 320
P+S++T
Sbjct: 113 PYSYST 118
>pdb|1TTB|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTB|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1ETB|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETB|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 127
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIATLL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1QWH|A Chain A, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
pdb|1QWH|B Chain B, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
Length = 117
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V V +F + W S T++ G+L
Sbjct: 1 PLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 46
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 47 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 105
Query: 318 FTT 320
++T
Sbjct: 106 YST 108
>pdb|3CFM|A Chain A, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFM|B Chain B, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFN|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFN|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFQ|A Chain A, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFQ|B Chain B, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
pdb|3CFT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
Length = 118
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V V +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 47
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 48 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 106
Query: 318 FTT 320
++T
Sbjct: 107 YST 109
>pdb|4DEU|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
pdb|4DEU|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
Length = 117
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V V +F + W S T++ G+L
Sbjct: 3 PLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 48
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 49 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 107
Query: 318 FTT 320
++T
Sbjct: 108 YST 110
>pdb|1F86|A Chain A, Transthyretin Thr119met Protein Stabilisation
pdb|1F86|B Chain B, Transthyretin Thr119met Protein Stabilisation
Length = 115
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V V +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 47
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 48 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 106
Query: 318 FTT 320
++T
Sbjct: 107 YST 109
>pdb|3I9P|A Chain A, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3I9P|B Chain B, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3NEE|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEE|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEO|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|3NEO|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|4DER|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DER|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DES|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DES|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DET|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
pdb|4DET|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
Length = 116
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V V +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 47
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 48 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 106
Query: 318 FTT 320
++T
Sbjct: 107 YST 109
>pdb|2TRY|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRY|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKYYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1DVX|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVX|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVY|A Chain A, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVY|B Chain B, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVZ|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVZ|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVQ|A Chain A, Crystal Structure Of Human Transthyretin
pdb|1DVQ|B Chain B, Crystal Structure Of Human Transthyretin
pdb|1DVS|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVS|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVU|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
pdb|1DVU|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
Length = 124
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|2PAB|A Chain A, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|2PAB|B Chain B, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|1THC|A Chain A, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THC|B Chain B, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THA|A Chain A, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1THA|B Chain B, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1TLM|A Chain A, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1TLM|B Chain B, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1RLB|A Chain A, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|B Chain B, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|C Chain C, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|D Chain D, Retinol Binding Protein Complexed With Transthyretin
pdb|1QAB|A Chain A, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|B Chain B, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|C Chain C, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|D Chain D, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
Length = 127
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3DJR|A Chain A, Crystal Structure Of Transthyretin Variant L58h At Neutral
Ph
pdb|3DJR|B Chain B, Crystal Structure Of Transthyretin Variant L58h At Neutral
Ph
pdb|3DJS|A Chain A, Crystal Structure Of Transthyretin Variant L58h At Acidic
Ph
pdb|3DJS|B Chain B, Crystal Structure Of Transthyretin Variant L58h At Acidic
Ph
Length = 127
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGHTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1TTC|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTC|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|3DJT|A Chain A, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3DJT|B Chain B, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3KGS|A Chain A, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGS|B Chain B, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGT|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3KGT|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3NG5|A Chain A, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
pdb|3NG5|B Chain B, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
Length = 127
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V + +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAMH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1GKO|A Chain A, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|B Chain B, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|C Chain C, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|D Chain D, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|3DGD|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DID|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3GPS|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GRB|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRG|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
Length = 127
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCPE-GFFP---YVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y G P + +VF +S R + + +L
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPMHEHAEVVFTANDSGPR-RYTIAAML 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3CXF|A Chain A, Crystal Structure Of Transthyretin Variant Y114h
pdb|3CXF|B Chain B, Crystal Structure Of Transthyretin Variant Y114h
pdb|3DK2|A Chain A, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
pdb|3DK2|B Chain B, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
Length = 127
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP S++T
Sbjct: 112 SPHSYST 118
>pdb|3A4E|A Chain A, Crystal Structure Of Human Transthyretin (E54g)
pdb|3A4E|B Chain B, Crystal Structure Of Human Transthyretin (E54g)
Length = 127
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GGLHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|5TTR|A Chain A, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|B Chain B, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|C Chain C, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|D Chain D, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|E Chain E, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|F Chain F, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|G Chain G, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|H Chain H, Leu 55 Pro Transthyretin Crystal Structure
pdb|2B14|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Leu 55 Pro
pdb|2B14|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Leu 55 Pro
pdb|3DJZ|A Chain A, Crystal Structure Of Transthyretin Variant L55p At Neutral
Ph
pdb|3DJZ|B Chain B, Crystal Structure Of Transthyretin Variant L55p At Neutral
Ph
pdb|3DK0|A Chain A, Crystal Structure Of Transthyretin Variant L55p At Acidic
Ph
pdb|3DK0|B Chain B, Crystal Structure Of Transthyretin Variant L55p At Acidic
Ph
pdb|3SSG|A Chain A, Structure Of Transthyretin L55p In Complex With Zn
Length = 127
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++ G
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSESGEP 55
Query: 260 GQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSP 315
L E+ G YK+ +T Y F + +VF +S R + + LLSP
Sbjct: 56 HGLT-TEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALLSP 113
Query: 316 FSFTT 320
+S++T
Sbjct: 114 YSYST 118
>pdb|1X7S|A Chain A, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|1X7S|B Chain B, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|2B16|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
pdb|2B16|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
Length = 127
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T + F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSFWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3I9A|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3I9A|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3OZK|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZK|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZL|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid.
pdb|3OZL|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid
Length = 127
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSP V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPTINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|3NES|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-1
(V30m:gc-1)
pdb|3NES|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-1
(V30m:gc-1)
pdb|3NEX|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-24
(V30m:gc- 24)
pdb|3NEX|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-24
(V30m:gc- 24)
Length = 116
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V + +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPAINVAMH-----------VFRKAADDTWEPFASGKTSE---SGELH 47
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 48 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 106
Query: 318 FTT 320
++T
Sbjct: 107 YST 109
>pdb|1III|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1III|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1IIK|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
pdb|1IIK|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
Length = 127
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSES--- 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP S++T
Sbjct: 112 SPCSYST 118
>pdb|1IJN|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
pdb|1IJN|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
Length = 127
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKAPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 111
Query: 314 SPFSFTT 320
SP S++T
Sbjct: 112 SPCSYST 118
>pdb|3I9I|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3I9I|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3TFB|A Chain A, Transthyretin Natural Mutant A25t
pdb|3TFB|B Chain B, Transthyretin Natural Mutant A25t
Length = 116
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSP V V +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPTINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELH 47
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 48 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 106
Query: 318 FTT 320
++T
Sbjct: 107 YST 109
>pdb|1ETA|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETA|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 128
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V + +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAMVH----------VFRKAADDTWEPFASGKTSE---S 53
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + LL
Sbjct: 54 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIAALL 112
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 113 SPYSYST 119
>pdb|3U2I|A Chain A, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2I|B Chain B, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2J|A Chain A, Neutron Crystal Structure Of Human Transthyretin
pdb|3U2J|B Chain B, Neutron Crystal Structure Of Human Transthyretin
Length = 117
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMG 264
+ VLD +GSPA V V +F + W S T++ G+L G
Sbjct: 2 LMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---SGELHG 47
Query: 265 MI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSF 318
+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S+
Sbjct: 48 LTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYSY 106
Query: 319 TT 320
+T
Sbjct: 107 ST 108
>pdb|1FH2|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FH2|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 116
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 263
P+ VLD +GSPA V + +F + W S T++ G+L
Sbjct: 2 PLMVKVLDAVRGSPAINVAM----------VHVFRKAADDTWEPFASGKTSE---SGELH 48
Query: 264 GMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFS 317
G+ E+ G YK+ +T Y F + +VF +S R + + LLSP+S
Sbjct: 49 GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSPYS 107
Query: 318 FTT 320
++T
Sbjct: 108 YST 110
>pdb|1SOK|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOK|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOQ|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|C Chain C, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|D Chain D, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
Length = 127
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSE---S 52
Query: 260 GQLMGMI--EDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLL 313
G+L G+ E+ G YK+ +T Y F + +VF +S R + + L
Sbjct: 53 GELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPR-RYTIYAEL 111
Query: 314 SPFSFTT 320
SP+S++T
Sbjct: 112 SPYSYST 118
>pdb|1G1O|A Chain A, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|B Chain B, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|C Chain C, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|D Chain D, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|2QEL|A Chain A, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|B Chain B, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|C Chain C, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|D Chain D, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
Length = 127
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRC 259
++ P+ VLD +GSPA V V +F + W S T++
Sbjct: 7 ESKCPLMVKVLDAVRGSPAINVAVH-----------VFRKAADDTWEPFASGKTSESSDS 55
Query: 260 GQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSP 315
L E+ G YK+ +T Y F + +VF +S R + + LLSP
Sbjct: 56 HGLT-TEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRR-YTIAALLSP 113
Query: 316 FSFTT 320
+S++T
Sbjct: 114 YSYST 118
>pdb|2O8I|A Chain A, Crystal Structure Of Protein Atu2327 From Agrobacterium
Tumefaciens Str. C58
Length = 165
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 37 QAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKAEQSTA-LATANESSS 87
+AV A F + L AHP + + S+ EQ+ A L +
Sbjct: 38 KAVHGALCAQFRVASEAERLGVLRAHPDLAGKLAIAGELTADSRNEQAGAGLDRLSPQEH 97
Query: 88 QELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKI 143
+ N+ Y +FGF FII G +IL+ R N EF A + KI
Sbjct: 98 ARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKI 153
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 213 SQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQ 248
+ +P +G+EVR MW I F +DV W+Y
Sbjct: 15 AMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYH 50
>pdb|2B81|A Chain A, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|B Chain B, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|C Chain C, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|D Chain D, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
Length = 323
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 243 SGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 275
GW Y S ++ G GQ ++ED +P +K
Sbjct: 215 DGWXYYPRSPVHQAGAIGQWRELVEDYHPDVFK 247
>pdb|2OWL|A Chain A, Crystal Structure Of E. Coli Rdgc
pdb|2OWL|B Chain B, Crystal Structure Of E. Coli Rdgc
Length = 303
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 102 GFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITE 145
G I + CAS + A + LA L+K + P++ ++ +TE
Sbjct: 135 GLIXVDCASAKKAEDTLALLRKSLGSLPVVPLSXENPIELTLTE 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,375,368
Number of Sequences: 62578
Number of extensions: 324867
Number of successful extensions: 975
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 65
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)