Query 020596
Match_columns 324
No_of_seqs 263 out of 1238
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05469 Transthyretin_like Tra 100.0 9.2E-47 2E-51 314.0 12.0 109 203-324 1-113 (113)
2 TIGR02962 hdxy_isourate hydrox 100.0 1.8E-46 4E-51 312.4 12.5 108 203-324 1-112 (112)
3 cd05822 TLP_HIUase HIUase (5-h 100.0 3.4E-46 7.3E-51 310.7 12.2 108 203-324 1-112 (112)
4 COG2351 Transthyretin-like pro 100.0 6.1E-46 1.3E-50 307.9 12.4 108 203-324 9-124 (124)
5 PF00576 Transthyretin: HIUase 100.0 1.9E-46 4.1E-51 312.3 8.0 108 203-323 1-112 (112)
6 TIGR03164 UHCUDC OHCU decarbox 100.0 5.8E-45 1.2E-49 319.7 17.6 143 8-151 1-157 (157)
7 COG3195 Uncharacterized protei 100.0 1.4E-44 3E-49 315.3 16.2 149 7-156 13-175 (176)
8 TIGR03180 UraD_2 OHCU decarbox 100.0 5.5E-44 1.2E-48 313.8 18.1 144 7-152 3-158 (158)
9 PRK13798 putative OHCU decarbo 100.0 6.1E-44 1.3E-48 315.8 18.3 146 7-154 13-165 (166)
10 cd05821 TLP_Transthyretin Tran 100.0 5.9E-44 1.3E-48 300.3 12.6 111 198-321 2-116 (121)
11 smart00095 TR_THY Transthyreti 100.0 1.8E-43 4E-48 297.3 11.9 108 201-321 2-113 (121)
12 PF09349 OHCU_decarbox: OHCU d 100.0 1.2E-42 2.5E-47 305.4 13.4 143 7-150 3-159 (159)
13 PRK15036 hydroxyisourate hydro 100.0 3.9E-42 8.4E-47 295.6 12.8 107 203-324 27-137 (137)
14 KOG3006 Transthyretin and rela 100.0 4.5E-41 9.7E-46 279.0 10.2 111 200-324 18-132 (132)
15 PRK13799 unknown domain/N-carb 100.0 4.3E-39 9.3E-44 332.4 18.9 151 7-158 10-179 (591)
16 PRK13590 putative bifunctional 100.0 4.5E-39 9.8E-44 332.2 18.7 152 7-159 10-180 (591)
17 PRK13797 putative bifunctional 100.0 6.9E-38 1.5E-42 316.6 18.3 146 7-154 348-515 (516)
18 PF11974 MG1: Alpha-2-macroglo 96.8 0.0019 4E-08 52.6 4.9 44 202-260 12-56 (97)
19 PF13620 CarboxypepD_reg: Carb 96.8 0.00097 2.1E-08 50.9 2.5 59 205-284 2-60 (82)
20 PF10794 DUF2606: Protein of u 94.5 0.094 2E-06 44.6 5.8 68 202-282 41-108 (131)
21 PF13715 DUF4480: Domain of un 92.9 0.14 3E-06 39.7 3.8 55 205-284 2-56 (88)
22 PF01060 DUF290: Transthyretin 90.6 0.44 9.5E-06 37.2 4.3 36 214-260 7-42 (80)
23 cd03463 3,4-PCD_alpha Protocat 90.2 0.51 1.1E-05 43.0 5.0 57 204-261 38-97 (185)
24 PF10670 DUF4198: Domain of un 89.3 0.75 1.6E-05 41.0 5.4 62 201-279 149-210 (215)
25 cd03458 Catechol_intradiol_dio 88.3 2.9 6.2E-05 40.0 8.8 56 203-260 105-160 (256)
26 cd03457 intradiol_dioxygenase_ 88.2 0.73 1.6E-05 42.0 4.5 65 204-274 28-99 (188)
27 PRK03094 hypothetical protein; 87.8 0.53 1.1E-05 37.5 2.9 24 103-126 57-80 (80)
28 cd03868 M14_CPD_I The first ca 87.4 1.3 2.9E-05 44.0 6.3 57 202-284 295-351 (372)
29 cd00421 intradiol_dioxygenase 86.0 1.6 3.4E-05 37.9 5.2 63 204-275 13-79 (146)
30 cd03459 3,4-PCD Protocatechuat 85.6 1.5 3.3E-05 38.8 5.0 63 204-275 17-86 (158)
31 COG3485 PcaH Protocatechuate 3 85.6 1.4 3.1E-05 41.4 5.0 92 205-300 75-191 (226)
32 PF00775 Dioxygenase_C: Dioxyg 85.1 1.2 2.6E-05 40.4 4.2 66 204-275 31-97 (183)
33 cd03866 M14_CPM Peptidase M14 84.9 1.9 4.2E-05 43.1 6.0 59 202-284 294-352 (376)
34 cd03461 1,2-HQD Hydroxyquinol 84.7 3.8 8.3E-05 39.6 7.6 54 203-260 121-176 (277)
35 TIGR02422 protocat_beta protoc 84.5 1.8 3.9E-05 40.5 5.2 53 205-261 63-122 (220)
36 cd03464 3,4-PCD_beta Protocate 83.7 2.1 4.5E-05 40.1 5.2 53 205-261 68-127 (220)
37 cd03858 M14_CP_N-E_like Carbox 83.6 1.9 4.1E-05 42.8 5.2 56 203-284 298-353 (374)
38 cd03863 M14_CPD_II The second 81.8 3.1 6.7E-05 41.8 6.0 58 202-284 296-353 (375)
39 TIGR02423 protocat_alph protoc 81.8 2.7 5.8E-05 38.5 5.1 53 204-260 41-100 (193)
40 cd03460 1,2-CTD Catechol 1,2 d 81.6 1.9 4.1E-05 41.8 4.2 55 204-260 126-180 (282)
41 TIGR02439 catechol_proteo cate 81.2 2.2 4.8E-05 41.4 4.5 53 204-260 130-184 (285)
42 PF02369 Big_1: Bacterial Ig-l 81.2 2.4 5.3E-05 34.3 4.1 63 202-281 24-89 (100)
43 TIGR02438 catachol_actin catec 80.7 2.5 5.5E-05 40.9 4.7 54 203-260 133-188 (281)
44 PF08400 phage_tail_N: Prophag 80.6 5.8 0.00013 34.5 6.5 61 209-284 8-68 (134)
45 TIGR02465 chlorocat_1_2 chloro 80.5 2.6 5.6E-05 40.1 4.6 57 203-261 99-155 (246)
46 PF05738 Cna_B: Cna protein B- 80.1 2.7 5.8E-05 31.0 3.8 59 219-300 2-63 (70)
47 PF03698 UPF0180: Uncharacteri 77.2 2.6 5.7E-05 33.5 3.1 23 104-126 58-80 (80)
48 smart00634 BID_1 Bacterial Ig- 75.8 6.9 0.00015 30.8 5.2 67 202-283 19-85 (92)
49 cd03462 1,2-CCD chlorocatechol 75.0 4.3 9.4E-05 38.6 4.5 54 203-260 100-155 (247)
50 PF05688 DUF824: Salmonella re 74.0 3.1 6.7E-05 29.9 2.4 25 203-228 15-39 (47)
51 cd03864 M14_CPN Peptidase M14 73.2 7.1 0.00015 39.5 5.7 66 203-300 316-381 (392)
52 cd03867 M14_CPZ Peptidase M14- 71.8 6.6 0.00014 39.6 5.1 57 202-284 317-373 (395)
53 cd06245 M14_CPD_III The third 70.7 6.5 0.00014 39.3 4.8 56 202-284 286-341 (363)
54 PF12866 DUF3823: Protein of u 66.0 8.5 0.00019 36.0 4.2 77 202-299 21-102 (222)
55 PF05751 FixH: FixH; InterPro 65.2 28 0.00061 29.3 7.0 62 203-278 69-130 (146)
56 PF11288 DUF3089: Protein of u 63.8 15 0.00034 34.0 5.4 48 82-133 76-125 (207)
57 PF14686 fn3_3: Polysaccharide 60.3 17 0.00036 29.5 4.4 29 248-281 41-69 (95)
58 KOG2649 Zinc carboxypeptidase 59.9 23 0.00049 37.0 6.3 74 202-301 377-456 (500)
59 PF07210 DUF1416: Protein of u 58.9 26 0.00056 28.3 5.1 55 204-281 9-63 (85)
60 cd03865 M14_CPE_H Peptidase M1 57.9 19 0.00042 36.6 5.4 55 204-284 327-381 (402)
61 PF01835 A2M_N: MG2 domain; I 57.5 61 0.0013 25.3 7.3 60 211-281 25-86 (99)
62 PRK02515 psbU photosystem II c 52.8 22 0.00047 30.9 4.1 34 7-40 57-91 (132)
63 PF12836 HHH_3: Helix-hairpin- 52.1 7.7 0.00017 28.9 1.1 34 7-40 10-48 (65)
64 COG2373 Large extracellular al 49.9 40 0.00087 40.2 7.0 45 202-261 304-348 (1621)
65 PF13986 DUF4224: Domain of un 45.7 41 0.0009 23.9 4.0 32 82-113 3-39 (47)
66 COG1691 NCAIR mutase (PurE)-re 42.8 18 0.00039 34.4 2.3 56 83-138 28-90 (254)
67 PF13446 RPT: A repeated domai 42.2 57 0.0012 23.8 4.5 41 110-151 15-55 (62)
68 PF12652 CotJB: CotJB protein; 40.2 84 0.0018 24.8 5.4 47 53-110 16-62 (78)
69 PF01190 Pollen_Ole_e_I: Polle 39.6 55 0.0012 26.0 4.4 37 214-261 17-53 (97)
70 PF07037 DUF1323: Putative tra 37.9 28 0.00061 29.8 2.5 28 8-35 1-34 (122)
71 COG2605 Predicted kinase relat 37.6 74 0.0016 31.5 5.6 92 82-177 126-260 (333)
72 PRK03892 ribonuclease P protei 35.6 1.1E+02 0.0025 28.7 6.3 53 94-148 158-216 (216)
73 cd03869 M14_CPX_like Peptidase 35.0 81 0.0018 32.2 5.7 56 204-285 330-385 (405)
74 COG1477 ApbE Membrane-associat 31.3 26 0.00057 34.8 1.5 23 204-226 256-278 (337)
75 KOG1948 Metalloproteinase-rela 30.1 80 0.0017 35.6 4.9 56 204-283 317-372 (1165)
76 COG2967 ApaG Uncharacterized p 29.6 83 0.0018 27.1 4.0 43 243-285 42-111 (126)
77 PF06299 DUF1045: Protein of u 29.6 37 0.00079 30.4 2.0 26 82-107 74-104 (160)
78 PF14533 USP7_C2: Ubiquitin-sp 29.3 43 0.00094 30.8 2.5 28 99-126 129-157 (213)
79 cd01976 Nitrogenase_MoFe_alpha 29.1 2.8E+02 0.0061 28.0 8.5 48 92-139 233-282 (421)
80 PF09058 L27_1: L27_1; InterP 28.9 56 0.0012 25.0 2.6 38 115-152 12-49 (64)
81 cd01971 Nitrogenase_VnfN_like 28.7 1.3E+02 0.0028 30.4 6.0 38 92-129 221-262 (427)
82 PF04536 TPM: TLP18.3, Psb32 a 28.4 1E+02 0.0022 24.6 4.3 29 82-110 2-30 (119)
83 COG5266 CbiK ABC-type Co2+ tra 27.7 1.2E+02 0.0026 29.3 5.2 70 202-282 171-242 (264)
84 PF10577 UPF0560: Uncharacteri 27.7 1.1E+02 0.0024 33.9 5.5 60 205-284 3-62 (807)
85 KOG0713 Molecular chaperone (D 27.7 76 0.0016 31.7 4.0 29 56-98 39-67 (336)
86 PF07495 Y_Y_Y: Y_Y_Y domain; 27.7 1.1E+02 0.0023 21.9 3.9 30 268-298 35-65 (66)
87 PF00148 Oxidored_nitro: Nitro 27.1 2.3E+02 0.005 27.8 7.4 34 93-126 207-243 (398)
88 PF08006 DUF1700: Protein of u 26.0 1.3E+02 0.0029 26.4 5.0 37 113-149 2-38 (181)
89 PF11629 Mst1_SARAH: C termina 25.0 69 0.0015 23.3 2.3 31 70-100 8-38 (49)
90 TIGR03769 P_ac_wall_RPT actino 24.3 61 0.0013 22.4 1.9 13 270-282 11-23 (41)
91 TIGR03223 Phn_opern_protn puta 24.0 56 0.0012 30.9 2.2 26 82-107 134-164 (228)
92 KOG0777 Geranylgeranyl pyropho 23.9 39 0.00084 32.5 1.1 31 98-128 221-252 (322)
93 PRK11072 bifunctional glutamin 23.3 2.3E+02 0.005 32.1 7.2 100 13-112 555-689 (943)
94 COG5255 Uncharacterized protei 23.0 46 0.001 31.2 1.4 85 57-145 119-210 (239)
95 PF13115 YtkA: YtkA-like 23.0 3.4E+02 0.0073 20.5 6.3 24 204-229 23-46 (86)
96 PRK14108 bifunctional glutamin 22.5 3E+02 0.0065 31.4 7.9 102 12-113 581-710 (986)
97 PF04079 DUF387: Putative tran 22.2 4.3E+02 0.0093 23.4 7.4 75 70-145 14-92 (159)
98 PRK14476 nitrogenase molybdenu 21.2 2.8E+02 0.0061 28.5 6.8 41 92-132 247-290 (455)
99 PF14579 HHH_6: Helix-hairpin- 21.2 1.1E+02 0.0024 24.1 3.1 25 19-43 36-63 (90)
100 TIGR02461 osmo_MPG_phos mannos 21.1 1.9E+02 0.0042 26.4 5.2 36 84-126 18-53 (225)
101 TIGR01285 nifN nitrogenase mol 20.7 2.5E+02 0.0055 28.5 6.4 38 92-129 247-287 (432)
102 TIGR01641 phageSPP1_gp7 phage 20.6 2.7E+02 0.0059 22.2 5.4 36 109-144 10-45 (108)
103 PF05985 EutC: Ethanolamine am 20.6 1.4E+02 0.003 28.5 4.1 89 35-127 35-135 (237)
104 TIGR02931 anfK_nitrog Fe-only 20.3 3.4E+02 0.0074 27.9 7.3 40 91-130 246-288 (461)
105 cd01966 Nitrogenase_NifN_1 Nit 20.3 2.5E+02 0.0054 28.4 6.2 42 91-132 235-279 (417)
106 PF05443 ROS_MUCR: ROS/MUCR tr 20.0 53 0.0011 28.5 1.1 10 95-104 98-107 (132)
No 1
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=100.00 E-value=9.2e-47 Score=314.03 Aligned_cols=109 Identities=33% Similarity=0.602 Sum_probs=99.9
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
+|||||||||++|+||+||+|+|++++. ++.|+.|++++||+||||+.|+. ++.+.+|+|||+|+||+
T Consensus 1 ~~lStHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~~l~-~~~~~~G~Y~l~F~t~~ 68 (113)
T cd05469 1 CPLMVKVLDAVRGSPAANVAIKVFRKTA-----------DGSWEIFATGKTNEDGELHGLIT-EEEFXAGVYRVEFDTKS 68 (113)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCccCccc-cccccceEEEEEEehHH
Confidence 5899999999999999999999998752 24799999999999999998876 56789999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 283 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 283 Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
||+ ++|||+|+|+|.|++++ ++|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~v~d~~-~~HYHvPLLlSP~gYSTYRGS 113 (113)
T cd05469 69 YWKALGITPFHEYAEVVFTANDSG-HRHYTIALLLSPFSYSTTAVV 113 (113)
T ss_pred hHhhCCCCCCcceEEEEEEECCCC-CCCEEeCEEecCCeeeeecCC
Confidence 997 78999999999999841 799999999999999999998
No 2
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=100.00 E-value=1.8e-46 Score=312.38 Aligned_cols=108 Identities=51% Similarity=0.941 Sum_probs=100.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
++||||||||++|+||+||+|+|+++++ +.|+.|++++||+||||++|+...+.+.+|+|+|+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~ 68 (112)
T TIGR02962 1 SPLSTHVLDTTSGKPAAGVPVTLYRLDG------------SGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGD 68 (112)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC------------CCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhh
Confidence 4799999999999999999999998753 4699999999999999999877667889999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 283 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 283 Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
||+ ++|||+|+|+|+|+++ .+|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~v~i~F~i~~~--~~HyHvPlllSP~~ySTYRGS 112 (112)
T TIGR02962 69 YFAARGVETFYPEVEVVFTIADP--GQHYHVPLLLSPYGYSTYRGS 112 (112)
T ss_pred hhhhcCCCCCccceEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 997 7899999999999985 799999999999999999998
No 3
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=100.00 E-value=3.4e-46 Score=310.74 Aligned_cols=108 Identities=51% Similarity=0.938 Sum_probs=101.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
++||||||||+.|+||+||+|+|+++++ +.|+.|++++||+||||+.|+..++.+.+|+|||+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 68 (112)
T cd05822 1 GPLSTHVLDTATGKPAAGVAVTLYRLDG------------NGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGA 68 (112)
T ss_pred CCceeEEEeCCCCcccCCCEEEEEEecC------------CCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhh
Confidence 4799999999999999999999999753 4699999999999999999887667899999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 283 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 283 Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
||+ ++|||+|+|+|.|+++ ++|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~i~~~--~~HYHvPlLlSP~sYSTYRGS 112 (112)
T cd05822 69 YFAARGQESFYPEVEVRFTITDP--TEHYHVPLLLSPFGYSTYRGS 112 (112)
T ss_pred hhhhcCCCccceeeEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 998 6899999999999985 799999999999999999998
No 4
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=100.00 E-value=6.1e-46 Score=307.94 Aligned_cols=108 Identities=44% Similarity=0.758 Sum_probs=102.2
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
+.|||||||+++|+||+||+|+|+++.+ +.|+.|.+..||+||||+.++..++.+.+|+|+|+|++|+
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~~------------~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gd 76 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLEG------------NQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGD 76 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEecC------------CcceeeeEEEecCCCcccccccCccccccceEEEEEEcch
Confidence 4799999999999999999999999974 4899999999999999998888889999999999999999
Q ss_pred CCC--------CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 283 YCP--------EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 283 Yf~--------~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
||+ ++|||.|+|+|.|.+. ++|||||||||||||||||||
T Consensus 77 Yf~~~g~~~~~~~Fl~~V~vrF~iad~--~~HYHVPLLlSPygYSTYRGS 124 (124)
T COG2351 77 YFKSRGVQLADPPFLDVVPVRFGIADV--DEHYHVPLLLSPYGYSTYRGS 124 (124)
T ss_pred hhhccCcccCCCCccceEEEEEEEcCC--CCceeeeeEecCcccceecCC
Confidence 997 4699999999999985 799999999999999999998
No 5
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=100.00 E-value=1.9e-46 Score=312.30 Aligned_cols=108 Identities=46% Similarity=0.859 Sum_probs=99.0
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
++||||||||++|+||+||+|+|++++. +++|+.|++++||+||||+.++.....+.+|+|||+|+|++
T Consensus 1 ~~iStHVLDt~~G~PA~gv~V~L~~~~~-----------~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 69 (112)
T PF00576_consen 1 CPISTHVLDTTTGKPAAGVPVTLYRLDS-----------DGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGD 69 (112)
T ss_dssp SSEEEEEEETTTTEE-TT-EEEEEEEET-----------TSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHH
T ss_pred CCcEEEEeeCCCCCCccCCEEEEEEecC-----------CCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHH
Confidence 5899999999999999999999999863 46899999999999999998887788999999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccC
Q 020596 283 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRG 323 (324)
Q Consensus 283 Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRG 323 (324)
||+ ++|||+|+|+|.|+++ .+||||||||||||||||||
T Consensus 70 Yf~~~~~~~F~p~V~I~F~v~d~--~~HYHvPLLlSP~gYSTYRG 112 (112)
T PF00576_consen 70 YFAAQGIPSFYPEVEIRFTVKDP--QQHYHVPLLLSPFGYSTYRG 112 (112)
T ss_dssp HHHHTTCSTSESEEEEEEEESTT--TSEEEEEEEEETTEEEEEEB
T ss_pred hHhhcCCCeeeecceEEEEECCC--CCcEEEEEEecCceeeEEcC
Confidence 998 8999999999999995 69999999999999999998
No 6
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=100.00 E-value=5.8e-45 Score=319.71 Aligned_cols=143 Identities=29% Similarity=0.439 Sum_probs=136.4
Q ss_pred CCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchHH
Q 020596 8 LDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKAE 74 (324)
Q Consensus 8 m~~~~f~~~~~-----spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~E 74 (324)
|++++|+++|| +||+|+++|++|||+|+++|++++.++| ..++.++|+++|++||+||+ +.+|++|
T Consensus 1 m~~~~fv~~l~~l~E~spw~a~~~~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~ll~~HP~Lg~~~~~~~~ls~~S~~E 79 (157)
T TIGR03164 1 MDKADFVAALGDIFEHSPWIAERAWAQRPFDSIEDLHAAMVGAV-RAASPEQQLALIRAHPDLAGKLAVAGELTAESTSE 79 (157)
T ss_pred CCHHHHHHHHhhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHhCCcccccccccccchHhhHHH
Confidence 78999999886 8999999999999999999999999996 66899999999999999997 6789999
Q ss_pred hhHh-hccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhH
Q 020596 75 QSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 151 (324)
Q Consensus 75 Qa~a-l~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l 151 (324)
|+++ ++.++++++++|.+||++|++||||||||||+|+++++||++|++||+|++++|+++|+.||+|||++||.++
T Consensus 80 Q~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kIa~~RL~~l 157 (157)
T TIGR03164 80 QASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFARALREIERIARFRLRDL 157 (157)
T ss_pred HHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9987 7789999999999999999999999999999999999999999999999999999999999999999999875
No 7
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.4e-44 Score=315.29 Aligned_cols=149 Identities=31% Similarity=0.394 Sum_probs=143.5
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchH
Q 020596 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKA 73 (324)
Q Consensus 7 ~m~~~~f~~~~~-----spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~ 73 (324)
+|++++|++.|| |||+|+++|+.|||.|++.|+++|..++ ..++.++|+++|++||||++ ++.|++
T Consensus 13 ~~dr~~Fv~~fg~ifEhSpWvaErA~~~~pf~s~~~l~~am~~~v-~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~ 91 (176)
T COG3195 13 KLDREAFVETFGGIFEHSPWVAERAYDLRPFASAEGLHAAMCRAV-RAASEEERLALIRAHPDLAGKAAIAGELTAESTS 91 (176)
T ss_pred hccHHHHHHHhhhHhhcCchHHHHHhccCCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHH
Confidence 589999999997 8999999999999999999999999996 55899999999999999997 899999
Q ss_pred HhhHh-hccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhHh
Q 020596 74 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 152 (324)
Q Consensus 74 EQa~a-l~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 152 (324)
||+++ ||.|+++|+++|..||.+|.+||||||||||+|+++++|++++++||.|+.++|++.|+.||.+||++||.+|+
T Consensus 92 EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~~Rl~dll 171 (176)
T COG3195 92 EQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIALLRLADLL 171 (176)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 020596 153 SAKA 156 (324)
Q Consensus 153 ~~~~ 156 (324)
.+.+
T Consensus 172 ~~~~ 175 (176)
T COG3195 172 PEGN 175 (176)
T ss_pred cccC
Confidence 8754
No 8
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=100.00 E-value=5.5e-44 Score=313.80 Aligned_cols=144 Identities=35% Similarity=0.611 Sum_probs=132.5
Q ss_pred CCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchHH
Q 020596 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKAE 74 (324)
Q Consensus 7 ~m~~~~f~~----~~~spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~E 74 (324)
.|++++|++ ||.++.|++++|++|||+|+++|++++.++| ..++.++|+++|++||+||+ +.+|..|
T Consensus 3 ~l~~~~f~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~E 81 (158)
T TIGR03180 3 QLPADEASATLMECCAIPAWARTLVAARPFASAEALLAAADQAW-QNLSEQDLFEALAGHPRIGEKPAGQAAYAATSRRE 81 (158)
T ss_pred CCCHHHHHHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccchhhhhHHH
Confidence 488999987 5555555579999999999999999999996 55899999999999999997 5679999
Q ss_pred hhHhhccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhHh
Q 020596 75 QSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 152 (324)
Q Consensus 75 Qa~al~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 152 (324)
|+ ++++++++++++|.+||++|++||||||||||+|+|+++||+.|++||+|++++|+.+|++||.|||++||.+|+
T Consensus 82 Qa-gl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~~RL~~l~ 158 (158)
T TIGR03180 82 QA-GVDGADEETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTIAAEQLRKINRLRLSRLI 158 (158)
T ss_pred Hh-cccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 97 556899999999999999999999999999999999999999999999999999999999999999999999985
No 9
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=100.00 E-value=6.1e-44 Score=315.80 Aligned_cols=146 Identities=37% Similarity=0.611 Sum_probs=134.9
Q ss_pred CCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC---CCcchHHhhHhh
Q 020596 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ---SPWSKAEQSTAL 79 (324)
Q Consensus 7 ~m~~~~f~~----~~~spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~---s~~S~~EQa~al 79 (324)
+|++++|++ ||..+.||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||+ ...|..||+ ++
T Consensus 13 ~l~~~~f~~~l~~~~e~~~Wa~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~-gl 90 (166)
T PRK13798 13 ALPERQAVHALFECCHSTAWARRLAAARPFADHDALLAAADEAL-AGLSEADIDEALAGHPRIGERPASKASAREQA-GV 90 (166)
T ss_pred CCCHHHHHHHHHHHhcChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccCHHHhc-cc
Confidence 589999986 5554444999999999999999999999996 55899999999999999998 355999999 56
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhHhcc
Q 020596 80 ATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA 154 (324)
Q Consensus 80 ~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~~~ 154 (324)
+.++++++++|.+||++|++||||||||||+|+|+++||++|++||+|++++|+.+|+.||.|||++||.++|++
T Consensus 91 ~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~lRL~~l~~~ 165 (166)
T PRK13798 91 ADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKVVREELAKINRLRLERLLGP 165 (166)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999975
No 10
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=100.00 E-value=5.9e-44 Score=300.30 Aligned_cols=111 Identities=32% Similarity=0.545 Sum_probs=99.9
Q ss_pred CCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEE
Q 020596 198 PTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 277 (324)
Q Consensus 198 ~~~~~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 277 (324)
++++|+|||||||||++|+||+||+|+|++... ++.|+.|++++||+||||+.|+. ...+.+|+|||+
T Consensus 2 ~~~~~~~ittHVLDt~~G~PAaGV~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~ 69 (121)
T cd05821 2 GGDSKCPLMVKVLDAVRGSPAANVAVKVFKKTA-----------DGSWEPFASGKTTETGEIHGLTT-DEQFTEGVYKVE 69 (121)
T ss_pred CCCCCCCcEEEEEECCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCCCCccC-ccccCCeeEEEE
Confidence 567899999999999999999999999998641 24799999999999999998654 457889999999
Q ss_pred EeeCCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccc
Q 020596 278 FNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 321 (324)
Q Consensus 278 F~t~~Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTY 321 (324)
|+||+||+ ++|||+|+|+|.|++++ .+||||||||||||||||
T Consensus 70 F~tg~Yf~~~~~~~F~p~V~I~F~i~d~~-~~HYHVPLLlSP~gYST~ 116 (121)
T cd05821 70 FDTKAYWKKLGISPFHEYAEVVFTANDSG-HRHYTIAALLSPYSYSTT 116 (121)
T ss_pred EehhHhhhhcCCCCCCceEEEEEEECCCC-CCCeEeCeEecCCcceeE
Confidence 99999997 78999999999999841 489999999999999998
No 11
>smart00095 TR_THY Transthyretin.
Probab=100.00 E-value=1.8e-43 Score=297.31 Aligned_cols=108 Identities=32% Similarity=0.575 Sum_probs=97.8
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEee
Q 020596 201 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 280 (324)
Q Consensus 201 ~~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 280 (324)
+++|||||||||++|+||+||+|+|++... ++.|+.|++++||+||||+.|+. ++.+.+|+|||+|+|
T Consensus 2 ~~~plTtHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~la~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~F~t 69 (121)
T smart00095 2 SKCPLMVKVLDAVRGSPAVNVAVKVFKKTE-----------EGTWEPFASGKTNESGEIHELTT-DEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCCeEEEEEECCCCccCCCCEEEEEEeCC-----------CCceEEEEEEecCCCccccCccC-cccccceEEEEEEeh
Confidence 578999999999999999999999998641 25799999999999999998654 467889999999999
Q ss_pred CCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccc
Q 020596 281 GKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 321 (324)
Q Consensus 281 ~~Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTY 321 (324)
|+||+ ++|||+|+|+|+|+++ ..+||||||||||||||||
T Consensus 70 g~Yf~~~~~~~F~p~V~V~F~i~d~-~~~HYHVPLLlSP~~YST~ 113 (121)
T smart00095 70 KSYWKALGISPFHEYADVVFTANDS-GHRHYTIAALLSPYSYSTT 113 (121)
T ss_pred hHhHhhcCCCCCCceEEEEEEECCC-CCCCeEECeEecCCcceeE
Confidence 99997 7899999999999984 1489999999999999998
No 12
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=100.00 E-value=1.2e-42 Score=305.36 Aligned_cols=143 Identities=42% Similarity=0.618 Sum_probs=121.4
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchH
Q 020596 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKA 73 (324)
Q Consensus 7 ~m~~~~f~~~~~-----spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~ 73 (324)
+|++++|++.|+ +||+++.++..|||+|+++|+.++.++| ..+++++|+++|++||+||+ +..|..
T Consensus 3 ~l~~~~~~~~l~~~~e~~~w~~~~a~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~lg~~~~~~~~~s~~S~~ 81 (159)
T PF09349_consen 3 ALSPEEFVAALGNCFESSPWAAERAAAARPFASVDALIAAADEAV-RSLSEEDKLEALRAHPRLGERAARAGNLSAASAS 81 (159)
T ss_dssp CS-HHHHHHHHTTSSTTHHHHHHHHHCGGS-SSHHHHHHHHHHHH-HCS-HHHHHHHHHTS--TTSHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHHHhHhCCCHHHHHHHhccCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCcccccccccccccchhhhh
Confidence 588999987554 6888888888899999999999999996 66899999999999999998 678999
Q ss_pred HhhHh-hccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 020596 74 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAK 150 (324)
Q Consensus 74 EQa~a-l~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~ 150 (324)
||+++ +++++++++++|.+||++|++||||||||||+|+|+++||++|++||+|++++|+.+|++||+|||++||+|
T Consensus 82 EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGf~Fvi~~~g~s~~~Il~~l~~Rl~n~~~~E~~~A~~Ev~kIa~~RL~k 159 (159)
T PF09349_consen 82 EQASAGLDSLDEEELAELAALNQAYEEKFGFPFVICARGRSAAEILAALERRLNNDPEEELRIALEEVAKIARLRLEK 159 (159)
T ss_dssp HTHHCCTTSTHHHHHHHHHHHHHHHHHHHSS-----GTT--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99988 788999999999999999999999999999999999999999999999999999999999999999999986
No 13
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=100.00 E-value=3.9e-42 Score=295.63 Aligned_cols=107 Identities=41% Similarity=0.758 Sum_probs=98.3
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
++|||||||+++|+||+||+|+|++.+ +++|+.|++++||+||||+.++. .+.+.+|.|+|+|++++
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~------------~~~w~~l~~~~Td~dGR~~~l~~-~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKA------------DNGWLQLNTAKTDKDGRIKALWP-EQTATTGDYRVVFKTGD 93 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEcc------------CCceEEEEEEEECCCCCCccccC-cccCCCeeEEEEEEcch
Confidence 589999999999999999999999864 25799999999999999998654 34588999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 283 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 283 Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
||+ ++|||+|+|+|.|+++ ++|||||||||||||||||||
T Consensus 94 Yf~~~~~~~F~p~v~v~F~i~~~--~~HyHvPlllsP~~yStyRGs 137 (137)
T PRK15036 94 YFKKQNLESFFPEIPVEFHINKV--NEHYHVPLLLSQYGYSTYRGS 137 (137)
T ss_pred hhhccCCCCCcceeEEEEEECCC--CCCeEECeEecCCccccccCC
Confidence 997 7899999999999984 799999999999999999998
No 14
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-41 Score=278.97 Aligned_cols=111 Identities=48% Similarity=0.852 Sum_probs=103.4
Q ss_pred CCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEe
Q 020596 200 RTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 279 (324)
Q Consensus 200 ~~~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 279 (324)
.+.+|||+||||++.|.||+||+|.|+++.+ +..|+.|+++.||.|||++ |+.....+.||+|+++|+
T Consensus 18 ~~~~~itahVLd~s~GsPA~gVqV~~f~~~~-----------~~~w~~igs~~T~~nGrv~-~~~~~~tl~~GtYr~~~d 85 (132)
T KOG3006|consen 18 VPGPPITAHVLDISRGSPAAGVQVHLFILAN-----------DDTWTPIGSGFTQDNGRVD-WVSPDFTLIPGTYRLVFD 85 (132)
T ss_pred CCCCCcEeEEeecccCCcccceEEEEEEecC-----------CCcccCccccccccCceee-cccchhhhccceEEEEEe
Confidence 3458999999999999999999999999864 3489999999999999999 887778899999999999
Q ss_pred eCCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020596 280 TGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 324 (324)
Q Consensus 280 t~~Yf~----~~F~p~V~V~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 324 (324)
|+.||+ ++|||+|+|+|.|++. .+|||||||||||||||||||
T Consensus 86 T~~Y~~a~gv~sFypyvevvf~in~s--~qhyhvpllLsPygySTyrgs 132 (132)
T KOG3006|consen 86 TEPYYKALGVESFYPYVEVVFNINDS--TQHYHVPLLLSPYGYSTYRGS 132 (132)
T ss_pred cccccccCCcccccccEEEEEEeccC--cceEEEeEEecccceeeeccC
Confidence 999998 7999999999999995 599999999999999999998
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=332.44 Aligned_cols=151 Identities=26% Similarity=0.365 Sum_probs=141.1
Q ss_pred CCCHHHHHH----hh-CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchH
Q 020596 7 VLDEEELLG----CC-GSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKA 73 (324)
Q Consensus 7 ~m~~~~f~~----~~-~spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~ 73 (324)
+|++++|++ || .+||||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||+ +.+|++
T Consensus 10 ~~~~~~~~~~~~~~~e~~~w~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13799 10 AADLAAAADLLDGIYEHSPWIAEAAAALGPFPSIAAIKQALAGVL-DAADRAAKLDLIRAHPELAGKAAEAGELTAESTG 88 (591)
T ss_pred CCCHHHHHHHHHhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCcccccCcccccccchhhHh
Confidence 589999987 44 49999999999999999999999999996 66899999999999999997 568999
Q ss_pred HhhHh-hccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-----CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020596 74 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGR-----TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 147 (324)
Q Consensus 74 EQa~a-l~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~-----s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~R 147 (324)
||+++ ++.++++++++|.+||++|++||||||||||+|+ ++++||++|++||.|++++|+.+|++||+|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~E~~~a~~e~~~I~~~R 168 (591)
T PRK13799 89 EQAKAGLNLCTPEEFAAIQKLNADYGKKFGFPFILAVKGARGAGLAKAEIIATFERRLHNHPDDELGEALRNIGRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEcCcccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99965 7889999999999999999999999999999997 69999999999999999999999999999999999
Q ss_pred HHhHhcccccC
Q 020596 148 LAKLFSAKAKA 158 (324)
Q Consensus 148 L~~l~~~~~~~ 158 (324)
|+++|...|.+
T Consensus 169 l~~l~~~~~~~ 179 (591)
T PRK13799 169 INDKFGYTPAI 179 (591)
T ss_pred HHHHhCCChhH
Confidence 99999986655
No 16
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=4.5e-39 Score=332.22 Aligned_cols=152 Identities=27% Similarity=0.374 Sum_probs=143.0
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------CCcchH
Q 020596 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------SPWSKA 73 (324)
Q Consensus 7 ~m~~~~f~~~~~-----spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------s~~S~~ 73 (324)
+|++++|++.|+ +||||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||+ +.+|++
T Consensus 10 ~l~~~~~~~~l~~~~e~~~~~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~hP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13590 10 AASAAEATALLDGLYEHSPWIAERALAQRPFRSLAQLKHALVQVV-REAGRDAQLGLIRAHPELAGKAMVAGSLTAESTH 88 (591)
T ss_pred CCCHHHHHHHhhhhccCChHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCccccCCcccCccchhHhHH
Confidence 599999998654 8999999999999999999999999996 66899999999999999997 678999
Q ss_pred HhhHh-hccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020596 74 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASG-----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 147 (324)
Q Consensus 74 EQa~a-l~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G-----~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~R 147 (324)
||+++ ++.++++++++|.+||++|++||||||||||+| +++++||++|++||.|++++|+.+|++||.|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~~E~~~a~~e~~~I~~~R 168 (591)
T PRK13590 89 EQGKAGLTHCTPEEFARIQQLNADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPDFELAEALRNIHRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99976 888999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhHhcccccCC
Q 020596 148 LAKLFSAKAKAS 159 (324)
Q Consensus 148 L~~l~~~~~~~~ 159 (324)
|++++..+++..
T Consensus 169 l~~~~~~~~~~~ 180 (591)
T PRK13590 169 LNDKFGAEPVLG 180 (591)
T ss_pred HHHHhCCCchHH
Confidence 999999976654
No 17
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=100.00 E-value=6.9e-38 Score=316.65 Aligned_cols=146 Identities=38% Similarity=0.657 Sum_probs=132.5
Q ss_pred CCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC--------------C
Q 020596 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ--------------S 68 (324)
Q Consensus 7 ~m~~~~f~~----~~~spw~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~--------------s 68 (324)
.|++++|++ ||.++.|++++|++|||+|+++|+++|.++| ..++.++|+++|++||+||+ +
T Consensus 348 al~~~~f~~~l~~c~e~spW~~~~~~~RPF~s~~aL~~a~~~~v-~~as~e~~l~aL~aHPdLg~r~a~~~~~t~~a~~t 426 (516)
T PRK13797 348 ALTPDAAREELLACCGSEDWASAVAARRPFGTLAALLPAAEQEW-WRLPESAWLEAFTAHPRIGERPTQAPAPPTSARAT 426 (516)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCcccccccccccccccccch
Confidence 588888875 6665555599999999999999999999996 55799999999999999997 1
Q ss_pred Ccc----hHHhhHhhccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020596 69 PWS----KAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 144 (324)
Q Consensus 69 ~~S----~~EQa~al~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa 144 (324)
.+| .+||++ ++.++++++++|++||++|++||||||||||+|+|+++||++|++||+|++++|+++|+.||.|||
T Consensus 427 ~~S~d~~~~EQAG-L~~ls~~e~~~L~~lN~aY~eKFGFpFIIca~G~s~~eILa~l~~RL~N~~e~E~~~Al~Ev~kIa 505 (516)
T PRK13797 427 VVSLDAPRREQAA-MDQAAEDVRAAFARGNAAYEERFGFIFLVRAAGRGAEEMLELLRARLAHDPEQELRIAAGQQAEIT 505 (516)
T ss_pred hccccchhhhhhc-cccCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 467 788843 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcc
Q 020596 145 ELRLAKLFSA 154 (324)
Q Consensus 145 ~~RL~~l~~~ 154 (324)
++||++||..
T Consensus 506 ~lRL~~ll~~ 515 (516)
T PRK13797 506 ALRLRHLITG 515 (516)
T ss_pred HHHHHHHhcc
Confidence 9999999974
No 18
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=96.85 E-value=0.0019 Score=52.62 Aligned_cols=44 Identities=30% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEE-ecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEM-WKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~-~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 260 (324)
...+...|-|..+|+|.+|++|+|+. .. -+.|++++||+||++.
T Consensus 12 ~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~---------------~~~l~~g~TD~~G~a~ 56 (97)
T PF11974_consen 12 PDGLLVWVTSLSTGKPVAGAEVELYDSRN---------------GQVLASGKTDADGFAS 56 (97)
T ss_pred CCCEEEEEeeCCCCCccCCCEEEEEECCC---------------CcEeeeeeeCCCceEE
Confidence 46789999999999999999999986 32 2489999999999986
No 19
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.76 E-value=0.00097 Score=50.95 Aligned_cols=59 Identities=34% Similarity=0.493 Sum_probs=41.9
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCCC
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 284 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Yf 284 (324)
|+-.|.|. .|.|.+|+.|.|..... .......||+||+..- ..+.+|.|+|++.-..|.
T Consensus 2 I~G~V~d~-~g~pv~~a~V~l~~~~~---------------~~~~~~~Td~~G~f~~-----~~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 2 ISGTVTDA-TGQPVPGATVTLTDQDG---------------GTVYTTTTDSDGRFSF-----EGLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp EEEEEEET-TSCBHTT-EEEET--TT---------------TECCEEE--TTSEEEE-----EEE-SEEEEEEEEBTTEE
T ss_pred EEEEEEcC-CCCCcCCEEEEEEEeeC---------------CCEEEEEECCCceEEE-----EccCCEeEEEEEEECCcc
Confidence 77899998 99999999999965321 2357799999999862 235679999999776654
No 20
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=94.52 E-value=0.094 Score=44.64 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=49.5
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
..|+|-||=|. -|.|+.|+.|.|.+-...+++|+.. .-+.-|.||..|.+. | ..-..|.|-+.|.-+
T Consensus 41 ~~pVT~hVen~-e~~pi~~~ev~lmKa~ds~~qPs~e-------ig~~IGKTD~~Gki~-W----k~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 41 VNPVTFHVENA-EGQPIKDFEVTLMKAADSDPQPSKE-------IGISIGKTDEEGKII-W----KNGRKGKYIVFLPNG 107 (131)
T ss_pred cccEEEEEecC-CCCcccceEEEEEeccccCCCCchh-------hceeecccCCCCcEE-E----ecCCcceEEEEEcCC
Confidence 46899999986 6999999999998854433333321 235668999999986 3 345679999976554
Q ss_pred C
Q 020596 282 K 282 (324)
Q Consensus 282 ~ 282 (324)
+
T Consensus 108 e 108 (131)
T PF10794_consen 108 E 108 (131)
T ss_pred C
Confidence 4
No 21
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=92.91 E-value=0.14 Score=39.67 Aligned_cols=55 Identities=29% Similarity=0.421 Sum_probs=42.9
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCCC
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 284 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Yf 284 (324)
|+-.|+|..+|.|.+|+.|.+.... ..+.||+||+..-- +.+|.|.|.|.--.|-
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~-------------------~~~~Td~~G~F~i~------~~~g~~~l~is~~Gy~ 56 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK-------------------KGTVTDENGRFSIK------LPEGDYTLKISYIGYE 56 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc-------------------ceEEECCCeEEEEE------EcCCCeEEEEEEeCEE
Confidence 6778999999999999999986321 34789999998632 4579999999655554
No 22
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=90.56 E-value=0.44 Score=37.17 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020596 214 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 214 ~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 260 (324)
.|+|++|++|+|+..+. ...-.+++++.||.+|+..
T Consensus 7 ~~~P~~~~~V~L~e~d~-----------~~~Ddll~~~~Td~~G~F~ 42 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDY-----------FDPDDLLDETKTDSDGNFE 42 (80)
T ss_pred CCccCCCCEEEEEECCC-----------CCCCceeEEEEECCCceEE
Confidence 69999999999986432 1123578999999998664
No 23
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=90.21 E-value=0.51 Score=42.97 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=36.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC---CCCceEEEEEEeCCCCCcCc
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD---VSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~---~~~~~~l~~~~Td~DGR~~~ 261 (324)
-|+-+|+|+ .|+|.+|..|++..-+....=+.+.... +..|..-+.-.||+|||..-
T Consensus 38 ~l~G~V~D~-~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F 97 (185)
T cd03463 38 TLEGRVYDG-DGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSF 97 (185)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEE
Confidence 467899997 5999999999997644321101111111 13454556778999999864
No 24
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=89.32 E-value=0.75 Score=40.96 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEe
Q 020596 201 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 279 (324)
Q Consensus 201 ~~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 279 (324)
.-.+++.-|| ..|+|.+|..|.+...+.. ......-...+||++|++.-.+ ..+|.|-|...
T Consensus 149 ~g~~~~~~vl--~~GkPl~~a~V~~~~~~~~----------~~~~~~~~~~~TD~~G~~~~~~-----~~~G~wli~a~ 210 (215)
T PF10670_consen 149 AGDPLPFQVL--FDGKPLAGAEVEAFSPGGW----------YDVEHEAKTLKTDANGRATFTL-----PRPGLWLIRAS 210 (215)
T ss_pred CCCEEEEEEE--ECCeEcccEEEEEEECCCc----------cccccceEEEEECCCCEEEEec-----CCCEEEEEEEE
Confidence 3456888888 8999999999999865421 0011114568999999998433 24899988753
No 25
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=88.28 E-value=2.9 Score=40.03 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=36.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 260 (324)
--|+..|+|+ .|+|.+|..|++..-+....=+.+..+ ...+..-+...||+|||..
T Consensus 105 l~l~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~~-~~~~~lRG~~~Td~~G~y~ 160 (256)
T cd03458 105 LFVHGTVTDT-DGKPLAGATVDVWHADPDGFYSQQDPD-QPEFNLRGKFRTDEDGRYR 160 (256)
T ss_pred EEEEEEEEcC-CCCCCCCcEEEEEccCCCCCcCCCCCC-CCCCCCEEEEEeCCCCCEE
Confidence 3467899997 699999999998764432110111111 2345556778999999965
No 26
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=88.17 E-value=0.73 Score=41.97 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=40.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeE
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFY 274 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y 274 (324)
.|...|+|..+|+|.+|+.|.+..-+....=+.+... .+..| +=+...||+||++.- ..+.||.|
T Consensus 28 ~l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~f-lRG~~~TD~~G~~~F-----~TI~PG~Y 99 (188)
T cd03457 28 TLDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETF-LRGVQPTDADGVVTF-----TTIFPGWY 99 (188)
T ss_pred EEEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCc-CEEEEEECCCccEEE-----EEECCCCC
Confidence 3578999999999999999998654322111222111 11222 345679999999863 23456655
No 27
>PRK03094 hypothetical protein; Provisional
Probab=87.83 E-value=0.53 Score=37.47 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=22.0
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhc
Q 020596 103 FIFIICASGRTAAEILAELKKRYT 126 (324)
Q Consensus 103 fpFVi~v~G~s~~eIL~~l~~RL~ 126 (324)
-.+||+|+|+|++||...+++||.
T Consensus 57 ~~pVI~A~G~TaeEI~~~ve~r~~ 80 (80)
T PRK03094 57 KGSVITASGLTADEICQQVESRLQ 80 (80)
T ss_pred CCcEEEcCCCCHHHHHHHHHHhhC
Confidence 368999999999999999999984
No 28
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=87.43 E-value=1.3 Score=43.97 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|+-+|.|. +|.|.+|..|.+.... ....||.||+.. . .+.+|.|+|++.-.
T Consensus 295 ~~~i~G~V~d~-~g~pv~~A~V~v~~~~-------------------~~~~td~~G~y~-~-----~l~~G~Y~l~vs~~ 348 (372)
T cd03868 295 HIGVKGFVRDA-SGNPIEDATIMVAGID-------------------HNVTTAKFGDYW-R-----LLLPGTYTITAVAP 348 (372)
T ss_pred CCceEEEEEcC-CCCcCCCcEEEEEecc-------------------cceEeCCCceEE-e-----cCCCEEEEEEEEec
Confidence 46789999998 7999999999985321 135999999984 2 25689999999877
Q ss_pred CCC
Q 020596 282 KYC 284 (324)
Q Consensus 282 ~Yf 284 (324)
.|=
T Consensus 349 Gf~ 351 (372)
T cd03868 349 GYE 351 (372)
T ss_pred CCC
Confidence 764
No 29
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=85.97 E-value=1.6 Score=37.91 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=41.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC----CCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEE
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD----VSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 275 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~----~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 275 (324)
.|+..|+|. .|+|.+|..|++..-+... -|++.. ...+..-+...||+||+..- ..+.||.|.
T Consensus 13 ~l~G~V~D~-~g~pv~~A~VeiW~~d~~G---~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f-----~ti~Pg~Y~ 79 (146)
T cd00421 13 TLTGTVLDG-DGCPVPDALVEIWQADADG---RYSGQDDSGLDPEFFLRGRQITDADGRYRF-----RTIKPGPYP 79 (146)
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCC---ccCCcCccccCCCCCCEEEEEECCCcCEEE-----EEEcCCCCC
Confidence 477899998 6889999999886544311 111111 12334567789999999863 245577777
No 30
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=85.63 E-value=1.5 Score=38.78 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC-------CCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEE
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD-------VSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 275 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~-------~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 275 (324)
.|+-.|+| ..|+|.+|..|++..-+... -|.+.. +.....-+...||+|||..-. .+.||.|.
T Consensus 17 ~l~g~V~D-~~g~Pv~~A~veiWqad~~G---~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~-----Ti~Pg~Y~ 86 (158)
T cd03459 17 ILEGRVLD-GDGRPVPDALVEIWQADAAG---RYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFR-----TIKPGAYP 86 (158)
T ss_pred EEEEEEEC-CCCCCCCCCEEEEEccCCCC---ccCCccCCcccccCCCCCceeEEEECCCCcEEEE-----EECCCCcC
Confidence 46788999 58999999999997644321 111111 123333467799999998732 33455555
No 31
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.59 E-value=1.4 Score=41.36 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=58.4
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCC---ccCC---CCceEEEEEEeCCCCCcCcCCCC--cCCCCCe----
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFG---ETDV---SGWVYQGSSTTNKDGRCGQLMGM--IEDLNPG---- 272 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~---~~~~---~~~~~l~~~~Td~DGR~~~~~~~--~~~~~~G---- 272 (324)
|.-+|||+. |+|.+|..|++-.-+... -|. ++.. .+|...+...||++||..-.... .-....+
T Consensus 75 l~G~VlD~~-G~Pv~~A~VEiWQAda~G---rY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~~~ 150 (226)
T COG3485 75 LEGRVLDGN-GRPVPDALVEIWQADADG---RYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGPMW 150 (226)
T ss_pred EEEEEECCC-CCCCCCCEEEEEEcCCCC---cccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCCcC
Confidence 568899998 999999999997644321 111 1111 23557788999999998753211 0011111
Q ss_pred ---e---------EEEEEeeCCCCC-CCCCceeEEEEEeec
Q 020596 273 ---F---------YKITFNTGKYCP-EGFFPYVSIVFEIRE 300 (324)
Q Consensus 273 ---~---------Y~l~F~t~~Yf~-~~F~p~V~V~F~i~~ 300 (324)
. +..++.|.-||. ++-+..=+|.+.|++
T Consensus 151 R~aHih~~v~~~g~~~~L~TqlYf~dd~~~~~dpi~~~v~~ 191 (226)
T COG3485 151 RPAHIHFSVFARGINTRLVTQLYFPDDPANARDPILALVPD 191 (226)
T ss_pred ccceeEEEEeCCcccceEEEEEecCCChhhccCchhcccCc
Confidence 1 244577888888 556677788888874
No 32
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=85.06 E-value=1.2 Score=40.37 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=35.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEE
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 275 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 275 (324)
-|..+|+|+ .|+|.+|..|++..-+....-+.+... ....+..-+...||+|||..- ..+.||.|.
T Consensus 31 ~l~G~V~D~-~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f-----~Ti~Pg~Y~ 97 (183)
T PF00775_consen 31 VLHGRVIDT-DGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSF-----RTIKPGPYP 97 (183)
T ss_dssp EEEEEEEET-TSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEE-----EEE----EE
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEE-----EeeCCCCCC
Confidence 467899996 699999999999765432111111111 111233447889999998852 134456655
No 33
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=84.94 E-value=1.9 Score=43.14 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=44.7
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|.-+|.|. +|.|.+|+.|++.... .....+||.+|... . .+.||.|.|++.-.
T Consensus 294 ~~gI~G~V~D~-~g~pi~~A~V~v~g~~-----------------~~~~~~T~~~G~y~--~----~l~pG~Y~v~vsa~ 349 (376)
T cd03866 294 HLGVKGQVFDS-NGNPIPNAIVEVKGRK-----------------HICPYRTNVNGEYF--L----LLLPGKYMINVTAP 349 (376)
T ss_pred cCceEEEEECC-CCCccCCeEEEEEcCC-----------------ceeEEEECCCceEE--E----ecCCeeEEEEEEeC
Confidence 45689999997 6999999999985311 12345899999882 2 26799999999877
Q ss_pred CCC
Q 020596 282 KYC 284 (324)
Q Consensus 282 ~Yf 284 (324)
.|=
T Consensus 350 Gy~ 352 (376)
T cd03866 350 GFK 352 (376)
T ss_pred Ccc
Confidence 763
No 34
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=84.70 E-value=3.8 Score=39.65 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 260 (324)
--|+..|+|+ .|+|.+|..|++..-+... .|...+ ...+..-+...||+|||..
T Consensus 121 l~v~G~V~D~-~G~Pv~gA~VeiWqad~~G---~Y~~~~~~~~~~~lRGr~~Td~~G~y~ 176 (277)
T cd03461 121 CFVHGRVTDT-DGKPLPGATVDVWQADPNG---LYDVQDPDQPEFNLRGKFRTDEDGRYA 176 (277)
T ss_pred EEEEEEEEcC-CCCCcCCcEEEEECcCCCC---CcCCCCCCCCCCCCeEEEEeCCCCCEE
Confidence 3467899996 6999999999987543221 111111 1344556778999999965
No 35
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.51 E-value=1.8 Score=40.46 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=34.8
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcCc
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~~ 261 (324)
|+-+|+|. .|+|.+|..|++..-+... -|.+. ....+..-+...||+|||..-
T Consensus 63 l~G~V~D~-~g~PV~~A~VEIWQada~G---~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F 122 (220)
T TIGR02422 63 VHGRVLDE-DGRPVPNTLVEVWQANAAG---RYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRF 122 (220)
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCC---cccCccCccccccCCCCCCEEEEEECCCccEEE
Confidence 45789997 5999999999997654321 11111 112344467788999999763
No 36
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.74 E-value=2.1 Score=40.11 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=34.9
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcCc
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~~ 261 (324)
|+.+|+|. .|+|.+|..|++..-+... -|.+. ....+..-+...||+|||..-
T Consensus 68 l~G~V~D~-~G~PV~~A~VEIWQad~~G---~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F 127 (220)
T cd03464 68 VHGRVLDE-DGRPVPNTLVEIWQANAAG---RYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRF 127 (220)
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCC---cccCccCCcccccCCCCCCEEEEEECCCccEEE
Confidence 45789994 8999999999997654321 11111 112344456789999999763
No 37
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=83.60 E-value=1.9 Score=42.78 Aligned_cols=56 Identities=30% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
..|+-+|.|. .|.|.+|..|.+... + ....||.||+..- .+.+|.|+|++.-..
T Consensus 298 ~~i~G~V~d~-~g~pl~~A~V~i~~~----------------~---~~~~Td~~G~f~~------~l~~G~y~l~vs~~G 351 (374)
T cd03858 298 RGIKGFVRDA-NGNPIANATISVEGI----------------N---HDVTTAEDGDYWR------LLLPGTYNVTASAPG 351 (374)
T ss_pred CceEEEEECC-CCCccCCeEEEEecc----------------e---eeeEECCCceEEE------ecCCEeEEEEEEEcC
Confidence 3799999998 699999999998421 1 2368999999962 135899999998777
Q ss_pred CC
Q 020596 283 YC 284 (324)
Q Consensus 283 Yf 284 (324)
|-
T Consensus 352 y~ 353 (374)
T cd03858 352 YE 353 (374)
T ss_pred cc
Confidence 64
No 38
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=81.83 E-value=3.1 Score=41.76 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=45.3
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|.-.|.|..+|.|..|..|.+.... . ..+||.||...- .+.||.|.|++.--
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~--------------~-----~~~Td~~G~f~~------~l~pG~ytl~vs~~ 350 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADIN--------------H-----PVTTYKDGDYWR------LLVPGTYKVTASAR 350 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCc--------------C-----ceEECCCccEEE------ccCCeeEEEEEEEc
Confidence 4578999999999999999999985321 1 257999998852 25689999998777
Q ss_pred CCC
Q 020596 282 KYC 284 (324)
Q Consensus 282 ~Yf 284 (324)
.|=
T Consensus 351 GY~ 353 (375)
T cd03863 351 GYD 353 (375)
T ss_pred Ccc
Confidence 663
No 39
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.75 E-value=2.7 Score=38.51 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=34.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC-------CCCceEEEEEEeCCCCCcC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD-------VSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~-------~~~~~~l~~~~Td~DGR~~ 260 (324)
-|+-+|+|. .|+|.+|..|++..-+... -|++.. ...+..-+...||+||+..
T Consensus 41 ~l~G~V~D~-~g~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~ 100 (193)
T TIGR02423 41 RLEGRVLDG-DGHPVPDALIEIWQADAAG---RYNSPADLRAPATDPGFRGWGRTGTDESGEFT 100 (193)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEccCCCC---ccCCccCCcccccCCCCCCeEEEEECCCCCEE
Confidence 467899997 6999999999997644221 111111 1233344567899999975
No 40
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=81.55 E-value=1.9 Score=41.79 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=35.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 260 (324)
-|+..|+|+ .|+|.+|..|++..-+....-+.+..+ ...+..-+...||+|||..
T Consensus 126 ~l~G~V~D~-~G~PI~~A~VeiWqad~~G~Ys~~~~~-~~~f~~RGr~~TD~~G~y~ 180 (282)
T cd03460 126 VMHGTVTDT-DGKPVPGAKVEVWHANSKGFYSHFDPT-QSPFNLRRSIITDADGRYR 180 (282)
T ss_pred EEEEEEECC-CCCCcCCcEEEEECCCCCCCcCCCCCC-CCCCCCceEEEeCCCCCEE
Confidence 467899996 699999999999764432111111111 1234456678999999965
No 41
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=81.24 E-value=2.2 Score=41.42 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=36.0
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 260 (324)
-|+..|+|+ .|+|.+|..|++..-+... -|++.+ ...+..-+...||+|||..
T Consensus 130 ~v~G~V~D~-~G~PI~gA~VeIWqad~~G---~Ys~~~~~~~~~~lRG~~~TD~~G~y~ 184 (285)
T TIGR02439 130 FLHGQVTDA-DGKPIAGAKVELWHANTKG---NYSHFDKSQSEFNLRRTIITDAEGRYR 184 (285)
T ss_pred EEEEEEECC-CCCCcCCcEEEEEccCCCC---CcCCCCCCCCCCCceEEEEECCCCCEE
Confidence 467899996 5999999999997644321 122111 1234456788999999965
No 42
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=81.18 E-value=2.4 Score=34.27 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=37.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEE---EEEeCCCCCcCcCCCCcCCCCCeeEEEEE
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQG---SSTTNKDGRCGQLMGMIEDLNPGFYKITF 278 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~---~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 278 (324)
...|+..|.| ..|.|.+|+.|.+..... .-.... ...||++|...--+ ..-.+|.|.+.-
T Consensus 24 ~~tltatV~D-~~gnpv~g~~V~f~~~~~-------------~~~l~~~~~~~~Td~~G~a~~tl---tst~aG~~~VtA 86 (100)
T PF02369_consen 24 TNTLTATVTD-ANGNPVPGQPVTFSSSSS-------------GGTLSPTNTSATTDSNGIATVTL---TSTKAGTYTVTA 86 (100)
T ss_dssp -EEEEEEEEE-TTSEB-TS-EEEE--EES-------------SSEES-CEE-EEE-TTSEEEEEE---E-SS-EEEEEEE
T ss_pred cEEEEEEEEc-CCCCCCCCCEEEEEEcCC-------------CcEEecCccccEECCCEEEEEEE---EecCceEEEEEE
Confidence 3679999999 569999999999822211 111111 47999999987433 233689999987
Q ss_pred eeC
Q 020596 279 NTG 281 (324)
Q Consensus 279 ~t~ 281 (324)
.+.
T Consensus 87 ~~~ 89 (100)
T PF02369_consen 87 TVD 89 (100)
T ss_dssp EET
T ss_pred EEC
Confidence 654
No 43
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=80.71 E-value=2.5 Score=40.95 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=35.6
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 260 (324)
--|+..|+|+ .|+|.+|..|++..-+... .|+..+ ...|..=+...||+|||..
T Consensus 133 l~v~G~V~D~-~G~Pv~gA~VdiWqada~G---~Ys~~~~~~~~~~lRGr~~TDadG~y~ 188 (281)
T TIGR02438 133 LVFSGQVTDL-DGNGLAGAKVELWHADDDG---FYSQFAPGIPEWNLRGTIIADDEGRFE 188 (281)
T ss_pred EEEEEEEEcC-CCCCcCCCEEEEEecCCCC---CcCCCCCCCCCCCCeEEEEeCCCCCEE
Confidence 3467899996 5999999999997543221 111111 1233345778999999965
No 44
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=80.63 E-value=5.8 Score=34.50 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=45.2
Q ss_pred eccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCCC
Q 020596 209 VLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 284 (324)
Q Consensus 209 VLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Yf 284 (324)
||=--.|+|.+|..|.|......+ .-=-...++..|+++|+-. -.+.||.|++...+..|.
T Consensus 8 vL~dg~G~pv~g~~I~L~A~~tS~---------~Vv~~t~as~~t~~~G~Ys------~~~epG~Y~V~l~~~g~~ 68 (134)
T PF08400_consen 8 VLKDGAGKPVPGCTITLKARRTSS---------TVVVGTVASVVTGEAGEYS------FDVEPGVYRVTLKVEGRP 68 (134)
T ss_pred EEeCCCCCcCCCCEEEEEEccCch---------heEEEEEEEEEcCCCceEE------EEecCCeEEEEEEECCCC
Confidence 455568999999999997765310 0012457888999999774 256799999999998874
No 45
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=80.52 E-value=2.6 Score=40.12 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCc
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 261 (324)
--|+..|+| ..|+|.+|..|++..-+....-+.+..+. ..+..=+...||+|||..-
T Consensus 99 l~v~G~V~D-~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~-~~~~lRG~~~Td~~G~y~F 155 (246)
T TIGR02465 99 LLIRGTVRD-LSGTPVAGAVIDVWHSTPDGKYSGFHDNI-PDDYYRGKLVTAADGSYEV 155 (246)
T ss_pred EEEEEEEEc-CCCCCcCCcEEEEECCCCCCCCCCCCCCC-CCCCCeEEEEECCCCCEEE
Confidence 346789999 58999999999997644321101111111 1233346789999999763
No 46
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=80.11 E-value=2.7 Score=31.02 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCEEEEEEecCCCCCCCCCccCCCCceEEE--EEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC-CCCCCCCceeEEE
Q 020596 219 AGVEVRLEMWKGIQPRPLFGETDVSGWVYQG--SSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK-YCPEGFFPYVSIV 295 (324)
Q Consensus 219 ~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~--~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~-Yf~~~F~p~V~V~ 295 (324)
+|+.++|+..++ ..+. +..||+||.+.- ..+.+|.|+|+.-... -| -...-.+.
T Consensus 2 ~Ga~f~L~~~~~---------------~~~~~~~~~Td~~G~~~f-----~~L~~G~Y~l~E~~aP~GY---~~~~~~~~ 58 (70)
T PF05738_consen 2 AGATFELYDEDG---------------NEVIEVTVTTDENGKYTF-----KNLPPGTYTLKETKAPDGY---QLDDTPYE 58 (70)
T ss_dssp STEEEEEEETTS---------------EEEEEEEEEGGTTSEEEE-----EEEESEEEEEEEEETTTTE---EEEECEEE
T ss_pred CCeEEEEEECCC---------------CEEEEEEEEECCCCEEEE-----eecCCeEEEEEEEECCCCC---EECCCceE
Confidence 689999986432 1222 589999998852 3568999999997632 22 12233445
Q ss_pred EEeec
Q 020596 296 FEIRE 300 (324)
Q Consensus 296 F~i~~ 300 (324)
|.|..
T Consensus 59 ~~i~~ 63 (70)
T PF05738_consen 59 FTITE 63 (70)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 66655
No 47
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=77.19 E-value=2.6 Score=33.47 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.2
Q ss_pred eEEEEecCCCHHHHHHHHHHHhc
Q 020596 104 IFIICASGRTAAEILAELKKRYT 126 (324)
Q Consensus 104 pFVi~v~G~s~~eIL~~l~~RL~ 126 (324)
..||=|.|+|.+||...+++||+
T Consensus 58 ~pVInA~G~T~eEI~~~v~~rl~ 80 (80)
T PF03698_consen 58 VPVINASGLTAEEIVQEVEERLQ 80 (80)
T ss_pred ceEEecCCCCHHHHHHHHHHhhC
Confidence 37999999999999999999985
No 48
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=75.78 E-value=6.9 Score=30.85 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=46.4
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|+..|+|- .|.|.+|..|++..-.+. ...+. -....||.+||+.-.+. .-.+|.|.++....
T Consensus 19 ~~~i~v~v~D~-~Gnpv~~~~V~f~~~~~~--~~~~~---------~~~~~Td~~G~a~~~l~---~~~~G~~~vta~~~ 83 (92)
T smart00634 19 AITLTATVTDA-NGNPVAGQEVTFTTPSGG--ALTLS---------KGTATTDANGIATVTLT---STTAGVYTVTASLE 83 (92)
T ss_pred cEEEEEEEECC-CCCCcCCCEEEEEECCCc--eeecc---------CCeeeeCCCCEEEEEEE---CCCCcEEEEEEEEC
Confidence 46899999996 699999999988653210 00000 13358999999986553 34789999988766
Q ss_pred CC
Q 020596 282 KY 283 (324)
Q Consensus 282 ~Y 283 (324)
.+
T Consensus 84 ~~ 85 (92)
T smart00634 84 NG 85 (92)
T ss_pred CC
Confidence 54
No 49
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=75.02 E-value=4.3 Score=38.64 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=35.3
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 260 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 260 (324)
--|+..|+|. .|+|.+|..|++..-+... -|++.+ ...+..=+...||+|||..
T Consensus 100 l~l~G~V~D~-~G~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~~RG~~~Td~~G~y~ 155 (247)
T cd03462 100 LLFRGTVKDL-AGAPVAGAVIDVWHSTPDG---KYSGFHPNIPEDYYRGKIRTDEDGRYE 155 (247)
T ss_pred EEEEEEEEcC-CCCCcCCcEEEEECCCCCC---CcCCCCCCCCCCCCEEEEEeCCCCCEE
Confidence 4467899996 7999999999987643321 111111 1233344567999999975
No 50
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=73.99 E-value=3.1 Score=29.86 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEe
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMW 228 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~ 228 (324)
-+|++|+.|. .|.|.+++.+.|.+-
T Consensus 15 I~ltVt~kda-~G~pv~n~~f~l~r~ 39 (47)
T PF05688_consen 15 IPLTVTVKDA-NGNPVPNAPFTLTRG 39 (47)
T ss_pred EEEEEEEECC-CCCCcCCceEEEEec
Confidence 3699999999 999999999999874
No 51
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=73.18 E-value=7.1 Score=39.46 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCC
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 282 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~ 282 (324)
..|+-+|.|. .|.|..|..|.+.... ...+||.+|.. |. .+.||.|+|++.--.
T Consensus 316 ~gI~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~T~~~G~y--~r----~l~pG~Y~l~vs~~G 369 (392)
T cd03864 316 QGIKGMVTDE-NNNGIANAVISVSGIS-------------------HDVTSGTLGDY--FR----LLLPGTYTVTASAPG 369 (392)
T ss_pred CeEEEEEECC-CCCccCCeEEEEECCc-------------------cceEECCCCcE--Ee----cCCCeeEEEEEEEcC
Confidence 4688899996 5999999999985321 12589999977 32 356899999987776
Q ss_pred CCCCCCCceeEEEEEeec
Q 020596 283 YCPEGFFPYVSIVFEIRE 300 (324)
Q Consensus 283 Yf~~~F~p~V~V~F~i~~ 300 (324)
|- .+.+.+.|..
T Consensus 370 y~------~~t~~v~V~~ 381 (392)
T cd03864 370 YQ------PSTVTVTVGP 381 (392)
T ss_pred ce------eEEEEEEEcC
Confidence 54 2444455543
No 52
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=71.79 E-value=6.6 Score=39.60 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=43.5
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|+-+|+|. .|.|..|..|.+.... ....||.+|.... .+.+|.|.|++.--
T Consensus 317 ~~~i~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~Td~~G~y~~------~l~~G~y~l~vs~~ 370 (395)
T cd03867 317 HRGIKGFVKDK-DGNPIKGARISVRGIR-------------------HDITTAEDGDYWR------LLPPGIHIVSAQAP 370 (395)
T ss_pred cceeEEEEEcC-CCCccCCeEEEEeccc-------------------cceEECCCceEEE------ecCCCcEEEEEEec
Confidence 34688999996 5999999999985321 1368999998842 24689999999877
Q ss_pred CCC
Q 020596 282 KYC 284 (324)
Q Consensus 282 ~Yf 284 (324)
.|-
T Consensus 371 Gy~ 373 (395)
T cd03867 371 GYT 373 (395)
T ss_pred Cee
Confidence 764
No 53
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=70.71 E-value=6.5 Score=39.25 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|+-+|.|. +|.|..|+.|.+... . ...||.+|...-. +.||.|+|++.-.
T Consensus 286 ~~gI~G~V~d~-~g~pi~~A~V~v~g~---------------~-----~~~T~~~G~y~~~------L~pG~y~v~vs~~ 338 (363)
T cd06245 286 HKGVHGVVTDK-AGKPISGATIVLNGG---------------H-----RVYTKEGGYFHVL------LAPGQHNINVIAE 338 (363)
T ss_pred CcEEEEEEEcC-CCCCccceEEEEeCC---------------C-----ceEeCCCcEEEEe------cCCceEEEEEEEe
Confidence 34688999997 799999999988521 1 3579999977522 5689999999887
Q ss_pred CCC
Q 020596 282 KYC 284 (324)
Q Consensus 282 ~Yf 284 (324)
.|-
T Consensus 339 Gy~ 341 (363)
T cd06245 339 GYQ 341 (363)
T ss_pred Cce
Confidence 775
No 54
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=66.04 E-value=8.5 Score=35.98 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=44.2
Q ss_pred CCCceeeeccCCCCCCCC----CCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEE
Q 020596 202 RLPITTHVLDVSQGSPAA----GVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 277 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~----gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 277 (324)
.+.|+-+|+|..+|.|.. |++++|+..+ |..++. -.-....||-... ..+=+|.|+|+
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~g-------y~~~~~------~~~~v~qDGtf~n-----~~lF~G~Yki~ 82 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELG-------YGDNTP------QDVYVKQDGTFRN-----TKLFDGDYKIV 82 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS--------CCG--S------EEEEB-TTSEEEE-----EEE-SEEEEEE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecc-------cccCCC------cceEEccCCceee-----eeEeccceEEE
Confidence 357999999999998754 8999887643 221111 1236788886632 22347999999
Q ss_pred EeeCCC-CCCCCCceeEEEEEee
Q 020596 278 FNTGKY-CPEGFFPYVSIVFEIR 299 (324)
Q Consensus 278 F~t~~Y-f~~~F~p~V~V~F~i~ 299 (324)
+.-|.+ |. +|.=+|.+.|+
T Consensus 83 ~~~G~fp~~---~~~dti~v~i~ 102 (222)
T PF12866_consen 83 PKNGNFPWV---VPVDTIEVDIK 102 (222)
T ss_dssp E-CTSCSBS---CCE--EEEEES
T ss_pred EcCCCCccc---CCCccEEEEec
Confidence 988887 21 34444444454
No 55
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=65.22 E-value=28 Score=29.33 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEE
Q 020596 203 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITF 278 (324)
Q Consensus 203 ~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 278 (324)
..++.++.| ..|.|..+..++|...... +.....-..-...++|+....+ ..+.+|.|.|+.
T Consensus 69 ~~~~i~~~d-~~g~~~~~~~~~l~l~rp~----------~~~~D~~~~l~~~~~g~y~~~~---~~~~~G~W~l~l 130 (146)
T PF05751_consen 69 NSLTIRLTD-PNGAPVSGAKLTLSLYRPT----------DAKLDFTLTLTESAPGVYRAPV---PLLKKGRWYLRL 130 (146)
T ss_pred CeEEEEEEc-CCCCcCcCceEEEEEECCC----------CccCCeeEEeeECCCceEEEEc---CCCCCccEEEEE
Confidence 679999999 9999999999888654321 1111112223367888776543 244789999988
No 56
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=63.79 E-value=15 Score=34.02 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhcCChHHHH
Q 020596 82 ANESSSQELSDWNNRYRLRF--GFIFIICASGRTAAEILAELKKRYTNRPIIEF 133 (324)
Q Consensus 82 ~~~~~~~~L~~LN~~Ye~kF--GfpFVi~v~G~s~~eIL~~l~~RL~N~~e~E~ 133 (324)
+-.++.+.| +.|.+++ |.|||++-..-...-+++.|++++..++-..+
T Consensus 76 ay~DV~~AF----~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~r 125 (207)
T PF11288_consen 76 AYSDVRAAF----DYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDPLRKR 125 (207)
T ss_pred hHHHHHHHH----HHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCchHHhh
Confidence 445566666 7899999 99999997777788889999999998874433
No 57
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=60.29 E-value=17 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 248 QGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 248 l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
..-+.||.||+..- ..+.||.|+|.-...
T Consensus 41 qYwt~td~~G~Fti-----~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 41 QYWTRTDSDGNFTI-----PNVRPGTYRLYAYAD 69 (95)
T ss_dssp EEEEE--TTSEEE--------B-SEEEEEEEEE-
T ss_pred cEEEEeCCCCcEEe-----CCeeCcEeEEEEEEe
Confidence 34478999999862 367899999998883
No 58
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=59.88 E-value=23 Score=36.98 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=52.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
...|--=|.| .+|+|.++..|++..++. .-+|..+|-- | .=+.||.|.|++...
T Consensus 377 H~GIkG~V~D-~~G~~I~NA~IsV~ginH-------------------dv~T~~~GDY--W----RLL~PG~y~vta~A~ 430 (500)
T KOG2649|consen 377 HRGIKGLVFD-DTGNPIANATISVDGINH-------------------DVTTAKEGDY--W----RLLPPGKYIITASAE 430 (500)
T ss_pred HhccceeEEc-CCCCccCceEEEEecCcC-------------------ceeecCCCce--E----EeeCCcceEEEEecC
Confidence 4567778999 999999999999875432 1367777733 2 234689999999999
Q ss_pred CCCC------CCCCceeEEEEEeecC
Q 020596 282 KYCP------EGFFPYVSIVFEIRES 301 (324)
Q Consensus 282 ~Yf~------~~F~p~V~V~F~i~~~ 301 (324)
.|-. -++-...-|.|.+...
T Consensus 431 Gy~~~tk~v~V~~~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 431 GYDPVTKTVTVPPDRAARVNFTLQRS 456 (500)
T ss_pred CCcceeeEEEeCCCCccceeEEEecC
Confidence 9987 1235555667777653
No 59
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=58.93 E-value=26 Score=28.27 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=41.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
-|+--|+ ..|.|.+|=-|+|.- ++-+..++-.|.+.|....+. .||.|+|+--+-
T Consensus 9 VItG~V~--~~G~Pv~gAyVRLLD---------------~sgEFtaEvvts~~G~FRFfa------apG~WtvRal~~ 63 (85)
T PF07210_consen 9 VITGRVT--RDGEPVGGAYVRLLD---------------SSGEFTAEVVTSATGDFRFFA------APGSWTVRALSR 63 (85)
T ss_pred EEEEEEe--cCCcCCCCeEEEEEc---------------CCCCeEEEEEecCCccEEEEe------CCCceEEEEEcc
Confidence 3666677 899999999999852 133457899999999988432 489999987543
No 60
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=57.92 E-value=19 Score=36.57 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=42.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 283 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Y 283 (324)
.|+-+|.|. .|.|.+|..|.+..... ..+||.+|--.- .+.||.|+|+..-..|
T Consensus 327 gI~G~V~D~-~g~pI~~AtV~V~g~~~-------------------~~~T~~~G~Y~~------~L~pG~Ytv~vsa~Gy 380 (402)
T cd03865 327 GVKGFVKDL-QGNPIANATISVEGIDH-------------------DITSAKDGDYWR------LLAPGNYKLTASAPGY 380 (402)
T ss_pred ceEEEEECC-CCCcCCCeEEEEEcCcc-------------------ccEECCCeeEEE------CCCCEEEEEEEEecCc
Confidence 489999996 69999999999864321 147999997752 3568999999988887
Q ss_pred C
Q 020596 284 C 284 (324)
Q Consensus 284 f 284 (324)
-
T Consensus 381 ~ 381 (402)
T cd03865 381 L 381 (402)
T ss_pred c
Confidence 5
No 61
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=57.45 E-value=61 Score=25.31 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=34.8
Q ss_pred cCCC-CCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEE-EeCCCCCcCcCCCCcCCCCCeeEEEEEeeC
Q 020596 211 DVSQ-GSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSS-TTNKDGRCGQLMGMIEDLNPGFYKITFNTG 281 (324)
Q Consensus 211 Dt~~-G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~-~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~ 281 (324)
|... ..|..+..|.+...+.. +.-..-... .+|.+|.+..-+........|.|+|+..++
T Consensus 25 ~~~~~~~~~~~~~~~v~i~dp~-----------g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 25 DLDNDFKPPANSPVTVTIKDPS-----------GNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EECTTCSCESSEEEEEEEEETT-----------SEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ccccccccccCCceEEEEECCC-----------CCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 5552 56778888888765431 111112223 568999887544334566789999999985
No 62
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=52.83 E-value=22 Score=30.95 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHHH
Q 020596 7 VLDEEELLGCCG-STKFAKEMASASPFASLNQAVS 40 (324)
Q Consensus 7 ~m~~~~f~~~~~-spw~A~~~~~~RPF~s~~~L~~ 40 (324)
+++.++|..+-| -|..|.++..+.||.|+++|++
T Consensus 57 ~A~~~el~~lpGigP~~A~~IV~nGpf~sveDL~~ 91 (132)
T PRK02515 57 NSSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN 91 (132)
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHc
Confidence 478888888778 6999999999999999999973
No 63
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=52.13 E-value=7.7 Score=28.90 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=27.3
Q ss_pred CCCHHHHHHhhC-CHHHHHHHHhcC----CCCCHHHHHH
Q 020596 7 VLDEEELLGCCG-STKFAKEMASAS----PFASLNQAVS 40 (324)
Q Consensus 7 ~m~~~~f~~~~~-spw~A~~~~~~R----PF~s~~~L~~ 40 (324)
+.+.+++..+.| ++..|+++.+.| ||.|+++|..
T Consensus 10 ~as~~eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~~ 48 (65)
T PF12836_consen 10 TASAEELQALPGIGPKQAKAIVEYREKNGPFKSLEDLKE 48 (65)
T ss_dssp TS-HHHHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGGG
T ss_pred cCCHHHHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHhh
Confidence 478889988877 899999999999 9999999873
No 64
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=49.94 E-value=40 Score=40.19 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCc
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 261 (324)
...+..+|--..+|+|++|++|.+... ..+.+.+++||++|++..
T Consensus 304 ~~~l~v~v~sl~sg~P~~g~~v~~~~~---------------ngevl~~~~tds~G~~~~ 348 (1621)
T COG2373 304 HDGLDVFVQSLSSGKPVPGVEVSVLAG---------------NGEVLVSGTTDSQGHAKF 348 (1621)
T ss_pred cccEEEEEEeccCCCCCCCcEEEEEec---------------CCcEEeeeEEccccceec
Confidence 455889999999999999999998643 345799999999998874
No 65
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=45.67 E-value=41 Score=23.85 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCHHHHHHHH-----HHHHHHHHhcCCeEEEEecCCC
Q 020596 82 ANESSSQELS-----DWNNRYRLRFGFIFIICASGRT 113 (324)
Q Consensus 82 ~~~~~~~~L~-----~LN~~Ye~kFGfpFVi~v~G~s 113 (324)
++++|+.+|. ....+-..+-|+||++.+.|+-
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~~G~p 39 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVVRADGRP 39 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECCCCCE
Confidence 4666666663 3445566778999999999964
No 66
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=42.82 E-value=18 Score=34.41 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCC-------hHHHHHHHHH
Q 020596 83 NESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNR-------PIIEFEIAAQ 138 (324)
Q Consensus 83 ~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~N~-------~e~E~~~Al~ 138 (324)
.-+.+..+..+-..=+.|=|||=+|++.|++.++|.+.++.-+... -+.|..+++.
T Consensus 28 ~~~~~~~~~k~D~~R~~RtG~pEvv~a~gKt~eqi~~i~~~~~~~~~~~l~tR~~~e~~~~l~ 90 (254)
T COG1691 28 AFESLGEFAKLDIHREKRTGFPEVVFAPGKTPEQIVEIVEVLLEKNGIALATRVSPELLEALK 90 (254)
T ss_pred hhhhhchhhhccchhhccCCCceEeecCCCCHHHHHHHHHHHHHcCCeeeeecCCHHHHHHhh
Confidence 3344555555555556677999999999999999988888777644 3556666553
No 67
>PF13446 RPT: A repeated domain in UCH-protein
Probab=42.16 E-value=57 Score=23.84 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=32.8
Q ss_pred cCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhH
Q 020596 110 SGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 151 (324)
Q Consensus 110 ~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l 151 (324)
...+-+.|+...+.++.++| .....+.+-+..||..|=.+.
T Consensus 15 ~~~~Dd~Ii~~f~~~~~~~P-~~~~~~r~AL~~Ia~~R~S~~ 55 (62)
T PF13446_consen 15 EDTDDDFIISAFQSKVNDDP-SQKDTLREALRVIAESRNSDR 55 (62)
T ss_pred CCCCHHHHHHHHHHHHHcCh-HhHHHHHHHHHHHHHHcCCHH
Confidence 45567899999999999988 577778888888998874443
No 68
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=40.23 E-value=84 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred hhHHHHHhhCCCCCCCCcchHHhhHhhccCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 020596 53 NGWLDAFSAHPQIGQSPWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICAS 110 (324)
Q Consensus 53 ~~~l~ll~aHP~LG~s~~S~~EQa~al~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~ 110 (324)
.|..-.|-.||+ .+++ + ..=.+-..++.++.++|+++||=-..-++.
T Consensus 16 ~dl~LyLDTHP~--------d~~A--l-~~y~~~~~~~~~l~~~Ye~~yGPLt~~~~~ 62 (78)
T PF12652_consen 16 VDLNLYLDTHPD--------DQEA--L-EYYNEYSKQRKQLKKEYEKRYGPLTNFGVS 62 (78)
T ss_pred HHHHHHhcCCCC--------cHHH--H-HHHHHHHHHHHHHHHHHHHHhCCCcCCCcC
Confidence 355678889998 1222 2 123445678899999999999965554443
No 69
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=39.61 E-value=55 Score=25.96 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=27.1
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCc
Q 020596 214 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 261 (324)
Q Consensus 214 ~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 261 (324)
...|..|+.|.|.-.+. ++.-....++.||.+|...-
T Consensus 17 ~~~~l~GA~V~v~C~~~-----------~~~~~~~~~~~Td~~G~F~i 53 (97)
T PF01190_consen 17 AAKPLPGAKVSVECKDG-----------NGGVVFSAEAKTDENGYFSI 53 (97)
T ss_pred cCccCCCCEEEEECCCC-----------CCCcEEEEEEEeCCCCEEEE
Confidence 46799999999987542 11236788899999996653
No 70
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=37.89 E-value=28 Score=29.82 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=25.5
Q ss_pred CCHHHHHHhhC------CHHHHHHHHhcCCCCCH
Q 020596 8 LDEEELLGCCG------STKFAKEMASASPFASL 35 (324)
Q Consensus 8 m~~~~f~~~~~------spw~A~~~~~~RPF~s~ 35 (324)
|..+|+.+|.| +.|+-+.=|..-|+.-+
T Consensus 1 MT~eELA~~tG~srQTINrWvRkegW~T~p~pGV 34 (122)
T PF07037_consen 1 MTPEELAELTGYSRQTINRWVRKEGWKTEPKPGV 34 (122)
T ss_pred CCHHHHHHHhCccHHHHHHHHHhcCceeccCCcc
Confidence 78999999999 69999999999999866
No 71
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=37.64 E-value=74 Score=31.55 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=61.3
Q ss_pred CCHHHHHHHHH------------HHHHHHHhc-CCeEE-------EEecCCC-HHHHHHHHHHHhcC-------------
Q 020596 82 ANESSSQELSD------------WNNRYRLRF-GFIFI-------ICASGRT-AAEILAELKKRYTN------------- 127 (324)
Q Consensus 82 ~~~~~~~~L~~------------LN~~Ye~kF-GfpFV-------i~v~G~s-~~eIL~~l~~RL~N------------- 127 (324)
.+++++++++- ..+.|-+-| ||-|+ |.|+-.+ ..+++++||.||--
T Consensus 126 ~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~ 205 (333)
T COG2605 126 LGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVI 205 (333)
T ss_pred CCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchhHHH
Confidence 56777776653 356899999 99998 4455445 68999999998741
Q ss_pred --------ChHHHHHHHHHHHHHHHHHHHHhHhcccccCCccccccch-hhhhchhhHH
Q 020596 128 --------RPIIEFEIAAQEQMKITELRLAKLFSAKAKASSATFQYSA-TAKTAEDRVS 177 (324)
Q Consensus 128 --------~~e~E~~~Al~Ev~kIa~~RL~~l~~~~~~~~~~~~~~~~-~~~~~~~r~~ 177 (324)
+.++|..+++.||++.|. |+.+.|-..+ . .+|.... ..|+.+.+++
T Consensus 206 ~dQ~~~~~~~~~~~~e~~~~mk~~A~-~~~~al~~nd-~--~~f~~~l~~gW~~KK~ls 260 (333)
T COG2605 206 EDQVRNVVDGDEETLEALHEMKALAY-EMKDALVRND-I--PEFGQILDRGWEAKKKLS 260 (333)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHH-HHHHHHHhcc-h--HHHHHHHHhHHHhhhhhc
Confidence 246777889999998875 5555544322 2 2344433 6677666654
No 72
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=35.65 E-value=1.1e+02 Score=28.65 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=37.5
Q ss_pred HHHHHHhcCCeEEEEecCCC------HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 020596 94 NNRYRLRFGFIFIICASGRT------AAEILAELKKRYTNRPIIEFEIAAQEQMKITELRL 148 (324)
Q Consensus 94 N~~Ye~kFGfpFVi~v~G~s------~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL 148 (324)
|-.-.+||+|||||+..-.| ..+|.+..+ =+ .=...|...+|.+..+|..-||
T Consensus 158 ~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~-~i-Gme~~ea~~~Ls~~p~~i~~~~ 216 (216)
T PRK03892 158 AWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGI-NI-GMEIPQAKASLSFYPRIILKRL 216 (216)
T ss_pred HHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHH-Hh-CCCHHHHHHHHHHhHHHHhhcC
Confidence 56677899999999998654 455554432 22 3346788889999888876664
No 73
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=34.95 E-value=81 Score=32.20 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=39.7
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 283 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Y 283 (324)
.|--=|.|. +|.|.+|-.|.+..++. .-+|..+|--=. -+.||.|+|+..-..|
T Consensus 330 GikG~V~d~-~g~~i~~a~i~v~g~~~-------------------~v~t~~~GdywR------ll~pG~y~v~~~a~gy 383 (405)
T cd03869 330 GIKGVVRDK-TGKGIPNAIISVEGINH-------------------DIRTASDGDYWR------LLNPGEYRVTAHAEGY 383 (405)
T ss_pred CceEEEECC-CCCcCCCcEEEEecCcc-------------------ceeeCCCCceEE------ecCCceEEEEEEecCC
Confidence 466679998 99999998887754321 135667774422 3468999999998888
Q ss_pred CC
Q 020596 284 CP 285 (324)
Q Consensus 284 f~ 285 (324)
..
T Consensus 384 ~~ 385 (405)
T cd03869 384 TS 385 (405)
T ss_pred Cc
Confidence 64
No 74
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=31.31 E-value=26 Score=34.85 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEE
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLE 226 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~ 226 (324)
.--.||||..+|.|+..-.+++.
T Consensus 256 ~ry~HilDP~TG~P~~~~~~sVT 278 (337)
T COG1477 256 KRYHHILDPKTGYPIEHDLASVT 278 (337)
T ss_pred EEEeeecCCCCCCCCcCCcceEE
Confidence 34589999999999995444443
No 75
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=80 Score=35.55 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=42.3
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCC
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 283 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Y 283 (324)
.+|-.|||.+.|.|..|+.|.+.... .+.||++|-.+- .+-...|+|.|.-.-..|
T Consensus 317 SvtGRVl~g~~g~~l~gvvvlvngk~--------------------~~kTdaqGyykL----en~~t~gtytI~a~kehl 372 (1165)
T KOG1948|consen 317 SVTGRVLVGSKGLPLSGVVVLVNGKS--------------------GGKTDAQGYYKL----ENLKTDGTYTITAKKEHL 372 (1165)
T ss_pred EeeeeEEeCCCCCCccceEEEEcCcc--------------------cceEcccceEEe----eeeeccCcEEEEEeccce
Confidence 46789999999999999999874321 268999997761 123678999998765544
No 76
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=29.63 E-value=83 Score=27.07 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=27.6
Q ss_pred CCceEEEE--EEeCCCCCcCcC-----------CCCcCCC--------------CCeeEEEEEeeCCCCC
Q 020596 243 SGWVYQGS--STTNKDGRCGQL-----------MGMIEDL--------------NPGFYKITFNTGKYCP 285 (324)
Q Consensus 243 ~~~~~l~~--~~Td~DGR~~~~-----------~~~~~~~--------------~~G~Y~l~F~t~~Yf~ 285 (324)
..|++++. ..||+|||+... +.+++++ ..|.|.|.=+-|.=|.
T Consensus 42 ~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~M~GhY~M~~e~G~~F~ 111 (126)
T COG2967 42 VPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDEDGETFD 111 (126)
T ss_pred ccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcceEEEEEEEecCCCcEEE
Confidence 45555554 489999999863 1122221 1388999888888765
No 77
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=29.62 E-value=37 Score=30.41 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.3
Q ss_pred CCHHHHHH-----HHHHHHHHHHhcCCeEEE
Q 020596 82 ANESSSQE-----LSDWNNRYRLRFGFIFII 107 (324)
Q Consensus 82 ~~~~~~~~-----L~~LN~~Ye~kFGfpFVi 107 (324)
++++|+++ |..-.++|-.++|+|||+
T Consensus 74 ls~aelaRR~~~~Ls~~Q~~~L~rWGYPYV~ 104 (160)
T PF06299_consen 74 LSEAELARRRPAGLSPRQRANLERWGYPYVM 104 (160)
T ss_pred CChHHHhhcCcccCCHHHHHHHHHhCCCcee
Confidence 35555533 667778899999999996
No 78
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=29.32 E-value=43 Score=30.76 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.3
Q ss_pred HhcCCeEEEEec-CCCHHHHHHHHHHHhc
Q 020596 99 LRFGFIFIICAS-GRTAAEILAELKKRYT 126 (324)
Q Consensus 99 ~kFGfpFVi~v~-G~s~~eIL~~l~~RL~ 126 (324)
..||.||++.++ |-+-.++-+-|++|++
T Consensus 129 ~~hGiPF~f~v~~gE~f~~tK~Rl~~rlg 157 (213)
T PF14533_consen 129 RTHGIPFLFVVKPGETFSDTKERLQKRLG 157 (213)
T ss_dssp -EEEEEEEEEEETT--HHHHHHHHHHHH-
T ss_pred ccCCCCEEEEeeCCCcHHHHHHHHHHHhC
Confidence 789999999998 5566777777777774
No 79
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.11 E-value=2.8e+02 Score=28.04 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCeEEEEe-cCCC-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 020596 92 DWNNRYRLRFGFIFIICA-SGRT-AAEILAELKKRYTNRPIIEFEIAAQE 139 (324)
Q Consensus 92 ~LN~~Ye~kFGfpFVi~v-~G~s-~~eIL~~l~~RL~N~~e~E~~~Al~E 139 (324)
.+-+..++|||.||+... -|.. -++-|..+.+.+.++...+.+..+++
T Consensus 233 ~~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~ 282 (421)
T cd01976 233 YIARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAE 282 (421)
T ss_pred HHHHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 345667889999999874 1322 37788888888887644444444444
No 80
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=28.94 E-value=56 Score=25.03 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhHh
Q 020596 115 AEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 152 (324)
Q Consensus 115 ~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 152 (324)
=++|+....+|....+.|++.+++=+..|-+-||-.-+
T Consensus 12 LelLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~AL 49 (64)
T PF09058_consen 12 LELLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQAL 49 (64)
T ss_dssp HHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888999999999999999999999999986543
No 81
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.73 E-value=1.3e+02 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCeEEEEe---cCCC-HHHHHHHHHHHhcCCh
Q 020596 92 DWNNRYRLRFGFIFIICA---SGRT-AAEILAELKKRYTNRP 129 (324)
Q Consensus 92 ~LN~~Ye~kFGfpFVi~v---~G~s-~~eIL~~l~~RL~N~~ 129 (324)
.+-+..++|||.|||..- -|.. -++-|..+.+.++.+.
T Consensus 221 ~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 221 EFAQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIEK 262 (427)
T ss_pred HHHHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCCh
Confidence 345667899999999873 4665 4788899998888764
No 82
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=28.38 E-value=1e+02 Score=24.60 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 020596 82 ANESSSQELSDWNNRYRLRFGFIFIICAS 110 (324)
Q Consensus 82 ~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~ 110 (324)
+++++.++|.+..++++++.|..++|..-
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv 30 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTV 30 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 57899999999999999999988855543
No 83
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.69 E-value=1.2e+02 Score=29.28 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=44.3
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCC-C-CCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEe
Q 020596 202 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQ-P-RPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 279 (324)
Q Consensus 202 ~~~istHVLDt~~G~PA~gv~V~L~~~~~~~-~-~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 279 (324)
-.+++.-|||- |+|.+|-+|.....+... + ...++ ..-..-....||.+|++.-.. +..|.|.+.-.
T Consensus 171 ge~f~~~vl~~--GkPv~nA~V~v~~~n~~~~d~~a~~~----~~ek~~~~~~TD~kG~~~fip-----~r~G~W~~~~~ 239 (264)
T COG5266 171 GEVFRGKVLDN--GKPVPNATVEVEFDNIDTKDNRAKTG----NTEKTALVQFTDDKGEVSFIP-----LRAGVWGFAVE 239 (264)
T ss_pred CCeEEEEEEEC--CccCCCcEEEEEEecccccccccccC----CCCCcceEEEcCCCceEEEEE-----ccCceEEEEee
Confidence 45789999997 999999999987544110 0 00001 111223567899999997433 34688887654
Q ss_pred eCC
Q 020596 280 TGK 282 (324)
Q Consensus 280 t~~ 282 (324)
...
T Consensus 240 ~~~ 242 (264)
T COG5266 240 HKT 242 (264)
T ss_pred ccC
Confidence 433
No 84
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=27.69 E-value=1.1e+02 Score=33.92 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=47.3
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCcCCCCcCCCCCeeEEEEEeeCCCC
Q 020596 205 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 284 (324)
Q Consensus 205 istHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t~~Yf 284 (324)
|=+||.|..+=.|.++-.|++|. +.+.+++++|+.||-+--++ ....|.+-++-.+++=|
T Consensus 3 lKV~V~d~~t~qpl~~A~V~V~~----------------N~t~~~s~~t~~dG~~~l~~----~yrlg~~l~v~a~k~gy 62 (807)
T PF10577_consen 3 LKVQVSDASTRQPLSDASVEVFG----------------NQTLTASGTTGNDGVVLLKF----PYRLGTWLIVTASKDGY 62 (807)
T ss_pred EEEEEecccCcccCCCCeEEEEe----------------ceeEeecceecCCceEEEEE----eccCCCeEEEEEecCCc
Confidence 55899999999999999999984 46789999999999775333 45567777777666544
No 85
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.69 E-value=76 Score=31.71 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHhhCCCCCCCCcchHHhhHhhccCCHHHHHHHHHHHHHHH
Q 020596 56 LDAFSAHPQIGQSPWSKAEQSTALATANESSSQELSDWNNRYR 98 (324)
Q Consensus 56 l~ll~aHP~LG~s~~S~~EQa~al~~~~~~~~~~L~~LN~~Ye 98 (324)
.-+|+-||| -+.-++...+.|.++|.+|+
T Consensus 39 KLALk~HPD--------------kNpddp~A~e~F~~in~AYE 67 (336)
T KOG0713|consen 39 KLALKYHPD--------------KNPDDPNANEKFKEINAAYE 67 (336)
T ss_pred HHHHHhCCC--------------CCCCCHHHHHHHHHHHHHHH
Confidence 357899999 33567888899999999996
No 86
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.65 E-value=1.1e+02 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=19.2
Q ss_pred CCCCeeEEEEEeeCCCCC-CCCCceeEEEEEe
Q 020596 268 DLNPGFYKITFNTGKYCP-EGFFPYVSIVFEI 298 (324)
Q Consensus 268 ~~~~G~Y~l~F~t~~Yf~-~~F~p~V~V~F~i 298 (324)
.+.||.|+|.....+=.. ...-+ ..|.|.|
T Consensus 35 ~L~~G~Y~l~V~a~~~~~~~~~~~-~~l~i~I 65 (66)
T PF07495_consen 35 NLPPGKYTLEVRAKDNNGKWSSDE-KSLTITI 65 (66)
T ss_dssp S--SEEEEEEEEEEETTS-B-SS--EEEEEEE
T ss_pred eCCCEEEEEEEEEECCCCCcCccc-EEEEEEE
Confidence 678999999998766554 33333 7777776
No 87
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=27.07 E-value=2.3e+02 Score=27.81 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCeEEEEecCCCH---HHHHHHHHHHhc
Q 020596 93 WNNRYRLRFGFIFIICASGRTA---AEILAELKKRYT 126 (324)
Q Consensus 93 LN~~Ye~kFGfpFVi~v~G~s~---~eIL~~l~~RL~ 126 (324)
+-+..++|||.|||.+..-... ++-|+.+.+.++
T Consensus 207 ~a~~L~e~~giP~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 207 AAEWLEERFGIPYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp HHHHHHHHHT-EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeeeccccccHHHHHHHHHHHHHHhC
Confidence 4577899999999996654433 677888888888
No 88
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.98 E-value=1.3e+02 Score=26.44 Aligned_cols=37 Identities=22% Similarity=0.055 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 020596 113 TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLA 149 (324)
Q Consensus 113 s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~~RL~ 149 (324)
+|.|=|+.|+++|..-|+.|++.++++-...-..+.+
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~ 38 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGE 38 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 6889999999999999999999999998888777764
No 89
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.98 E-value=69 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=21.6
Q ss_pred cchHHhhHhhccCCHHHHHHHHHHHHHHHHh
Q 020596 70 WSKAEQSTALATANESSSQELSDWNNRYRLR 100 (324)
Q Consensus 70 ~S~~EQa~al~~~~~~~~~~L~~LN~~Ye~k 100 (324)
+|..|=..-+.+++++--++|.+|+++|..|
T Consensus 8 ls~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 8 LSYEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4555522223356888888999999999987
No 90
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=24.31 E-value=61 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.3
Q ss_pred CCeeEEEEEeeCC
Q 020596 270 NPGFYKITFNTGK 282 (324)
Q Consensus 270 ~~G~Y~l~F~t~~ 282 (324)
.||+|+|.|..-.
T Consensus 11 ~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 11 KPGTYTLTVQATA 23 (41)
T ss_pred CCeEEEEEEEEEE
Confidence 5899999997543
No 91
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.
Probab=23.98 E-value=56 Score=30.89 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCHHHHHH-----HHHHHHHHHHhcCCeEEE
Q 020596 82 ANESSSQE-----LSDWNNRYRLRFGFIFII 107 (324)
Q Consensus 82 ~~~~~~~~-----L~~LN~~Ye~kFGfpFVi 107 (324)
++++|+++ |..-.++|..|+|+|||+
T Consensus 134 ls~aelaRRr~~~Ls~~Q~~~L~~WGYPYV~ 164 (228)
T TIGR03223 134 LTEAELARRRPDQLTPRQRALLERWGYPYVL 164 (228)
T ss_pred CCHHHHhhcCccCCCHHHHHHHHHcCCCcee
Confidence 56777755 888889999999999996
No 92
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=23.91 E-value=39 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.6
Q ss_pred HHhcCCeEEEEecCCC-HHHHHHHHHHHhcCC
Q 020596 98 RLRFGFIFIICASGRT-AAEILAELKKRYTNR 128 (324)
Q Consensus 98 e~kFGfpFVi~v~G~s-~~eIL~~l~~RL~N~ 128 (324)
|-|||||.|=+++-+. -.+|+..|++|-.+-
T Consensus 221 EGKfsFP~iHA~~t~~q~~Qvl~ILrqRT~di 252 (322)
T KOG0777|consen 221 EGKFSFPIIHALKTKGQTEQVLRILRQRTSDI 252 (322)
T ss_pred cCccCCcchhhhhcCCchHHHHHHHHHhhccc
Confidence 5699999999997665 477999999997753
No 93
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=23.32 E-value=2.3e+02 Score=32.10 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=52.5
Q ss_pred HHHhhC-CHHHHHHHHhc----------C---CCCCHHHHHHHHHHHHhc--cCChhhHHHHHhhCC-----CCCC---C
Q 020596 13 LLGCCG-STKFAKEMASA----------S---PFASLNQAVSAARHIWFN--LVDVNGWLDAFSAHP-----QIGQ---S 68 (324)
Q Consensus 13 f~~~~~-spw~A~~~~~~----------R---PF~s~~~L~~a~~~~~~~--~~~~~~~l~ll~aHP-----~LG~---s 68 (324)
++..|+ |||+++.+..+ + ...+.+++.+.+...+.. ..+.+++++.||..= +||- +
T Consensus 555 L~~l~~~S~~la~~L~~~P~lld~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~d~e~~~~~LR~~k~~~~lri~~~dl~ 634 (943)
T PRK11072 555 LISLCAASPWIAEQLARYPLLLDELLDPRALYQPTDWDAYRDELRQYLLRVPEDDEEQQMEALRQFKQAQVLRIAAADIA 634 (943)
T ss_pred HHHHHHhCHHHHHHHHHCHHHHHHHhCcccccCCCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555 77777766431 1 114556665555555321 124566777766432 2222 2
Q ss_pred CcchHHhhHh-hccCCHHHH-HHHHHHHHHHHHhcCCe---------EEEEecCC
Q 020596 69 PWSKAEQSTA-LATANESSS-QELSDWNNRYRLRFGFI---------FIICASGR 112 (324)
Q Consensus 69 ~~S~~EQa~a-l~~~~~~~~-~~L~~LN~~Ye~kFGfp---------FVi~v~G~ 112 (324)
....-|+.+. +..+-+..+ ..|....+...+|+|.| |+|.+=||
T Consensus 635 g~~~~~~v~~~LS~lAd~~l~~~l~~a~~~l~~~~G~p~~~~~~~~~~aViamGK 689 (943)
T PRK11072 635 GVLPVMKVSDHLTYLAEAILDAVVQQAWQQMVKRHGEPPHLEGRERGFAVIGYGK 689 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCCCCCEEEEeecC
Confidence 2222344333 433334444 33555566677799988 88888765
No 94
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=46 Score=31.24 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=59.1
Q ss_pred HHHhhCCCCCC----CCcchHHhhHhhccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHH---HHHHHHHHHhcCCh
Q 020596 57 DAFSAHPQIGQ----SPWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAA---EILAELKKRYTNRP 129 (324)
Q Consensus 57 ~ll~aHP~LG~----s~~S~~EQa~al~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~---eIL~~l~~RL~N~~ 129 (324)
+=|.+.|-+++ -..+..-|.-.+..+++++...|.++....-++||. |.-++++= =-|.-+.++|.-+.
T Consensus 119 erLk~F~l~~~~~~mrvte~rp~~i~v~paddad~~~l~~~Rd~ls~~~g~----r~P~HDaY~FHITlgYl~~wltpee 194 (239)
T COG5255 119 ERLKIFPLLDEEFNMRVTEMRPQGILVEPADDADAKILEEWRDYLSEKFGY----RHPDHDAYQFHITLGYLRIWLTPEE 194 (239)
T ss_pred HHHhcccCCchhhcchhhcccccceEeccCCHHHHHHHHHHHHHHhhhhcc----cCCCCcceEEEEEeeeEeeecChhh
Confidence 33455565553 222334455445578999999999999988899885 44555542 23556677888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 020596 130 IIEFEIAAQEQMKITE 145 (324)
Q Consensus 130 e~E~~~Al~Ev~kIa~ 145 (324)
+.|.+.++.|...|-.
T Consensus 195 ~a~~q~~l~e~~e~la 210 (239)
T COG5255 195 EAEWQAVLDELLEILA 210 (239)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999887743
No 95
>PF13115 YtkA: YtkA-like
Probab=23.00 E-value=3.4e+02 Score=20.50 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=19.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEec
Q 020596 204 PITTHVLDVSQGSPAAGVEVRLEMWK 229 (324)
Q Consensus 204 ~istHVLDt~~G~PA~gv~V~L~~~~ 229 (324)
.|+.| ++..|+|..|-.|.+....
T Consensus 23 ~i~v~--~~~~g~pv~~a~V~~~~~m 46 (86)
T PF13115_consen 23 TITVT--VDQGGKPVTDADVQFEIWM 46 (86)
T ss_pred EEEEE--ECCCCCCCCCCEEEEEEEe
Confidence 47777 6699999999999887654
No 96
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=22.54 E-value=3e+02 Score=31.39 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=56.0
Q ss_pred HHHHhhC-CHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC-----CCCC---CC
Q 020596 12 ELLGCCG-STKFAKEMASA-------------SPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP-----QIGQ---SP 69 (324)
Q Consensus 12 ~f~~~~~-spw~A~~~~~~-------------RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP-----~LG~---s~ 69 (324)
.++..|+ |||+++.+..+ .|..+.++|.+.+.+.+....+.+++++.||..= +|+- +.
T Consensus 581 ~L~~ll~~S~~la~~L~~~P~lld~Lld~~~~~~~~~~~~l~~~l~~~l~~~~d~e~~~~~LR~~k~~~~lria~~dl~g 660 (986)
T PRK14108 581 LLVLIMGAAPRLADIIARRPHVFDGLLDPAFFSELPTRAYLSARLAAFLADAGSYEEVLDRLRIFAQEQRFLIGIRILTG 660 (986)
T ss_pred HHHHHHhcCHHHHHHHHHChHHHHHHcCcccccCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666 77777766541 2335677777776666433345567777766542 2221 11
Q ss_pred cchHHhhHh-hccCCHHHH-HHHHHHHHHHHHhcCC----eEEEEecCCC
Q 020596 70 WSKAEQSTA-LATANESSS-QELSDWNNRYRLRFGF----IFIICASGRT 113 (324)
Q Consensus 70 ~S~~EQa~a-l~~~~~~~~-~~L~~LN~~Ye~kFGf----pFVi~v~G~s 113 (324)
...-++.+. +..+.+..+ ..|...-+...++||. .|+|.+=||-
T Consensus 661 ~~~~~~v~~~Ls~LAda~l~~al~~a~~~~~~~~G~~~~~~~aViamGKl 710 (986)
T PRK14108 661 TISGQRAGRAFADLAELIIGAALDAVEEEFARAHGRIKGGRVAILAMGKL 710 (986)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEeeCCc
Confidence 112233332 433334444 3344455666788885 4888888763
No 97
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=22.18 E-value=4.3e+02 Score=23.36 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=49.0
Q ss_pred cchHHhhHhhccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecC---CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 020596 70 WSKAEQSTALATANESSSQELSDWNNRYRLRF-GFIFIICASG---RTAAEILAELKKRYTNRPIIEFEIAAQEQMKITE 145 (324)
Q Consensus 70 ~S~~EQa~al~~~~~~~~~~L~~LN~~Ye~kF-GfpFVi~v~G---~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa~ 145 (324)
.|..+=+..++ -..+..+.|.+|++.|.++. |+-.+-...| .++.+.-+.+++-+.......+..|.-|+.-|-.
T Consensus 14 vs~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalEtLAiIA 92 (159)
T PF04079_consen 14 VSIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALETLAIIA 92 (159)
T ss_dssp B-HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHHHHHHHH
Confidence 34455445553 23445577999999998777 5544433333 3678888888888888788888888877765543
No 98
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.20 E-value=2.8e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeEEEEec--CCC-HHHHHHHHHHHhcCChHHH
Q 020596 92 DWNNRYRLRFGFIFIICAS--GRT-AAEILAELKKRYTNRPIIE 132 (324)
Q Consensus 92 ~LN~~Ye~kFGfpFVi~v~--G~s-~~eIL~~l~~RL~N~~e~E 132 (324)
.+-+..++|||.||+.+.. |.. -++.|..+.+.++.+.+.+
T Consensus 247 ~~a~~Lee~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~ 290 (455)
T PRK14476 247 KAAEALEARTGVPYLVFPSLTGLEAVDRFIATLAQISGRPVPAK 290 (455)
T ss_pred HHHHHHHHHhCCCeEecCCCcChHHHHHHHHHHHHHHCCCCcHH
Confidence 5567789999999998753 444 3888999999998765433
No 99
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=21.17 E-value=1.1e+02 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=19.4
Q ss_pred CHHHHHHHHhcC---CCCCHHHHHHHHH
Q 020596 19 STKFAKEMASAS---PFASLNQAVSAAR 43 (324)
Q Consensus 19 spw~A~~~~~~R---PF~s~~~L~~a~~ 43 (324)
....|+.+...| ||.|++++...+.
T Consensus 36 g~~~a~~I~~~R~~g~f~s~~df~~R~~ 63 (90)
T PF14579_consen 36 GEEVAEKIVEERENGPFKSLEDFIQRLP 63 (90)
T ss_dssp -HHHHHHHHHHHHCSS-SSHHHHHHHS-
T ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHh
Confidence 577888888888 9999999998874
No 100
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=21.08 E-value=1.9e+02 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 020596 84 ESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYT 126 (324)
Q Consensus 84 ~~~~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~eIL~~l~~RL~ 126 (324)
++..+.|.+|. +-|++||+| .||+..++... .+.|+
T Consensus 18 ~~~~~ai~~l~-----~~G~~~vi~-TgR~~~~~~~~-~~~lg 53 (225)
T TIGR02461 18 GPAREALEELK-----DLGFPIVFV-SSKTRAEQEYY-REELG 53 (225)
T ss_pred hHHHHHHHHHH-----HCCCEEEEE-eCCCHHHHHHH-HHHcC
Confidence 33455554443 349999998 89998887764 44554
No 101
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.72 E-value=2.5e+02 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCeEEEEec--CCC-HHHHHHHHHHHhcCCh
Q 020596 92 DWNNRYRLRFGFIFIICAS--GRT-AAEILAELKKRYTNRP 129 (324)
Q Consensus 92 ~LN~~Ye~kFGfpFVi~v~--G~s-~~eIL~~l~~RL~N~~ 129 (324)
.+-+..++|||.||+.... |.. -++-|..+.+.++.+.
T Consensus 247 ~~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~ 287 (432)
T TIGR01285 247 RAASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAV 287 (432)
T ss_pred HHHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCCc
Confidence 4567789999999998743 444 3778889999988754
No 102
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=20.63 E-value=2.7e+02 Score=22.18 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred ecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020596 109 ASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 144 (324)
Q Consensus 109 v~G~s~~eIL~~l~~RL~N~~e~E~~~Al~Ev~kIa 144 (324)
.+|.+..+|...|++|++.+...=...|..|+.++.
T Consensus 10 ~~G~~~~~iak~i~~~~~~~~~~A~~iarTe~~~a~ 45 (108)
T TIGR01641 10 QRGLGPNELAKRLRKELGVQKHYAQRLARTETARIY 45 (108)
T ss_pred HcCCCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 468899999999999998775544555555555543
No 103
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=20.59 E-value=1.4e+02 Score=28.45 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCCCCCC-CCcc-hHH--hhHhh-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 020596 35 LNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ-SPWS-KAE--QSTAL-ATANESSSQELSDWNNRYRLRFGFIFIICA 109 (324)
Q Consensus 35 ~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~-s~~S-~~E--Qa~al-~~~~~~~~~~L~~LN~~Ye~kFGfpFVi~v 109 (324)
+...|+.+.++++...+.+...+.|...+-+-- |..+ +.| |.--+ -.++++..++|.+..... -=.-||.+
T Consensus 35 F~~~HA~ArDAV~~~ld~~~l~~~l~~~~~~~v~S~a~dR~~YL~RPDlGR~L~~~s~~~L~~~~~~~----~Dv~iVia 110 (237)
T PF05985_consen 35 FRLDHARARDAVHAELDVEALAAQLQALPLLRVQSQASDRAEYLRRPDLGRRLSEESRARLKELCEKG----PDVQIVIA 110 (237)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHTT-EEEEBS--SHHHHTT-HHHHTSB-HHHHHHHHHHS-SS-----SEEEEEE
T ss_pred HHHHHHHHhhhhccCCChhhhHHhhccCCcEEEEeCCCCHHHHhhCCCCCCcCCHHHHHHHHHhcCCC----CCEEEEEc
Confidence 345677788887777776555566666332221 2222 222 22222 147888888886544322 33456667
Q ss_pred cCCCHHHH-------HHHHHHHhcC
Q 020596 110 SGRTAAEI-------LAELKKRYTN 127 (324)
Q Consensus 110 ~G~s~~eI-------L~~l~~RL~N 127 (324)
.|.|...| |..|...|.+
T Consensus 111 DGLSa~Av~~n~~~~l~~L~~~L~~ 135 (237)
T PF05985_consen 111 DGLSARAVEANAAPLLPALLPGLKS 135 (237)
T ss_dssp -TT-HHHHHTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 89987554 4444444444
No 104
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=20.32 E-value=3.4e+02 Score=27.86 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCeEEEEec--CCCH-HHHHHHHHHHhcCChH
Q 020596 91 SDWNNRYRLRFGFIFIICAS--GRTA-AEILAELKKRYTNRPI 130 (324)
Q Consensus 91 ~~LN~~Ye~kFGfpFVi~v~--G~s~-~eIL~~l~~RL~N~~e 130 (324)
..+-+..++|||.||+.... |... ++-|..+.+.++.+..
T Consensus 246 ~~~A~~Lee~~giP~~~~~~piGi~~T~~fl~~l~~~~g~~~~ 288 (461)
T TIGR02931 246 MKAADYLQKKFDVPAIIGPTPIGIRNTDTFLQNLKKMTGKPIP 288 (461)
T ss_pred HHHHHHHHHHhCCCeeccCCCcchHHHHHHHHHHHHHHCCCCC
Confidence 34567788999999997644 4443 6779999888886543
No 105
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.32 E-value=2.5e+02 Score=28.43 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCeEEEEe--cCCC-HHHHHHHHHHHhcCChHHH
Q 020596 91 SDWNNRYRLRFGFIFIICA--SGRT-AAEILAELKKRYTNRPIIE 132 (324)
Q Consensus 91 ~~LN~~Ye~kFGfpFVi~v--~G~s-~~eIL~~l~~RL~N~~e~E 132 (324)
..+-+..++|||.||+... -|.. -++-|..+.+.++.+...+
T Consensus 235 ~~~a~~Lee~~GiP~~~~~~p~G~~~T~~~L~~la~~~g~~~~~~ 279 (417)
T cd01966 235 RKAAEALEERTGVPYYVFPSLTGLEAVDALIATLAKLSGRPVPEK 279 (417)
T ss_pred HHHHHHHHHHHCCCeeecCCCcchHHHHHHHHHHHHHHCCCcCHH
Confidence 3566788999999999875 3554 4888999999988776433
No 106
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=20.01 E-value=53 Score=28.47 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=8.3
Q ss_pred HHHHHhcCCe
Q 020596 95 NRYRLRFGFI 104 (324)
Q Consensus 95 ~~Ye~kFGfp 104 (324)
++|++|||+|
T Consensus 98 ~eYR~kwGlp 107 (132)
T PF05443_consen 98 EEYRAKWGLP 107 (132)
T ss_dssp HHHHHHTT-G
T ss_pred HHHHHHhCcC
Confidence 6899999998
Done!