BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020597
(324 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225456573|ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera]
Length = 333
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/339 (59%), Positives = 239/339 (70%), Gaps = 24/339 (7%)
Query: 1 MQRLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH------- 49
MQRL+SLK + S + F+KP HPN LS S H H
Sbjct: 1 MQRLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPP 53
Query: 50 PTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA- 108
P F W S LS + F+ NP L ++F + L K+ +V F RAQFP RSF
Sbjct: 54 PHFPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGF 113
Query: 109 -----SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
S+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SG
Sbjct: 114 SPSFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSG 173
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R+HTLITSAFSHID+ H++SNMIGLYFFGM+IGR GPE+LLKLY+AGA+ GSVFYLV+H
Sbjct: 174 RIHTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHH 233
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
AF+A SSK Q MW ++PS P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+
Sbjct: 234 AFMAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGI 293
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
FLIGKDMLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 294 FLIGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 332
>gi|297734076|emb|CBI15323.3| unnamed protein product [Vitis vinifera]
Length = 362
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 237/337 (70%), Gaps = 24/337 (7%)
Query: 3 RLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH-------PT 51
RL+SLK + S + F+KP HPN LS S H H P
Sbjct: 32 RLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPPPH 84
Query: 52 FSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA--- 108
F W S LS + F+ NP L ++F + L K+ +V F RAQFP RSF
Sbjct: 85 FPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSP 144
Query: 109 ---SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
S+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SGR+
Sbjct: 145 SFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRI 204
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTLITSAFSHID+ H++SNMIGLYFFGM+IGR GPE+LLKLY+AGA+ GSVFYLV+HAF
Sbjct: 205 HTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAF 264
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+A SSK Q MW ++PS P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+FL
Sbjct: 265 MAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFL 324
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
IGKDMLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 325 IGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 361
>gi|224092178|ref|XP_002309495.1| predicted protein [Populus trichocarpa]
gi|222855471|gb|EEE93018.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 190/236 (80%), Gaps = 6/236 (2%)
Query: 92 DGKVLFFRAQFPER------SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD 145
D KV FF A+F S S R WRSW + + VV GLIIAN AVFMLWRI D
Sbjct: 4 DCKVGFFIARFARGYSWSNLSLGSNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIED 63
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
KFM NF ISLDNF SGR+HTL+TSAFSHID+ HI NMIGLYFFG +I RT GPE+LL
Sbjct: 64 QKFMMENFMISLDNFRSGRIHTLVTSAFSHIDIGHIAFNMIGLYFFGTNIARTFGPEFLL 123
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
KLY+AGAIGGSVFYL++H ++ +SSK QGMW D SRTP LGASGAVNAIMLLDIFLNP+
Sbjct: 124 KLYLAGAIGGSVFYLLHHGYMDLSSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPR 183
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
ATLYFDF IPVPA LLG+FLIGKD+LR++EGNSNISGSAHLGGAAVAA+AWARI+R
Sbjct: 184 ATLYFDFIIPVPAILLGIFLIGKDLLRVMEGNSNISGSAHLGGAAVAAIAWARIKR 239
>gi|18394631|ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]
gi|9795596|gb|AAF98414.1|AC026238_6 Hypothetical protein [Arabidopsis thaliana]
gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein [Arabidopsis thaliana]
gi|20148713|gb|AAM10247.1| unknown protein [Arabidopsis thaliana]
gi|21592397|gb|AAM64348.1| unknown [Arabidopsis thaliana]
gi|332191612|gb|AEE29733.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]
Length = 336
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 173/283 (61%), Positives = 213/283 (75%), Gaps = 24/283 (8%)
Query: 48 FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
F P+ WRS++ R FF S L ++ K + + +V F +QFP++
Sbjct: 64 FDPSQLWRSEK---------------IRGFFASALGNKAVKLGNLVESRVGFIGSQFPKK 108
Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
F + F+ R W+ WL+ +VV GL+IAN VF++WR+ + +FM NNF ISLDN
Sbjct: 109 GFEFQRFSGFQRRGWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDN 168
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FKSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228
Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
L++HA++A +S K QG +V DPSRTP LGASGAVNAIMLLDIFL+P+ATLY +FFIPVPA
Sbjct: 229 LIHHAYMAATSPKGQGAFVRDPSRTPGLGASGAVNAIMLLDIFLHPRATLYLEFFIPVPA 288
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
LLG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331
>gi|297844814|ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297336130|gb|EFH66547.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 336
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 210/283 (74%), Gaps = 24/283 (8%)
Query: 48 FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
F P+ WRS+ R FF + L ++ K + + +V F +QFP++
Sbjct: 64 FDPSQLWRSET---------------IRGFFATALGNKAVKLGNLVESRVGFIGSQFPKK 108
Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
F + F+ R W+ WL+ +VV GL+IANT VFM+WR+ + +FM NF ISLDN
Sbjct: 109 GFEFERFSGFQRRGWKHWLQGLSDRDVVLGLVIANTGVFMMWRVFNQQFMMKNFMISLDN 168
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FTSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228
Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
L++HA++A +S K QG ++ DPSRTP LGASGAVNAIMLLDIFL+P ATLY +F IPVPA
Sbjct: 229 LIHHAYMATTSPKGQGAFMRDPSRTPGLGASGAVNAIMLLDIFLHPTATLYLEFIIPVPA 288
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
LLG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331
>gi|356513475|ref|XP_003525439.1| PREDICTED: uncharacterized protein C13E7.11-like [Glycine max]
Length = 336
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/263 (61%), Positives = 190/263 (72%), Gaps = 7/263 (2%)
Query: 49 HPTFSWRSQQSLSLKTHAFLFNPLLARRF-FTSLLSSQLRKSFFDGKV---LFFRAQFPE 104
HP + S +S S K AFL P+++R F F LL R + F R F
Sbjct: 58 HPLHHFHSCRSFSTKFRAFLSQPMISRHFAFNPLLRVSARSLQIGCRPSLHYFIRHNFNF 117
Query: 105 RSFASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
F R WRSWLR ++++V GLIIAN A+F+LWRIAD FM NFTISLDNF SG
Sbjct: 118 SHNHDFSRRSWRSWLRGLTANDMVLGLIIANVAIFLLWRIADQNFMIKNFTISLDNFKSG 177
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RLHTLIT+AFSH+D HIVSNMIGLYFFGM+IGR GPE+LLKLY+AGA+GGSVFYL++
Sbjct: 178 RLHTLITNAFSHVDTWHIVSNMIGLYFFGMNIGRNFGPEFLLKLYLAGAVGGSVFYLIHQ 237
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
A+ A +SK +V S+ ALGASGAVNA+MLLDIFL PKATLY DFFIPVPA LLG+
Sbjct: 238 AYKAQTSKDWRTMIV--SKELALGASGAVNAVMLLDIFLFPKATLYLDFFIPVPAVLLGI 295
Query: 284 FLIGKDMLRIIEGNSNISGSAHL 306
FLIGKDMLRI+EGNS ISGSAHL
Sbjct: 296 FLIGKDMLRILEGNSQISGSAHL 318
>gi|449439341|ref|XP_004137444.1| PREDICTED: uncharacterized protein C13E7.11-like [Cucumis sativus]
Length = 336
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 181/336 (53%), Positives = 219/336 (65%), Gaps = 12/336 (3%)
Query: 1 MQRLLSLKQLASKSNFLKNPTNFTFSKPFT--CHPNVQKRPLSSFSKHPFHPTFSWRSQQ 58
M +L S K ++ SN N + F+ + Q SF P S
Sbjct: 1 MNKLFSRKLVSRLSNSYANSLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSWSSH 60
Query: 59 S-LSLKTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFR 111
+ K H F P++ +RF + ++ + KS + + LF F + F F
Sbjct: 61 RSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120
Query: 112 YRW---RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
++W RSW ++ +EVV GLIIAN AVF+LWRIADP FM+ NFTISL+N SGR+HTL
Sbjct: 121 HQWGGRRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMSKNFTISLENVRSGRIHTL 180
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
ITSAFSHID HIVSNM+GLYFFGM+IG G E+LLKLY+AGAIGGS FYL +H F A+
Sbjct: 181 ITSAFSHIDTGHIVSNMVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQAL 240
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
SSK + W DP R LGASGAVNAIMLLDIFL PKATLY FFIPVPA LLG+FLIGK
Sbjct: 241 SSKSRSFWGEDPVRAKGLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGK 300
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
DMLR++E +S ISGSAHLGGAAVAALAWAR+RR F
Sbjct: 301 DMLRMLENDSQISGSAHLGGAAVAALAWARVRRGRF 336
>gi|147790859|emb|CAN61730.1| hypothetical protein VITISV_019858 [Vitis vinifera]
Length = 293
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 202/333 (60%), Gaps = 52/333 (15%)
Query: 1 MQRLLSLKQLASKSN-FLKNPTNFTFSKPFTCHPNV-QKRP---LSSFSKHPFHPTFSWR 55
MQRL+SLK + S P++ S P+ ++ Q P L + S P P F W
Sbjct: 1 MQRLISLKVASDISRRVFTKPSSLLHSHPYKTFFSLSQPSPTHHLHTTSLIP-PPHFPWP 59
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA------S 109
S LS + F+ NP L ++F + L K+ +V F RAQFP RSF S
Sbjct: 60 SHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDS 119
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTI
Sbjct: 120 YGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTI-------------- 165
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
GR GPE+LLKLY+AGA+ GSVFYLV+HAF+A S
Sbjct: 166 --------------------------GRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPS 199
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
SK Q MW ++PS P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+FLIGKD
Sbjct: 200 SKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKD 259
Query: 290 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
MLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 260 MLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 292
>gi|255547155|ref|XP_002514635.1| conserved hypothetical protein [Ricinus communis]
gi|223546239|gb|EEF47741.1| conserved hypothetical protein [Ricinus communis]
Length = 195
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/186 (72%), Positives = 158/186 (84%), Gaps = 5/186 (2%)
Query: 143 IADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
+ DP T ISLDNF SGR+HTLITSAFSHI++EHI+SNMIGLYFFG I R+
Sbjct: 11 VVDPSLYEQGGTLFGLISLDNFKSGRVHTLITSAFSHINLEHIISNMIGLYFFGTKIARS 70
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
G EYLLKLY+AGAIGGS+FYLV+HAF+A+S+K MW+ DPSRTP LGASGAVNA+MLL
Sbjct: 71 FGHEYLLKLYVAGAIGGSLFYLVHHAFMALSTKEHRMWM-DPSRTPGLGASGAVNAVMLL 129
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 318
DIFL+P+ATLY ++ IPVPA LLG+FLIGKD+LRIIEGNSNISGSAHLGGAAVAA+A+AR
Sbjct: 130 DIFLDPRATLYLNYIIPVPAILLGIFLIGKDVLRIIEGNSNISGSAHLGGAAVAAIAFAR 189
Query: 319 IRRRGF 324
I++ F
Sbjct: 190 IKKGRF 195
>gi|294462624|gb|ADE76858.1| unknown [Picea sitchensis]
Length = 314
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/255 (54%), Positives = 170/255 (66%), Gaps = 16/255 (6%)
Query: 75 RRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-------VV 127
RR T L S K DG F R RS+ Y S R+Y VV
Sbjct: 65 RRLITVRLGSL--KDMRDGGDAFIRNLV--RSY----YNRLSGFRRYSRGSLFSSHDGVV 116
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
+ LI N AVF LWR AD +FM NNF IS+DNFLSGR+HTL+T AFSHI +H++SNMIG
Sbjct: 117 WSLIGVNIAVFFLWRHADRRFMENNFKISVDNFLSGRVHTLLTCAFSHIMSDHLLSNMIG 176
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-AL 246
LYFFG ++G LG EYLLKLY+AGA+GGS+ +L+ AF+ + +P TP AL
Sbjct: 177 LYFFGSAVGSFLGAEYLLKLYLAGALGGSIMFLINQAFIVPWLEGSSRKYYNPRYTPGAL 236
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHL 306
GASGAVNAI+LLDIFL PKA Y +FFIPVPA LLG +IG+D+ + +G++ ISG+AHL
Sbjct: 237 GASGAVNAIILLDIFLFPKAIHYLNFFIPVPAMLLGAIIIGRDLWMVKQGDTQISGAAHL 296
Query: 307 GGAAVAALAWARIRR 321
GGA VAALAWA+I+R
Sbjct: 297 GGALVAALAWAKIKR 311
>gi|226510359|ref|NP_001144703.1| uncharacterized protein LOC100277739 [Zea mays]
gi|195646010|gb|ACG42473.1| hypothetical protein [Zea mays]
Length = 328
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 146/208 (70%), Gaps = 5/208 (2%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W SW+ + V+ LI AN AVF+LWR+ADP FM +F ISLDNF SGRLHTL+TSAF
Sbjct: 123 WASWMES--ADGAVWMLIGANVAVFLLWRVADPGFMRKHFMISLDNFKSGRLHTLLTSAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NM GL+FFG SI GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAEFNHLFANMFGLFFFGSSITNVFGPAFLLKLYVGGALTGSVFFLLEKAFLAYRKQDY 240
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
W D SR LGAS AVNA MLL IFL PK +Y F IPVPA L+G LIG D++R
Sbjct: 241 VGW--DTSRAAELGASAAVNATMLLQIFLYPKGLVYIYFVIPVPAALMGAGLIGADLVR- 297
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRR 321
++G+ ++SGSA LGGA VAAL WARIR+
Sbjct: 298 LKGHGDVSGSAPLGGALVAALVWARIRK 325
>gi|242054489|ref|XP_002456390.1| hypothetical protein SORBIDRAFT_03g035340 [Sorghum bicolor]
gi|241928365|gb|EES01510.1| hypothetical protein SORBIDRAFT_03g035340 [Sorghum bicolor]
Length = 328
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 145/208 (69%), Gaps = 5/208 (2%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W W+ S+ V+ LI AN AVFMLWR+ADP FM +F ISLDN SGRLHTL+T+AF
Sbjct: 123 WAYWMESPDSA--VWMLIGANVAVFMLWRVADPGFMRRHFMISLDNLKSGRLHTLLTNAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NMIGLYFFG +I GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAESNHLFANMIGLYFFGNNIANVFGPAFLLKLYVGGALTGSVFFLLEKAFLAHRKQDY 240
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
W D SR LGAS AVNA +LL IFL PK +Y F IPVPA L+G +IG D+LR
Sbjct: 241 EGW--DTSRVAGLGASAAVNATILLQIFLYPKGLVYLYFLIPVPAALMGAAIIGADLLR- 297
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRR 321
++ + +SGSAHLGGA VAAL WARIR+
Sbjct: 298 LKRHGEVSGSAHLGGALVAALMWARIRK 325
>gi|297839291|ref|XP_002887527.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp.
lyrata]
gi|297333368|gb|EFH63786.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp.
lyrata]
Length = 323
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 173/260 (66%), Gaps = 19/260 (7%)
Query: 77 FFTSLLSSQLRKSF---FDGKVLFFRAQFPE------RSFASFRYR-WRSWLRQYGSSEV 126
F T+L ++ L+ F + +V FF +Q P + F F+ R W+SW+ G++ V
Sbjct: 65 FATTLGNTNLKLKFRNVLESRVGFFSSQLPSNGLIESKGFTGFQKRGWKSWIN--GANGV 122
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V+GLIIAN AVF +WR+++ +M +F ++ +F SGR+HTLITS FS++ I+ NMI
Sbjct: 123 VFGLIIANVAVFTMWRVSNRWWMLKHFVLTTKSFTSGRIHTLITSGFSNVGTNQIILNMI 182
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-- 244
GLY+FG I RTLGP YLLKLY AGA+G SVF+L HA LA + K QG+ +D S+ P
Sbjct: 183 GLYYFGTRIARTLGPLYLLKLYFAGALGSSVFFLSNHALLA-TLKGQGVVTIDKSKLPYS 241
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG-NSNISGS 303
LGA G+V AI LLD+FL PK T YF + VP + G+ +G +ML+I+EG N+NIS S
Sbjct: 242 QLGADGSVFAIALLDMFLYPKVTTYFVLMLRVPV-MGGILFLGLEMLKILEGKNNNISRS 300
Query: 304 AH--LGGAAVAALAWARIRR 321
+ +GG VAA+AWARIR+
Sbjct: 301 SVRLMGGVVVAAMAWARIRK 320
>gi|357136569|ref|XP_003569876.1| PREDICTED: rhomboid protein 1, mitochondrial-like [Brachypodium
distachyon]
Length = 325
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 141/208 (67%), Gaps = 4/208 (1%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W WL + ++ +I N AVF++W++ADP FM ++FT+SLDN SGRLHTL+TSAF
Sbjct: 119 WAHWLPS--ADGMLLTIISTNVAVFLIWQLADPSFMMDHFTVSLDNLKSGRLHTLLTSAF 176
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH H++ NMIGLYFFG SI GP +LLKLYMAGA+ GS F+L+ + S +Q
Sbjct: 177 SHRGNGHLLGNMIGLYFFGSSISSMFGPAFLLKLYMAGALVGSTFFLLEKTY--TSPPKQ 234
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
D SR ALGAS AVNAI+LL IFLNPK +Y F IPVPA L+G +IG D+LR+
Sbjct: 235 AYLEWDSSRNSALGASAAVNAIVLLKIFLNPKGLVYLYFLIPVPAALVGAAIIGFDLLRV 294
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRR 321
+ SGS+ LGG VAAL WARIR+
Sbjct: 295 SKEQGQASGSSPLGGTLVAALVWARIRK 322
>gi|326509755|dbj|BAJ87093.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 136/211 (64%), Gaps = 4/211 (1%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLIT 170
R W WL + +V L+ AN AV+MLW + DP FM +FT+SLDN SGRLHTL+T
Sbjct: 116 RVPWGRWLPS--ADGMVLMLMGANVAVYMLWHMVDPIFMKEHFTVSLDNVKSGRLHTLLT 173
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
SAFS H+ SNM+ LYFFG SI LGP +LLKLY+AGA+ GS FYLV AF+A
Sbjct: 174 SAFSQFVPGHLFSNMMCLYFFGSSISSMLGPAFLLKLYIAGALVGSTFYLVEKAFIAPRR 233
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
+ W D R+ +LGAS AVNAI+LL IFL PK +Y IPVPA +G IG D+
Sbjct: 234 QLYAGW--DMQRSNSLGASAAVNAIVLLHIFLKPKGRIYLYLLIPVPAAFVGAAWIGLDL 291
Query: 291 LRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
R EG S ++HLGG VAAL WARIR+
Sbjct: 292 WRAKEGQGQTSAASHLGGTLVAALVWARIRK 322
>gi|413952349|gb|AFW84998.1| hypothetical protein ZEAMMB73_057083 [Zea mays]
Length = 328
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/208 (56%), Positives = 144/208 (69%), Gaps = 5/208 (2%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W SW+ + V+ LI AN AVF+LWR+ADP FM +F ISLDNF SGRLHTL+TSAF
Sbjct: 123 WASWMES--ADGAVWMLIGANVAVFLLWRVADPGFMRKHFMISLDNFKSGRLHTLLTSAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NM GL+FFG SI GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAEFNHLFANMFGLFFFGSSITNVFGPAFLLKLYVGGALTGSVFFLLEKAFLAYRKQDY 240
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
W D SR LGAS AVNA MLL IFL PK +Y F IPVPA L+G LIG D++R
Sbjct: 241 VGW--DTSRAAELGASAAVNATMLLQIFLYPKGLVYIYFVIPVPAALMGAGLIGADLVR- 297
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRR 321
++ + ++SGSA LGGA AAL WARIR+
Sbjct: 298 LKRHGDVSGSAPLGGALAAALVWARIRK 325
>gi|42563215|ref|NP_177553.3| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|28392927|gb|AAO41899.1| unknown protein [Arabidopsis thaliana]
gi|332197433|gb|AEE35554.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 322
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 156/245 (63%), Gaps = 15/245 (6%)
Query: 92 DGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRI-- 143
+ + FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+
Sbjct: 79 ESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLG 136
Query: 144 ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
D +M NF +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG I R+ GP Y
Sbjct: 137 KDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGARIARSFGPRY 196
Query: 204 LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP--ALGASGAVNAIMLLDIF 261
LLKLY AGA+GGSVF+L HA +S K Q + D + P LGA+G V AI LLD+
Sbjct: 197 LLKLYFAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVPIGKLGANGPVYAITLLDML 256
Query: 262 LNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG--NSNISGSAHLGGAAVAALAWARI 319
L PK T YF + VP F G++ +G ++++++EG N+ ++ LGG VA +AWARI
Sbjct: 257 LYPKVTTYFGLMLRVPVF-AGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARI 315
Query: 320 RRRGF 324
R+ F
Sbjct: 316 RKGRF 320
>gi|218189102|gb|EEC71529.1| hypothetical protein OsI_03840 [Oryza sativa Indica Group]
Length = 327
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/195 (56%), Positives = 132/195 (67%), Gaps = 4/195 (2%)
Query: 102 FPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL 161
FP S W WL + V L+ AN VFMLW +ADP FM +F ISLDNF
Sbjct: 106 FPSSSMFLSGVSWAKWLPS--ADGAVLMLVGANVGVFMLWHLADPSFMRRHFMISLDNFK 163
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SGRLHTL+T+AFSH + H++SNMIGLYFFG SI GP +LLKLY+AGA+ GS F+L+
Sbjct: 164 SGRLHTLLTNAFSHAESGHLISNMIGLYFFGSSISNMFGPAFLLKLYVAGALAGSAFFLL 223
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
AFLA + G W D SRTPALGAS A NAI+LLDIFL PK +Y FFIP+PA ++
Sbjct: 224 EKAFLAPRRQFYGGW--DNSRTPALGASAAANAIILLDIFLYPKKLVYLYFFIPIPAAIM 281
Query: 282 GVFLIGKDMLRIIEG 296
G LIG D+LR+ EG
Sbjct: 282 GAILIGADLLRVKEG 296
>gi|186495287|ref|NP_001117599.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197438|gb|AEE35559.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 320
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 165/284 (58%), Gaps = 33/284 (11%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V +
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHV-MFR 276
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 324
+ +G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 277 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 320
>gi|52354227|gb|AAU44434.1| hypothetical protein AT1G74140 [Arabidopsis thaliana]
Length = 317
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 164/284 (57%), Gaps = 36/284 (12%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHR---- 273
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 324
+ +G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 274 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 317
>gi|79379813|ref|NP_177554.2| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197434|gb|AEE35555.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 317
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 164/284 (57%), Gaps = 36/284 (12%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHR---- 273
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 324
+ +G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 274 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 317
>gi|115440105|ref|NP_001044332.1| Os01g0763100 [Oryza sativa Japonica Group]
gi|57900364|dbj|BAD87354.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|113533863|dbj|BAF06246.1| Os01g0763100 [Oryza sativa Japonica Group]
Length = 308
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/192 (56%), Positives = 132/192 (68%), Gaps = 4/192 (2%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
S + R WL + V L+ AN VFMLW +ADP FM +F ISLDNF SGRLHTL
Sbjct: 97 SLQRRRTKWLPS--ADGAVLMLVGANVGVFMLWHLADPSFMRRHFMISLDNFKSGRLHTL 154
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+AFSH + H++SNMIGLYFFG SI GP +LLKLY+AGA+ GS F+L+ AFLA
Sbjct: 155 LTNAFSHAESGHLISNMIGLYFFGSSISNMFGPAFLLKLYVAGALAGSAFFLLEKAFLAP 214
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
+ G W D SRTPALGAS A NAI+LLDIFL PK +Y FFIP+PA ++G LIG
Sbjct: 215 RRQFYGGW--DNSRTPALGASAAANAIILLDIFLYPKKLVYLYFFIPIPAAIMGAILIGA 272
Query: 289 DMLRIIEGNSNI 300
D+LR+ E NI
Sbjct: 273 DLLRVKETILNI 284
>gi|449486921|ref|XP_004157442.1| PREDICTED: uncharacterized protein LOC101226733 [Cucumis sativus]
Length = 140
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+GLYFFGM+IG G E+LLKLY+AGAIGGS FYL +H F A+SSK + W DP R
Sbjct: 1 MVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQALSSKSRSFWGEDPVRAK 60
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
LGASGAVNAIMLLDIFL PKATLY FFIPVPA LLG+FLIGKDMLR++E +S ISGSA
Sbjct: 61 GLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGKDMLRMLENDSQISGSA 120
Query: 305 HLGGAAVAALAWARIRR 321
HLGGAAVAALAWAR+RR
Sbjct: 121 HLGGAAVAALAWARVRR 137
>gi|145327237|ref|NP_001077820.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197437|gb|AEE35558.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 306
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 156/282 (55%), Gaps = 43/282 (15%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V G
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFGG 277
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
N S S LGG VAA+AWARI++ F
Sbjct: 278 P-------------NHIASSSGQLGGVVVAAMAWARIKKGRF 306
>gi|91806083|gb|ABE65770.1| hypothetical protein At1g74140 [Arabidopsis thaliana]
Length = 306
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 156/282 (55%), Gaps = 43/282 (15%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V G
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFGG 277
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
N S S LGG VAA+AWARI++ F
Sbjct: 278 P-------------NHIASSSGQLGGVVVAAMAWARIKKGRF 306
>gi|42572101|ref|NP_974141.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332197432|gb|AEE35553.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 296
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 137/214 (64%), Gaps = 13/214 (6%)
Query: 92 DGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRI-- 143
+ + FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+
Sbjct: 79 ESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLG 136
Query: 144 ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
D +M NF +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG I R+ GP Y
Sbjct: 137 KDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGARIARSFGPRY 196
Query: 204 LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP--ALGASGAVNAIMLLDIF 261
LLKLY AGA+GGSVF+L HA +S K Q + D + P LGA+G V AI LLD+
Sbjct: 197 LLKLYFAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVPIGKLGANGPVYAITLLDML 256
Query: 262 LNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIE 295
L PK T YF + VP F G++ +G ++++++E
Sbjct: 257 LYPKVTTYFGLMLRVPVF-AGIYSLGLNIIKMLE 289
>gi|12323818|gb|AAG51877.1|AC079678_7 hypothetical protein; 33567-31357 [Arabidopsis thaliana]
Length = 305
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 145/243 (59%), Gaps = 28/243 (11%)
Query: 92 DGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD 145
+ + FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+
Sbjct: 79 ESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLG 136
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
N + +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG
Sbjct: 137 KD---NMWMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGA------------ 181
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP--ALGASGAVNAIMLLDIFLN 263
+LY AGA+GGSVF+L HA +S K Q + D + P LGA+G V AI LLD+ L
Sbjct: 182 RLYFAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVPIGKLGANGPVYAITLLDMLLY 241
Query: 264 PKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG--NSNISGSAHLGGAAVAALAWARIRR 321
PK T YF + VP F G++ +G ++++++EG N+ ++ LGG VA +AWARIR+
Sbjct: 242 PKVTTYFGLMLRVPVF-AGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARIRK 300
Query: 322 RGF 324
F
Sbjct: 301 GRF 303
>gi|168002748|ref|XP_001754075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694629|gb|EDQ80976.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 167
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+ N AVF LW+ AD KFM NNF +S+++ LSGR+HT++TSAFS H++ NM+GLY
Sbjct: 1 LVGVNLAVFGLWQFADRKFMTNNFMVSVNSVLSGRIHTIVTSAFSQASFNHLIMNMLGLY 60
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-ALGA 248
FFG + + G +LL LY+ G I GS+ +LVY AF+ + + TP ALGA
Sbjct: 61 FFGTEVAQIFGGRWLLNLYLVGGIAGSIGHLVYCAFVIPWLENIPQHRFNARYTPSALGA 120
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
SGAVNAI+LL I L P T+ +FFIPVPA L GV+LIG D+
Sbjct: 121 SGAVNAIVLLHILLFPSRTIMVNFFIPVPAALFGVYLIGSDV 162
>gi|91806085|gb|ABE65771.1| hypothetical protein At1g74140 [Arabidopsis thaliana]
Length = 301
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 149/281 (53%), Gaps = 52/281 (18%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V +
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHV-MFR 257
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 321
+ +G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 258 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 298
>gi|145327235|ref|NP_001077819.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197436|gb|AEE35557.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 301
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 149/281 (53%), Gaps = 52/281 (18%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V +
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHV-MFR 257
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 321
+ +G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 258 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 298
>gi|79321273|ref|NP_001031280.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197435|gb|AEE35556.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 298
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 148/281 (52%), Gaps = 55/281 (19%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHR---- 254
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 321
+ +G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 255 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 295
>gi|52354229|gb|AAU44435.1| hypothetical protein AT1G74140 [Arabidopsis thaliana]
Length = 298
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 148/281 (52%), Gaps = 55/281 (19%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHR---- 254
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 321
+ +G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 255 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 295
>gi|307105764|gb|EFN54012.1| hypothetical protein CHLNCDRAFT_136040 [Chlorella variabilis]
Length = 395
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 119/196 (60%), Gaps = 10/196 (5%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +V++GLI AN F LWR+A P M + T+S++ +GR+ T +T+AFSH DV H+
Sbjct: 60 SDKVLWGLIAANVGGFALWRLA-PNLMQTHATVSIEGLRAGRVWTALTAAFSHKDVYHLG 118
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR----QGMWV- 237
+NM+GLYFFG +GR G + LL LYMAG + GS+ + ++ + A + + W
Sbjct: 119 ANMVGLYFFGRDVGRLFGGKRLLMLYMAGGVAGSLAHCGWYYYQACKTGEGRYGRARWFG 178
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
PS ALGAS AVNA+ + DI L P T+ IP+PA LLGV + D+ ++G+
Sbjct: 179 FTPS---ALGASAAVNALTVCDILLYPTRTVLLYAIIPMPAALLGVLWLLNDVSGAMDGH 235
Query: 298 -SNISGSAHLGGAAVA 312
+I+ + HLGGAA
Sbjct: 236 RGHIAHAGHLGGAATG 251
>gi|255075983|ref|XP_002501666.1| predicted protein [Micromonas sp. RCC299]
gi|226516930|gb|ACO62924.1| predicted protein [Micromonas sp. RCC299]
Length = 303
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 129/237 (54%), Gaps = 28/237 (11%)
Query: 80 SLLSSQLRKSFFDGKVLFFRAQFPERS--FASFRYRWRS-----------WLRQYGSSEV 126
S+++ LR F DG L R P RS F +R +R L +
Sbjct: 30 SVVARDLR-CFKDGGSLL-RHGAPSRSRRFGYYRNDYRPPPPNNYRRAPPALPNMEGERM 87
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
++ ++ AN VF W DP+ M NF +S ++ +GR+HT++TSAFSH ++ H+ +NM+
Sbjct: 88 LWSIMGANAFVFACWHALDPRLMQQNFLVSEESVYAGRVHTIVTSAFSHYNLGHLGANML 147
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS---------SKRQGMWV 237
LY+FG + R GP+YLL LY+AG + SV ++ + + S+R G W+
Sbjct: 148 ALYYFGRDLSRIFGPKYLLNLYLAGGVAASVTHVAWCRWERERRQSRRRGFISQRAGRWM 207
Query: 238 VDP----SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
+ + PALGASGAVNAI+LL+ + P T+Y +FFIP+P +L + +D+
Sbjct: 208 ENTAGYLTTPPALGASGAVNAIVLLNALVFPTNTIYLNFFIPMPNWLFAALFLSRDL 264
>gi|308801727|ref|XP_003078177.1| Integral membrane protease of the rhomboid family involved in
different forms of regulated intramembrane proteolysis
(ISS) [Ostreococcus tauri]
gi|116056628|emb|CAL52917.1| Integral membrane protease of the rhomboid family involved in
different forms of regulated intramembrane proteolysis
(ISS) [Ostreococcus tauri]
Length = 286
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 25/225 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ ++GLI AN AV+ W ++ D +FM NF +S + GR HT++TSAFSH D+ H+
Sbjct: 56 ENQALWGLIAANGAVYYAWAVSEDTRFMRKNFMVSEEALARGRYHTMLTSAFSHFDLTHL 115
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY---HAFLAMSSKRQGMWVV 238
NMI LYFFG S+ G YLL LY G +G SV ++++ ++ ++G +
Sbjct: 116 GMNMIALYFFGKSVCERFGGRYLLTLYCVGGVGASVAHVLWCRQQRRRRVTRYKEGRGNI 175
Query: 239 ---------------DPSR----TP-ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
SR TP ALGASGAVNAI+ ++ L P T+ +PVP+
Sbjct: 176 FDRMDAYVSRFIEERGASRGYYFTPAALGASGAVNAIVAFEVLLYPFRTILLYAILPVPS 235
Query: 279 FLLGVFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRR 322
LLG + +D++ I + S ++ + HLGGAAV ALA+A IR R
Sbjct: 236 ILLGGLFLLRDIVGIQDSQGSGVAHAGHLGGAAVGALAFASIRTR 280
>gi|12323817|gb|AAG51876.1|AC079678_6 hypothetical protein; 30326-27670 [Arabidopsis thaliana]
Length = 277
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 137/284 (48%), Gaps = 76/284 (26%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWM----------------- 146
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 147 ----------------------------IARTLGPLYLLKLYFAGALGGSVCFLSYHALL 178
Query: 227 AMSSKRQGMWVVDPSRTPA----LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + K +G+ + D T LGA G++ AI LLD+F+ PK T YF + V
Sbjct: 179 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHR---- 233
Query: 283 VFLIGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 324
+ +G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 234 IINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 277
>gi|303286161|ref|XP_003062370.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455887|gb|EEH53189.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 221
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++Y + +AN AVF W DP+FM NF +S ++ GR HTL+TSAFSH DV H+
Sbjct: 3 GEHMLYAIALANVAVFAAWHNLDPRFMRANFLVSEESIKRGRWHTLLTSAFSHRDVSHLA 62
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-- 240
+NM+ LYFFG + R LGP LL LY+ + S ++ + + +G +
Sbjct: 63 ANMLALYFFGRDVARALGPAALLNLYVVAGVVASGAHVAWCEYKRAERAPKGRGIFQSAG 122
Query: 241 ----------SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
+ PALGASGAVNAI+LL+ L P +T+Y +PVP +L + +D
Sbjct: 123 RYWENNVGYLTTPPALGASGAVNAIVLLNALLWPGSTVYLYMVLPVPNAVLAAAFVARD 181
>gi|325179680|emb|CCA14078.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 281
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 17/196 (8%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V++ LI++N V +W A + M +FT S ++ SGR +TL+T FSH V
Sbjct: 85 SDGVIHALILSNVMVTFMWASAITRQRKVRMLTHFTTSYEHLQSGRYYTLLTCVFSHAQV 144
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ +NM+GLYFFG + + LGP+ L LY++ + S + A+ +R+
Sbjct: 145 SHLFANMVGLYFFGRQVAQILGPKRFLYLYLSSGVVSS--------YAAVWEQRK----- 191
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
LGASGAVNAI L + P + +Y +P+PA+L GV IGKD + ++
Sbjct: 192 SKKTILNLGASGAVNAITALSVLTFPHSMVYIFGILPMPAWLFGVVFIGKDFYGWFQEDT 251
Query: 299 NISGSAHLGGAAVAAL 314
+I AHLGGA A+
Sbjct: 252 HIGHFAHLGGAMCGAV 267
>gi|145344872|ref|XP_001416948.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577174|gb|ABO95241.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 160
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 97/166 (58%), Gaps = 10/166 (6%)
Query: 130 LIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
LI N AV+ W D +FM NF +S + GR HT++TSAFSH D+ H+ NMI L
Sbjct: 1 LIGLNGAVYYAWATTEDGRFMRKNFMVSEEALAHGRWHTMLTSAFSHFDLTHLGMNMIAL 60
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-ALG 247
YFFG S+ G YLL LY G +G S ++ AF+ S ++G + TP ALG
Sbjct: 61 YFFGRSVCERFGGRYLLTLYCVGGVGASAAHV---AFVEDSGAKRGYYF-----TPAALG 112
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
ASGAVNAI+ ++ L P T+Y +PVP+ LLG + +D++ I
Sbjct: 113 ASGAVNAIVAFEVLLYPLRTIYLYAIVPVPSILLGGLFLMRDIVGI 158
>gi|146162537|ref|XP_001009676.2| Rhomboid family protein [Tetrahymena thermophila]
gi|146146309|gb|EAR89431.2| Rhomboid family protein [Tetrahymena thermophila SB210]
Length = 239
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 31/244 (12%)
Query: 81 LLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFML 140
LL S +FF G + QF F YR ++ V Y L+ AN VF L
Sbjct: 21 LLQSNQPSNFFQG----MKPQFNYNRVNQFFYRM--------NNPVTYSLLGANLLVFGL 68
Query: 141 W--RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
+ R+ P +NFT+ R HTL T +F+H ++ H+ +NMIGLYFFG I
Sbjct: 69 YQFRVIKPSTFIDNFTLGQKQINQHRYHTLATYSFAHTNLMHLGANMIGLYFFGKFIENQ 128
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
G L KLY GA+ G +F L L + KR S +GAS +++AI +
Sbjct: 129 FGSRALAKLYFGGALLGGIFIL-----LDLYKKR--------SNQIHIGASASISAI-VT 174
Query: 259 DIFLN-PKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317
+ LN P+ T+YF FFIP+PA++LG+ ++ + ++ N ++S HLGG L++
Sbjct: 175 NFTLNFPRLTVYF-FFIPMPAWVLGILILLQSVV-FYGDNGSVSHQGHLGGIVFGGLSYF 232
Query: 318 RIRR 321
+++
Sbjct: 233 LMKK 236
>gi|167525533|ref|XP_001747101.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774396|gb|EDQ88025.1| predicted protein [Monosiga brevicollis MX1]
Length = 310
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
Y LI NTAVF LW + P +M +F S N+ GR +TL+T++FSH + H+ NM
Sbjct: 67 TTYTLIGINTAVFSLWHLQPPHWMIQHFATSEQNWSEGRWYTLLTASFSHQSLMHLAVNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L F + LG LL LY+ G +G S+ ++ LA R G R PA
Sbjct: 127 FVLNSFAPPVAAVLGSAGLLTLYLVGGLGASLAHIYESQELA--DLRAG------RRLPA 178
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL-LGVFLIGKDMLRI-IEGNSNISGS 303
+GASGAV AI + +NP +Y IPVPA L +G FL + +SN+ +
Sbjct: 179 IGASGAVLAICTMFALINPMRPIYVFLIIPVPAILAVGAFLAYDIQASAQLSRHSNVDHA 238
Query: 304 AHLGGA 309
H+GGA
Sbjct: 239 GHIGGA 244
>gi|424512911|emb|CCO66495.1| predicted protein [Bathycoccus prasinos]
Length = 339
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 21/214 (9%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+ VV+ LI ANTAV++ W+ + K M +F +S + +G HT +T+AFSH H+
Sbjct: 118 DTSVVWMLIGANTAVYLAWQEPENFKTMRTHFLVSESSLANGYWHTALTAAFSHNSFNHL 177
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK---------- 231
NM LYFFG + G YLL LY+ G + S+ ++ Y + K
Sbjct: 178 FGNMFTLYFFGRDVALACGGAYLLNLYLVGGVVSSLAHVGYERYERRKRKPHVGFFDKRE 237
Query: 232 --------RQGMWVVDPSRTPA-LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ M + PA LGASGAVN+I+ + + + P +Y +P+ +++ G
Sbjct: 238 HESFFSWFDERMDKIARLAAPASLGASGAVNSIIAMSVMMMPHRKIYLYGILPLESWVFG 297
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
+ +D + I SAHLGGAAV ALA+
Sbjct: 298 AMFLLRDYAGLGT-QDGIGHSAHLGGAAVGALAF 330
>gi|392573164|gb|EIW66305.1| hypothetical protein TREMEDRAFT_72419 [Tremella mesenterica DSM
1558]
Length = 322
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 136/268 (50%), Gaps = 37/268 (13%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLI 131
L +R+ ++ S+++R+++F R P F R+ L Y S ++YG+I
Sbjct: 69 LPTQRYLSTSPSTRVRQTYFP------RTPRPPPGFIR---RFLRRLDSYPSIWIIYGII 119
Query: 132 IANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
N VF+LW+ A DP +M NF +S N ++GR+ TLITS+FSH +H
Sbjct: 120 GLNVGVFLLWQYAWQSYTQFRDPSLYLWMNRNFVMSEANIMAGRIWTLITSSFSHSSGQH 179
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I N +GLYF +G + LY++G + ++ L++H + + ++ WV
Sbjct: 180 IFINCLGLYFMAPLAASLIGSSAFIGLYLSGGVVAAITSLIWHRSVGVRDNKR--WVGSE 237
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVFL--IGKDMLRIIEG 296
GASGA+ + L P+ T F F +P+PA+++ G+F+ + R + G
Sbjct: 238 ------GASGAIYTSLAFYGALFPQTTFLFFFIVPMPAWVMLGGIFVYDLYSATYRPMSG 291
Query: 297 NSNISGSAHLGGA-AVAALAWARIRRRG 323
+ +AH+GG A + AWA +RRRG
Sbjct: 292 TDS---AAHVGGILAGLSAAWA-VRRRG 315
>gi|405118782|gb|AFR93556.1| hypothetical protein CNAG_04056 [Cryptococcus neoformans var.
grubii H99]
Length = 335
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAF 173
+VYGLI N AVF+LW+ A DP F+ NNF ++ N SGR+ TL+TSAF
Sbjct: 125 TLVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFSGRIWTLVTSAF 184
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + HI N +GLYF + +G L LY+ + S+ L YH F R
Sbjct: 185 SHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF-----SRH 239
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
W + GASGA+ A + L P + + F IP+P ++ + D
Sbjct: 240 RWWGSE-------GASGAIYACLAYYGALFPNSQVLMFFVIPMPVWVAIGGIFAWDFYSA 292
Query: 294 IE-GNSNISGSAHLGGAAVAALAWARIRRRGF 324
++ NS + HLGG A ++R GF
Sbjct: 293 VKRPNSGTDSAGHLGGIIYGLGAAMALKRGGF 324
>gi|222619290|gb|EEE55422.1| hypothetical protein OsJ_03549 [Oryza sativa Japonica Group]
Length = 145
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Query: 194 SIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVN 253
I GP +LLKLY+AGA+ GS F+L+ AFLA + G W D SRTPALGAS A N
Sbjct: 14 QISNMFGPAFLLKLYVAGALAGSAFFLLEKAFLAPRRQFYGGW--DNSRTPALGASAAAN 71
Query: 254 AIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG 296
AI+LLDIFL PK +Y FFIP+PA ++G LIG D+LR+ EG
Sbjct: 72 AIILLDIFLYPKKLVYLYFFIPIPAAIMGAILIGADLLRVKEG 114
>gi|320169570|gb|EFW46469.1| hypothetical protein CAOG_04437 [Capsaspora owczarzaki ATCC 30864]
Length = 323
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 115 RSWLRQYGS----SEVVYGLIIANTAVFMLWRIADP----------KFMANNFTISLDNF 160
R W R +G+ VV GL+ N VF L I D F+A NFT+ DN
Sbjct: 112 RGWFRNFGNRLQPKTVVIGLVGLNCTVFALQHIGDALRSQRDYRLSNFLALNFTLHWDNI 171
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
R T+ T A +H D H++ NM+GLY FG+ + L P L +Y A G+ F L
Sbjct: 172 RRHRYWTMFTHALTHKDPMHLLMNMVGLYSFGLQVASYLSPARFLAVYFGAAGLGAAFEL 231
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP--KATLYF-DFFIPVP 277
Y +R+ +R +GAS AV ++ L + + P KA+L+F IP
Sbjct: 232 EY--------ERR-----TQTRHSVIGASDAVLGLISLSVAMFPQSKASLFFLPIAIPTA 278
Query: 278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
LLG+ + D+ R G + AHLGG A L + +R RG
Sbjct: 279 IPLLGI--VAYDLYRCATGVVYTASPAHLGGTAFGVLYYL-LRLRG 321
>gi|283782497|ref|YP_003373252.1| rhomboid family protein [Pirellula staleyi DSM 6068]
gi|283440950|gb|ADB19392.1| Rhomboid family protein [Pirellula staleyi DSM 6068]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 119 RQYGSSEVVYGLIIAN-TAVFMLWRIADPKFMANNFTIS-----LDNFLSGR----LHTL 168
R Y E YG +AN +A L + ++A+ T S + + LS LH L
Sbjct: 6 RDYIRDETPYGGGLANFSATVQLMIVCGVIYLADLLTTSNGKHYISDTLSVNATSFLHPL 65
Query: 169 -----ITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+T+ F H HI+ NMIGLYFFG +I G L+ Y+ + S+F+ V
Sbjct: 66 EWWKFLTAGFVHSARPSHIIGNMIGLYFFGTAIEGRSGRWEFLRFYLLAIVFSSIFWCVT 125
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ +P T A GASG V A+++L L P++T+ FIP+PA+L G
Sbjct: 126 EYYFG-----------NPLST-ARGASGGVTAVVILYCLLYPRSTILLMMFIPMPAWLAG 173
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317
+ +IG D+L++ +NI+ +AH+GGA A W+
Sbjct: 174 ILIIGGDVLQLQNQGANIAFTAHIGGALFALAYWS 208
>gi|348680946|gb|EGZ20762.1| hypothetical protein PHYSODRAFT_298749 [Phytophthora sojae]
Length = 267
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 126 VVYGLIIANTAVFMLW-RIADP----------------KFMANNFTISLDNFLSGRLHTL 168
VV GLI N M W R P + M +FT S + GR +TL
Sbjct: 58 VVLGLISVNAVTTMAWLRAQAPSPRHPAQRLRSFKPSMRTMLTHFTTSTQHLQEGRYYTL 117
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+ FS + H+ +NM+GLYFFG + LG L LY+A + S A
Sbjct: 118 LTAMFSQATLGHLGANMLGLYFFGRQMCDVLGHRKFLGLYLASGVLSS-------AAAVF 170
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
G + LGASGAVN I + I L P TL +P+PA+L G I K
Sbjct: 171 EQHLSGRLSYN------LGASGAVNGITAMSILLFPHGTLLIFGIVPMPAWLAGSLFIFK 224
Query: 289 DMLR-IIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
D + + I AHL GA + + + +RR GF
Sbjct: 225 DAYSFVTDRQDGIGHVAHLSGAFIGGVYYYYLRRGGF 261
>gi|428186653|gb|EKX55503.1| hypothetical protein GUITHDRAFT_50364, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 9/151 (5%)
Query: 130 LIIANTAVFMLWRIADPKFMA-NNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVSNMIG 187
+I AN VF+LW+ + ++M N+FT+S L +LHTL T+ FSH H+V+NM+
Sbjct: 1 IIGANCVVFVLWQNRNLQYMMWNHFTVSTSGVLQDFKLHTLFTAIFSHPHFWHLVANMVT 60
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
L+FFG LG + L+LY+AG + S+ ++++ +A + R R P
Sbjct: 61 LWFFGAECLTFLGAQRFLQLYLAGGLTSSICHVLWPT-VAPKTHRAA------ERRPQFS 113
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
A+GAVNA++ I P+ T+ F IP+PA
Sbjct: 114 ATGAVNAMVAYSILTLPQRTVLLYFVIPIPA 144
>gi|403416136|emb|CCM02836.1| predicted protein [Fibroporia radiculosa]
Length = 332
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 23/232 (9%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA--------DPKF---MAN 151
P R S +R L +++G++ N VF++W +A DP F M
Sbjct: 111 PPRRLQSLWQTFRRKLDSTPPEAIMWGVLALNGVVFVMWHLASIKYRSAGDPGFYRWMIE 170
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
NFT+S N SGR+ TL+TS SH D H++ N + YF ++ LG L LY++G
Sbjct: 171 NFTVSAHNISSGRIWTLLTSCISHEDSSHLLFNALTYYFMAPAVLPMLGNASFLALYLSG 230
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
+ SV + +H + + + GASGA+ AI+ + P+A LY
Sbjct: 231 GLFASVASVFWHKTIKHHNNYS-----------SYGASGALFAIVSFFACVAPRAKLYLF 279
Query: 272 FFIPVPAFLLGVFLIGKDMLR-IIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+PVPA+ L +I D + + + + H+GG + R+R R
Sbjct: 280 AVVPVPAWALVTGIILWDGFSAVTDKRTGTDTAGHIGGICAGIAYFLRLRFR 331
>gi|449018432|dbj|BAM81834.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 322
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 18/197 (9%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLW--RIADPKFMANNFTISLDNFLSGRLHTLITSA 172
RSW + G + LI+ N V++ W R P FM +F SL++ +GR HTL+TS+
Sbjct: 7 RSWASREG--RTILSLILLNGLVYLAWKSRPGGPPFMWRHFACSLESLYAGRTHTLLTSS 64
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
SH+ H++ NM L FG+ + + LGP L LY GA S L+Y KR
Sbjct: 65 ISHMGFLHLLGNMFLLANFGLDVCKVLGPSRFLTLYAGGAFLSSAMSLLY--------KR 116
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLR 292
+ S ++GASG+V A++++ L P+++LY I + A + + D++
Sbjct: 117 -----LRLSGAVSIGASGSVMAVLVMFAMLFPRSSLYV-MGIKMTAQEACLLWVLFDVIG 170
Query: 293 IIEGNSNISGSAHLGGA 309
++ I +AHLGGA
Sbjct: 171 VVGRFGYIDFAAHLGGA 187
>gi|301121082|ref|XP_002908268.1| serine protease family S54, putative [Phytophthora infestans T30-4]
gi|262103299|gb|EEY61351.1| serine protease family S54, putative [Phytophthora infestans T30-4]
Length = 285
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 86/181 (47%), Gaps = 30/181 (16%)
Query: 126 VVYGLIIANTAVFMLW-RIADP----------------KFMANNFTISLDNFLSGRLHTL 168
VV GLI AN AV + W R P + M +FT S + GR +TL
Sbjct: 76 VVLGLISANAAVTIGWMRTQAPSPRHPAQQLRSFQPSMRTMLTHFTTSTQHLQDGRYYTL 135
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+TS FS + H+ +NM+GLYFFG + LG L LY+A + S VY L+
Sbjct: 136 LTSMFSQATLGHLGANMLGLYFFGRQLCDLLGHRKFLGLYLASGVLSSA-AAVYEQHLS- 193
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
T LGASGAVNAI ++I L P TL IP+PA+L G I K
Sbjct: 194 -----------GRLTYNLGASGAVNAITAMNILLLPHGTLLIFGIIPMPAWLGGSLFIFK 242
Query: 289 D 289
D
Sbjct: 243 D 243
>gi|145499170|ref|XP_001435571.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402704|emb|CAK68174.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 24/189 (12%)
Query: 130 LIIANTAVFMLWRI--ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
LI N V+ LW D FM +FT+ + LHT IT +FSH + H++ NM+
Sbjct: 47 LIGINVGVYALWHFPAVDKNFMYRHFTLHPGSMNIRELHTFITYSFSHQNTLHLLFNMVT 106
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
YFFG +I G + LL +Y+AGA+ G M S++ G+ +LG
Sbjct: 107 FYFFGRTIEAYFGSKRLLAIYLAGALVGGF----------MQSRQAGI---------SLG 147
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLG 307
AS A NA++ I P+ + FFIPVPA+++G+ ++ + +G S I AHLG
Sbjct: 148 ASAACNALLTYYICNFPREIILL-FFIPVPAWIVGLLILYQGWAGQGDG-SGIGHDAHLG 205
Query: 308 GAAVAALAW 316
G +A LA+
Sbjct: 206 G-CLAGLAF 213
>gi|406699052|gb|EKD02271.1| hypothetical protein A1Q2_03418 [Trichosporon asahii var. asahii
CBS 8904]
Length = 327
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 99/210 (47%), Gaps = 31/210 (14%)
Query: 130 LIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ N AVF+ W R DP M NF +++ N +GR+ LITS FSH+
Sbjct: 130 ILAINIAVFLGWQYAINTYERFGDPSAYYTMLKNFILNVPNMQAGRIWVLITSCFSHMTT 189
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
HI+ N IGL+F G ++ LG L Y+ I ++ L + R+ W +
Sbjct: 190 THILVNSIGLWFAGPAVASILGTSGYLLFYLGAGIFSALTSLWWQ-------NRKPGWTI 242
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVFLIGKDMLRII-E 295
GASGA+ M + PKAT F IP+PA+ L GVF+ D R++ +
Sbjct: 243 GSE-----GASGAIYGCMAFFGTMFPKATFLLFFVIPMPAWALLSGVFVW--DAWRMVYD 295
Query: 296 GNSNISGSAHLGG---AAVAALAWARIRRR 322
S I G+ H+GG V AL R RR
Sbjct: 296 PASKIDGAGHIGGIIAGVVTALVCKRRYRR 325
>gi|145492260|ref|XP_001432128.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399237|emb|CAK64731.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 24/189 (12%)
Query: 130 LIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
LI N V+ LW D FM +FT+ + LHT IT +FSH + H++ NM+
Sbjct: 47 LIGINVGVYALWHFPAFDKNFMYKHFTLHPGSMSLRELHTFITYSFSHQNTLHLLFNMVT 106
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
YFFG +I G + LL +Y+AGA+ G + M ++ G+ +LG
Sbjct: 107 FYFFGRTIEAYFGSKRLLAVYLAGALVGGL----------MQQRQAGV---------SLG 147
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLG 307
AS A NA++ I P+ + FFIPVPA+++G+ ++ + +G S I AHLG
Sbjct: 148 ASAACNALLTYYICNFPREIILL-FFIPVPAWVVGLLILYQGWAGQGDG-SGIGHDAHLG 205
Query: 308 GAAVAALAW 316
G +A LA+
Sbjct: 206 G-CLAGLAF 213
>gi|281200772|gb|EFA74990.1| rhomboid family protein [Polysphondylium pallidum PN500]
Length = 342
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
FM NFT+S N L R +TL+T+AFSH D++H + NM+GLY G S+ G L L
Sbjct: 161 FMYKNFTLSTQN-LRERPYTLLTAAFSHNDLQHFLFNMLGLYTIGGSLLAATGTPLFLGL 219
Query: 208 YMAGAIGGSVFY--LVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
Y+ GA+ S Y L + +++GM+ LGASGA++A M+ + P
Sbjct: 220 YLGGAVFSSFIYCFLEQRKQQQLLKQQRGMFSYQQVVRHGLGASGALSAAMVSFACMFPH 279
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRR 322
+T +P+PA+ + +G D N+ ++ +AHLGGA L + + R+
Sbjct: 280 STFLLMGIVPMPAWAMVTLYMGYDFYHEYRHSNTGVAHTAHLGGALYGGLFYLTLLRK 337
>gi|393215578|gb|EJD01069.1| rhomboid-domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 330
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA-------DPKF---MANNFTISLDNFLS 162
R+R W Q+ S +V+G+I N VF+ W+ A DP M+ N S N
Sbjct: 117 RFRRWFDQFPSEFIVWGIIGINGVVFLAWQYAIDRAKNGDPSLLIIMSRNVQNSWRNIRE 176
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GRL ++I S FSH + HI+ N + YF I +G + LY G I S+ L+
Sbjct: 177 GRLWSIIGSTFSHNNAGHILLNCMSFYFMAPPIVNLIGNTSFMTLYFFGGISCSMLSLLL 236
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF-LL 281
+ + SKR G + GASGA+ A++ ++PK T IP PA+ ++
Sbjct: 237 NKTV---SKRDGT---------SHGASGAIFAVVSFFACVSPKTTFLIFGVIPAPAWAVV 284
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
G F I + + + + G+ H+GG + + RR
Sbjct: 285 GGFFIWDGLSALSDRRTIFDGAGHVGGILAGVVYYLAKRR 324
>gi|321248479|ref|XP_003191142.1| hypothetical protein CGB_A0390C [Cryptococcus gattii WM276]
gi|317457609|gb|ADV19355.1| hypothetical protein CNB05400 [Cryptococcus gattii WM276]
Length = 307
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 125 EVVYGLIIANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAF 173
+VYGLI N AVF+LW+ A DP F+ NNF ++ N SGR+ TL+TSAF
Sbjct: 125 TLVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFSGRIWTLVTSAF 184
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + HI N +GLYF + +G L LY+ + S+ L YH F +
Sbjct: 185 SHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF-----SQH 239
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVFLI 286
W + GASGA+ A + L P + + F IP+P ++ G+F +
Sbjct: 240 RWWGSE-------GASGAIYACLAYYGALFPNSQVLLFFVIPMPVWVAIGGIFAV 287
>gi|389747060|gb|EIM88239.1| rhomboid-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 314
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 99/229 (43%), Gaps = 24/229 (10%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADP-----------KFMAN 151
P RS F R +L S VVYG++ N VF W +A KFMA
Sbjct: 82 PRRSGLGFFTSLRRFLDGIPPSFVVYGIMALNGIVFAGWWVAIDALKRTRDQTLYKFMAE 141
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
NFT S N+ +GR T +TS FSH HI+ N + YF ++ LG L LY+ G
Sbjct: 142 NFTSSKMNYEAGRWWTALTSCFSHQSFSHILFNGMTFYFMAPAVASILGTSSFLFLYLGG 201
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
I S+F S K + ++GASGA+ +I+ L+P+ T
Sbjct: 202 GIFSSLFSHTLSTLPQSSYKST-------HQISSVGASGAIFSIISFFTCLSPRTTFLLF 254
Query: 272 FFIPVPAFLLGVFLIGKDML------RIIEGNSNISGSAHLGGAAVAAL 314
+P PA+ + I D + +G N G AH+GG A+
Sbjct: 255 GIVPCPAWGVVAGTIAYDGYNSWRESKGQKGIGNTDGLAHIGGVVAGAV 303
>gi|353235267|emb|CCA67283.1| hypothetical protein PIIN_01116 [Piriformospora indica DSM 11827]
Length = 211
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 126 VVYGLIIANTAVFMLWRIA-------DP---KFMANNFTISLDNFLSGRLHTLITSAFSH 175
+VYG++ N +F + +A DP K+M N T S +N GRL TL+TSAF+H
Sbjct: 16 LVYGIMGTNVLIFFCFGVAETAFKNGDPQLLKWMYENSTSSAENIRQGRLWTLVTSAFAH 75
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
+H+ N +GL+ F ++ ++LG LK+Y+ GAIG + ++
Sbjct: 76 QATDHLFMNTLGLWMFCPAVAQSLGSYAFLKVYLTGAIGCDLMSAYWN------------ 123
Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRI 293
T ++GASGA+ AIM ++P+A++ IP+P A + G+FL R
Sbjct: 124 ---QNRFTRSMGASGALCAIMSFTACMSPRASVALYGIIPMPLWAVVAGIFLYDLYGAR- 179
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRRR 322
G+ + + H+GG + + +RRR
Sbjct: 180 SRGHVSTDFAGHIGG-TLTGMGLFLVRRR 207
>gi|330841208|ref|XP_003292594.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
gi|325077157|gb|EGC30889.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
Length = 326
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 110 FRYRWRSWLRQYG--------SSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISL 157
F + +SW R+ +S ++Y LI NTA F+ D + + F +SL
Sbjct: 87 FEFNDKSWSREQKERYFNSTKTSNIIYVLIGINTAAFLYINSNDDYSFQRQIDRGFLLSL 146
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG--- 214
DNF S L TLITS F+H H + NM+GLY G + T+G LYMA I
Sbjct: 147 DNFFSQPL-TLITSFFAHKSFGHFLFNMVGLYTIGPMVLSTIGASSFFGLYMASGIASGL 205
Query: 215 GSVFYLVYHAFLAMSSK--------RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
G +F Y+ A K Q + + S ALGASGA+ +M L PKA
Sbjct: 206 GFLFLQKYYRDQANGHKFDFFGRNTNQYQYSLQRSNQKALGASGAIYGVMATFACLFPKA 265
Query: 267 TLYFDFFIPVPAFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
L IP+PA + +G F + + + I HL G V L + +R +G
Sbjct: 266 ILNLYGVIPIPAIVAVGGFFAYDIYHEVYKSRTGICHIGHLAG-GVYGLGYYFLRLKG 322
>gi|302694325|ref|XP_003036841.1| hypothetical protein SCHCODRAFT_47819 [Schizophyllum commune H4-8]
gi|300110538|gb|EFJ01939.1| hypothetical protein SCHCODRAFT_47819 [Schizophyllum commune H4-8]
Length = 180
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 142 RIADPKFMAN---NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
R DP +A+ N+T S +N +GR+ TL+TSAFSH ++ H+ NM YF G ++ +
Sbjct: 10 RSGDPSLLASMYRNWTGSWENLKAGRVWTLVTSAFSHSEMGHLFMNMFTFYFMGSAVAQM 69
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
LGP++ L LY+ A+ + + + +++ +S+ LGASGA++A++
Sbjct: 70 LGPKHFLTLYLFSAVTSCLGSIAWESYVGRNSR-------------GLGASGAIDAVLGF 116
Query: 259 DIFLNPKATLYFDFFIPVPAFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
P+ T IPVPA+L +G F ++ + +AH+ G + +AW
Sbjct: 117 LACAAPRMTFMIYGIIPVPAWLAVGGFFAYDVYGTAMDNRPGVGTAAHVTG-ILTGIAW 174
>gi|170088108|ref|XP_001875277.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650477|gb|EDR14718.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 273
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 29/235 (12%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK 147
+SFF R RS +S R+ + +L Q + + YG+I N VF +W ++ K
Sbjct: 38 RSFFTSTPSSLRYHPLPRSHSS-RHNFFGFLDQIPQNTIFYGIIGLNATVFAMWFMSTQK 96
Query: 148 F-----------MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
+ M NFT S N SGR+ T +TS FSH D HI N YF +
Sbjct: 97 YKQEHDPSALVWMHQNFTNSWQNISSGRIWTPVTSCFSHKDFGHIFFNGFTFYFMAQPVL 156
Query: 197 RTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
+ LG L LY+ G + ++ + Y ++D PA GASGA+ +++
Sbjct: 157 QMLGGRSFLFLYIGGGLVSALVGMGYAN------------LIDRKDRPAHGASGAIYSVV 204
Query: 257 LLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII---EGNSNISGSAHLGG 308
L + P+ T IP+PA+L L D + GN++ G H+ G
Sbjct: 205 ALLACVAPRMTFQLYGIIPIPAWLAVTGLFAYDTYSTVADKRGNTDTVG--HVAG 257
>gi|407923843|gb|EKG16906.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 267
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 46/237 (19%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKF------------------------------M 149
Q+ S +Y + NTAVF W+ AD +
Sbjct: 39 QHASQRWLYTFLGLNTAVFAAWKYADNTIPFDLKAAFSPETYRQIAKYVQLDKRRLWQGL 98
Query: 150 ANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLK 206
N F D+ GR T IT+AFSH D+ H V NM+ L FG ++ + P L
Sbjct: 99 VNQFVFKTDDPERGRWWTCITAAFSHKDLPHFVFNMLALKSFGDALIAYVPRINPASFLT 158
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
LY+ + GS+ + Y+ A +++Q + A+GASGAV+ + + P A
Sbjct: 159 LYLGAGLAGSLGF--YYQKKAQGNRQQ---------SAAIGASGAVSGLAATMALIAPNA 207
Query: 267 TLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAV-AALAWARIRR 321
F F I +PA+ + I D + + NS + S H+GGAA AA W +RR
Sbjct: 208 KWQFAFIPIGIPAWAMFSAYIAYDAFYLNDPNSRVGHSGHIGGAAFGAAYYWLVVRR 264
>gi|392592913|gb|EIW82239.1| hypothetical protein CONPUDRAFT_54971, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 177
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 142 RIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
R DP KFM +FT+S +N +GR+ T++T AFSH D H + N + L+F S+
Sbjct: 1 RGGDPSLLKFMYKHFTVSYENLRAGRIWTVLTGAFSHSDTSHALMNGLSLFFIAPSVLAL 60
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
L P L LY++GA+G S+ +++ + + P+ GASGA+ A +
Sbjct: 61 LSPPRFLALYISGALGASLTSILWKRYAQIPD------------FPSQGASGAILASIAY 108
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFLIGKD-MLRIIEGNSNISGSAHLGG 308
++P+ T Y F +P PA+ L ++ D + + S + H+GG
Sbjct: 109 LACVSPRTTFYIFFIVPCPAWALLPGMLAYDGYMAYSDARSRTDAAGHVGG 159
>gi|409050225|gb|EKM59702.1| hypothetical protein PHACADRAFT_86988 [Phanerochaete carnosa
HHB-10118-sp]
Length = 317
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 27/206 (13%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMAN-----------NFTISLDNFLSGRL 165
WL S+ + +G++ N AVF W++ + ++ NFT+S+ N +SGR+
Sbjct: 109 WLDSIPSNTIFWGVLGINGAVFCAWQLGAALYQSSGNASLYIALRKNFTVSMQNLMSGRV 168
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TL+T++FSH + HI +N YF + + LG L LY+ G I SV L ++
Sbjct: 169 WTLLTASFSHEGMMHIFTNAFTFYFMAPPVLQFLGTSGFLALYLGGGIFCSVVSLWWNN- 227
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA--FLLGV 283
S K + P+ + + GASGAV A++ + P +P+PA F+ GV
Sbjct: 228 ---SVKNR------PTYS-SYGASGAVYAVISFFACVAPTTRFALFGVLPIPAWLFVTGV 277
Query: 284 FLI-GKDMLRIIEGNSNISGSAHLGG 308
FL+ G + L+ + ++ + + H+GG
Sbjct: 278 FLMDGYESLK--DSHTRVDNAGHIGG 301
>gi|390601280|gb|EIN10674.1| rhomboid-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 314
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 126/300 (42%), Gaps = 42/300 (14%)
Query: 49 HPTFSWRSQQSLSLKTHAFLFNPLLARR--FFTSLLSSQLRKSFFDGKVLFFRAQFPERS 106
H FS S+ S ++ + F + + ARR F SL ++ SF K RA +
Sbjct: 27 HYAFSALSRVSPAVVSGQFFSSRVCARRTIFSPSLSTASGSGSFTSWKAYILRATHRDYR 86
Query: 107 FASFR------------YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF------ 148
ASF + + S + + +I AN VF+ W+ A +F
Sbjct: 87 PASFEERLRSSRGGGGGSGGPGFFNRIPSQVIFWSIIAANGVVFVGWQYAKAQFETGRNT 146
Query: 149 -----MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
M NN T S +N SGR+ T +TS FSH D+ HI N +F ++ LG
Sbjct: 147 GPMIWMLNNVTSSWNNINSGRIWTPLTSCFSHSDLAHIFVNGFSFFFMAPTVLSLLGNAR 206
Query: 204 LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT-PALGASGAVNAIMLLDIFL 262
+ LY G I +SS W R P+ GASGA+ +I+
Sbjct: 207 FIGLYFGGGI--------------ISSAVSLAWSAKAGRDRPSQGASGAIYSIVSYFACN 252
Query: 263 NPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR 321
P+A+ IP PA+L + D ++ NS + H+GG +A +A+A +RR
Sbjct: 253 FPRASFLIFGIIPCPAWLCVTGFLAYDSWSMVNNPNSRTDSAGHVGG-LLAGIAYAILRR 311
>gi|358059401|dbj|GAA94807.1| hypothetical protein E5Q_01461 [Mixia osmundae IAM 14324]
Length = 266
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIAD----PK----FMANNFTISLDNFLSGRLHTLITSAFS 174
+ ++Y L+ AN VF W+ A P+ M FTIS N GR +TLITS FS
Sbjct: 64 TKPLLYSLVGANILVFGAWQYAKEPGAPRGMLARMMRTFTISWHNLQQGRWYTLITSCFS 123
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
+ + H+ +N+I L F + + +G L LYMA + G V L +A+ RQ
Sbjct: 124 QMSLAHLAANLITLVSFAPLVMQVVGNTRFLSLYMAAGLSGGVLQLASNAYY-----RQD 178
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII 294
TPALGASG+++ ++ + P + F IP+P + L+ D+ +
Sbjct: 179 --------TPALGASGSLSGCLMFCACVAPNLQIGLFFVIPMPIKVAIPLLVCWDVYHAM 230
Query: 295 EGNS 298
S
Sbjct: 231 SPQS 234
>gi|393246360|gb|EJD53869.1| rhomboid-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 293
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSAFS 174
VVY ++ NT VF W +A +FM NFT SL N SGR+ TL+TS FS
Sbjct: 90 VVYAILGVNTVVFGAWYMAKNAYTYQNDWRPLQFMLQNFTASLANLSSGRIWTLLTSCFS 149
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H + H N +YF + + LGP + YM I S+ + Y ++ + G
Sbjct: 150 HEALWHFGLNSACIYFMAPGVCQVLGPGTFIAFYMTTGIISSLTSVAYK----FANHQNG 205
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII 294
+LGASGA A + L P A L IP PA+ + D+ ++
Sbjct: 206 Q---------SLGASGAAYATISFFACLFPHAQLLIFGIIPAPAWACVGAVFAWDLWGVL 256
Query: 295 EGNSN--ISGSAHLGGAAVAALAWARIRRRGF 324
N + H+GG ++ +A+ IRR G+
Sbjct: 257 AAQPNALTDSAGHIGG-ILSGIAYYLIRRGGY 287
>gi|443894789|dbj|GAC72136.1| integral membrane protease of the rhomboid family [Pseudozyma
antarctica T-34]
Length = 406
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSG 163
R W R + + V+ +I NT VF+ W R ADP+ M+ NF N G
Sbjct: 191 RFWSR-FDARAVILAVIGVNTLVFVGWAWARENMQRFADPRAMITMSKNFLSGEINMREG 249
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R TL+TS FSH H++ NM+ L F + GP L LY G I SV +V
Sbjct: 250 RWWTLLTSCFSHEAPMHLLFNMVTLGFMSPPVVALTGPTMFLVLYCGGGIISSVVSMVGK 309
Query: 224 AFLAMSSKRQGMWVVDPSRTP-ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+R+ R P + GASG+V AIM + P+A F +P+PA+
Sbjct: 310 RVFETEEQRR--------RRPFSHGASGSVYAIMSTFACVQPRAQFLLFFVLPLPAWACV 361
Query: 283 VFLIGKDMLR-IIEGNSNISGSAHLGGAAVAALAW 316
+ D+ + ++ + H+GG L W
Sbjct: 362 SGIFAWDVAQAVLNPGQRTDSAGHIGGVMAGILFW 396
>gi|328771971|gb|EGF82010.1| hypothetical protein BATDEDRAFT_86744 [Batrachochytrium
dendrobatidis JAM81]
Length = 396
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 25/253 (9%)
Query: 92 DGKVLFFRAQF---PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWR------ 142
D V FR+ F +R ++ W+ + +V ++I N AV ++W
Sbjct: 141 DWPVSLFRSNFRNNTQRELSNQNRDVFQWMEDW--KKVFAIILIINIAVLLMWNSARFMA 198
Query: 143 -----IADPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
++ ++M ++FT+S F RL T +T FSH D+ H NM LY F +
Sbjct: 199 VSMNDVSSLRWMVDHFTVSAKGLFQEHRLWTAMTCCFSHSDLLHFGMNMFVLYSFIQPVV 258
Query: 197 RTLGPEYLLKLYMAGAIGGSV---FYLVYHAFLAMSSKRQ---GMWVVDPSRTPALGASG 250
+LG + LY+ IG S+ ++ Y + +R W ++GASG
Sbjct: 259 LSLGVSTFIGLYLVSGIGSSLASALHIAYRQSVRDQKRRDHPYSQWAAPTPNYNSMGASG 318
Query: 251 AVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI-IEGNSNISGSAHLGGA 309
++ ++ + P + + F +P+PA+ +G + D+ R + + G+ HLGGA
Sbjct: 319 CISGLLSYFVLRYPTSQILLFFVLPMPAWAIGGAAVAYDIYRTATDTGGQVDGAGHLGGA 378
Query: 310 AVAALAWARIRRR 322
V L W R R
Sbjct: 379 LVGIL-WFLARAR 390
>gi|299747341|ref|XP_001836967.2| hypothetical protein CC1G_00103 [Coprinopsis cinerea okayama7#130]
gi|298407475|gb|EAU84584.2| hypothetical protein CC1G_00103 [Coprinopsis cinerea okayama7#130]
Length = 262
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-----------MAN 151
P+R + F L + V+YG++ N VF W ++ K+ M
Sbjct: 44 PKRGYLDF-------LDRIPQKTVMYGILGVNGLVFGAWYMSQQKYKYERDPSAYLWMHQ 96
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
+FT S N GR TL+TS FSH D+ HI N +F + + +G + + LYM
Sbjct: 97 HFTSSWQNLRQGRYWTLLTSCFSHQDMAHIFFNGFTFFFTAPVVLQMIGSKRFIFLYMGC 156
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
+ S L+Y + VD P+LGASGA+ ++ P + Y
Sbjct: 157 GLVSSAASLLYARY------------VDKRDRPSLGASGAIYSVTSFLACAAPTLSFYIY 204
Query: 272 FFIPVPAFLLGVFLIGKDMLRIIEGN-SNISGSAHLGGAAVAALAWARIRR 321
IPVPA+LL + D + ++ + HLGG A A ++ +RR
Sbjct: 205 GIIPVPAWLLVSGIFAWDAYKTVQDKRGTVDTIGHLGGLAAGAASYIVLRR 255
>gi|401889124|gb|EJT53064.1| hypothetical protein A1Q1_00071 [Trichosporon asahii var. asahii
CBS 2479]
Length = 168
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NF +++ N +GR+ LITS FSH+ HI+ N IGL+F G ++ LG L Y
Sbjct: 1 MLKNFILNVPNMQAGRIWVLITSCFSHMTTTHILVNSIGLWFAGPAVASILGTSGYLLFY 60
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
+ I ++ L + R+ W + GASGA+ M + PKAT
Sbjct: 61 LGAGIFSALTSLWWQ-------NRKPGWTIGSE-----GASGAIYGCMAFFGTMFPKATF 108
Query: 269 YFDFFIPVPAFLL--GVFLIGKDMLRII-EGNSNISGSAHLGG---AAVAALAWARIRRR 322
F IP+PA+ L GVF+ D R++ + S I G+ H+GG V AL R RR
Sbjct: 109 LLFFVIPMPAWALLSGVFV--WDAWRMVYDPASKIDGAGHIGGIIAGVVTALVCKRRYRR 166
>gi|387219679|gb|AFJ69548.1| hypothetical protein NGATSA_3032200, partial [Nannochloropsis
gaditana CCMP526]
Length = 133
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 149 MANNFTISLDNFLS-GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
M NFT+S + GR+HTL T+ FSH H++ N + LYFFG LG L L
Sbjct: 1 MVENFTVSGVGVVEHGRIHTLFTAMFSHQSFTHLLVNCVTLYFFGAEAAVLLGARRFLNL 60
Query: 208 YMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKAT 267
Y AG + S+ + + +LA + + + V T ALGASGA+NAI+ IF+ P
Sbjct: 61 YFAGGLASSLGCVAW-PYLAPTLRIPASYRVS-KYTVALGASGALNAIVAWSIFMFPARM 118
Query: 268 LYFDFFIPVPAFLLG 282
+Y +PVPA L+G
Sbjct: 119 VYIYMILPVPAALVG 133
>gi|452837823|gb|EME39764.1| hypothetical protein DOTSEDRAFT_47325 [Dothistroma septosporum
NZE10]
Length = 201
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT-LGPEYLLK 206
F+ +NF +S+D+ +GR HTL+T AFSH+++ H NM GL+ FG + +G ++L
Sbjct: 6 FLTDNFMLSVDSIKAGRYHTLLTCAFSHVELGHFAFNMFGLFTFGGLMAMAGVGGFHVLA 65
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMW---VVDPSRT--PALGASGAVNAIMLLDIF 261
+ AI GS+ L YH S + + +W + +RT +LGASG V +
Sbjct: 66 AGIGSAIFGSLAGL-YHQQSLQSPQGRTVWGRSGGERTRTLVRSLGASGLVMGLSATATC 124
Query: 262 LNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW-ARI 319
L P A + F F IP+P F L G D + G + I +AH+GGA A+ + + +
Sbjct: 125 LMPLAPMSFMFIPIPIPLFALTAVYFGLDAYYLDRGQTRIGHAAHMGGAVFGAVYYFSYL 184
Query: 320 RRRG 323
R+ G
Sbjct: 185 RKYG 188
>gi|294879228|ref|XP_002768610.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239871281|gb|EER01328.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 277
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+RYR++ W+ + V +++ +++W A KFM NFT+S +N L GR HTL
Sbjct: 139 EWRYRYKRWIDEKTPYPVTTTMLLLAGVTYLVWGFAPSKFMNRNFTVSRENLLHGRFHTL 198
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T++ SH H++ N + ++ +G + R LG L+++ + A+ GS+ ++ L
Sbjct: 199 LTASLSHTSFTHLLVNSLVVFVYGSQLERLLGGPALIRIAITSAVAGSLGHI-----LTA 253
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
S KR A+G SG ++ L
Sbjct: 254 SDKRDA----------AVGGSGVAFGLLTASCLL 277
>gi|452823614|gb|EME30623.1| rhomboid-like protein isoform 2 [Galdieria sulphuraria]
Length = 349
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
+ F E S ++R R GS ++ L+ N V++ W+I F++ +FT SL
Sbjct: 71 SMFNELSDMAYRRVKRDLKTPEGS--LLLALVGMNAVVYLAWKIPSFVPFLSRHFTCSLS 128
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
GR+HTL+T FSH H+ SNM L FG + R + PE LY+AG +
Sbjct: 129 TVKGGRVHTLLTCNFSHAGFFHLFSNMFLLMHFGSDVCRIITPERFFVLYLAGGL----- 183
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
+ S + +LGASG+V AIM + L P +YF F P+ A
Sbjct: 184 --------SSSLTSLLSKYLLRGDALSLGASGSVMAIMFMYAMLFPNRDIYF-FGYPLKA 234
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V D ++ I +AHLGGAA LA+ ++R
Sbjct: 235 KDACVIWALLDATGLLGNFGRIDFAAHLGGAAF-GLAYYEYKKR 277
>gi|336386238|gb|EGO27384.1| hypothetical protein SERLADRAFT_382112 [Serpula lacrymans var.
lacrymans S7.9]
Length = 321
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 27/220 (12%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRL 165
W+ +S + YG+I N VF+ W+ A +F+ +NF + + N SGR+
Sbjct: 113 WIESIPNSVIFYGIIGLNVGVFLTWQAATATWQQTGDTSLIRFLRDNFVVEMRNISSGRI 172
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TL+TS FSH D H + N + +F ++ + LG L LY G I + L ++
Sbjct: 173 WTLVTSCFSHRDFSHALFNGLTFFFMAPAVMQMLGKTRFLGLYFIGGILSGLTSLSWND- 231
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA--FLLGV 283
+V + GASGA+ AI P+AT F IP PA FL G+
Sbjct: 232 -----------LVKHHPIASHGASGAIYAIAAYFACALPRATFLIFFVIPCPAWVFLPGI 280
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
LI I N+ + H+GG +A +A+ RR G
Sbjct: 281 -LIYDGYRSISNKNTTTDTAGHVGG-LLAGIAYFAARRFG 318
>gi|452823615|gb|EME30624.1| rhomboid-like protein isoform 1 [Galdieria sulphuraria]
Length = 343
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
+ F E S ++R R GS ++ L+ N V++ W+I F++ +FT SL
Sbjct: 71 SMFNELSDMAYRRVKRDLKTPEGS--LLLALVGMNAVVYLAWKIPSFVPFLSRHFTCSLS 128
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
GR+HTL+T FSH H+ SNM L FG + R + PE LY+AG +
Sbjct: 129 TVKGGRVHTLLTCNFSHAGFFHLFSNMFLLMHFGSDVCRIITPERFFVLYLAGGL----- 183
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
+ S + +LGASG+V AIM + L P +YF F P+ A
Sbjct: 184 --------SSSLTSLLSKYLLRGDALSLGASGSVMAIMFMYAMLFPNRDIYF-FGYPLKA 234
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V D ++ I +AHLGGAA LA+ ++R
Sbjct: 235 KDACVIWALLDATGLLGNFGRIDFAAHLGGAAF-GLAYYEYKKR 277
>gi|367001270|ref|XP_003685370.1| hypothetical protein TPHA_0D03000 [Tetrapisispora phaffii CBS 4417]
gi|357523668|emb|CCE62936.1| hypothetical protein TPHA_0D03000 [Tetrapisispora phaffii CBS 4417]
Length = 346
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ ++Y L+ N VFM+W+ PK F+ + N S +LI SAFSH + H
Sbjct: 142 THLIYTLLGINAVVFMMWQ--SPKSWRFLQRYMLLEKSNIYSK--WSLIGSAFSHQEFWH 197
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGMWVV 238
+ NM+ L+ FG S+ LG LYM AI GS+F L Y A +AM
Sbjct: 198 LGMNMLALWSFGTSLATMLGVSNFFSLYMNSAIVGSLFSLWYPKIARIAMIG-------- 249
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEG 296
P+LGASGA+ + +L PKA L FF P+P FL +G ++ +
Sbjct: 250 -----PSLGASGALFGVFGCFAYLFPKAKLLL-FFFPIPGGAWVAFLGAVGWNLAGCVLR 303
Query: 297 NSNISGSAHLGGAAVAA 313
+ +AHLGG+A+
Sbjct: 304 WGSFDYAAHLGGSAIGV 320
>gi|428186510|gb|EKX55360.1| hypothetical protein GUITHDRAFT_52711, partial [Guillardia theta
CCMP2712]
Length = 157
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 134 NTAVFMLWR-IADPKFMANNFTISLDNFL-SGRLHTLITSAFSHIDVEHIVSNMIGLYFF 191
N VF +W+ ++ +FMA NF IS GR HT+ITS FSH D H+ +NM L+FF
Sbjct: 5 NVVVFCMWQNLSWRRFMAKNFAISTAAVTQEGRFHTIITSFFSHYDWVHLGANMCCLWFF 64
Query: 192 GMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGA 251
G R LG L LY+ G + S+F +++ + + +R + +GA
Sbjct: 65 GAETLRILGGRKFLALYVGGGLVSSIFQVLWPRIAPEKVRYSPYQLGLGARQES--CNGA 122
Query: 252 VNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
VNA++ +I P + PVPA LG+ +
Sbjct: 123 VNAVVAYNILTYPSRIILIYAIFPVPAAALGLMFL 157
>gi|255714867|ref|XP_002553715.1| KLTH0E05390p [Lachancea thermotolerans]
gi|238935097|emb|CAR23278.1| KLTH0E05390p [Lachancea thermotolerans CBS 6340]
Length = 334
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 124 SEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +VYGLI N VF LWR+ +F+ + D+ S +LI SAFSH +V H+
Sbjct: 132 SSLVYGLIGLNCGVFALWRVPQCWRFLQRYMLLEKDHIYSK--WSLIGSAFSHQEVWHLG 189
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ L+ FG ++ LGP + LY+ A+ GS+ L Y +S
Sbjct: 190 MNMLALWSFGTTVATMLGPANFMSLYLNSALAGSLLSLWYPRIARISMM----------- 238
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
P+LGASGA+ + +L P A + F P+P FL M+ G + G
Sbjct: 239 APSLGASGALFGVFGCFSYLIPHAKIML-FVFPIPGGAWLAFL--GSMVWNAAGCALRWG 295
Query: 303 S----AHLGGAAVAALAWA 317
S AHLGG +VA + +A
Sbjct: 296 SFDYAAHLGG-SVAGIVYA 313
>gi|66811524|ref|XP_639942.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|60466888|gb|EAL64932.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 341
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 123 SSEVVYGLIIANTAVFMLWRIAD----PKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
SS V+Y +I N A++M D + + NF +SLDNF S + TL+TS F+H D
Sbjct: 142 SSSVIYAIIGINVAIWMFLNSDDSYSFQRMIGKNFMLSLDNFKSQPI-TLLTSMFAHTDG 200
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H++ M LY G ++ +LG +YM I V FLA+
Sbjct: 201 FHLL--MFALYSLGPNVLYSLGSSAFFGMYMGAGILSGV------GFLAVQKFYNSKNYY 252
Query: 239 DPSR---TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
D R T ALGASGA++ +++L L P+ TL IPVPA LL
Sbjct: 253 DQKRLQNTRALGASGAISGVLMLFACLYPRMTLNIYGIIPVPAALL 298
>gi|342321150|gb|EGU13085.1| Hypothetical Protein RTG_00611 [Rhodotorula glutinis ATCC 204091]
Length = 338
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADP---KFMANNFTISLDNFLS 162
WR + +V LI N AV+ W R D +F+ +NFT+S NF
Sbjct: 127 WRDRINSIPPMWMVGVLIALNLAVYAAWQYGFELARRFRDASWLRFLQDNFTVSWHNFTQ 186
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GR+ TL+TS FSH HI+ NM+ L+FF + LG + LY+ + S L +
Sbjct: 187 GRVWTLLTSTFSHEATGHILINMLSLFFFAPGVITLLGNTGFISLYVFAGVTASAVSLFF 246
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ F + A GASGA I+ L P+ F +PVPA+L+
Sbjct: 247 NRFFNKETPNYS----------AHGASGAAYGIVSFFAALFPRDKFLLFFVLPVPAWLVV 296
Query: 283 VFLIGKDMLRIIEGNSNISGSA-HLGG 308
+ D+ + + +S SA H+GG
Sbjct: 297 SGVFAYDLYSSLFRRNGMSDSAGHVGG 323
>gi|375011064|ref|YP_004988052.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359346988|gb|AEV31407.1| putative membrane protein [Owenweeksia hongkongensis DSM 17368]
Length = 270
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMIGLY 189
+IA + L + F+ + +T + L G+ + +I+S F H+D H++ NM+ L+
Sbjct: 10 LIAANVIISLQGFKNRAFL-DKWTFEVGKILGGKEYYRMISSGFVHVDGNHLLFNMLSLF 68
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
FF +I R+LG E LL +Y + GS+F LV H + A+GAS
Sbjct: 69 FFAGNIERSLGIEGLLAVYFGSLLAGSLFSLVVHR--------------NSPGYRAVGAS 114
Query: 250 GAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVFLIGKDMLRIIEGNSNISGSAHLG 307
GAV+ ++ I L P L F+P+ PA++ G+ + + I N+ AHLG
Sbjct: 115 GAVSGVVFAAIALFPGMKLGL-LFLPIFFPAWVFGLGFVAYSIYGIRSQRDNVGHEAHLG 173
Query: 308 GAAVAAL 314
GA V L
Sbjct: 174 GAIVGLL 180
>gi|87308794|ref|ZP_01090933.1| hypothetical protein DSM3645_11162 [Blastopirellula marina DSM
3645]
gi|87288505|gb|EAQ80400.1| hypothetical protein DSM3645_11162 [Blastopirellula marina DSM
3645]
Length = 300
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 28/205 (13%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--------LHTL----- 168
G +V L+I N VF + + +A F + F+ G LH L
Sbjct: 21 GGRSMVNTLVIINVIVFFVDWLVFGSRLAGYFDMQAGGFVPGLASVHADTLLHPLMWWRF 80
Query: 169 ITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+T F H D+ HI+ NM L+ FG I G L++Y+ + G VF+ A
Sbjct: 81 LTYGFLHSQSDIWHIIGNMFVLWMFGRQIEERYGGAEFLRIYLVSVVLGGVFW---SAVC 137
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ G +GASGAV +++L I P+ T+Y PVPA+L+GV +I
Sbjct: 138 LATGSMNG---------SVVGASGAVTTVLILFICNYPRVTIYVSLLFPVPAWLVGVVMI 188
Query: 287 GKDMLRII-EGNSNISGSAHLGGAA 310
G +++ G SN++ + HL GAA
Sbjct: 189 GFNVMGAFGNGQSNVAFTVHLAGAA 213
>gi|442770672|gb|AGC71381.1| putative Rhomboid family protein [uncultured bacterium
A1Q1_fos_1815]
Length = 281
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 20/199 (10%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL---DNFLSGRLHTLITSAFSH-- 175
+ + V+ LII N A++++ + P+ ++L D+ L L +T F+H
Sbjct: 21 WSNRSVISWLIIINVALYVIDILVSPRTHDVTEFLALHSSDSNLPWMLWRTLTYGFAHSP 80
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
+V H+ NM+GL+ G ++ G L++Y+ + G +L+ H++ S G+
Sbjct: 81 YNVFHLFWNMLGLWMLGRAVEELYGKWEFLRIYLVAVVLGGAGWLLRHSW----SGETGV 136
Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIE 295
LGASGAV + +L I P+ L IP PA+L+GVFL+ ++++ +
Sbjct: 137 ---------VLGASGAVCCVEMLFILNFPRVILMIWGVIPTPAWLVGVFLVAGNLIQ--D 185
Query: 296 GNSNISGSAHLGGAAVAAL 314
SNI+ HL G A AA+
Sbjct: 186 SRSNIAIDVHLIGIAFAAV 204
>gi|223935890|ref|ZP_03627805.1| Rhomboid family protein [bacterium Ellin514]
gi|223895491|gb|EEF61937.1| Rhomboid family protein [bacterium Ellin514]
Length = 282
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ H L+TSAF H + H+ NM GLY FG I GP L +Y AG IGG +
Sbjct: 45 QYHRLVTSAFLHANWRHLFFNMFGLYAFGRLIESIHGPLMFLSIYFAGIIGGDLL----- 99
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLG 282
+W+ A GASG V I+ IFL P + F I +P +L
Sbjct: 100 ----------ALWLHRNHEYRAYGASGGVCGIVFAAIFLFPGIGVSMMFIPISIPGWLYV 149
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
V + + I+G N+ AHLGGA ++
Sbjct: 150 VIFLTSEFHGTIKGKDNVGHDAHLGGAIIS 179
>gi|71009442|ref|XP_758274.1| hypothetical protein UM02127.1 [Ustilago maydis 521]
gi|46098016|gb|EAK83249.1| hypothetical protein UM02127.1 [Ustilago maydis 521]
Length = 392
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 27/207 (13%)
Query: 126 VVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFS 174
V+Y +I N VF+ W R +DP+ F++ NF L N GR T++TS S
Sbjct: 187 VLYTIIALNVLVFVGWMYASESLRRFSDPRAYIFLSKNFLSGLTNVSDGRWWTMLTSCVS 246
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL--AMSSKR 232
H ++ H + NM+ L F + GP + LY + S+ ++ A + A KR
Sbjct: 247 HEELNHFLLNMVSLAFMAPPVLALTGPTTFVLLYFGAGMVSSIVSMIGKALVPPATQQKR 306
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM-- 290
+ GASG+V AIM ++P AT F IP PA+ + D+
Sbjct: 307 GSF---------SHGASGSVYAIMSTFACVHPTATFLIFFVIPAPAWACVSGIFAWDLWH 357
Query: 291 -LRIIEGNSNISGSAHLGGAAVAALAW 316
+ +G ++ +G H+GG L W
Sbjct: 358 AAKTPKGRTDSAG--HVGGILAGILFW 382
>gi|449685783|ref|XP_002168423.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Hydra magnipapillata]
Length = 307
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 105/238 (44%), Gaps = 32/238 (13%)
Query: 80 SLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFM 139
S L+ + + + K L FR + E W W R +V +I NT VF+
Sbjct: 68 SKLTDKFSRGHGNNKALIFRNKLNE---------W--WNRLSYGQKVTVCIISLNTCVFL 116
Query: 140 LWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
W+I +FM N F S N R L+ S FSH + H +NM L+ F I
Sbjct: 117 CWKITPAHRFMKNWFLCSPTN---KRCSPLLLSVFSHSEAWHFFTNMFVLWSFSPLIQSV 173
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
LG E L Y+ GG+ L+ H FL +S +G+ P+LGASGA+ A++ L
Sbjct: 174 LGTEQFLAFYLT---GGTFASLISH-FLKVS---RGI------SVPSLGASGALLAVLAL 220
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGSAHLGGAAVAA 313
P++ L F+P F G L G D+ ++ G +AHLGG A
Sbjct: 221 CCIEKPESRLSI-VFLPFFTFSAGTALYGIIALDLTGLVLGWKVFDHAAHLGGTLFGA 277
>gi|395330567|gb|EJF62950.1| rhomboid-domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 315
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-----------MANNFTISLDNFL 161
R+R L + + +G+I N VF+ W+ A K+ M N+F S DN
Sbjct: 103 RFRDRLNAIPGNVLFWGIIGLNGVVFVSWQWAWAKYKSMGDASSYIWMRNHFIASADNIK 162
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+GR +TL+T+ FSH D HI+ N YF + LG L LY+ G I S+
Sbjct: 163 AGRWYTLLTACFSHADTSHILFNGFTFYFVAPLVISILGNAGFLSLYLGGGIVSSL---- 218
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF-- 279
A +A + +QG PS + GASGA+ +++ + P AT Y +P+PA+
Sbjct: 219 --AGIAWRNYKQGN---QPSGS--YGASGAIYSVISFFACVAPTATFYLFGVLPLPAWGV 271
Query: 280 LLGVFL 285
+ G+FL
Sbjct: 272 VTGIFL 277
>gi|421465697|ref|ZP_15914384.1| peptidase, S54 family [Acinetobacter radioresistens WC-A-157]
gi|400203964|gb|EJO34949.1| peptidase, S54 family [Acinetobacter radioresistens WC-A-157]
Length = 206
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG SI + +Y L G +FYL
Sbjct: 43 GQYDRFITHGFVHADGAHLLFNMITLFFFG-SIIESFYRQYFYDL------GFVLFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + + SR +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIIAILPSYLKHK-----NDSRWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V I + GNSNI+ SAHL GAA + + R
Sbjct: 150 FAVLYIAYSIWSGKRGNSNINHSAHLWGAAYGVIMTVILEPR 191
>gi|408785632|ref|ZP_11197375.1| hypothetical protein C241_04762 [Rhizobium lupini HPC(L)]
gi|424912365|ref|ZP_18335742.1| putative membrane protein [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392848396|gb|EJB00919.1| putative membrane protein [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|408488527|gb|EKJ96838.1| hypothetical protein C241_04762 [Rhizobium lupini HPC(L)]
Length = 257
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++F H F+
Sbjct: 75 TAITYAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLACAIAGALF----HGFV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
A +S+ P +GASGAV+ ++ L+PK ++ +P+PAF+
Sbjct: 131 APTSE-----------GPLIGASGAVSGVVAAYFLLHPKVRVWVLVLMRIPLPLPAFIPL 179
Query: 283 VFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRG 323
IG+ L + G N+S AH+GG A+ +RRRG
Sbjct: 180 ALWIGQQFLMLALGLEENVSWGAHVGGILAGAIMVIFMRRRG 221
>gi|407006730|gb|EKE22564.1| hypothetical protein ACD_6C00783G0003 [uncultured bacterium]
Length = 205
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG S+ + +YL L G +FYL
Sbjct: 43 GQYDRFITHGFIHADGAHLLFNMITLFFFG-SVIESFYRQYLYDL------GFILFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + + +R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIAAILPSYLKHK-----NDARWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V I + +GNSNI+ SAHL GAA +
Sbjct: 150 FAVLYIAYSIWSGKKGNSNINHSAHLWGAAYGVI 183
>gi|365765697|gb|EHN07204.1| Pcp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 346
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+GL+ FG S+ LG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLGLWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 311 AAHLGGSMMGVL 322
>gi|255319127|ref|ZP_05360345.1| rhomboid family protein [Acinetobacter radioresistens SK82]
gi|262379259|ref|ZP_06072415.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|421854854|ref|ZP_16287239.1| hypothetical protein ACRAD_02_02130 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|255303773|gb|EET82972.1| rhomboid family protein [Acinetobacter radioresistens SK82]
gi|262298716|gb|EEY86629.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|403189869|dbj|GAB73440.1| hypothetical protein ACRAD_02_02130 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 206
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG SI + +Y L G +FYL
Sbjct: 43 GQYDRFITHGFVHADGAHLLFNMITLFFFG-SIIESFYRQYFYDL------GFVLFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + + SR +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIIAILPSYLKHK-----NDSRWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V I + GNSNI+ SAHL GAA + + R
Sbjct: 150 FAVLYIAYSIWSGKRGNSNINHSAHLWGAAYGVIMTVILEPR 191
>gi|262375820|ref|ZP_06069052.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309423|gb|EEY90554.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 205
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG S+ + +YL L G +FYL
Sbjct: 43 GQYDRFITHGFIHADGTHLLFNMITLFFFG-SVIESFYRQYLYDL------GFILFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + + +R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIAAILPSYLKHK-----NDARWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
V + + +GNSNI+ SAHL GAA
Sbjct: 150 FAVLYVAYSIWSGKKGNSNINHSAHLWGAA 179
>gi|156357624|ref|XP_001624315.1| predicted protein [Nematostella vectensis]
gi|156211085|gb|EDO32215.1| predicted protein [Nematostella vectensis]
Length = 221
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 16/188 (8%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
G+I NT VF+LW+I P+ A+ + + + + T++TS FSH+D H+ NM L
Sbjct: 14 GIIFVNTVVFLLWKIPAPRMQASMWRWFISHPIIASPVTILTSCFSHMDFWHLAINMYVL 73
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F +I LG E + Y++G + F +++S+ + P R P+LGA
Sbjct: 74 WSFAPTIQALLGREQFIAFYLSGGM-----------FASLASQVFRVLAKQPIR-PSLGA 121
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGSAH 305
SGA+ A++ L P+ L F+P +F G L+G D+ ++ S +AH
Sbjct: 122 SGALFAVLSLICIHLPETELSL-IFLPWFSFSAGKALMGVVALDVAGLVFRWSLFDHAAH 180
Query: 306 LGGAAVAA 313
LGG A
Sbjct: 181 LGGVIFGA 188
>gi|388854089|emb|CCF52239.1| uncharacterized protein [Ustilago hordei]
Length = 350
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 108 ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADPK---FMANNFTIS 156
AS R+ S L Q S V+Y L+ N VF+ W + +D + F+ NF
Sbjct: 132 ASLDTRFFSGLPQ---SFVLYTLLALNFLVFISWLYASETLRKFSDSRPFIFLCKNFLSG 188
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
N GR T+ITS SH + H + NMI L F + GP L LY + S
Sbjct: 189 WLNLSEGRWWTMITSCLSHAQLGHFLVNMISLSFMAPPVLALTGPSTFLALYFGAGVASS 248
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGASGAVNAIMLLDIFLNPKATLYFDFF 273
+ ++ G VV + A GASG+V AIM ++PKAT F
Sbjct: 249 IVSMI------------GKKVVHDDKEGADFSHGASGSVYAIMSTFACVHPKATFLMFFV 296
Query: 274 IPVPAFLLGVFLIGKDMLRIIEGNSNISGSA-HLGGAAVAALAW 316
IP PA+ + D+ + SA HLGG A L W
Sbjct: 297 IPAPAWACVTGIFAWDLWHAANRPGGRTDSAGHLGGIATGILFW 340
>gi|390333097|ref|XP_003723640.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Strongylocentrotus purpuratus]
gi|390333099|ref|XP_781024.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Strongylocentrotus
purpuratus]
Length = 356
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 96/210 (45%), Gaps = 21/210 (10%)
Query: 104 ERSFASFRYRWRSWL-RQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFL 161
ER R W R G+ +VV G+++AN AVF WRI A FM F S +
Sbjct: 127 ERKQGELREMMNQWYSRLSGTQKVVLGIVVANVAVFAFWRIPAMQHFMIQWF--SANPAA 184
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S +I S FSH + H+ NM L+ F SIG LG E L +Y++ V
Sbjct: 185 SATCLPMILSVFSHHSLWHLGVNMYVLWSFSGSIGSVLGKEQFLAMYLSAG--------V 236
Query: 222 YHAFLAMSSKRQGMWVVDPSR-TPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPA 278
+ +F + + K + SR P+LGASGA+ A++ P A L F FI A
Sbjct: 237 WASFASYALK------IATSRFNPSLGASGAIMAVLGAVCVQYPDARLAIVFLPFITFSA 290
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
V L+G + ++ G +AHL G
Sbjct: 291 STGLVGLLGMETTGVLLGWQFFDHAAHLAG 320
>gi|388582242|gb|EIM22547.1| hypothetical protein WALSEDRAFT_68015 [Wallemia sebi CBS 633.66]
Length = 243
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
G++ VYG+ + + A + R DPK FM NFT S N SGR+ TL+TS+F H +
Sbjct: 54 GANVAVYGVFVFSDAQWK--RFNDPKWMRFMLKNFTASWYNISSGRIWTLVTSSFLHTRL 111
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
+ ++ NM+ YF LG L LY G + S L
Sbjct: 112 DSLIFNMLTFYFMAPQAIAMLGARTFLMLYCGGGLAASAVTL------------------ 153
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
P+ GASGAV + + P AT F +PV A++ L+ D NS
Sbjct: 154 ---SNPSNGASGAVGSTLGFFAASFPNATFSLYFLLPVQAWMAVGGLVAWDAYNSF--NS 208
Query: 299 NISGSAHLG--GAAVAALAWARIRRRG 323
S +AH VA +A+A +R RG
Sbjct: 209 PYSANAHKSRLSGTVAGVAFAMLRMRG 235
>gi|410084152|ref|XP_003959653.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
gi|372466245|emb|CCF60518.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
Length = 343
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 15/191 (7%)
Query: 126 VVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ NTA+F LW++ +F+ + D+ S +++ SAFSH + H+ N
Sbjct: 143 LVYILLGINTAIFGLWQLPRCWRFLQKYMLLQKDHIQSK--WSIVGSAFSHQEFWHLGFN 200
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y MS P
Sbjct: 201 MLALWSFGTSLASMLGTSNFFSLYMNSAIAGSLFSLWYPKIARMSLM-----------GP 249
Query: 245 ALGASGAVNAIMLLDIFLNPKAT-LYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS 303
+LGASGA+ +M +L P A L F F IP A++ + + + + + +
Sbjct: 250 SLGASGALFGVMGCFSYLIPNAKILLFVFPIPGGAWVAFLGTLAWNTAGCVLRWGSFDYA 309
Query: 304 AHLGGAAVAAL 314
AHLGG+ + +
Sbjct: 310 AHLGGSLIGVI 320
>gi|403675980|ref|ZP_10938063.1| hypothetical protein ANCT1_15131 [Acinetobacter sp. NCTC 10304]
Length = 205
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDTNWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNS+I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNSHINHSAHLWGAAYGVIVTILIEPR 191
>gi|421694815|ref|ZP_16134432.1| peptidase, S54 family [Acinetobacter baumannii WC-692]
gi|404567050|gb|EKA72178.1| peptidase, S54 family [Acinetobacter baumannii WC-692]
Length = 205
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNS+I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNSHINHSAHLWGAAYGVIVTILIEPR 191
>gi|184157260|ref|YP_001845599.1| membrane protein [Acinetobacter baumannii ACICU]
gi|332872883|ref|ZP_08440847.1| peptidase, S54 family [Acinetobacter baumannii 6014059]
gi|384130925|ref|YP_005513537.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384142329|ref|YP_005525039.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236626|ref|YP_005797965.1| membrane protein [Acinetobacter baumannii TCDC-AB0715]
gi|387124836|ref|YP_006290718.1| hypothetical protein ABTJ_02832 [Acinetobacter baumannii MDR-TJ]
gi|407931957|ref|YP_006847600.1| hypothetical protein M3Q_1277 [Acinetobacter baumannii TYTH-1]
gi|416148147|ref|ZP_11602196.1| uncharacterized membrane protein [Acinetobacter baumannii AB210]
gi|417570079|ref|ZP_12220936.1| peptidase, S54 family [Acinetobacter baumannii OIFC189]
gi|417577407|ref|ZP_12228252.1| peptidase, S54 family [Acinetobacter baumannii Naval-17]
gi|417869269|ref|ZP_12514261.1| membrane protein [Acinetobacter baumannii ABNIH1]
gi|417872657|ref|ZP_12517552.1| membrane protein [Acinetobacter baumannii ABNIH2]
gi|417877078|ref|ZP_12521813.1| membrane protein [Acinetobacter baumannii ABNIH3]
gi|417880718|ref|ZP_12525187.1| membrane protein [Acinetobacter baumannii ABNIH4]
gi|421202379|ref|ZP_15659530.1| membrane protein [Acinetobacter baumannii AC12]
gi|421535516|ref|ZP_15981775.1| membrane protein [Acinetobacter baumannii AC30]
gi|421631046|ref|ZP_16071735.1| peptidase, S54 family [Acinetobacter baumannii OIFC180]
gi|421651481|ref|ZP_16091850.1| peptidase, S54 family [Acinetobacter baumannii OIFC0162]
gi|421656644|ref|ZP_16096949.1| peptidase, S54 family [Acinetobacter baumannii Naval-72]
gi|421689194|ref|ZP_16128878.1| peptidase, S54 family [Acinetobacter baumannii IS-143]
gi|421702781|ref|ZP_16142257.1| hypothetical protein B825_05956 [Acinetobacter baumannii ZWS1122]
gi|421706531|ref|ZP_16145944.1| hypothetical protein B837_05666 [Acinetobacter baumannii ZWS1219]
gi|421792506|ref|ZP_16228659.1| peptidase, S54 family [Acinetobacter baumannii Naval-2]
gi|424053298|ref|ZP_17790830.1| hypothetical protein W9G_01987 [Acinetobacter baumannii Ab11111]
gi|424060768|ref|ZP_17798259.1| hypothetical protein W9K_01882 [Acinetobacter baumannii Ab33333]
gi|424063040|ref|ZP_17800525.1| hypothetical protein W9M_00323 [Acinetobacter baumannii Ab44444]
gi|425747719|ref|ZP_18865717.1| peptidase, S54 family [Acinetobacter baumannii WC-348]
gi|425752794|ref|ZP_18870701.1| peptidase, S54 family [Acinetobacter baumannii Naval-113]
gi|445456321|ref|ZP_21445767.1| peptidase, S54 family [Acinetobacter baumannii OIFC047]
gi|445466351|ref|ZP_21450330.1| peptidase, S54 family [Acinetobacter baumannii OIFC338]
gi|445475286|ref|ZP_21453288.1| peptidase, S54 family [Acinetobacter baumannii Naval-78]
gi|183208854|gb|ACC56252.1| uncharacterized membrane protein [Acinetobacter baumannii ACICU]
gi|322507145|gb|ADX02599.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
gi|323517124|gb|ADX91505.1| uncharacterized membrane protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332738894|gb|EGJ69757.1| peptidase, S54 family [Acinetobacter baumannii 6014059]
gi|333365154|gb|EGK47168.1| uncharacterized membrane protein [Acinetobacter baumannii AB210]
gi|342231040|gb|EGT95859.1| membrane protein [Acinetobacter baumannii ABNIH1]
gi|342233293|gb|EGT98032.1| membrane protein [Acinetobacter baumannii ABNIH2]
gi|342236438|gb|EGU00960.1| membrane protein [Acinetobacter baumannii ABNIH3]
gi|342239554|gb|EGU03953.1| membrane protein [Acinetobacter baumannii ABNIH4]
gi|347592822|gb|AEP05543.1| putative membrane protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879328|gb|AFI96423.1| putative membrane protein [Acinetobacter baumannii MDR-TJ]
gi|395550527|gb|EJG16536.1| peptidase, S54 family [Acinetobacter baumannii OIFC189]
gi|395570628|gb|EJG31290.1| peptidase, S54 family [Acinetobacter baumannii Naval-17]
gi|398328334|gb|EJN44461.1| membrane protein [Acinetobacter baumannii AC12]
gi|404558574|gb|EKA63855.1| peptidase, S54 family [Acinetobacter baumannii IS-143]
gi|404668720|gb|EKB36629.1| hypothetical protein W9K_01882 [Acinetobacter baumannii Ab33333]
gi|404669086|gb|EKB36993.1| hypothetical protein W9G_01987 [Acinetobacter baumannii Ab11111]
gi|404675042|gb|EKB42767.1| hypothetical protein W9M_00323 [Acinetobacter baumannii Ab44444]
gi|407193596|gb|EKE64752.1| hypothetical protein B825_05956 [Acinetobacter baumannii ZWS1122]
gi|407193880|gb|EKE65029.1| hypothetical protein B837_05666 [Acinetobacter baumannii ZWS1219]
gi|407900538|gb|AFU37369.1| hypothetical protein M3Q_1277 [Acinetobacter baumannii TYTH-1]
gi|408504971|gb|EKK06701.1| peptidase, S54 family [Acinetobacter baumannii Naval-72]
gi|408508091|gb|EKK09778.1| peptidase, S54 family [Acinetobacter baumannii OIFC0162]
gi|408695212|gb|EKL40768.1| peptidase, S54 family [Acinetobacter baumannii OIFC180]
gi|409986358|gb|EKO42552.1| membrane protein [Acinetobacter baumannii AC30]
gi|410400086|gb|EKP52266.1| peptidase, S54 family [Acinetobacter baumannii Naval-2]
gi|425492758|gb|EKU59010.1| peptidase, S54 family [Acinetobacter baumannii WC-348]
gi|425499025|gb|EKU65091.1| peptidase, S54 family [Acinetobacter baumannii Naval-113]
gi|444778162|gb|ELX02181.1| peptidase, S54 family [Acinetobacter baumannii OIFC338]
gi|444778267|gb|ELX02285.1| peptidase, S54 family [Acinetobacter baumannii OIFC047]
gi|444778950|gb|ELX02945.1| peptidase, S54 family [Acinetobacter baumannii Naval-78]
Length = 205
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNS+I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNSHINHSAHLWGAAYGVIVTILIEPR 191
>gi|262368794|ref|ZP_06062123.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|381197586|ref|ZP_09904926.1| hypothetical protein AlwoW_10013 [Acinetobacter lwoffii WJ10621]
gi|262316472|gb|EEY97510.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 205
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL-YMAGAIGGSVFYLV 221
G+ IT F H D H++ NM L+FFG SI + +Y L ++ +GG +F
Sbjct: 43 GQYDRFITHGFIHADGMHLLFNMFTLFFFG-SIIESFYRQYFFDLGFVLFYLGGLIF--- 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K + + R +LGASGAV+A++ + P L F FFIPVPA +
Sbjct: 99 --AILPSYLKHK-----NDVRWASLGASGAVSAVLFAYVLFEPW-KLIFVFFIPVPAIIF 150
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V + + +GNSNI+ SAHL GAA +
Sbjct: 151 AVLYVAYSIWSGKKGNSNINHSAHLWGAAYGVI 183
>gi|295133592|ref|YP_003584268.1| rhomboid family protein [Zunongwangia profunda SM-A87]
gi|294981607|gb|ADF52072.1| rhomboid family protein [Zunongwangia profunda SM-A87]
Length = 215
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 145 DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
DP+F + + ++ + SG+ + ++TS F H++ H+ NM+ LYFF ++ LG
Sbjct: 25 DPEFF-HKYKFNIADIKSGKKYQILTSGFLHVNHAHLFVNMLTLYFFADAVLHYLGTTGF 83
Query: 205 LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
+ +Y+ + G++ L +H D A+GASGAV I+ I LNP
Sbjct: 84 IVVYLVSLVLGNLLSLYFHK--------------DEWNYTAVGASGAVMGILYSAILLNP 129
Query: 265 KATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
L F IP+PA+L G+ + + + +I AH GGA
Sbjct: 130 DMMLGLFFIIPIPAYLFGIGYLLYTIYGMKSRRDSIGHDAHFGGAV 175
>gi|6321538|ref|NP_011615.1| Pcp1p [Saccharomyces cerevisiae S288c]
gi|1723691|sp|P53259.1|PCP1_YEAST RecName: Full=Rhomboid protein 1, mitochondrial; AltName:
Full=Mitochondrial distribution and morphology protein
37; AltName: Full=Processing of cytochrome c peroxidase
protein 1; Flags: Precursor
gi|1323155|emb|CAA97104.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151943378|gb|EDN61691.1| rhomboid protease [Saccharomyces cerevisiae YJM789]
gi|190406879|gb|EDV10146.1| rhomboid protease [Saccharomyces cerevisiae RM11-1a]
gi|256269416|gb|EEU04713.1| Pcp1p [Saccharomyces cerevisiae JAY291]
gi|259146603|emb|CAY79860.1| Pcp1p [Saccharomyces cerevisiae EC1118]
gi|285812294|tpg|DAA08194.1| TPA: Pcp1p [Saccharomyces cerevisiae S288c]
gi|323348615|gb|EGA82859.1| Pcp1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354923|gb|EGA86755.1| Pcp1p [Saccharomyces cerevisiae VL3]
Length = 346
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 311 AAHLGGSMMGVL 322
>gi|262279920|ref|ZP_06057705.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260271|gb|EEY79004.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 205
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHR---NDTNWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNS+I+ SAHL GAA L I +
Sbjct: 152 VLYVAYSIWAGKRGNSHINHSAHLWGAAYGVLVTILIEPK 191
>gi|401625685|gb|EJS43683.1| pcp1p [Saccharomyces arboricola H-6]
Length = 346
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + + +S + ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDHISSKF-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ TLG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLALWSFGTSLSVTLGASNFFSLYMNSAIAGSLFSLWYPKIARLA-------IVGPS--- 252
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 -LGASGALFGVLGSFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 311 AAHLGGSMMGVL 322
>gi|392299357|gb|EIW10451.1| Pcp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 346
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 311 AAHLGGSMMGVL 322
>gi|417554185|ref|ZP_12205254.1| peptidase, S54 family [Acinetobacter baumannii Naval-81]
gi|417561557|ref|ZP_12212436.1| peptidase, S54 family [Acinetobacter baumannii OIFC137]
gi|421200784|ref|ZP_15657943.1| peptidase, S54 family [Acinetobacter baumannii OIFC109]
gi|421456550|ref|ZP_15905892.1| peptidase, S54 family [Acinetobacter baumannii IS-123]
gi|421635442|ref|ZP_16076044.1| peptidase, S54 family [Acinetobacter baumannii Naval-13]
gi|421805072|ref|ZP_16240966.1| peptidase, S54 family [Acinetobacter baumannii WC-A-694]
gi|395524139|gb|EJG12228.1| peptidase, S54 family [Acinetobacter baumannii OIFC137]
gi|395562816|gb|EJG24469.1| peptidase, S54 family [Acinetobacter baumannii OIFC109]
gi|400210978|gb|EJO41942.1| peptidase, S54 family [Acinetobacter baumannii IS-123]
gi|400390602|gb|EJP57649.1| peptidase, S54 family [Acinetobacter baumannii Naval-81]
gi|408702261|gb|EKL47674.1| peptidase, S54 family [Acinetobacter baumannii Naval-13]
gi|410410122|gb|EKP62042.1| peptidase, S54 family [Acinetobacter baumannii WC-A-694]
Length = 205
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNS+I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNSHINHSAHLWGAAYGVIITILIEPR 191
>gi|448122960|ref|XP_004204574.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|448125226|ref|XP_004205132.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|358249765|emb|CCE72831.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|358350113|emb|CCE73392.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VYG+I N AVF +WR+ +F+ +S D S +++ SAFSH H+ N
Sbjct: 139 IVYGIIAINCAVFGMWRLPQFSRFLMRYGLLSKDGMYSA--WSMLGSAFSHQSFSHLFVN 196
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY----HAFLAMSSKRQGMWVVDP 240
M L+ FG SI +G L L++ A+ S +VY +F+ SS
Sbjct: 197 MFVLHSFGTSICAMIGAANFLTLFLNSAVVSSFVSIVYSVLTRSFIGASS---------- 246
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLRIIEG 296
LGASG+V + +L PKA L F FFIPVP F LG + G
Sbjct: 247 -----LGASGSVFGVFGCFSYLFPKAPLAF-FFIPVPGGSWIFFLGTLAYNFAGSALRWG 300
Query: 297 NSNISGSAHLGGAAVA-ALAWARIRRR 322
+ +AHLGG+ V W ++R
Sbjct: 301 RYDF--AAHLGGSMVGIGYGWWLTKKR 325
>gi|349578313|dbj|GAA23479.1| K7_Pcp1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 346
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 311 AAHLGGSMMGVL 322
>gi|145239077|ref|XP_001392185.1| rhomboid family protein [Aspergillus niger CBS 513.88]
gi|134076688|emb|CAK45219.1| unnamed protein product [Aspergillus niger]
Length = 581
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I NTA+F LW + N + IS+ + + L+ + FS
Sbjct: 358 RLWPNIPRSAATVGTIIGINTAIFALWWFPPCWRLFNRYLISIPANPNPPVR-LLGNIFS 416
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 417 HQYPKHLISNMLFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA------- 469
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVFLI 286
W V ALGASGA++ ++ LN L F FF+P VP + + ++
Sbjct: 470 QWTVS-----ALGASGALSGVVAAYCTLNANENLQF-FFLPEEWKKMLSVPGWTIITTMV 523
Query: 287 GKD---MLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
+ ++R + G + AH+GG + ++WA R
Sbjct: 524 ALESISLVRRLRGPHKLDHWAHMGG-YLTGISWALCR 559
>gi|88803472|ref|ZP_01118998.1| putative integral membrane protein [Polaribacter irgensii 23-P]
gi|88781038|gb|EAR12217.1| putative integral membrane protein [Polaribacter irgensii 23-P]
Length = 218
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++ V +IIAN V M + D F+ + + +SG L+TS F H+D H+
Sbjct: 6 NQAVLLIIIANVLVSM-KGLKDSAFL-EKYKFQIGRIISGEKIRLLTSGFLHVDYMHLGF 63
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM LY FG + +G L +Y + G+++ L YH D
Sbjct: 64 NMYALYLFGDIVSGMMGIFNFLIIYFISLLAGNLYTLKYHR--------------DEPYY 109
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
A+GASGAV+ I+ I L P +LY F IP+P ++ G+ + + + + NI
Sbjct: 110 SAVGASGAVSGIVYAAILLYPGMSLYLFFIPIPIPGYVFGLGYLLYSIYGMKKQIGNIGH 169
Query: 303 SAHLGGA 309
SAHLGGA
Sbjct: 170 SAHLGGA 176
>gi|436835582|ref|YP_007320798.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384066995|emb|CCH00205.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 207
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 8/158 (5%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ + L+TS F H D+ H++ NM+ YFFG ++ E + G +GG V + Y
Sbjct: 39 GQYYRLVTSGFLHADLSHLLFNMLSFYFFGGTV------EAIFSQLFPG-VGGIVLVVFY 91
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLL 281
+ +S + D SR +LGASG V+AI+ I + P +YF F +P+P F+
Sbjct: 92 LIAIIISDIPTLIKHKDNSRYNSLGASGGVSAIIFATILVFPLTGIYFFFIPVPIPGFIF 151
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
+ +G +G+S I+ AHL GA L A +
Sbjct: 152 AILYLGYSYYAARQGSSGINHDAHLYGALFGILFMAVV 189
>gi|169633931|ref|YP_001707667.1| hypothetical protein ABSDF2423 [Acinetobacter baumannii SDF]
gi|239502991|ref|ZP_04662301.1| hypothetical protein AbauAB_11834 [Acinetobacter baumannii AB900]
gi|260555912|ref|ZP_05828132.1| rhomboid family protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|417547145|ref|ZP_12198231.1| peptidase, S54 family [Acinetobacter baumannii OIFC032]
gi|417551124|ref|ZP_12202202.1| peptidase, S54 family [Acinetobacter baumannii Naval-18]
gi|417564898|ref|ZP_12215772.1| peptidase, S54 family [Acinetobacter baumannii OIFC143]
gi|421625313|ref|ZP_16066166.1| peptidase, S54 family [Acinetobacter baumannii OIFC098]
gi|421661516|ref|ZP_16101692.1| peptidase, S54 family [Acinetobacter baumannii OIFC110]
gi|421667017|ref|ZP_16107099.1| peptidase, S54 family [Acinetobacter baumannii OIFC087]
gi|421669836|ref|ZP_16109849.1| peptidase, S54 family [Acinetobacter baumannii OIFC099]
gi|421675119|ref|ZP_16115045.1| peptidase, S54 family [Acinetobacter baumannii OIFC065]
gi|421679846|ref|ZP_16119714.1| peptidase, S54 family [Acinetobacter baumannii OIFC111]
gi|421690857|ref|ZP_16130523.1| peptidase, S54 family [Acinetobacter baumannii IS-116]
gi|421786401|ref|ZP_16222804.1| peptidase, S54 family [Acinetobacter baumannii Naval-82]
gi|421807754|ref|ZP_16243614.1| peptidase, S54 family [Acinetobacter baumannii OIFC035]
gi|445454556|ref|ZP_21445478.1| peptidase, S54 family [Acinetobacter baumannii WC-A-92]
gi|445491432|ref|ZP_21459747.1| peptidase, S54 family [Acinetobacter baumannii AA-014]
gi|169152723|emb|CAP01734.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
gi|193076707|gb|ABO11410.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|260410823|gb|EEX04121.1| rhomboid family protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|395556654|gb|EJG22655.1| peptidase, S54 family [Acinetobacter baumannii OIFC143]
gi|400385033|gb|EJP43711.1| peptidase, S54 family [Acinetobacter baumannii OIFC032]
gi|400385579|gb|EJP48654.1| peptidase, S54 family [Acinetobacter baumannii Naval-18]
gi|404563754|gb|EKA68954.1| peptidase, S54 family [Acinetobacter baumannii IS-116]
gi|408698982|gb|EKL44467.1| peptidase, S54 family [Acinetobacter baumannii OIFC098]
gi|408715928|gb|EKL61050.1| peptidase, S54 family [Acinetobacter baumannii OIFC110]
gi|410383134|gb|EKP35668.1| peptidase, S54 family [Acinetobacter baumannii OIFC065]
gi|410386489|gb|EKP38960.1| peptidase, S54 family [Acinetobacter baumannii OIFC087]
gi|410387305|gb|EKP39761.1| peptidase, S54 family [Acinetobacter baumannii OIFC099]
gi|410390665|gb|EKP43048.1| peptidase, S54 family [Acinetobacter baumannii OIFC111]
gi|410412879|gb|EKP64727.1| peptidase, S54 family [Acinetobacter baumannii Naval-82]
gi|410416735|gb|EKP68507.1| peptidase, S54 family [Acinetobacter baumannii OIFC035]
gi|444752554|gb|ELW77238.1| peptidase, S54 family [Acinetobacter baumannii WC-A-92]
gi|444764566|gb|ELW88879.1| peptidase, S54 family [Acinetobacter baumannii AA-014]
gi|452954323|gb|EME59727.1| hypothetical protein G347_03455 [Acinetobacter baumannii MSP4-16]
Length = 205
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNTHINHSAHLWGAAYGVIVTILIEPR 191
>gi|363752139|ref|XP_003646286.1| hypothetical protein Ecym_4420 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889921|gb|AET39469.1| hypothetical protein Ecym_4420 [Eremothecium cymbalariae
DBVPG#7215]
Length = 337
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ + Y LI N AVF LW++ P+F + + D+ S +LI SAFSH + H
Sbjct: 134 THLPYALIGINCAVFGLWQL--PRFWLPLQRYALLQKDHIYSK--WSLIGSAFSHQEFWH 189
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
NM+ L+ FG S+ LGP LY+ AI GS+F L Y ++ ++ P
Sbjct: 190 FGMNMMCLWSFGTSLAVMLGPANFTSLYLNSAIAGSLFSLWYPKIARIA-------IMGP 242
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSN 299
S LGASGA+ + + +L P A + FF +PV A+ + L G +++ +
Sbjct: 243 S----LGASGALFGLFAVFSYLAPDAKIMLLFFPMPVGAWYTFLGLAGWNVVGCVFRWGM 298
Query: 300 ISGSAHLGGAAVAALAWARIRRR 322
+AH+GG+ + L I +R
Sbjct: 299 FDYAAHVGGSVMGVLYGWWISKR 321
>gi|260551204|ref|ZP_05825407.1| rhomboid family protein [Acinetobacter sp. RUH2624]
gi|424056422|ref|ZP_17793943.1| hypothetical protein W9I_02792 [Acinetobacter nosocomialis Ab22222]
gi|425740954|ref|ZP_18859113.1| peptidase, S54 family [Acinetobacter baumannii WC-487]
gi|260405809|gb|EEW99298.1| rhomboid family protein [Acinetobacter sp. RUH2624]
gi|407441462|gb|EKF47968.1| hypothetical protein W9I_02792 [Acinetobacter nosocomialis Ab22222]
gi|425493801|gb|EKU60025.1| peptidase, S54 family [Acinetobacter baumannii WC-487]
Length = 205
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNTHINHSAHLWGAAYGVIVTILIEPR 191
>gi|445401000|ref|ZP_21430301.1| peptidase, S54 family [Acinetobacter baumannii Naval-57]
gi|444783127|gb|ELX06989.1| peptidase, S54 family [Acinetobacter baumannii Naval-57]
Length = 205
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNTHINHSAHLWGAAYGVIVTILIEPR 191
>gi|289208543|ref|YP_003460609.1| rhomboid family protein [Thioalkalivibrio sp. K90mix]
gi|288944174|gb|ADC71873.1| Rhomboid family protein [Thioalkalivibrio sp. K90mix]
Length = 205
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
IIA T +W P+ + G LIT F H D H+ NMI L+F
Sbjct: 11 IIAGTVATSVWAWQRPRVL-ERMIYWPPAVARGEYWRLITHGFIHADGTHLAFNMITLFF 69
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAFLAMSSKRQGMWVVDPSRTPALGA 248
FGM++ R L PE G +G FYL + A L + + + +LGA
Sbjct: 70 FGMAMERVLVPE-------IGVLGFVAFYLAGIVLAILPTHLRHR-----NNRFYRSLGA 117
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
SGAV+A++ I L P + L F FFIP+PA + + + N++ SAHL G
Sbjct: 118 SGAVSAVLFAYILLQPWSML-FVFFIPMPAIVFAAAYVAYSFWAQRQARDNVNHSAHLWG 176
Query: 309 AA 310
A
Sbjct: 177 GA 178
>gi|389708989|ref|ZP_10186729.1| hypothetical protein HADU_07100 [Acinetobacter sp. HA]
gi|388610293|gb|EIM39419.1| hypothetical protein HADU_07100 [Acinetobacter sp. HA]
Length = 205
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ I+ F H D H++ NMI L+FFG SI + +YL L G +FYL
Sbjct: 43 GQYDRFISHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYLYDL------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ S Q + R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIAAIIPSYLQNK---NNPRWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V + + GNSNI+ SAHL GAA +
Sbjct: 152 VLYVAYSVWSGKRGNSNINHSAHLWGAAYGVI 183
>gi|126641028|ref|YP_001084012.1| hypothetical protein A1S_0978 [Acinetobacter baumannii ATCC 17978]
Length = 176
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 14 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 66
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 67 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 122
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL GAA + I R
Sbjct: 123 VLYVAYSIWAGKRGNTHINHSAHLWGAAYGVIVTILIEPR 162
>gi|418300399|ref|ZP_12912224.1| hypothetical protein ATCR1_22786 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533672|gb|EHH02996.1| hypothetical protein ATCR1_22786 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 257
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+IT AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++F+
Sbjct: 75 TVITYAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLACAIVGALFH------- 127
Query: 227 AMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLL 281
VV P S P +GASGAV+ ++ L+P+ ++ +P+PAF+
Sbjct: 128 ---------GVVSPTSEGPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIP 178
Query: 282 GVFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRG 323
IG+ L + G N+S AH+GG A+ +RRRG
Sbjct: 179 LALWIGQQFLMLALGLEENVSWGAHVGGIIAGAILVVFMRRRG 221
>gi|424793519|ref|ZP_18219625.1| putative rhomboid family membrane protein [Xanthomonas translucens
pv. graminis ART-Xtg29]
gi|422796603|gb|EKU25083.1| putative rhomboid family membrane protein [Xanthomonas translucens
pv. graminis ART-Xtg29]
Length = 211
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H D H++ NM+ LYFFG I R L++ + +FYL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIER------LMERLTGSLLTYPLFYLAALVVAI 101
Query: 228 MSSKRQGMWVVDPSRTP---ALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGV 283
+ S + + P +LGASGAV+A++ I L P +YF F IP+PA L +
Sbjct: 102 LPSYLKN------QKNPNYFSLGASGAVSAVLFAYILLAPWTGIYFFFIPIPIPAILYAL 155
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
F +G + G NI+ SAHL GAA +
Sbjct: 156 FYVGYSIWMDRRGGDNINHSAHLAGAAFGVM 186
>gi|126314472|ref|XP_001377876.1| PREDICTED: presenilin associated, rhomboid-like [Monodelphis
domestica]
Length = 378
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K +F + P++ FR R W + V G+I AN VF LWR+
Sbjct: 128 QSYFDGVKADWFDSITPQKE-GDFRKRVNKWWNTLTDGQRTVTGIIAANVFVFCLWRVPS 186
Query: 146 -PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT S + ++ S FSH + H+++NM L+ F SI LG E
Sbjct: 187 LQRSMIKYFTSSPAS--KALCSPMLLSTFSHFSLFHMMANMYVLWSFSTSIVSILGKEQF 244
Query: 205 LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
+ +Y++ V F++ SK V+ P+LGASGA+ ++ P
Sbjct: 245 VAVYLSAG--------VISTFVSYVSK-----VITGRFGPSLGASGAIMTVLAAVCTKIP 291
Query: 265 KATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 292 EGKLAI-IFLPMFTFTAGNALKAIIAMDTAGVILGWKFFDHAAHLGGA 338
>gi|353235265|emb|CCA67281.1| hypothetical protein PIIN_01114 [Piriformospora indica DSM 11827]
Length = 203
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 34/198 (17%)
Query: 126 VVYGLIIANTAVFMLWRIADP----------KFMANNFTISLDNFLSGRLHTLITSAFSH 175
+VYG+I N +VF+ + A K+MA NFT S N GR+ TL+TSAF+H
Sbjct: 8 LVYGIIGINISVFLCFYAAKSTFKRGDARSLKWMAENFTFSAGNIRQGRIWTLVTSAFAH 67
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
H++ N +GL+ + LG L +Y+AGA+G S + A+ + GM
Sbjct: 68 HSTIHLLMNTLGLWRL-RPDAQYLGSYSFLTVYLAGAVGSS----LASAYWNQNHPVHGM 122
Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGVFLIGKDMLRI 293
GASGA+NA+ + P++++ F IP+ ++ G+FL D+ R+
Sbjct: 123 -----------GASGAMNAVKSFMACMTPRSSVTL-FGIPMSLWVAEAGIFLY--DLYRV 168
Query: 294 IEGN---SNISGSAHLGG 308
G+ ++I H+GG
Sbjct: 169 ESGSRRLTSIGFEGHIGG 186
>gi|320164531|gb|EFW41430.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 451
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 123 SSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
S ++++G++ NT VF WRI A FM NNF L + SGR + SAFSH D H
Sbjct: 238 SVKLMWGIVGLNTLVFAAWRIPALLPFMYNNF---LSHPGSGRALPKLLSAFSHRDPVHF 294
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM LY FG + LG E + L++ A+G S+ +Y A +++R
Sbjct: 295 GINMFALYGFGQVSQQDLGSEQFVALFLTAAVGSSLASHLY----ANAARR--------- 341
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVFLIGKDMLRIIEGNSN 299
P+LGASGA+ I+ + ++P + F V PA+ D+L +I
Sbjct: 342 FVPSLGASGALLGIVASAVAVHPNLAVGIPFVPDVYFPAWQAFAATCTLDVLGLIFRWRM 401
Query: 300 ISGSAHLGGAAVAAL 314
+AHLGGA +
Sbjct: 402 FDHAAHLGGALIGGC 416
>gi|169796824|ref|YP_001714617.1| hypothetical protein ABAYE2814 [Acinetobacter baumannii AYE]
gi|213156784|ref|YP_002318445.1| rhomboid family protein [Acinetobacter baumannii AB0057]
gi|215484302|ref|YP_002326529.1| Rhomboid family protein [Acinetobacter baumannii AB307-0294]
gi|301346711|ref|ZP_07227452.1| Rhomboid family protein [Acinetobacter baumannii AB056]
gi|301511820|ref|ZP_07237057.1| Rhomboid family protein [Acinetobacter baumannii AB058]
gi|301594412|ref|ZP_07239420.1| Rhomboid family protein [Acinetobacter baumannii AB059]
gi|332853698|ref|ZP_08434928.1| peptidase, S54 family [Acinetobacter baumannii 6013150]
gi|332870877|ref|ZP_08439522.1| peptidase, S54 family [Acinetobacter baumannii 6013113]
gi|417571822|ref|ZP_12222676.1| peptidase, S54 family [Acinetobacter baumannii Canada BC-5]
gi|421620599|ref|ZP_16061531.1| peptidase, S54 family [Acinetobacter baumannii OIFC074]
gi|421643448|ref|ZP_16083942.1| peptidase, S54 family [Acinetobacter baumannii IS-235]
gi|421646421|ref|ZP_16086873.1| peptidase, S54 family [Acinetobacter baumannii IS-251]
gi|421658643|ref|ZP_16098874.1| peptidase, S54 family [Acinetobacter baumannii Naval-83]
gi|421700164|ref|ZP_16139681.1| peptidase, S54 family [Acinetobacter baumannii IS-58]
gi|421796132|ref|ZP_16232201.1| peptidase, S54 family [Acinetobacter baumannii Naval-21]
gi|421801716|ref|ZP_16237673.1| peptidase, S54 family [Acinetobacter baumannii Canada BC1]
gi|169149751|emb|CAM87642.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|213055944|gb|ACJ40846.1| rhomboid family protein [Acinetobacter baumannii AB0057]
gi|213987103|gb|ACJ57402.1| Rhomboid family protein [Acinetobacter baumannii AB307-0294]
gi|332728522|gb|EGJ59896.1| peptidase, S54 family [Acinetobacter baumannii 6013150]
gi|332731978|gb|EGJ63256.1| peptidase, S54 family [Acinetobacter baumannii 6013113]
gi|400207390|gb|EJO38360.1| peptidase, S54 family [Acinetobacter baumannii Canada BC-5]
gi|404570546|gb|EKA75619.1| peptidase, S54 family [Acinetobacter baumannii IS-58]
gi|408508131|gb|EKK09817.1| peptidase, S54 family [Acinetobacter baumannii IS-235]
gi|408517808|gb|EKK19346.1| peptidase, S54 family [Acinetobacter baumannii IS-251]
gi|408700286|gb|EKL45749.1| peptidase, S54 family [Acinetobacter baumannii OIFC074]
gi|408709339|gb|EKL54585.1| peptidase, S54 family [Acinetobacter baumannii Naval-83]
gi|410400328|gb|EKP52507.1| peptidase, S54 family [Acinetobacter baumannii Naval-21]
gi|410404973|gb|EKP57026.1| peptidase, S54 family [Acinetobacter baumannii Canada BC1]
Length = 205
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL GAA + I R
Sbjct: 152 VLYVAYSIWAGKRGNTHINHSAHLWGAAYGVIVTILIDPR 191
>gi|375133876|ref|YP_004994526.1| peptidase, S54 (rhomboid) family [Acinetobacter calcoaceticus
PHEA-2]
gi|424740759|ref|ZP_18169138.1| peptidase, S54 family [Acinetobacter baumannii WC-141]
gi|427424515|ref|ZP_18914638.1| peptidase, S54 family [Acinetobacter baumannii WC-136]
gi|325121321|gb|ADY80844.1| peptidase, S54 (rhomboid) family [Acinetobacter calcoaceticus
PHEA-2]
gi|422945550|gb|EKU40502.1| peptidase, S54 family [Acinetobacter baumannii WC-141]
gi|425698815|gb|EKU68448.1| peptidase, S54 family [Acinetobacter baumannii WC-136]
Length = 205
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G++ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQIDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + GNS+I+ SAHL GAA
Sbjct: 152 ILYVAYSIWAGKRGNSHINHSAHLWGAA 179
>gi|299771123|ref|YP_003733149.1| membrane protein [Acinetobacter oleivorans DR1]
gi|298701211|gb|ADI91776.1| uncharacterized membrane protein [Acinetobacter oleivorans DR1]
Length = 205
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G++ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQIDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + GNS+I+ SAHL GAA
Sbjct: 152 ILYVAYSIWAGKRGNSHINHSAHLWGAA 179
>gi|262372008|ref|ZP_06065287.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262312033|gb|EEY93118.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 205
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL-YMAGAIGGSVFYLV 221
G+ IT F H D H++ NMI L+FFG +I + E+ + ++ +GG +F
Sbjct: 43 GQFDRFITHGFVHADGTHLLFNMITLFFFG-NIIESFYREFFYDMGFVLFYLGGLIF--- 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K + + R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 99 --AILPSYLKHK-----NDVRWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAIIF 150
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + GN+NI+ SAHL GAA +
Sbjct: 151 AILYVAYSIWSGKRGNTNINHSAHLWGAAYGVIV 184
>gi|384099337|ref|ZP_10000423.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
gi|383832685|gb|EID72155.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
Length = 215
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ +S F H+D H++ NM+ LYFF + + LG + +Y+A I GS+F L +H
Sbjct: 46 MFSSGFLHVDTAHLLFNMLTLYFFANVVIQDLGAFKFILVYVASLIIGSLFSLFFHK--- 102
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
+ A+GASGAV I+ I L P +LY F IP+PA++ G+ +
Sbjct: 103 -----------NEYHYSAVGASGAVTGILYSAILLYPNMSLYLFFIPIPIPAYIFGIVYL 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
+ + NI +AH GGA
Sbjct: 152 LYSIYGMKSRIGNIGHTAHFGGAV 175
>gi|296224680|ref|XP_002758155.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Callithrix jacchus]
Length = 379
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKK-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 PK-FMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
K M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LKRTMTRYFT---SNPASKVLCSPMLLSTFSHFSLIHMAANMYVLWSFSSSIVNLLGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAMYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 MPEGRLAI-IFLPILTFTAGNALKAIIAMDTAGLILGWKVFDHAAHLGGA 339
>gi|359429423|ref|ZP_09220449.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
gi|358235273|dbj|GAB01988.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
Length = 205
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL-YMAGAIGGSVFYLV 221
G+ IT F H D H++ NMI L+FFG +I + ++ + ++ +GG +F
Sbjct: 43 GQFDRFITHGFVHADGTHLLFNMITLFFFG-NIIESFYRQFFYDMGFVLFYLGGLIF--- 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K + + R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 99 --AILPSYLKHK-----NDVRWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAIIF 150
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+ + + GNSNI+ SAHL GAA + + R
Sbjct: 151 AILYVAYSIWSGKRGNSNINHSAHLWGAAYGVVVTILLEPR 191
>gi|440731021|ref|ZP_20911068.1| hypothetical protein A989_06693 [Xanthomonas translucens DAR61454]
gi|440375422|gb|ELQ12131.1| hypothetical protein A989_06693 [Xanthomonas translucens DAR61454]
Length = 211
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H D H++ NM+ LYFFG I R L++ + +FYL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIER------LMERLTGSLLTYPLFYLAALVVAI 101
Query: 228 MSSKRQGMWVVDPSRTP---ALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGV 283
+ S + + P +LGASGAV+A++ I L P +YF F IP+PA L +
Sbjct: 102 LPSYLKN------QKNPNYFSLGASGAVSAVLFAYILLAPWTGIYFFFIPIPIPAILYAL 155
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
F +G + G NI+ SAHL GAA +
Sbjct: 156 FYVGYSIWMDRRGGDNINHSAHLAGAAFGVM 186
>gi|433679790|ref|ZP_20511478.1| hypothetical protein BN444_03821 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815094|emb|CCP42093.1| hypothetical protein BN444_03821 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 211
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H D H++ NM+ LYFFG I R L++ + +FYL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIER------LMERLTGSLLTYPLFYLAALVVAI 101
Query: 228 MSSKRQGMWVVDPSRTP---ALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGV 283
+ S + + P +LGASGAV+A++ I L P +YF F IP+PA L +
Sbjct: 102 LPSYLKN------QKNPNYFSLGASGAVSAVLFAYILLAPWTGIYFFFIPIPIPAILYAL 155
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
F +G + G NI+ SAHL GAA +
Sbjct: 156 FYVGYSIWMDRRGGDNINHSAHLAGAAFGVM 186
>gi|50084251|ref|YP_045761.1| hypothetical protein ACIAD1051 [Acinetobacter sp. ADP1]
gi|49530227|emb|CAG67939.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter sp. ADP1]
Length = 207
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + ++ L G +FYL
Sbjct: 45 GQYDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQFFYDL------GFVLFYLGG 97
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 98 LIFAILPSYFQHK---NDTHWASLGASGAVSAVLFAYILFEPW-KLIFVFFIPVPAIIFA 153
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAA 310
V + + GNSN++ SAHL GAA
Sbjct: 154 VLYVAYSIWSGKRGNSNVNHSAHLWGAA 181
>gi|350629377|gb|EHA17750.1| hypothetical protein ASPNIDRAFT_38635 [Aspergillus niger ATCC 1015]
Length = 503
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I NTA+F LW + N + IS+ + + L+ + FS
Sbjct: 280 RLWPNIPRSAATVGTIIGINTAIFALWWFPPCWRLFNRYLISIPANPNPPVR-LLGNIFS 338
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 339 HQYPKHLISNMLFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA------- 391
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVFLI 286
W V ALGASGA++ ++ LN L F FF+P VP + + ++
Sbjct: 392 QWTVS-----ALGASGALSGVVAAYCTLNANENLQF-FFLPEEWKKMLSVPGWTIITTMV 445
Query: 287 GKD---MLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
+ ++R + G + AH+GG + ++WA R
Sbjct: 446 ALESISLVRRLRGPHKLDHWAHMGG-YLTGISWALCR 481
>gi|399928108|ref|ZP_10785466.1| rhomboid family protein [Myroides injenensis M09-0166]
Length = 215
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG ++ +++S F H+D H + NM+ LYFFG + +GP Y L +Y I G++ +
Sbjct: 41 SGEIYRIVSSGFLHVDWMHFMFNMLTLYFFGDLVLYAVGPIYFLLIYFVSMIVGNM--IT 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
Y + + + R A+GASGA+ I+ I +NP L F IP+P+++
Sbjct: 99 YQFYQNVPNYR------------AVGASGAIMGILYASIMMNPDMMLGVFFIIPMPSYVF 146
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGA 309
+ + + + + + I SAH+GGA
Sbjct: 147 AILYLLYSVYGMRKQSDGIGHSAHIGGA 174
>gi|169618004|ref|XP_001802416.1| hypothetical protein SNOG_12187 [Phaeosphaeria nodorum SN15]
gi|111059479|gb|EAT80599.1| hypothetical protein SNOG_12187 [Phaeosphaeria nodorum SN15]
Length = 276
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYL 204
KFM N D + HTL+TS F+H ++ H+ +NM Y+ G + + P L
Sbjct: 101 KFMRNMSCNLTDVLHNNAYHTLLTSTFTHFNLFHLAANMFTTYYLGQFLCYAPVITPGRL 160
Query: 205 LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
L + + + GSV YL + +L+ +K VD R +G SGA+ ++ + L P
Sbjct: 161 LTIAIGAGLTGSVGYL-WQRYLSTGAKG-----VDYRR--GVGFSGALMGVISVAACLAP 212
Query: 265 KATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
A + +PVP + L V D + + NS I+ S HLGG A LA+ +R RG
Sbjct: 213 SAKVQLYGIVPVPLWALVVGYAAYDGYYLNDNNSRIAHSGHLGGLAF-GLAYYVLRLRGL 271
>gi|417860785|ref|ZP_12505840.1| hypothetical protein Agau_L100167 [Agrobacterium tumefaciens F2]
gi|338821189|gb|EGP55158.1| hypothetical protein Agau_L100167 [Agrobacterium tumefaciens F2]
Length = 257
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVVNVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVMT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFVAPTS 134
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLI 286
+ P +GASGAV+ ++ L+PK ++ F +P+PAF+ I
Sbjct: 135 E-----------GPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPLALWI 183
Query: 287 GKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR 321
G+ L + G N+S AH+GG A+ +RR
Sbjct: 184 GQQFLMLALGLEENVSWGAHVGGILAGAIMVIFMRR 219
>gi|328868749|gb|EGG17127.1| hypothetical protein DFA_08109 [Dictyostelium fasciculatum]
Length = 188
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NFT+S N L R +TL+T+AFSH D+ H+ SNM L FG + LG + LY
Sbjct: 1 MLENFTLSPRN-LEERPYTLLTAAFSHKDLGHLCSNMYSLNAFGPLMINALGTPLFVSLY 59
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
A+ S+ YLV L + ++ W + + LGASGA++ +++ L PK T+
Sbjct: 60 FGAAVFSSLVYLV----LEKIAVQRDRWRRNIAY--GLGASGAISGMIVAFATLWPKGTI 113
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEGNS---NISGSAHLGGAAVAALAWARIRRRGF 324
F +PV A+L + + + + + SAHLGGA L + +R F
Sbjct: 114 IFLGIVPVSAWLYVAGYLAYEAYKEYNRDQRTYKVGHSAHLGGALYGGLFYLFLRNYHF 172
>gi|50307513|ref|XP_453736.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642870|emb|CAH00832.1| KLLA0D15224p [Kluyveromyces lactis]
Length = 343
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMA--NNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+ + Y +I N AVF LW++ P+F + + + + + +L+ SAFSH + H+
Sbjct: 139 THLPYAIIGINLAVFGLWQL--PRFWGPLQRYALLQKDHIYSKW-SLLGSAFSHQEFWHL 195
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NMI L+ FG S+ LGP LY+ AI GS+F L Y F ++
Sbjct: 196 GMNMICLFSFGTSLVTMLGPGNFTSLYLNSAIAGSLFSLWYPRFAKIA-----------M 244
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNSN 299
P+LGASGA+ + +L P A + F F PVP A+ + L+ +++ +
Sbjct: 245 MGPSLGASGALFGLFGCFSYLIPNAKMMF-FIFPVPFGAWFTFLGLVTWNVVGCALRWGS 303
Query: 300 ISGSAHLGGAAVAAL 314
+AHLGG+A+ L
Sbjct: 304 FDYAAHLGGSAMGVL 318
>gi|381189363|ref|ZP_09896911.1| putative Rhomboid family protein [Flavobacterium frigoris PS1]
gi|379648572|gb|EIA07159.1| putative Rhomboid family protein [Flavobacterium frigoris PS1]
Length = 212
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +++S F H D+ H+ NM LYFF + LG + +Y I GS+ +V
Sbjct: 38 SGEQIRILSSGFLHADIAHLAFNMFTLYFFAPVVIDYLGEFLFVVVYFGSLIFGSLLTIV 97
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+H D A+GASGAV ++ I L P L F IP+PA+L
Sbjct: 98 FHK--------------DDYNYRAIGASGAVTGVLYSAILLRPDMMLGIFFIIPMPAYLF 143
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + + N NI +AH GGA
Sbjct: 144 GILYLLYSIYGMKAKNDNIGHTAHFGGA 171
>gi|323309049|gb|EGA62278.1| Pcp1p [Saccharomyces cerevisiae FostersO]
gi|323333532|gb|EGA74926.1| Pcp1p [Saccharomyces cerevisiae AWRI796]
Length = 237
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 35 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 93
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y K + +V PS
Sbjct: 94 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY-------PKLARLAIVGPS--- 143
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 144 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 201
Query: 303 SAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 202 AAHLGGSMMGVL 213
>gi|406039674|ref|ZP_11047029.1| hypothetical protein AursD1_07617 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 205
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL-YMAGAIGGSVFYLV 221
G+ IT F H D H++ NMI L+FFG S+ + ++ L ++ +GG +F
Sbjct: 43 GQYDRFITHGFVHADGTHLLFNMITLFFFG-SVIESFYRQFFYDLGFVLFYLGGLIF--- 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K + + + +LGASGAV+A++ I P L FFIPVPA +
Sbjct: 99 --AILPSYLKHK-----NDTNWASLGASGAVSAVLFAYILFEPW-KLILVFFIPVPAIIF 150
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V +G + GNSNI+ SAHL GAA +
Sbjct: 151 AVLYVGYSVWSGKRGNSNINHSAHLWGAAYGVV 183
>gi|445439305|ref|ZP_21441642.1| peptidase, S54 family [Acinetobacter baumannii OIFC021]
gi|444752259|gb|ELW76948.1| peptidase, S54 family [Acinetobacter baumannii OIFC021]
Length = 205
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQFDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPW-KLIFVFFIPVPAIIFA 151
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GN++I+ SAHL G A + I R
Sbjct: 152 VLYVAYSIWAGKRGNTHINHSAHLWGVAYGVIVTILIEPR 191
>gi|323451184|gb|EGB07062.1| hypothetical protein AURANDRAFT_15696, partial [Aureococcus
anophagefferens]
Length = 111
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTL+TSAFSH D H++ NM+ L+FFG + +G + L +Y + + L +A
Sbjct: 2 HTLVTSAFSHSDGWHLLGNMVTLFFFGPEVVGAIGARHFLAVYFGAGLTANCAQLAANAL 61
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVP 277
S+R W R LGASGAVNA + I L+P + + F F+P+P
Sbjct: 62 --EDSRRHAYWKRPSPRC--LGASGAVNAAVAHSILLSPWRLIVIFAEFLPIP 110
>gi|114799025|ref|YP_759062.1| S54 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114739199|gb|ABI77324.1| peptidase, S54 (rhomboid) family [Hyphomonas neptunium ATCC 15444]
Length = 204
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G H LI+S F H++ H+ NM GLY FG I LG L +Y+A IGGSV+
Sbjct: 45 GEWHRLISSGFLHVNGPHLFLNMYGLYMFGPVIEHVLGGVNFLIIYLASLIGGSVWAY-- 102
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
W D A GASGA++ I+L + P + L F F IP+ + G
Sbjct: 103 ------------WWNRDNPDYRAAGASGALSGIILAFCMIAPFSMLLFLFIIPMWGIVFG 150
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGA 309
V + + N I AHLGGA
Sbjct: 151 VGFVVLSYVLSQRANRIIGHEAHLGGA 177
>gi|383316417|ref|YP_005377259.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043521|gb|AFC85577.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 205
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 11/153 (7%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S + L+T H DV+H+ NM+ L+FFG R L P + + + GA G ++FY+
Sbjct: 38 SREYYRLVTYGLVHADVQHVFFNMLTLFFFG----RALEPFFGMIM---GATGFALFYIG 90
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+ S Q + R LGASGAV+A+M I L P + + F FIP+PA +
Sbjct: 91 ALVVSVLPSYLQNR---NNPRYRCLGASGAVSAVMFAFILLQPWSKI-FVLFIPLPAIMY 146
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V + ++ +G +++ AHL GAA L
Sbjct: 147 AVLYVAYSVMMSKQGGDDVNHGAHLWGAAYGVL 179
>gi|423135201|ref|ZP_17122847.1| hypothetical protein HMPREF9715_02622 [Myroides odoratimimus CIP
101113]
gi|371643282|gb|EHO08838.1| hypothetical protein HMPREF9715_02622 [Myroides odoratimimus CIP
101113]
Length = 216
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + ++ G + ITS F H+D H NM+ LYFF I + G Y L +Y+A
Sbjct: 29 NQYCFDINQINRGERYRFITSGFLHVDWMHFAFNMLTLYFFADIIIQVSGVLYFLIVYVA 88
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+ G++ L Y + R A+GASGA+ ++ I LNP +LY
Sbjct: 89 SLLVGNI--LTYQFYKNQPHYR------------AVGASGAIMGVLYASIMLNPSMSLYM 134
Query: 271 DFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
F IP+PA++ V + + + + N I +AH+GGA
Sbjct: 135 FFIPIPIPAYIFAVGYLLYSLYGMKKNNDGIGHTAHIGGA 174
>gi|376316492|emb|CCF99882.1| Peptidase S54 [uncultured Flavobacteriia bacterium]
Length = 216
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
IIA + L D F + ++ G +I+S F H+D H++ NM+ LYF
Sbjct: 11 IIAANVIISLKGFKDFSFF-EKYKFNIGGIRRGEQFRMISSGFLHLDFSHLLFNMLTLYF 69
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASG 250
F + ++G E + +Y+A + G++ +H + A+GASG
Sbjct: 70 FADVVISSIGYEKFILIYLASLLVGNLLSFYFHK--------------NEYNYSAIGASG 115
Query: 251 AVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
AV+ I+ I PK +LY F IP+PA++ G+ + + + + NI AH GGA
Sbjct: 116 AVSGILYSAILFYPKMSLYLFFIPIPIPAWVFGILYLLYSIYGMKKSLGNIGHDAHFGGA 175
>gi|150024952|ref|YP_001295778.1| rhomboid family protein [Flavobacterium psychrophilum JIP02/86]
gi|149771493|emb|CAL42962.1| Rhomboid family protein [Flavobacterium psychrophilum JIP02/86]
Length = 213
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 16/186 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
LIIA+ +F D F N + + +G + +SAF H D H+ NM L+
Sbjct: 7 LIIASNLIFSYKGFTDISFFRKN-EFHIGSIRAGEQSRMFSSAFLHADWGHLFFNMFTLF 65
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
F + LG + L +Y++ GS+ L +H + A+GAS
Sbjct: 66 MFAPIVINNLGNIFFLVIYLSSLFAGSLLTLYFHK--------------NDYGYRAIGAS 111
Query: 250 GAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
GAV I+ I L P+ +LY F IP+PA++ G+ + + + N NI +AH GG
Sbjct: 112 GAVTGILYSAILLQPEMSLYLYFIPIPIPAYIFGIGYLLYSIYGMKAKNDNIGHTAHFGG 171
Query: 309 AAVAAL 314
A L
Sbjct: 172 AIAGYL 177
>gi|335037404|ref|ZP_08530710.1| hypothetical protein AGRO_4719 [Agrobacterium sp. ATCC 31749]
gi|333791069|gb|EGL62460.1| hypothetical protein AGRO_4719 [Agrobacterium sp. ATCC 31749]
Length = 257
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVINVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+ AI G++F H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLVCAIAGALF----HGFVAPTS 134
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLI 286
+ P +GASGAV+ ++ L+P+ ++ +P+PAF+ I
Sbjct: 135 E-----------GPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLALWI 183
Query: 287 GKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRG 323
G+ L + G N+S AH+GG A+ +RR G
Sbjct: 184 GQQFLMLALGLEENVSWGAHVGGILAGAIMVIFMRRPG 221
>gi|403270005|ref|XP_003926990.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 379
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKK-GDFRKEINKWWNHLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 PK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
K M FT S + + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LKRTMTRYFTSSPASKV--LCSPMLLSTFSHFSLIHMAANMYVLWSFSSSIVNLLGQEQF 245
Query: 205 LKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 246 MAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTKM 291
Query: 264 PKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 292 PEGRLAI-IFLPMLTFTAGNALKAIIAMDTAGLILGWKVFDHAAHLGGA 339
>gi|401841107|gb|EJT43635.1| PCP1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 346
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VY L+ N AVF LW++ KF+ + D+ S ++I SAFSH + H+
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWKFLQKYMLLQKDHITSK--FSIIGSAFSHQEFWHLGM 201
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ L+ FG+S+ LG LY+ AI GS+F L Y ++ +V PS
Sbjct: 202 NMLALWSFGVSLSTMLGASNFFSLYINSAIAGSMFSLWYPKLARLA-------IVGPS-- 252
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNIS 301
LGASGA+ ++ +L P A + F PVP FL + + +
Sbjct: 253 --LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFD 309
Query: 302 GSAHLGGA 309
+AHLGG+
Sbjct: 310 YAAHLGGS 317
>gi|228472109|ref|ZP_04056875.1| transmembrane rhomboid family protein [Capnocytophaga gingivalis
ATCC 33624]
gi|228276312|gb|EEK15036.1| transmembrane rhomboid family protein [Capnocytophaga gingivalis
ATCC 33624]
Length = 268
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFML-------WRIADPKFMANNFTISLD-NFLSGRLH 166
R W + S +VY LI++ ++L W+ DP F+ + F +S D + L +
Sbjct: 7 RIWGKH--SLSLVYILIVSYLCGYILPQLFAFLWQRTDP-FVRDLFALSQDFSQLLQQPW 63
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H H N I LYF G+ P+ L +Y+AG + G +F+++ +A
Sbjct: 64 TAITYSFFHASFIHCFFNAIMLYFVGILFMNLFTPKRFLGIYIAGVVAGGLFFMLTYAIF 123
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ + R+ LG S + A+++ P +Y VP ++LGV ++
Sbjct: 124 PVFAHREDY---------LLGGSAGIMAVLIFLTTYTPTLRIYLFGVWAVPLWVLGVLMV 174
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAAL 314
D+L I N+ AHLGGA V L
Sbjct: 175 ATDLLSIPISNAG-GHIAHLGGALVGIL 201
>gi|358370941|dbj|GAA87551.1| rhomboid family protein [Aspergillus kawachii IFO 4308]
Length = 581
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I N A+F LW + N + IS+ + L L+ + FS
Sbjct: 358 RLWPNIPRSAATVGTIIGINMAIFALWWFPPCWRLFNRYLISIPANPNPPLR-LLGNIFS 416
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 417 HQYPKHLISNMVFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA------- 469
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVFLI 286
W V ALGASGA++ ++ LN L F FF+P VP + + ++
Sbjct: 470 QWTVS-----ALGASGALSGVIAAYCTLNANENLQF-FFLPEEWKKMLSVPGWSIITTMV 523
Query: 287 GKD---MLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
+ ++R + G + AH+GG + ++WA R
Sbjct: 524 ALEAITLVRRLRGPHKLDHWAHMGG-YLTGISWALSR 559
>gi|365992034|ref|XP_003672845.1| hypothetical protein NDAI_0L01170 [Naumovozyma dairenensis CBS 421]
gi|410729917|ref|XP_003671137.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
gi|401779956|emb|CCD25894.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
Length = 362
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VY L+ N VF LW+I + F+ + N S ++I SAFSH + H+
Sbjct: 150 HLVYTLLGLNLFVFTLWQIPRNWHFLQKYMLLQKSNIQSN--WSIIGSAFSHQEFWHLGM 207
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ L+ FG ++ LG LYM AI GS+F L Y R G+ V+ PS
Sbjct: 208 NMLALWSFGTTLSTVLGASGFFSLYMNSAIMGSLFSLWYPRI-----ARMGLLVMGPS-- 260
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP-----AFLLGVFLIGKDMLRIIEGNS 298
LGASGA+ ++ +L P + + F PVP AFL V G +++ S
Sbjct: 261 --LGASGALFGVLGCFSYLFPTSKILL-FVFPVPGGAWVAFLASVVWNGAGC--VLKWGS 315
Query: 299 NISGSAHLGGAAVA-ALAW 316
+AHLGG+ + A W
Sbjct: 316 -FDYAAHLGGSLIGVAYGW 333
>gi|418405979|ref|ZP_12979299.1| hypothetical protein AT5A_02115 [Agrobacterium tumefaciens 5A]
gi|358007892|gb|EHK00215.1| hypothetical protein AT5A_02115 [Agrobacterium tumefaciens 5A]
Length = 257
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVVNVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+A S
Sbjct: 79 YAFLHLDFWHMAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFVAPMS 134
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLI 286
+ P +GASGAV+ ++ L+PK ++ F +P+PAF+ I
Sbjct: 135 E-----------GPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPLALWI 183
Query: 287 GKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR 321
G+ L + G N+S AH+GG A+ +RR
Sbjct: 184 GQQFLMLALGLEENVSWGAHVGGILAGAVMVIFMRR 219
>gi|402758443|ref|ZP_10860699.1| hypothetical protein ANCT7_12185 [Acinetobacter sp. NCTC 7422]
Length = 205
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 15/155 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG +I + ++ + G +FYL
Sbjct: 43 GQYDRFITHGFIHADGMHLLFNMITLFFFG-NIIESFYRQFFYDM------GFVLFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + D +R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIVAILPSYIKHR-----DDARWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + GNSNI+ SAHL GAA +
Sbjct: 150 FAILYVAYSIWSGQRGNSNINHSAHLWGAAYGVVV 184
>gi|432916076|ref|XP_004079280.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oryzias latipes]
Length = 383
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVS 183
+ V G+I NTAV WRI P N N +S R +I S+FSH + H+V+
Sbjct: 164 KTVTGIIAINTAVLCCWRI--PSMQRNMIKYFTSNPVSKTRCLPMILSSFSHYSIIHMVA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM L+ F I LG E L +Y+ AG I V Y+ A
Sbjct: 222 NMYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYICKTATGRFH------------- 268
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGKDMLRIIEGNSN 299
P+LGASGAV A++ P+A L F+P+ F G L+ D + +I G
Sbjct: 269 -PSLGASGAVMAVLAAVCAKVPEAKLGI-IFLPMFTFSAGNALKALVALDTVGLILGWRL 326
Query: 300 ISGSAHLGGA 309
+AHLGGA
Sbjct: 327 FDHAAHLGGA 336
>gi|148652124|ref|YP_001279217.1| rhomboid family protein [Psychrobacter sp. PRwf-1]
gi|148571208|gb|ABQ93267.1| Rhomboid family protein [Psychrobacter sp. PRwf-1]
Length = 206
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G + IT F H D H++ NM LYFFG ++ R + +GG F VY
Sbjct: 43 GEWYRFITHGFVHADSTHLLFNMFTLYFFGRAVER----------FFNQFLGGFGFVAVY 92
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ ++ + + R +LGASG V+AI+ I + P + LY +P+PA +
Sbjct: 93 LGAIIVAMIPSYLQHKNDPRYRSLGASGGVSAILFSFILMAPWSMLYLFAIVPIPAIVFA 152
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ +G + +GNSNI+ AHL G A +A
Sbjct: 153 IAYVGYSIYANNKGNSNINHLAHLWGGAFGVVA 185
>gi|423327868|ref|ZP_17305676.1| hypothetical protein HMPREF9711_01250 [Myroides odoratimimus CCUG
3837]
gi|404605869|gb|EKB05440.1| hypothetical protein HMPREF9711_01250 [Myroides odoratimimus CCUG
3837]
Length = 216
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + ++ G + ITS F H+D H NM+ LYFF I G Y L +Y+A
Sbjct: 29 NKYCFDINQINRGERYRFITSGFLHVDWMHFAFNMLTLYFFADIIIHVSGVLYFLIVYVA 88
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+ G++ L Y + R A+GASGA+ ++ I LNP +LY
Sbjct: 89 SLLVGNI--LTYQFYKNQPHYR------------AVGASGAIMGVLYASIMLNPSMSLYM 134
Query: 271 DFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
F IP+PA++ V + + + + N I +AH+GGA
Sbjct: 135 FFIPIPIPAYIFAVGYLLYSLYGMKKNNDGIGHTAHIGGA 174
>gi|381179391|ref|ZP_09888244.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
gi|380768686|gb|EIC02672.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
Length = 229
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLA 227
+T F H +++H+ NM+GL FFGM + R LG + + +Y+ G + G VY+A L
Sbjct: 65 LTYMFMHGNIQHLFFNMLGLLFFGMQVERALGSKEFVMMYLVVGVLSGLFSVGVYYA-LG 123
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
QGM+ +GASGA+ I+L + P++ ++ F IPVPA +L +
Sbjct: 124 AYMISQGMYPYT-YLVSLVGASGAIYGILLAYAVIFPRSRIFVWFVIPVPAPILVIAYAV 182
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ + G SN++ HL G A A L
Sbjct: 183 IEFVSQFTGGSNVAHQTHLAGFAFAFL 209
>gi|335420156|ref|ZP_08551197.1| hypothetical protein SSPSH_05704 [Salinisphaera shabanensis E1L3A]
gi|335420944|ref|ZP_08551976.1| hypothetical protein SSPSH_09685 [Salinisphaera shabanensis E1L3A]
gi|334893514|gb|EGM31727.1| hypothetical protein SSPSH_09685 [Salinisphaera shabanensis E1L3A]
gi|334895259|gb|EGM33435.1| hypothetical protein SSPSH_05704 [Salinisphaera shabanensis E1L3A]
Length = 201
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G L+T F H D +H++ NMI L+FFG I E + Y+ GA+G ++FYLV
Sbjct: 38 GEYQRLLTHGFIHADGQHLLFNMITLFFFGRVI------EGFFERYI-GAVGFALFYLVG 90
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ S Q + SR +LGASGAV+A++ + + P +T+Y FF P+PA +
Sbjct: 91 VVVAIVPSYLQHR---NDSRYRSLGASGAVSAVLFAYVLIAPWSTIYV-FFFPIPAIVYA 146
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ G+ +I+ SAHL GA L
Sbjct: 147 GLFTAYGLYAGRLGHDHINHSAHLWGAGYGVL 178
>gi|254580427|ref|XP_002496199.1| ZYRO0C12760p [Zygosaccharomyces rouxii]
gi|238939090|emb|CAR27266.1| ZYRO0C12760p [Zygosaccharomyces rouxii]
Length = 363
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
S +VYG++ N AVF LW+ + + N++ + +LI SAFSH + H+
Sbjct: 160 SHMVYGILGLNLAVFGLWQFPRYWRFLQRYMLLEKNYVYSK-WSLIGSAFSHQEFWHLGM 218
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ L+ FG S+ +G LYM AI GS+F L Y +K M
Sbjct: 219 NMLALWSFGTSLSYMIGASNFFSLYMNCAISGSLFSLWYPRI----AKIMLM-------G 267
Query: 244 PALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPAFL--LGVFLIGKDMLRIIEGNSNI 300
P+LGASGA+ +M FL P A L F F IP A++ LG + + G+ +
Sbjct: 268 PSLGASGALFGVMGCFSFLIPNAQILLFVFPIPGGAWIAFLGSTVWNAAGCFLRWGSFDY 327
Query: 301 SGSAHLGGAAVAAL 314
+AHLGG+ + L
Sbjct: 328 --AAHLGGSVIGVL 339
>gi|298209206|ref|YP_003717385.1| hypothetical protein CA2559_13218 [Croceibacter atlanticus
HTCC2559]
gi|83849133|gb|EAP87002.1| hypothetical protein CA2559_13218 [Croceibacter atlanticus
HTCC2559]
Length = 216
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ITS F H +V H++ NMI LYFF + LG + +Y+ GS+ +H
Sbjct: 47 MITSGFLHANVPHLIFNMITLYFFANVVINRLGTFSFVIIYLVSLALGSLLSYYFHK--- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
D A+GASGAV+ ++ I L P+ +LYF F IP+PA++ G+ +
Sbjct: 104 -----------DEYHYSAVGASGAVSGVIYASILLYPEMSLYFFFIPIPIPAYIFGIGYL 152
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA---VAALAWA 317
+ + + NI AH GGA + LA+A
Sbjct: 153 LYSIYGMKKQVGNIGHDAHFGGAVGGYIMTLAFA 186
>gi|444319963|ref|XP_004180638.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
gi|387513681|emb|CCH61119.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
Length = 353
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 125 EVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
E+VY L+ N A+F LW + KF+ + N S ++I S+FSH + H+
Sbjct: 151 ELVYTLLGINCAIFGLWHVPRCWKFLQKYMLLQKTNIQSK--WSIIGSSFSHQEFWHLGF 208
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGMWVVDPS 241
NM+ L+ FG+S+ LG LYM AI GS+F L Y A LA+
Sbjct: 209 NMLALWSFGISLANMLGVSNFFSLYMNSAIAGSLFSLWYPRIARLALMG----------- 257
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNIS 301
P+LGASGA+ ++ +L P A + F P+P FL M+ G
Sbjct: 258 --PSLGASGALFGVLGCFSYLFPSAKILL-FVFPIPGGAWVAFL--ASMVWNAAGCGLRW 312
Query: 302 GS----AHLGGAAVA-ALAWA 317
GS AHLGG+ + A W+
Sbjct: 313 GSLDYAAHLGGSLIGIAYGWS 333
>gi|242005576|ref|XP_002423640.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506800|gb|EEB10902.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 348
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 114/285 (40%), Gaps = 50/285 (17%)
Query: 55 RSQQSLSLKTHAFLFNPLLARRFFTSLLSSQ-----------LRKSFFDGKVLFFRAQFP 103
S QS SL FLF + + F Q L+K++ K++ +R +
Sbjct: 68 NSHQSFSLLWKPFLFTAIFSGASFAGTAIWQYENIRKKAFLLLQKNWITDKLVVYRQK-- 125
Query: 104 ERSFASFRYRWRS-----WLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISL 157
+Y+WR W R ++ + N+ VF+ W++ FM F S
Sbjct: 126 -------KYKWRQEFNKLWNRLTEGEKLFVPICFINSLVFLAWKVKKFQPFMIKYFCSS- 177
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
F +I S FSH H+ +NM LY F S LG E L LY+AGA+ S
Sbjct: 178 -PFNEAVCWPMILSTFSHYSFFHLAANMYVLYSFSTSGVEDLGKEQFLGLYLAGAVISSF 236
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
+Y + T ++GASGA+ A++ P A L I +P
Sbjct: 237 TSYLYK-------------ICRSQHTLSIGASGAIMAMVAYVCVKYPDAKLS---IILLP 280
Query: 278 AFLLGV-----FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317
+ ++ D+L I+ G + +AHLGG ++ L W
Sbjct: 281 WIVFSAASGIKIIMSLDVLGILRGWAYFDHAAHLGG-SLCGLGWC 324
>gi|389774391|ref|ZP_10192510.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
gi|388437990|gb|EIL94745.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
Length = 204
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+IAN AVF+L ++ + N L + L G + ++TSAF H + HI NMI LY
Sbjct: 12 LLIANVAVFLLQQVMGQVLLLNFALWPLGSGLFG-VWQIVTSAFMHGSLTHIAFNMIALY 70
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
FG +I RT G Y AI S+ L +W P LGAS
Sbjct: 71 MFGGTIERTFGARNFTLYYFVCAISASLLQLAV------------LWFFPGQVGPTLGAS 118
Query: 250 GAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEG-NSNISGSAHLG 307
GA+ ++L L P+ + F IP+PA+L ++ + G ++ AHLG
Sbjct: 119 GAIFGLLLAFGVLYPQEKVMLIFLPIPMPAWLFVSLYAAAELTMGVTGIEPGVAHFAHLG 178
Query: 308 G 308
G
Sbjct: 179 G 179
>gi|443685589|gb|ELT89143.1| hypothetical protein CAPTEDRAFT_153017 [Capitella teleta]
Length = 236
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIADPKFMANNFTISLD 158
++F +S FR R W E V G+I N AVF+LWR+A M F S
Sbjct: 5 SEFTAKS-GQFRNRMNFWFGSLQPGEKVAAGIIAVNVAVFLLWRVAPATVMYKWFAAS-- 61
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
+ + ++ S+FSH HI++NM L+ F + LGPE LL Y++ G V
Sbjct: 62 PYTTTSCWPMLFSSFSHYSPLHILANMCVLWSFAAPVSHRLGPEQLLAFYLS---AGVVS 118
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK---ATLYFDFFIP 275
+AF + + P+LGASGA+ ++ ++NP+ A L+ + IP
Sbjct: 119 VFGSYAFK----------IARMTAVPSLGASGAICGLIGYQCWVNPESQLAILFVNQIIP 168
>gi|58264256|ref|XP_569284.1| hypothetical protein CNB05400 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223934|gb|AAW41977.1| hypothetical protein CNB05400 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 330
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 42/240 (17%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQF---------PERSFASFRYRWRSWLRQYG 122
LL +R FTS +S +R ++F + P F R R + +
Sbjct: 85 LLTKRSFTSSTNSLIRSTYFPRGGRSGGNGYGSGGGGPQGPWAWFTRLRRR----IDRIP 140
Query: 123 SSEVVYGLIIANTAVFMLWRIA--------------DPKFMANNFTISLDNFLSGRLHTL 168
+ +VYGLI N AVF+LW+ A M++ + L + + R TL
Sbjct: 141 TMTLVYGLIGINGAVFLLWQYALSSASTSFPGECRCISPLMSHLEHVHLADETTSRW-TL 199
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+TSAFSH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 200 VTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF--- 256
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVFLI 286
R W + GASGA+ A + L P + + F IP+P ++ G+F +
Sbjct: 257 --SRHRWWGSE-------GASGAIYACLAYYGALFPNSQVLMFFVIPMPVWVAIGGIFAV 307
>gi|254574090|ref|XP_002494154.1| Mitochondrial serine protease [Komagataella pastoris GS115]
gi|238033953|emb|CAY71975.1| Mitochondrial serine protease [Komagataella pastoris GS115]
gi|328354027|emb|CCA40424.1| rhomboid-like protein [Komagataella pastoris CBS 7435]
Length = 312
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 14/201 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
S +VY LI N AVF LW+ + + + + L+ ++I SAFSH D HI
Sbjct: 113 SLLVYSLIGINAAVFALWKAPQYWRVLSRYGL-LEKDARFNKWSMIGSAFSHQDFWHIGM 171
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ LY FG ++ +G L +Y+ GA+ S+ L Y +SS
Sbjct: 172 NMLALYSFGTTVASYVGASNFLIMYLNGAVLSSLASLAYPVLAGVSSMGA---------- 221
Query: 244 PALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
+LGASGA+ AI+ +L P A L F F IP A++ + IG ++ + +
Sbjct: 222 -SLGASGALFAILGSFSYLFPYAKILLFVFPIPGGAWIAFLASIGWNVCGCVFRWGSFDY 280
Query: 303 SAHLGGAAVAAL-AWARIRRR 322
+AHLGG+ V W +RR
Sbjct: 281 AAHLGGSLVGIFYGWLIDQRR 301
>gi|332716382|ref|YP_004443848.1| hypothetical protein AGROH133_11895 [Agrobacterium sp. H13-3]
gi|325063067|gb|ADY66757.1| hypothetical protein AGROH133_11895 [Agrobacterium sp. H13-3]
Length = 257
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+
Sbjct: 75 TVVTYAFLHLDFWHMAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
A S+ P +GASGAV+ ++ L+PK ++ F +P+PAF+
Sbjct: 131 APMSE-----------GPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPL 179
Query: 283 VFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR 321
IG+ L + G N+S AH+GG A+ +RR
Sbjct: 180 ALWIGQQFLMLALGLEENVSWGAHVGGILAGAVMVIFMRR 219
>gi|260062828|ref|YP_003195908.1| hypothetical protein RB2501_14599 [Robiginitalea biformata
HTCC2501]
gi|88784396|gb|EAR15566.1| hypothetical protein RB2501_14599 [Robiginitalea biformata
HTCC2501]
Length = 215
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ ITS F H+DV H+ NM LYFF + GP L Y+ + GS+ +
Sbjct: 40 AGQRERTITSGFLHVDVAHLFVNMFTLYFFADVVIDWFGPSRFLITYLVSLLAGSLLAMY 99
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFL 280
+H D A+GASGAV ++ I L P+ L F IP+PA++
Sbjct: 100 FHR--------------DEPFYSAVGASGAVTGVLYAAILLEPEMRLALMFIPIPLPAYI 145
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
LG+ + + + NI +AH GGA
Sbjct: 146 LGIAYLLYSIYGMKSRLGNIGHTAHFGGAV 175
>gi|134107704|ref|XP_777463.1| hypothetical protein CNBB0370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260155|gb|EAL22816.1| hypothetical protein CNBB0370 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 339
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 42/240 (17%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQF---------PERSFASFRYRWRSWLRQYG 122
LL +R FTS +S +R ++F + P F R R + +
Sbjct: 85 LLTKRSFTSSTNSLIRSTYFPRGGRSGGNGYGSGGGGPQGPWAWFTRLRRR----IDRIP 140
Query: 123 SSEVVYGLIIANTAVFMLWRIA--------------DPKFMANNFTISLDNFLSGRLHTL 168
+ +VYGLI N AVF+LW+ A M++ + L + + R TL
Sbjct: 141 TMTLVYGLIGINGAVFLLWQYALSSASTSFPGECRCISPLMSHLEHVHLADETTSRW-TL 199
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+TSAFSH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 200 VTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF--- 256
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVFLI 286
R W + GASGA+ A + L P + + F IP+P ++ G+F +
Sbjct: 257 --SRHRWWGSE-------GASGAIYACLAYYGALFPNSQVLMFFVIPMPVWVAIGGIFAV 307
>gi|367015702|ref|XP_003682350.1| hypothetical protein TDEL_0F03280 [Torulaspora delbrueckii]
gi|359750012|emb|CCE93139.1| hypothetical protein TDEL_0F03280 [Torulaspora delbrueckii]
Length = 341
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 17/198 (8%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ S +VYGL+ N VF LW++ + + + + D+ S ++I SAFSH ++
Sbjct: 134 KHNPSHMVYGLLGINAVVFGLWQLPRNWRILQRYMMLEKDHIYSK--WSVIGSAFSHQEL 191
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ NM+ L+ FG S+ LG LYM A+ GS+F L Y R GM
Sbjct: 192 WHLGMNMLALWSFGTSLASILGASNFFSLYMNSAVAGSLFSLWYPRI-----ARLGM--- 243
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK--DMLRIIEG 296
P+LGASGA+ + +L P A + F P+P FL +
Sbjct: 244 ---IGPSLGASGALFGVFGCFSYLFPSAKILLLVF-PIPGGAWVAFLAASAWNAAGCALR 299
Query: 297 NSNISGSAHLGGAAVAAL 314
+ +AHLGG+ V L
Sbjct: 300 WGSFDYAAHLGGSLVGVL 317
>gi|315427037|dbj|BAJ48654.1| rhomboid family protein [Candidatus Caldiarchaeum subterraneum]
gi|343485705|dbj|BAJ51359.1| rhomboid family protein [Candidatus Caldiarchaeum subterraneum]
Length = 227
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMA-NNFTISLDN----FLSGR-LHTLITSAFSHIDV 178
+V+ +I+AN V++ I +A N F +S L+G+ L +LI+ F H+D
Sbjct: 11 RLVFVIIVANIVVWLFINIVFTNQVALNRFLLSFGAVPFFILNGQNLLSLISYMFIHVDF 70
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-FLAMSSKRQGMWV 237
HI NM L+ FG + LG L +Y + +VF+++Y+A F+++ +
Sbjct: 71 LHIFLNMYALFLFGRDVEERLGSALFLVVYFLSGVVAAVFHMIYYAVFMSLECSPFVRPL 130
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATL-YFDFFIPV--PAFLLGVFLI-GKDMLRI 293
PA+GASGA+ IM + P+ L F + IP+ PA+++ F+I + +
Sbjct: 131 PAVCVVPAIGASGAIFGIMGSYLVFFPRRPLAAFLYLIPIIAPAYIVIAFIILIQTFFML 190
Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
S I+ +AH+GG L R RG
Sbjct: 191 TMPFSTIAYTAHVGGFIAGLLTSLPFRNRG 220
>gi|159185813|ref|NP_357018.2| hypothetical protein Atu3594 [Agrobacterium fabrum str. C58]
gi|159140947|gb|AAK89803.2| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 257
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVINVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+ AI G++F H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLVCAIAGALF----HGFVAPTS 134
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLI 286
+ P +GASGAV+ ++ L+P+ ++ +P+PAF+ I
Sbjct: 135 E-----------GPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLALWI 183
Query: 287 GKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR 321
G+ L + G N+S AH+GG A+ +RR
Sbjct: 184 GQQFLMLALGLEQNVSWGAHVGGILAGAIMVIFMRR 219
>gi|297526073|ref|YP_003668097.1| Rhomboid family protein [Staphylothermus hellenicus DSM 12710]
gi|297254989|gb|ADI31198.1| Rhomboid family protein [Staphylothermus hellenicus DSM 12710]
Length = 268
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFT-----------ISLDNFLSGRLHTLITS 171
S V +I+ NT VF+L I +P+ + T I + RL T+ T+
Sbjct: 19 SPVVTLSIILVNTVVFILMYI-EPQLLVPGATNVYEVQRQLAMIPIAIVRGERLWTIFTA 77
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
F+H D+ H++ NMI L+FFG + + + L Y G I VF+++ +
Sbjct: 78 MFTHADIYHLLGNMIFLFFFGGPVESVMSRKRYLLFYFLGGIMADVFHILSITIIPSHYL 137
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPAFLLGV- 283
G +++P TP LGASGA++A+M + P++ +Y + IP +PA++ +
Sbjct: 138 ITGKTIINPWVTPTLGASGAISAVMGAYLIYYPRSRITMVYPIWIIPLIFTLPAWVYILL 197
Query: 284 ---FLIGKDMLRIIEGNSNISGSAHLGG 308
+ + ++ ++ S+I+ AH+GG
Sbjct: 198 WFSYQLIMGLITLLGFASSIAFWAHIGG 225
>gi|330932530|ref|XP_003303814.1| hypothetical protein PTT_16175 [Pyrenophora teres f. teres 0-1]
gi|311319957|gb|EFQ88103.1| hypothetical protein PTT_16175 [Pyrenophora teres f. teres 0-1]
Length = 275
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 24/218 (11%)
Query: 119 RQYGSSEVVYGLIIANTAVF-----------MLWRIADPKFMANNFTISLDNFLSGRLHT 167
R+ + V+Y LI N AV+ +++ KF+ T++L F +G
Sbjct: 62 RETANRAVLYTLIGTNVAVYGYAMYLKQQAMQGYQLPFVKFL-QKMTLNLSEFQNGSYLP 120
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
++TS F+HID+ HI SNM YF G ++ T+ P L + + + GS+ YL ++ +
Sbjct: 121 ILTSTFTHIDIGHIFSNMFTGYFLGSFLASAPTITPLRYLTIAIGSGLAGSIGYL-FNRY 179
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGV 283
+ ++ G D +R LG SG+V I + L PKA + IP+P A + G
Sbjct: 180 YRLQAEAPG--TRDTTR--GLGFSGSVMGISSVAACLAPKARVAIWGIIPMPLWALVTGY 235
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW-ARIR 320
+ L +E S I + HLGG A L + AR+R
Sbjct: 236 AVYDGYYLNSVE--SRIGHAGHLGGLAFGLLYYVARLR 271
>gi|196003924|ref|XP_002111829.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
gi|190585728|gb|EDV25796.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
Length = 327
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 115/266 (43%), Gaps = 36/266 (13%)
Query: 61 SLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSF---------ASFR 111
+L T F+F+ + FT + ++ K G + R + P + F FR
Sbjct: 71 NLVTKPFIFSVAVCAVSFTGAIIAEYEKMRSLGIMGLSRIRGPFKDFFQDFTRYKNGEFR 130
Query: 112 YRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHT 167
+ W S V IIA N VF LW+I PK FM FT +N SGR T
Sbjct: 131 RKLNRWWNSLPDSRKVATTIIAINAGVFALWKI--PKLFPFMVRWFT---NNPASGRSIT 185
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS FSH D H+ NM L+ F LG E Y++ + S+ +YH LA
Sbjct: 186 LLTSTFSHFDWWHLGMNMFVLWNFAPLACDILGKEQFFATYISAGVFASLGQNLYH--LA 243
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL---YFDFF-IPVPAFLLGV 283
+ S +R LGASGA+ + + P L + FF P+ +L +
Sbjct: 244 IRS----------TRVFGLGASGALMGTLAVICLKRPDTQLSIIFLPFFSFPITHGMLAI 293
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGA 309
I D+L ++ +S SAHL GA
Sbjct: 294 MAI--DVLGLLFRWRFLSHSAHLSGA 317
>gi|319786966|ref|YP_004146441.1| rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465478|gb|ADV27210.1| Rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 205
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV-FYLVYHAFL 226
L+T F H D H++ NM L+FFG I R M G G + F L Y + +
Sbjct: 46 LLTHGFLHADFPHLLFNMFTLFFFGGLIERL----------MTGITGSRLTFLLFYLSAI 95
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ + + R +LGASGAV+A++ I + P +L FF+P+PA + VF +
Sbjct: 96 VVAILPSYLKNIGNPRYFSLGASGAVSAVLFAFIMVKPW-SLILVFFVPMPAIVYAVFYV 154
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAAL 314
G + G NI+ SAHL GAA L
Sbjct: 155 GYSIWMDRRGGGNINHSAHLAGAAYGVL 182
>gi|302306353|ref|NP_982633.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|299788476|gb|AAS50457.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|374105832|gb|AEY94743.1| FAAR092Wp [Ashbya gossypii FDAG1]
Length = 335
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ + Y +I N VF LW+ P+F + + D+ S +LI SAFSH + H
Sbjct: 132 AHLTYAIIGLNCVVFGLWQ--RPRFWLPLQRYALLQKDHIYSK--WSLIGSAFSHQEFWH 187
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
NMI L+ FG S+ +LGP LYM A+G S+F L Y ++
Sbjct: 188 FGMNMICLWSFGTSLAMSLGPANFASLYMNSALGASLFSLWYPRIARIALM--------- 238
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNS 298
P+LGASGA+ + + +L P + + FF+P+P A++ + + ++ +
Sbjct: 239 --GPSLGASGALFGMFAMFSYLAPNSKIML-FFLPIPIDAWVGFLGMTTWNLAGCVFRWG 295
Query: 299 NISGSAHLGGAAVAAL-AWARIRR 321
+AH+GG A+ L W R+
Sbjct: 296 TFDYAAHVGGTAMGLLYGWWMSRK 319
>gi|408371345|ref|ZP_11169112.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
gi|407743175|gb|EKF54755.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
Length = 215
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++TS F H+D+ H++ NM+ LYFF + LG L +Y+ + G+V +++H
Sbjct: 46 ILTSGFLHVDMTHLLFNMLTLYFFAPIVVVYLGSVKFLIIYLISLVAGNVLSMIFHK--- 102
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
+ A+GASGAV I+ I L P L F F IPVPA++ G+ +
Sbjct: 103 -----------NEYHYSAVGASGAVTGILYAAILLQPDMRLGFFFIPIPVPAYIFGIGYL 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
+ + NI +AH GGA
Sbjct: 152 LYSIYGMRNRVGNIGHTAHFGGA 174
>gi|410970908|ref|XP_004001528.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial [Felis catus]
Length = 379
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVXVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|408489615|ref|YP_006865984.1| membrane-associated serine protease, rhomboid superfamily
[Psychroflexus torquis ATCC 700755]
gi|408466890|gb|AFU67234.1| membrane-associated serine protease, rhomboid superfamily
[Psychroflexus torquis ATCC 700755]
Length = 215
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G ++V +IA + D +F N + + + +G +++S F H+D H+
Sbjct: 2 GGIDLVIIAVIAANVLMSFKGFKDSQFF-NKYKFDVSSIKAGDKIRVLSSGFLHVDTTHL 60
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM+ LYFF S+ LG L +Y I G++ L +H D
Sbjct: 61 FVNMLTLYFFASSVTSFLGTTGFLLVYFGSLIIGNLLSLYFHK--------------DDY 106
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNIS 301
A+GASGAV ++ I L P L F IP+PA++ G+ + + + N+
Sbjct: 107 GYTAVGASGAVVGVLYAAILLQPDMMLGLFFIIPMPAYVFGIGYLFYSIWAMKARRDNVG 166
Query: 302 GSAHLGGA 309
AH GGA
Sbjct: 167 HDAHFGGA 174
>gi|126465643|ref|YP_001040752.1| rhomboid family protein [Staphylothermus marinus F1]
gi|126014466|gb|ABN69844.1| Rhomboid family protein [Staphylothermus marinus F1]
Length = 262
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 23/201 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT-----------ISLDNFLSGRLHTLITSAFSHIDV 178
+I+ N VF+L I +P+ + T I + RL T+ T+ F+H D+
Sbjct: 20 IILINIVVFILMYI-EPQLLVPGATNAYEVQRQLAMIPIAIVRGERLWTIFTAMFTHADI 78
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H++ NMI L+FFG + +G + L Y G I +F+++ + G ++
Sbjct: 79 YHLLGNMIFLFFFGGPVESVMGRKRYLLFYFLGGIMADIFHILSITIIPSQYLITGKIII 138
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPAFLLGV----FLIG 287
+P TP LGASGA++A+M + P++ +Y + IP +PA++ + + +
Sbjct: 139 NPWVTPTLGASGAISAVMGAYLIYYPRSRITMVYPIWIIPLIFTLPAWVYILIWFFYQLV 198
Query: 288 KDMLRIIEGNSNISGSAHLGG 308
++ ++ S+I+ AH+GG
Sbjct: 199 MGLITLLGFASSIAFWAHIGG 219
>gi|120436400|ref|YP_862086.1| rhomboid family protein [Gramella forsetii KT0803]
gi|117578550|emb|CAL67019.1| rhomboid family protein [Gramella forsetii KT0803]
Length = 215
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+I V + ++ + N + ++ + G + ++TS F H+D H+ NM+ LY
Sbjct: 9 LVIIGVNVLISFKGFSDQAFFNKYKFNVADIKGGAKYQILTSGFLHVDTSHLFVNMLTLY 68
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
FF + +G L +Y+ + G++ +H K+ + A+GAS
Sbjct: 69 FFANVVIYGIGTTAFLLIYIGSLLFGNLVSYFFH-------KKD-------YQYTAVGAS 114
Query: 250 GAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
GAV I+ I L P TL F IPVPA++ G+ + + + NI AH GGA
Sbjct: 115 GAVMGILYSAILLQPDMTLGLFFVIPVPAYVFGIGYLFYTIYGMKRRTDNIGHDAHFGGA 174
>gi|406036606|ref|ZP_11043970.1| hypothetical protein AparD1_06527 [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 205
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL-YMAGAIGGSVFYLV 221
G+ IT F H D H++ NMI L+FFG +I + ++ + ++ +GG VF
Sbjct: 43 GQYDRFITHGFIHADGAHLLFNMITLFFFG-NIIESFYRQFFYDMGFVLFYLGGLVF--- 98
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 99 --AILPSYLKHR-----HDVHWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAIIF 150
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V + + GNSNI+ SAHL GAA + + R
Sbjct: 151 AVLYVAYSIWSGKRGNSNINHSAHLWGAAYGVVVTILLEPR 191
>gi|374594805|ref|ZP_09667809.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
gi|373869444|gb|EHQ01442.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
Length = 226
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G + ++TS F H+D H+ NM+ LYFF + +G L +Y+A I G++ +
Sbjct: 53 GAKYQILTSGFLHVDSSHLFVNMLTLYFFANVVLNDMGSLGFLLVYLASLILGNLLSYFF 112
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
H D A+GASGAV ++ I L P L F IP+PA++ G
Sbjct: 113 HK--------------DEENYNAVGASGAVMGVLYSAILLRPDMMLGLFFIIPIPAYVFG 158
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + + NI AH GGA
Sbjct: 159 IGYLLYTIYGMKRRQDNIGHDAHFGGAV 186
>gi|418520077|ref|ZP_13086128.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410704737|gb|EKQ63219.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 202
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H++ NMI L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLIFNMITLFFFGRVIENV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA L VF +
Sbjct: 93 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFASILLQPW-TIILVLFIPAPAILYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|402860811|ref|XP_003894813.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Papio anubis]
Length = 420
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ LY+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMALYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|226952463|ref|ZP_03822927.1| rhomboid-like protein [Acinetobacter sp. ATCC 27244]
gi|294649751|ref|ZP_06727156.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226836785|gb|EEH69168.1| rhomboid-like protein [Acinetobacter sp. ATCC 27244]
gi|292824360|gb|EFF83158.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 205
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG +I + ++ + G +FYL
Sbjct: 43 GQYDRFITHGFVHADGMHLLFNMITLFFFG-NIIESFYRQFFYDM------GFVLFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + +R +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIVAILPSYLKHR-----HDARWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + GNSNI+ SAHL GAA
Sbjct: 150 FAILYVAYSVWSGKRGNSNINHSAHLWGAA 179
>gi|50288543|ref|XP_446701.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526009|emb|CAG59628.1| unnamed protein product [Candida glabrata]
Length = 341
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ ++VY ++ N VF +WRI +F+ + D+ S ++ SAFSH +
Sbjct: 134 KHNPKDLVYAILGTNLLVFGMWRIPQCWRFLQKYMLLQKDHMASK--WAIVGSAFSHQEF 191
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ NM+ L+ FG S+ LG LYM AI GS+F L Y + + ++
Sbjct: 192 WHLGMNMLALWSFGTSLASILGTANFFSLYMNSAIAGSLFSLWY-------PRIAKLMMI 244
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKAT-LYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
PS LGASGA+ + +L P+A L F F IP A++ + + ++ +
Sbjct: 245 GPS----LGASGALFGVFGSFAYLFPQAKILLFVFPIPGGAWVAFLGSVAWNLAGCVLRW 300
Query: 298 SNISGSAHLGGAAVA-ALAW 316
+ +AHLGG+ + A W
Sbjct: 301 GSFDYAAHLGGSLMGIAYGW 320
>gi|325287716|ref|YP_004263506.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324323170|gb|ADY30635.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 215
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
+IIA +F L + D F + S+ +G+ + TS F H+D+ HI NM LY
Sbjct: 9 VIIALNIIFTLKGLKDTSFF-ERYKFSIGGIKAGQKERMFTSGFLHVDISHIFFNMFTLY 67
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
FF + +GP Y + +Y+ + GS+ L +H D A+GAS
Sbjct: 68 FFANVVIAYMGPLYFVLMYVISLLAGSLLALFFHK--------------DEPYYSAVGAS 113
Query: 250 GAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
GAV I+ I L P L F IP+PA++ G+ + + + + NI +AH GG
Sbjct: 114 GAVTGILYAAILLEPNMRLGIMFIPIPMPAYVFGIGYLLYSIYGMKKRIGNIGHTAHFGG 173
Query: 309 A 309
A
Sbjct: 174 A 174
>gi|426217826|ref|XP_004003153.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Ovis aries]
Length = 377
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|373109802|ref|ZP_09524077.1| hypothetical protein HMPREF9712_01670 [Myroides odoratimimus CCUG
10230]
gi|423131454|ref|ZP_17119129.1| hypothetical protein HMPREF9714_02529 [Myroides odoratimimus CCUG
12901]
gi|371641870|gb|EHO07449.1| hypothetical protein HMPREF9714_02529 [Myroides odoratimimus CCUG
12901]
gi|371644148|gb|EHO09688.1| hypothetical protein HMPREF9712_01670 [Myroides odoratimimus CCUG
10230]
Length = 216
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + ++ G + ITS F H+D H NM+ LYFF I G Y L +Y+A
Sbjct: 29 NKYCFDINQINRGERYRFITSGFLHVDWMHFAFNMLTLYFFADIIIHVSGVLYFLIVYVA 88
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+ G++ L Y + R A+GASGA+ ++ I LNP +LY
Sbjct: 89 SLLVGNI--LTYQFYKNQPHYR------------AVGASGAIMGVLYASIMLNPSMSLYM 134
Query: 271 DFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
F IP+PA++ V + + + + + I +AH+GGA
Sbjct: 135 FFIPIPIPAYIFAVGYLLYSLYGMKKNSDGIGHTAHIGGA 174
>gi|86133051|ref|ZP_01051633.1| rhomboid family protein [Polaribacter sp. MED152]
gi|85819914|gb|EAQ41061.1| rhomboid family protein [Polaribacter sp. MED152]
Length = 218
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++TS F H+D H++ NM LY FG + LG L +Y I GS++ L YH
Sbjct: 48 MLTSGFLHVDWMHLILNMYVLYAFGNIVINFLGTLPFLIIYFGSLIAGSLYTLQYHK--- 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
+ A+GASGAV+ I+ I L P +LY F +P+P ++ GV +
Sbjct: 105 -----------NEPYYSAVGASGAVSGIVYASILLYPGMSLYLFFIPVPIPGYIFGVGYL 153
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
+ + + N+ +AHLGGA
Sbjct: 154 LYSIYGMKKQVGNVGHAAHLGGA 176
>gi|110665602|gb|ABG81447.1| presenilin associated, rhomboid-like preproprotein [Bos taurus]
gi|119936502|gb|ABM06139.1| presenilin associated, rhomboid-like isoform 1 preproprotein [Bos
taurus]
Length = 376
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 126 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 184
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 185 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 241
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 242 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 287
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 288 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 336
>gi|301759795|ref|XP_002915746.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
gi|281354055|gb|EFB29639.1| hypothetical protein PANDA_003760 [Ailuropoda melanoleuca]
Length = 379
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT S + + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFTSSPASKV--LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQF 245
Query: 205 LKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 246 MAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTKI 291
Query: 264 PKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 292 PEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|255037309|ref|YP_003087930.1| rhomboid family protein [Dyadobacter fermentans DSM 18053]
gi|254950065|gb|ACT94765.1| Rhomboid family protein [Dyadobacter fermentans DSM 18053]
Length = 206
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL------- 199
K + N + ++ N + ITS F H D H++ NM+ L+F G SI R
Sbjct: 27 KLILNPYRVTQRN----EYYRFITSGFVHADFGHLIFNMLSLWFVGESIERLFAMLFGSS 82
Query: 200 GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLD 259
G Y L LY+ G + + + H SR +LGASG V+A++
Sbjct: 83 GTFYYLFLYLVGIVVSDIPTFLKHR--------------KNSRYNSLGASGGVSAVLFAA 128
Query: 260 IFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
I P + FFI +P F+ G+ +G G S ++ SAH+ GA
Sbjct: 129 ILFAPLMQICLYFFICMPGFIFGLLFLGYSFYEARRGTSYVNHSAHMYGA 178
>gi|110287782|sp|Q2KHV4.1|PARL_BOVIN RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial intramembrane
cleaving protease PARL; Contains: RecName: Full=P-beta;
Short=Pbeta; Flags: Precursor
gi|86826405|gb|AAI12870.1| Presenilin associated, rhomboid-like [Bos taurus]
gi|296491236|tpg|DAA33299.1| TPA: presenilins-associated rhomboid-like protein, mitochondrial
precursor [Bos taurus]
Length = 377
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|387763188|ref|NP_001248478.1| presenilins-associated rhomboid-like protein, mitochondrial [Macaca
mulatta]
gi|90083314|dbj|BAE90739.1| unnamed protein product [Macaca fascicularis]
gi|380789625|gb|AFE66688.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
gi|383419761|gb|AFH33094.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
gi|384944096|gb|AFI35653.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
Length = 379
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ LY+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMALYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|62751512|ref|NP_001015596.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Bos taurus]
gi|59857717|gb|AAX08693.1| presenilin associated, rhomboid-like [Bos taurus]
Length = 377
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|291400361|ref|XP_002716535.1| PREDICTED: presenilin associated, rhomboid-like isoform 1
[Oryctolagus cuniculus]
Length = 377
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIKYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P L F+P+ F G L I D +I G +AHLGGA
Sbjct: 289 IPDGKLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|11066250|gb|AAG28519.1|AF197937_1 presenilins associated rhomboid-like protein [Homo sapiens]
Length = 379
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V YL +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYLG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|156837355|ref|XP_001642705.1| hypothetical protein Kpol_359p8 [Vanderwaltozyma polyspora DSM
70294]
gi|156113265|gb|EDO14847.1| hypothetical protein Kpol_359p8 [Vanderwaltozyma polyspora DSM
70294]
Length = 348
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +VY ++ N VF LW++ + +F+ + N S +LI SAFSH + H+
Sbjct: 145 SHLVYTILGLNVVVFGLWQLPKNWRFLQRYMLLEKSNIYSK--WSLIGSAFSHQEGWHLA 202
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGMWVVDP 240
NM+ L+ FG S+ LG LYM A+G S+F L Y A L M
Sbjct: 203 MNMLALWSFGTSLCSMLGASNFFSLYMNSALGASLFSLWYPKIARLMMMG---------- 252
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKAT-LYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN 299
P+LGASGA+ I +L P+A L F F IP A++ + + +
Sbjct: 253 ---PSLGASGALFGIFGCFSYLFPQAKILLFVFPIPGGAWVAFLAAMAWNAAGCALRWGT 309
Query: 300 ISGSAHLGGAAVA-ALAW 316
+AHLGG+ + A W
Sbjct: 310 FDYAAHLGGSMIGVAYGW 327
>gi|333382814|ref|ZP_08474480.1| hypothetical protein HMPREF9455_02646 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828415|gb|EGK01124.1| hypothetical protein HMPREF9455_02646 [Dysgonomonas gadei ATCC
BAA-286]
Length = 218
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TSA H D H++ NM+ LYFF I ++LG L +Y IGG + L H
Sbjct: 51 LLTSATLHGDYMHLIFNMMTLYFFSSVIIQSLGIWQYLTIYFLSIIGGGLLSLWVHR--- 107
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
A+GASG V I+ I L P TL F +P+ +L G+ +G
Sbjct: 108 -----------KEYYYSAIGASGGVVGILFAAIALYPDMTLGVMFILPMKGWLFGILYLG 156
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVA 312
+ + NI AHLGGAA+
Sbjct: 157 YSIYGMHTRQGNIGHDAHLGGAAIG 181
>gi|89890964|ref|ZP_01202473.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
gi|89517109|gb|EAS19767.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
Length = 212
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
+F + + ++ G +TS F H D++H++ NM+ LYFF + LG L
Sbjct: 26 DRFFFDKYKFNIAGIQRGEQLRFLTSGFLHADMQHLIFNMLTLYFFAHYVVVDLGDIGFL 85
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
+Y A +GG V V+H D A+GASGAV I+ I L P+
Sbjct: 86 VVYFASLLGGGVLSYVFHQ--------------DEYHYSAIGASGAVMGIIYSAILLEPR 131
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+Y +P F+ G+ + + + + NI AH GGA
Sbjct: 132 IYIYG----IIPGFVFGIGYLAYSIYGMKNKSDNIGHDAHFGGAV 172
>gi|84623888|ref|YP_451260.1| hypothetical protein XOO_2231 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367828|dbj|BAE68986.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 202
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H+V NM+ L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIESV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
A+S + +LGASGAV+A++ I L P T+ FIP PA + VF +
Sbjct: 93 AVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAIIYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|350591766|ref|XP_003483328.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Sus scrofa]
Length = 379
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCAPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|365959428|ref|YP_004940995.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
gi|365736109|gb|AEW85202.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
Length = 213
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
L++ VF+ ++ D F +N++ ++ SG + TS F H D H+ NM L
Sbjct: 6 LLLIGVTVFVSYKGFTDYNF-SNHYEFNVGKIRSGEQIRMFTSGFLHNDWGHLFFNMFTL 64
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
Y F + LG L +YM GS+ + YH + A GA
Sbjct: 65 YMFAPIVIYNLGSNVFLIIYMVSLFSGSLLSMAYHK--------------NTFNYRARGA 110
Query: 249 SGAVNAIMLLDIFLNPKATLY-FDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLG 307
SGAV I+ I LNP+ LY F IP+PA++ G+ + + + N +I AH G
Sbjct: 111 SGAVVGILYTAILLNPEIDLYLFLIPIPIPAYVFGIGYLLYSIYGMKAKNDHIGHEAHFG 170
Query: 308 GAAVAALAWARIR 320
GA L+ I+
Sbjct: 171 GALGGLLSTILIQ 183
>gi|74003236|ref|XP_545224.2| PREDICTED: presenilin associated, rhomboid-like isoform 2 [Canis
lupus familiaris]
Length = 379
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|109639153|ref|NP_001030326.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Rattus norvegicus]
gi|118582201|sp|Q3B8P0.1|PARL_RAT RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|77748257|gb|AAI05908.1| Presenilin associated, rhomboid-like [Rattus norvegicus]
gi|149019841|gb|EDL77989.1| rCG36805 [Rattus norvegicus]
gi|165970636|gb|AAI58565.1| Presenilin associated, rhomboid-like [Rattus norvegicus]
Length = 377
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+PV F G L I D +I G +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|62122777|ref|NP_001014320.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Danio rerio]
gi|82178438|sp|Q58EK4.1|PARL_DANRE RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; Flags: Precursor
gi|61402545|gb|AAH91865.1| Zgc:112986 [Danio rerio]
gi|182889200|gb|AAI64781.1| Zgc:112986 protein [Danio rerio]
Length = 383
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G+I NT V WR+ A +F+ FT + + R ++ S+FSH V H+V
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM L+ F SI LG E L LY++G + + V+ ++ R G
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKT----ATGRLG--------- 272
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGKDMLRIIEGNSNI 300
P+LGASG++ ++ P+A L +PV +F G L+ D+ ++ G
Sbjct: 273 PSLGASGSIMTVLAAVCTKIPEAKLGI-VLLPVISFSAGNALKALVALDIAGLVLGWRFF 331
Query: 301 SGSAHLGGA 309
+AHLGGA
Sbjct: 332 DHAAHLGGA 340
>gi|308050685|ref|YP_003914251.1| rhomboid family protein [Ferrimonas balearica DSM 9799]
gi|307632875|gb|ADN77177.1| Rhomboid family protein [Ferrimonas balearica DSM 9799]
Length = 348
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 30/203 (14%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMA---NNFTISLDNFLSGR-LHTLITSAFSHIDVEHI 181
+VY LI+ N A F L +A P +M +N T+ D ++G+ L +L+T+ F H V H+
Sbjct: 141 LVYLLILINVAQFGL-ELAYPNWMQWTYDNLTLRPDQVMAGQQLWSLLTNMFIHGSVAHL 199
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP- 240
+ NM LY G ++ LG L +Y+A + G V ++ DP
Sbjct: 200 LGNMYFLYVVGDNLEDVLGRWRFLAIYLACGLVGGVAQVLS----------------DPG 243
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI----PVPAFLLGVFLIGKDMLRIIEG 296
S P LGASGAV + + + A+L F +I PA+ G++L+ +++ +++
Sbjct: 244 SDIPILGASGAVAGLFGMYLMWFRHASLTFMLWIFQKKLSPAWFFGIWLV-INVIGVVQQ 302
Query: 297 NSNISGSAHLGG---AAVAALAW 316
++ AH+GG V +AW
Sbjct: 303 GEGVAYWAHIGGFISGLVVGIAW 325
>gi|58581972|ref|YP_200988.1| hypothetical protein XOO2349 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58426566|gb|AAW75603.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H+V NM+ L+FFG I MA G + Y L Y A L
Sbjct: 28 LVTYGFIHADLGHLVFNMVTLFFFGRVIESV----------MAQLTGSVLTYPLFYLAAL 77
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
A+S + +LGASGAV+A++ I L P T+ FIP PA + VF +
Sbjct: 78 AVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAIIYAVFYV 136
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 137 GYSLWMDRCGGDRINHSAHLAGAA 160
>gi|42525643|ref|NP_970741.1| rhomboid [Treponema denticola ATCC 35405]
gi|422340835|ref|ZP_16421776.1| rhomboid family protein [Treponema denticola F0402]
gi|449103871|ref|ZP_21740614.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|449106028|ref|ZP_21742720.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|449108116|ref|ZP_21744760.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|449110633|ref|ZP_21747233.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|449114556|ref|ZP_21751033.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|449118805|ref|ZP_21755206.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|449121194|ref|ZP_21757546.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|449124938|ref|ZP_21761255.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|449129942|ref|ZP_21766170.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|451967767|ref|ZP_21920996.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
gi|41815654|gb|AAS10622.1| rhomboid family protein [Treponema denticola ATCC 35405]
gi|325475239|gb|EGC78424.1| rhomboid family protein [Treponema denticola F0402]
gi|448940621|gb|EMB21526.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|448944577|gb|EMB25455.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|448951420|gb|EMB32233.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|448951833|gb|EMB32642.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|448956181|gb|EMB36943.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|448960007|gb|EMB40724.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|448961966|gb|EMB42660.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|448964324|gb|EMB44996.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|448966596|gb|EMB47251.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|451703553|gb|EMD57919.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
Length = 209
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAM 228
T F H D H+ NM+ L+FFG+ + R +G E++L + G IGG + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIGGILSFLVYAA---- 113
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
G + + +GASGA+ ++LL L P + +Y IPVPA LL ++G
Sbjct: 114 ----TGFYTIT-----LIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLL---ILGY 161
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
++ +I S G AHL W IR R
Sbjct: 162 AVIELISIFSIGDGVAHLTHFIGLIAGWVYIRIR 195
>gi|146302229|ref|YP_001196820.1| rhomboid family protein [Flavobacterium johnsoniae UW101]
gi|146156647|gb|ABQ07501.1| Rhomboid family protein [Flavobacterium johnsoniae UW101]
Length = 212
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ ++ G+I+AN V + ++ + F + + +G ++TS F H D+ H+
Sbjct: 2 NTILIGIIVAN--VLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFF 59
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ L+FF + +LG + +Y I GS+ +++H +
Sbjct: 60 NMLTLWFFAPVVIDSLGNFSFVLVYFGSLIFGSLLTMLFHK--------------NDYSY 105
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS 303
A+GASGAV ++ I L+P L F IP+PA+L G+ + + + N NI +
Sbjct: 106 RAVGASGAVTGVLYSAILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKNDNIGHT 165
Query: 304 AHLGGAA 310
AH GGA
Sbjct: 166 AHFGGAV 172
>gi|395803839|ref|ZP_10483081.1| rhomboid family protein [Flavobacterium sp. F52]
gi|395433958|gb|EJF99909.1| rhomboid family protein [Flavobacterium sp. F52]
Length = 212
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +++S F H+D+ H++ NM+ LYFF + LG + +Y I GS+ ++
Sbjct: 38 SGEQIRMLSSGFLHVDMMHLIFNMLTLYFFAPVVLGWLGNFSFILVYFGSLIFGSLLTML 97
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+H + A+GASGAV ++ I L P L + IP+PA+L
Sbjct: 98 FHK--------------NDYSYRAVGASGAVTGVLYSAILLEPDMMLGIFYVIPMPAYLF 143
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + + N NI +AH GGA
Sbjct: 144 GILYLLYSIYGMKAKNDNIGHTAHFGGA 171
>gi|325913985|ref|ZP_08176341.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
gi|325539754|gb|EGD11394.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
Length = 202
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H DV H+V NMI L+FFG I M G + Y L Y A L
Sbjct: 43 LVTYGFIHADVGHLVFNMITLFFFGRVIENV----------MTQLTGSMLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + + +LGASGAV+A++ I L P T+ FIP PA + VF +
Sbjct: 93 VVSILPSYLKNQNNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAIIYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|56971807|gb|AAH88226.1| Psarl protein, partial [Rattus norvegicus]
Length = 363
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 113 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 171
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 172 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 228
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 229 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 274
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+PV F G L I D +I G +AHLGGA
Sbjct: 275 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 323
>gi|347524076|ref|YP_004781646.1| Rhomboid family protein [Pyrolobus fumarii 1A]
gi|343460958|gb|AEM39394.1| Rhomboid family protein [Pyrolobus fumarii 1A]
Length = 254
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 22/201 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT-----ISLDNFL---SGRLHTLITSAFSHIDVEHI 181
LI N A+F++ +A A+++ L FL LH L+T F H ++H+
Sbjct: 21 LIAVNVAIFIIGVLAPGLLGAHSYNEIVLKYGLVPFLLVNGVELHRLLTHMFLHGGLDHL 80
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS--KRQGMWVVD 239
+ NM+ LY FG +I T+GP L Y+ G + F+++ A + + + VD
Sbjct: 81 LGNMLFLYIFGDNIEATMGPARYLAFYVIGGLVAVAFHVLSIAMMPPEALLNYRSFTGVD 140
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIPVPAFL-LGVFLIGKDMLRIIE 295
P PA+GASGA++A++ + L P++ L F P+P + GVF++ + ++
Sbjct: 141 PWLVPAIGASGAISAVLGAYLLLYPRSLIRALVFWLIFPMPVVVPAGVFILFWFIYQLFM 200
Query: 296 GNSNISGS--------AHLGG 308
G + ++G AH+GG
Sbjct: 201 GMATLTGGLPTGVAFWAHIGG 221
>gi|182681852|ref|YP_001830012.1| rhomboid family protein [Xylella fastidiosa M23]
gi|386083155|ref|YP_005999437.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558058|ref|ZP_12209051.1| membrane protein [Xylella fastidiosa EB92.1]
gi|182631962|gb|ACB92738.1| Rhomboid family protein [Xylella fastidiosa M23]
gi|307578102|gb|ADN62071.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179302|gb|EGO82255.1| membrane protein [Xylella fastidiosa EB92.1]
Length = 202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 43 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSI------ 96
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L K Q +P + +LGASGAV+A++ + L P A L FIP PA V
Sbjct: 97 --LPSYIKNQK----NP-KYLSLGASGAVSAVLFAAVLLQPWA-LIVVLFIPAPAIFYAV 148
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
F +G + G+ I+ SAHL GAA
Sbjct: 149 FYVGYSIWMGRRGDDGINHSAHLSGAA 175
>gi|384486321|gb|EIE78501.1| hypothetical protein RO3G_03205 [Rhizopus delemar RA 99-880]
Length = 158
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSA 172
++V++ +I N VF++W A FM +FT+S +F SGR +TL+TSA
Sbjct: 4 NKVLWTIIGTNLGVFLVWTYAKNSYSQFGDARWLNFMYRHFTVSEASFDSGRYYTLLTSA 63
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
FSH + H+ NM LY G + +GP L LY + S+ L Y ++ S +R
Sbjct: 64 FSHNLLPHLGMNMFVLYSMGQGVLEAIGPSRFLLLYAGAGLCASLTTLAYKKYIRPSLER 123
Query: 233 QGMWVVDPSRTP-ALGASGAVNAI 255
R +LGASG++ +
Sbjct: 124 SKYGYHQRGRHEFSLGASGSIMGL 147
>gi|78047064|ref|YP_363239.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925108|ref|ZP_08186525.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346724352|ref|YP_004851021.1| hypothetical protein XACM_1440 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|381170297|ref|ZP_09879455.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390989747|ref|ZP_10260042.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418515745|ref|ZP_13081924.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|78035494|emb|CAJ23139.1| putative Rhomboid family membrane protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544474|gb|EGD15840.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346649099|gb|AEO41723.1| Uncharacterized membrane protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372555611|emb|CCF67017.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380689167|emb|CCG35942.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410707654|gb|EKQ66105.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H++ NMI L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLIFNMITLFFFGRVIENV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA L VF +
Sbjct: 93 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAILYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|408376496|ref|ZP_11174101.1| rhomboid family protein [Agrobacterium albertimagni AOL15]
gi|407749963|gb|EKF61474.1| rhomboid family protein [Agrobacterium albertimagni AOL15]
Length = 285
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 34/228 (14%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIAD--------------PKFMANNFTISLDNF 160
R+ L+ V GLI+AN +L +A P N +
Sbjct: 8 RNALKHIRKQYVTLGLILANVVTHVLATLAPDALYEIGVYGMGFIPAVAFNIAELDPRLV 67
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L T +T +F H H+ SNM+ L+ FG ++ +G L Y+A A G+
Sbjct: 68 LVPEGATYVTYSFLHGSWLHLGSNMLFLWVFGDNVEDAMGHFKFLFFYLACAAAGAFV-- 125
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPV 276
HA VV S+ P +GASGAV+ ++ + L+PK ++ F +P+
Sbjct: 126 --HAL-----------VVPASQAPLIGASGAVSGVVAAYLMLHPKVRVWVLVFMRFPLPL 172
Query: 277 PAFLLGVFLIGKD-MLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
PAF+ +F +G+ ++ +I+ +SN+S AH+GG L +RR G
Sbjct: 173 PAFIPLLFWVGQQFVMLVIDRDSNVSWGAHVGGILPGGLLVLFLRRPG 220
>gi|28199124|ref|NP_779438.1| hypothetical protein PD1237 [Xylella fastidiosa Temecula1]
gi|28057222|gb|AAO29087.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 206
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 47 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSI------ 100
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L K Q +P + +LGASGAV+A++ + L P A L FIP PA V
Sbjct: 101 --LPSYIKNQK----NP-KYLSLGASGAVSAVLFAAVLLQPWA-LIVVLFIPAPAIFYAV 152
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
F +G + G+ I+ SAHL GAA
Sbjct: 153 FYVGYSIWMGRRGDDGINHSAHLSGAA 179
>gi|21242203|ref|NP_641785.1| hypothetical protein XAC1451 [Xanthomonas axonopodis pv. citri str.
306]
gi|21107623|gb|AAM36321.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 224
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H++ NMI L+FFG I MA G + Y L Y A L
Sbjct: 65 LVTYGFIHADLGHLIFNMITLFFFGRVIENV----------MAQLTGSVLTYPLFYLAAL 114
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA L VF +
Sbjct: 115 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAILYAVFYV 173
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 174 GYSLWMDRRGGDRINHSAHLAGAA 197
>gi|359789134|ref|ZP_09292090.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254992|gb|EHK57945.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 256
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMA--------------NNFTISLDNFLSGRLHTLITS 171
V +GLI N VF++ + +F + +S + + T IT
Sbjct: 19 VTFGLIGLNVLVFLITGLGSEEFTGAAVYGLGYIPSVAFDTVELSPELVIVPEDMTYITY 78
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
AF H D H+ NM+ L+ FG ++ LG L Y+ AIGG+ +
Sbjct: 79 AFLHGDFFHLAGNMLFLWVFGDNVEDALGHFRFLVFYLLCAIGGAAVH------------ 126
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VPAFL-LGVFLI 286
W+ S+ P +GASGA+ I+ + L+P+ ++ F IP +PA+L LG+++
Sbjct: 127 ---GWIAPDSQIPLIGASGAIAGIVAAYLILHPRVKIWVLAFGRIPLRIPAYLTLGLWIA 183
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+ + + G IS + H GG A+ +RRR
Sbjct: 184 FQFTMLALGGEDQISWACHAGGIITGAVLVMILRRR 219
>gi|149731148|ref|XP_001496736.1| PREDICTED: presenilin associated, rhomboid-like isoform 1 [Equus
caballus]
Length = 379
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMVRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPDGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|54261813|ref|NP_001005767.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Mus musculus]
gi|62511107|sp|Q5XJY4.1|PARL_MOUSE RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|53236985|gb|AAH83153.1| Presenilin associated, rhomboid-like [Mus musculus]
gi|74196057|dbj|BAE30581.1| unnamed protein product [Mus musculus]
gi|148665146|gb|EDK97562.1| presenilin associated, rhomboid-like [Mus musculus]
Length = 377
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+PV F G L I D +I G +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337
>gi|71276309|ref|ZP_00652587.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|170730512|ref|YP_001775945.1| hypothetical protein Xfasm12_1387 [Xylella fastidiosa M12]
gi|71162917|gb|EAO12641.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|71729933|gb|EAO32028.1| Rhomboid-like protein [Xylella fastidiosa Ann-1]
gi|167965305|gb|ACA12315.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 43 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSI------ 96
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L K Q +P + +LGASGAV+A++ + L P A L FIP PA V
Sbjct: 97 --LPSYIKNQK----NP-KYLSLGASGAVSAVLFAAVLLQPWA-LIVVLFIPAPAIFYAV 148
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
F +G + G+ I+ SAHL GAA
Sbjct: 149 FYVGYSIWMGRRGDDGINHSAHLSGAA 175
>gi|289662960|ref|ZP_06484541.1| hypothetical protein XcampvN_07693 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289670187|ref|ZP_06491262.1| hypothetical protein XcampmN_17269 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H+V NM+ L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIENV----------MAELTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA L VF +
Sbjct: 93 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAILYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|417399931|gb|JAA46946.1| Putative presenilin associated rhomboid-like isoform 2 [Desmodus
rotundus]
Length = 379
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P L F+P+ F G L I D ++ G +AHLGGA
Sbjct: 291 VPDGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMVLGWKFFDHAAHLGGA 339
>gi|348523033|ref|XP_003449028.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oreochromis niloticus]
Length = 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 104/233 (44%), Gaps = 33/233 (14%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSS-----EVVYGLIIANTAVFMLWR 142
+S+FD RA + E+ R R + Q+ +S V G+I AN VF WR
Sbjct: 120 QSYFDE----LRADWLEKVRPQKRGDIRKEINQWWNSLSEGQRTVTGIIAANAIVFCCWR 175
Query: 143 IAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG 200
+ +FM FT N S L + +I S FSH H+ +NM L+ F S LG
Sbjct: 176 VPSLQRFMIRYFTA---NPASRTLCSPMILSTFSHFSFFHMAANMYVLWSFSTSAVSMLG 232
Query: 201 PEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLD 259
E + +Y+ AG I V Y+ M++ R G P+LGASGA+ ++
Sbjct: 233 REQFMAVYLSAGVISTFVSYVC-----KMATGRFG---------PSLGASGAIMTVLAAV 278
Query: 260 IFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L + D ++ G +AHLGGA
Sbjct: 279 CTKMPEAKLAI-IFLPMFTFTAGNALKAIVAMDTAGLVLGWRFFDHAAHLGGA 330
>gi|418937850|ref|ZP_13491441.1| Rhomboid family protein [Rhizobium sp. PDO1-076]
gi|375055443|gb|EHS51700.1| Rhomboid family protein [Rhizobium sp. PDO1-076]
Length = 269
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT------------ISLDN--F 160
R+ L+ V GLI AN A+ +L + K + LD
Sbjct: 8 RNALKHIKRQYVTLGLIAANVAIHVLTLMMPEKLLEMCIYGLGFIAAVVFDFADLDPSLV 67
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L T +T AF H H SNM+ L+ FG ++ LG L Y+ A G++
Sbjct: 68 LVPEDSTYVTYAFLHASWLHFGSNMLFLWVFGDNVEDALGHWRFLFFYLVCAAAGALV-- 125
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPV 276
H LA +S+ P +GASGAV+ ++ + L+PK ++ F +P+
Sbjct: 126 --HGLLAPTSQ-----------APLIGASGAVSGVVAAYLMLHPKVRVWVLVLMRFALPL 172
Query: 277 PAFLLGVFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRRG 323
PAF+ IG+ ++ +SN+S AH+GG AL +RR G
Sbjct: 173 PAFIPLALWIGQQFFMLLFNADSNVSFGAHVGGIIAGALLVLVLRRPG 220
>gi|197102162|ref|NP_001126768.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Pongo abelii]
gi|62511102|sp|Q5R5H4.1|PARL_PONAB RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|55732584|emb|CAH92992.1| hypothetical protein [Pongo abelii]
Length = 379
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|188576423|ref|YP_001913352.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520875|gb|ACD58820.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 202
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H+V NM+ L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIESV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
A+S + +LGASGAV+A++ I L P T+ FIP PA + VF +
Sbjct: 93 AVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAIIYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRCGGDRINHSAHLAGAA 175
>gi|308198056|ref|XP_001386804.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388834|gb|EAZ62781.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT---LITSAFSHIDVEH 180
S VY LI N VF++WR+ + + I + + RL T ++ S+FSH H
Sbjct: 124 SNFVYALIALNGGVFLMWRVPALSRFVHKYAIVVKD----RLQTNWAMLGSSFSHQSFMH 179
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
+ NM L FG S+ T+G LY+ A+ S + + S
Sbjct: 180 LFVNMFVLQSFGTSLAVTVGVANFTVLYLNAAVLSSFVSIAIPTLMRSSLA--------- 230
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNS 298
+ +LGASGA+ A+M +L P A + F FFIP+P A+ L + L G ++ I
Sbjct: 231 --SASLGASGAIFAVMGAFSYLFPHAPIGF-FFIPIPGGAWTLFLGLTGWNIAGTILRWG 287
Query: 299 NISGSAHLGGAAVA 312
+AHLGG+ V
Sbjct: 288 TYDYAAHLGGSIVG 301
>gi|348582666|ref|XP_003477097.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Cavia porcellus]
Length = 379
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGVKADWLDSIRPQKK-GDLRKEINKWWNNLSDGQRTVTGIITANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L ++ S+FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCAPMLLSSFSHFSLLHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 VPDGRLAI-IFLPMLTFTAGSALKAIIALDTAGMILGWKFFDHAAHLGGA 339
>gi|332214918|ref|XP_003256582.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Nomascus leucogenys]
Length = 379
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|71731775|gb|EAO33834.1| Rhomboid-like protein [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 202
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAF 225
LIT F H D+ H++ NM+ LYFFG I E ++ + +FYL + +
Sbjct: 43 LITYGFVHADISHLLFNMVTLYFFGSMI------EAVMSELTGSLLTYPLFYLGALLVSI 96
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
L K Q + + +LGASGAV+A++ + L P A L FIP PA VF
Sbjct: 97 LPSYIKNQ-----NNPKYLSLGASGAVSAVLFAAVLLQPWA-LIVVLFIPAPAIFYAVFY 150
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAA 310
+G + G+ I+ SAHL GAA
Sbjct: 151 VGYSIWMGRRGDDGINHSAHLSGAA 175
>gi|426343052|ref|XP_004038132.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Gorilla gorilla gorilla]
Length = 379
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|440470952|gb|ELQ39991.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae Y34]
gi|440488279|gb|ELQ68010.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae P131]
Length = 709
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 82/187 (43%), Gaps = 25/187 (13%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF-FGMSIGRTLGP 201
I+ K+M NFT+S N GR TLITSAFSH D H++ NM+ L F ++ LGP
Sbjct: 127 ISQLKWMLENFTLSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSLRFGVEAALHTGLGP 186
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
+L L A+ S L A + R G LGASG V +
Sbjct: 187 LRVLLLATGAALSSSYASLWDGATRKHGADRAG-----------LGASGIVQGFLAAMAL 235
Query: 262 LNPKATLYFDFFIPVPAFL---LGVFLIGK----DMLRIIEGNSNISGS-----AHLGGA 309
P + FIP+P L G+F M R + + SGS AHLGG+
Sbjct: 236 TRPWMQVSL-MFIPIPVSLPIVWGLFTAWDFYNLHMARQNGDSPSASGSVVGYAAHLGGS 294
Query: 310 AVAALAW 316
A AL W
Sbjct: 295 AFGALYW 301
>gi|395536467|ref|XP_003770237.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Sarcophilus harrisii]
Length = 392
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 23/228 (10%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FD K + + P++ FR + W + V G+I AN VF LWR+
Sbjct: 142 QSYFDAVKADWLDSLSPQKE-GEFRKQVNKWWNTLSDGQRTVTGIIAANVFVFCLWRV-- 198
Query: 146 PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
P + N S L T ++ S FSH + H+++NM L+ F SI LG E
Sbjct: 199 PSLQRSMIKYFTSNPASKALCTPMLLSTFSHFSLLHMMANMYVLWSFSTSIVSILGKEQF 258
Query: 205 LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
+ +Y++ V F++ SK V P+LGASGA+ ++ P
Sbjct: 259 VAVYLSAG--------VISTFVSYVSK-----VATGRFGPSLGASGAIMTVLAAVCTKIP 305
Query: 265 KATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 306 EGKLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 352
>gi|410925795|ref|XP_003976365.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Takifugu rubripes]
Length = 366
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 1 MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSS-FSKHPFHPTFSWRSQQS 59
+Q+ S ++ + K + + S+ T +RP ++ S+HP P S ++
Sbjct: 31 LQQQCSFRRAYRRPESRKVEEDLSPSRTQTSEGPAPRRPTTTPHSEHPVPPN----SPRA 86
Query: 60 LSLKTHAFLFNPL-------LARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRY 112
F+F LA + L S+++ F + + + P++ +
Sbjct: 87 FGRLVRPFVFTVGFTGSTFGLAAIWQYEALKSRVQSYFDEVQADWLEKLRPQKRGDIRKQ 146
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHT-LIT 170
+ WL V G+I +N VF+ WRI A + M FT N S L T +I
Sbjct: 147 INQWWLSLSEGQRTVTGIIASNALVFLCWRIPALQRSMIRYFT---SNPASKTLCTPMIL 203
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMS 229
S+FSH H+ +NM L+ F S LG E + +Y+ AG I V Y ++
Sbjct: 204 SSFSHFSFLHMAANMYVLWSFSTSAVSMLGREQFMAVYLSAGVISSFVSYAC-----KIA 258
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL---I 286
+ R G P+LGASGA+ AI+ P+A L F+P+ F L +
Sbjct: 259 TGRFG---------PSLGASGAIMAILATVCTKMPEAKLSI-IFLPMFTFTASSALKAIV 308
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
D ++ G +AHLGGA
Sbjct: 309 AMDAAGVVLGWRFFDHAAHLGGA 331
>gi|20127652|ref|NP_061092.3| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Homo sapiens]
gi|143811433|sp|Q9H300.2|PARL_HUMAN RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial intramembrane
cleaving protease PARL; Contains: RecName: Full=P-beta;
Short=Pbeta; Flags: Precursor
gi|15559382|gb|AAH14058.1| Presenilin associated, rhomboid-like [Homo sapiens]
gi|119598718|gb|EAW78312.1| presenilin associated, rhomboid-like, isoform CRA_b [Homo sapiens]
gi|123993533|gb|ABM84368.1| presenilin associated, rhomboid-like [synthetic construct]
gi|124000479|gb|ABM87748.1| presenilin associated, rhomboid-like [synthetic construct]
Length = 379
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|397524084|ref|XP_003832040.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Pan paniscus]
Length = 379
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|114590628|ref|XP_001135897.1| PREDICTED: presenilin associated, rhomboid-like isoform 4 [Pan
troglodytes]
gi|410213876|gb|JAA04157.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410248060|gb|JAA11997.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410291898|gb|JAA24549.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410337999|gb|JAA37946.1| presenilin associated, rhomboid-like [Pan troglodytes]
Length = 379
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|404378219|ref|ZP_10983316.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
gi|294484089|gb|EFG31772.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
Length = 220
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 23/151 (15%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ + ITSAF H D+ H+ NM LYFF I G L LY+A + G+ F
Sbjct: 44 QYYRFITSAFLHADMMHLFFNMFTLYFFSRVIAAVYGVWLFLGLYLASVLAGNAF----- 98
Query: 224 AFLAMSSKRQGMWVVD--PSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
W+ PS T A+GASG V+ ++ + L P T+Y +FIPV +++
Sbjct: 99 ----------SFWLYQKRPSYT-AIGASGGVSGVLFATVALAPLQTIYL-YFIPVTSWIF 146
Query: 282 GVFLIGKD---MLRIIEGNSNISGSAHLGGA 309
ML+ +G+ N SAHLGGA
Sbjct: 147 ATLYFAYSVAMMLKPRQGD-NTGHSAHLGGA 176
>gi|313677402|ref|YP_004055398.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312944100|gb|ADR23290.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 302
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 135 TAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMS 194
+ V L+ I D +F L+ F+ R T+IT AFSH HI+ NM+ LY+FGM
Sbjct: 43 SGVEGLYAIVDAQF---TIPPDLERFIY-RPWTIITYAFSHAGFFHILMNMLVLYWFGML 98
Query: 195 IGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNA 254
+ + LG L+ LY+ GA+ G+V +++ + + ++ D + + +GAS AV A
Sbjct: 99 VSQYLGSAKLVNLYVLGALAGAVIFILAYNLIP--------FLADRTTSGMVGASAAVYA 150
Query: 255 IMLLDIFLNPKATLYFDFFIPVP-AFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVA 312
+ L P + F PV +++ V++I + + N G+ AHLGGA +
Sbjct: 151 VATASATLLPDHRFHLIFIGPVKIKYIVAVYII---LSLLNSAGPNAGGNLAHLGGAGIG 207
Query: 313 AL 314
L
Sbjct: 208 FL 209
>gi|355709305|gb|AES03547.1| presenilin associated, rhomboid-like protein [Mustela putorius
furo]
Length = 340
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I AN VF LWR+
Sbjct: 96 QSYFDGIKADWLDSIRPQKE-GDIRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 154
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 155 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 211
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 212 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 257
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 258 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 306
>gi|402489966|ref|ZP_10836759.1| rhomboid family protein [Rhizobium sp. CCGE 510]
gi|401811305|gb|EJT03674.1| rhomboid family protein [Rhizobium sp. CCGE 510]
Length = 261
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 36/218 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISL---------DNFLSGRLH------TLIT 170
V GLI N AV++L + + A T+ L D L+ L T +T
Sbjct: 19 VTLGLIALNIAVWLLTSLESEQ-AAQATTVGLGYIPAIAFGDAVLAQGLEIVPEPLTYLT 77
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H H+ SNMI L+ FG ++ +G L Y+ A G+ + H LAM+S
Sbjct: 78 YAFVHSGFWHLASNMIFLWVFGDNVEDAMGHLRFLIFYVVCAAAGA----LCHGLLAMAS 133
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLI 286
+ +GASGA++ ++ + L+P+ ++ F +P+PAF+ + I
Sbjct: 134 QAA-----------LVGASGAISGVVAAYVMLHPRVKVWVLVFFRLPLPLPAFIPLLLWI 182
Query: 287 GKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
G+ L + I + ++S AH+GG AL +RR G
Sbjct: 183 GQQFLMLAIAPDGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|294626557|ref|ZP_06705155.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664949|ref|ZP_06730262.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599124|gb|EFF43263.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605282|gb|EFF48620.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 202
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H++ NMI L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLIFNMITLFFFGRVIENV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA L +F +
Sbjct: 93 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAILYALFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|358010724|ref|ZP_09142534.1| hypothetical protein AP8-3_04340 [Acinetobacter sp. P8-3-8]
Length = 205
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
+ N ++ G+ +T F H D H+ NM LYFFG SI E+ + Y
Sbjct: 27 IMNRLIFNISAIKQGQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRSI------EWFFRDY 80
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
++G +G +FY A+ S Q + + +LGASGAVNA++ I +P +
Sbjct: 81 LSG-MGFVLFYCSAIIVAAIPSYIQ---YRNLNSYRSLGASGAVNAVLFSAILFDPWGMI 136
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN-ISGSAHLGGAAVAAL 314
Y +FIP+PA + G + M I G+S I AH+ GA L
Sbjct: 137 YI-YFIPIPAIIFGTIYLCYSMYAIRSGHSPLIDHRAHITGAVYGFL 182
>gi|86142879|ref|ZP_01061301.1| putative transmembrane rhomboid family protein [Leeuwenhoekiella
blandensis MED217]
gi|85830324|gb|EAQ48783.1| putative transmembrane rhomboid family protein [Leeuwenhoekiella
blandensis MED217]
Length = 297
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 24/200 (12%)
Query: 120 QYGSSEVVYGLIIANTAV---FML--WRIADPKFMANNFTISLDNFLSGRL----HTLIT 170
Q+ ++ +V LI+ N V FML W + +++ F++ D GRL +L+T
Sbjct: 9 QFKTANIVVKLIVINVLVWIGFMLLEWMLNSGAILSHWFSLPTD---LGRLIIQPWSLLT 65
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAFLAMS 229
AF H HI NM+ LY+FG + + L +Y+ GA+ GG +F L Y+ F
Sbjct: 66 YAFLHAGFWHIFWNMLILYWFGQIVLNLFTEKRFLTIYLLGALSGGVLFVLAYNLFP--- 122
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
V+ S +GAS AV AIM+ P + FF V + +GVF++ D
Sbjct: 123 -------VLITSSAYLVGASAAVRAIMIFIAAYTPNTEVRVIFF-NVKLWHIGVFVVLTD 174
Query: 290 MLRIIEGNSNISGSAHLGGA 309
+++I + AH+GGA
Sbjct: 175 LIQIPSSGNAGGLLAHVGGA 194
>gi|425744985|ref|ZP_18863040.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
gi|425490581|gb|EKU56881.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
Length = 205
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ IT F H D H++ NMI L+FFG +I + ++ + G +FYL
Sbjct: 43 GQYDRFITHGFIHADGTHLLFNMITLFFFG-NIIESFYRQFFYDM------GFVLFYLGG 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L K + + +LGASGAV+A++ I P L F FFIPVPA +
Sbjct: 96 LIVAILPSYLKHR-----HDAHWASLGASGAVSAVLFAYILFQPW-NLIFVFFIPVPAII 149
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + GNSNI+ SAHL GAA +
Sbjct: 150 FAILYVAYSIWSGKRGNSNINHSAHLWGAAYGVVV 184
>gi|384419943|ref|YP_005629303.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462856|gb|AEQ97135.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 202
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
L+T F H D+ H+V NM+ L+FFG I MA G + Y L Y A L
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIESV----------MAQLTGSVLTYPLFYLAAL 92
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+S + +LGASGAV+A++ I L P T+ FIP PA + VF +
Sbjct: 93 VVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPW-TIILVLFIPAPAIIYAVFYV 151
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
G + G I+ SAHL GAA
Sbjct: 152 GYSLWMDRRGGDRINHSAHLAGAA 175
>gi|375148562|ref|YP_005011003.1| rhomboid family protein [Niastella koreensis GR20-10]
gi|361062608|gb|AEW01600.1| Rhomboid family protein [Niastella koreensis GR20-10]
Length = 275
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS F H++ H++ NM+G+YFF + L L +Y A +GG++ L+ +
Sbjct: 50 LVTSGFLHVNWMHLIFNMLGVYFFAGLLIAQLDWYGFLLVYFASMVGGNLLSLIIY---- 105
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
K QG + ++GASGAVN + I L+P ++F +P +L G+ IG
Sbjct: 106 ---KNQGDY-------TSVGASGAVNGGIFATIALDPGIRIFF-----LPGWLFGLLYIG 150
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + N+ AHLGGA + +
Sbjct: 151 LTIYGVRSKRDNVGHEAHLGGALIGMVV 178
>gi|256425736|ref|YP_003126389.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040644|gb|ACU64188.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 280
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGL 188
LI+ N AV ++ + N ++ +D L + + LITS F H+ H+ NM+ L
Sbjct: 11 LIVVNIAVS--YKGLKDRSFFNKYSFEVDRILIEKDYKRLITSGFLHVSWMHLFFNMVSL 68
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F S+ LGP L LY A +GG++ L+ H + G + A+GA
Sbjct: 69 FLFSNSLEVKLGPTAYLTLYFASLVGGNLLSLLIH-------RNHGDY-------SAVGA 114
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIP--VPAFLLGVFLIGKDMLRIIEGNSNISGSAHL 306
SGAV ++ I L P L F F IP +P + G + + I NI AH+
Sbjct: 115 SGAVCGVIFASIALFPAMRLGF-FGIPFSIPGWAYGSLFVLYSIYGIKSRRDNIGHEAHM 173
Query: 307 GGAAVAALA 315
GGA + +
Sbjct: 174 GGALIGMVV 182
>gi|15838777|ref|NP_299465.1| hypothetical protein XF2186 [Xylella fastidiosa 9a5c]
gi|9107328|gb|AAF84985.1|AE004032_4 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 206
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
LIT F H ++ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 47 LITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSI------ 100
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L K Q +P + +LGASGAV+A++ + L P A L FIP PA V
Sbjct: 101 --LPSYIKNQK----NP-KYLSLGASGAVSAVLFAAVLLQPWA-LIVVLFIPAPAIFYAV 152
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
F +G + G+ I+ SAHL GAA
Sbjct: 153 FYVGYSIWMERRGDDGINHSAHLSGAA 179
>gi|348500832|ref|XP_003437976.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oreochromis niloticus]
Length = 387
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G+I N AV WRI + M FT + + R + S+FSH + H+V+
Sbjct: 164 KTVTGIIALNAAVLCCWRIPSMQRSMLKYFTSNPAS--KTRCLPMALSSFSHYSIIHMVA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM L+ F I LG E L +Y++ G V +V + A + +
Sbjct: 222 NMYVLWIFSSGIVSLLGKEQFLAVYLS---AGVVSTMVSYTCKAATGRLY---------- 268
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNI 300
P+LGASGAV A++ P+A L F+P+ F G L+ D ++ G
Sbjct: 269 PSLGASGAVMAVLAAICSKMPEAKLGI-IFLPMVTFTAGTALKVLVAADTAGLLLGWRLF 327
Query: 301 SGSAHLGGA 309
+AHLGGA
Sbjct: 328 DHAAHLGGA 336
>gi|343426149|emb|CBQ69680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 464
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPK--------FMANNFTISLDNFLSGRLHTLITSAFS 174
+ +VV +I NTAVF LW IA + +M NF + S R HTL+TS +S
Sbjct: 223 AKQVVVPVIAVNTAVFALWTIASRRGGAGGMWRWMTRNF---VHRPSSARTHTLLTSVYS 279
Query: 175 HIDVEHIVSNMIGLYFFGMS---------IGRTLGPEYLLKLYMAGAIGGSVFYLVY-HA 224
H H + N + L+ G S G T+ L ++A +F H
Sbjct: 280 HQTFVHYLFNNMALWSIGGSALFVAAHHTAGATIPEASPLAHFLAFFTAAGLFAATASHI 339
Query: 225 FLAMSSKR----QGMWVVDPS--RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
A+ +R +G+ + R +LGASGAV A ++L F P A L F+P +
Sbjct: 340 LTALRFRRTATLRGLAAAKTTIGRHASLGASGAVYATLVLPAFAFPDAQLGI-LFVPFVS 398
Query: 279 FLLGV---FLIGKDMLRIIEGNSNISGSAHLGGAA 310
F +GV L+ D+ ++ G +AHL GAA
Sbjct: 399 FPIGVGVAGLVAVDVAGLVRGWKTFDHAAHLAGAA 433
>gi|254295337|ref|YP_003061360.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254043868|gb|ACT60663.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 208
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ + LI AN A F L ++ KF N+ + D + + ++TS F H+ H++
Sbjct: 8 APITLALIAANVA-FSLIGFSNEKFFRANYLLVGDIVQKHQWYRVLTSGFLHVSPGHLLL 66
Query: 184 NMIGLYFFGMSIG-RTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ L+FFG + + LGP L +Y I G A+ + + R+ +D S
Sbjct: 67 NMLTLFFFGPYLEIKLLGPTGYLLVYFVSLIAGG-------AWAVLENYRR----LDYS- 114
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
A+GASGAV+ ++ P + +Y IP+PA + GV I +S I
Sbjct: 115 --AVGASGAVSGALISFCMFEPFSLIYLFMIIPIPAIVFGVAFISYSAFASGNEDSKIGH 172
Query: 303 SAHLGGA 309
AHLGGA
Sbjct: 173 EAHLGGA 179
>gi|388583817|gb|EIM24118.1| hypothetical protein WALSEDRAFT_42280 [Wallemia sebi CBS 633.66]
Length = 216
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 125 EVVYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
V G+I N+ +F W++ +P FM +F + D LHT++TS FSH + H+
Sbjct: 6 RTVAGIIALNSVIFFAWQVPNPVLRSFMKRHFLHAHDT----PLHTMLTSVFSHRSIAHL 61
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA---MSSKRQGMWVV 238
NM+ LY FG L ++L K + G+ Y +L+ +S+
Sbjct: 62 GFNMLALYSFG-----PLSFKFLEK--QETELEGTSVYKWLALYLSAGLLSNLASTAATK 114
Query: 239 DPSRT--PALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLGVFLIGKDMLR 292
RT P+LGASGAV + +++ + NP + FF P+ +L ++G D++
Sbjct: 115 YTQRTLMPSLGASGAVYSTLVMSAYSNPDIKVNLIFFPWFGFPISTGVLA--MVGFDIVG 172
Query: 293 IIEGNSNISGSAHLGGAA 310
++ G + +AHLGGA
Sbjct: 173 LLRGWKLLDHAAHLGGAG 190
>gi|449126889|ref|ZP_21763164.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
gi|448945092|gb|EMB25967.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
Length = 209
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAM 228
T F H D H+ NM+ L+FFG+ + R +G E++L + G I G + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIDGVLSFLVYAA---- 113
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
G +++ +GASGA+ ++LL + P + +Y IPVPA LL ++G
Sbjct: 114 ----TGFYIIS-----LVGASGAIFGVLLLYAVIYPNSVVYLWAVIPVPAPLL---ILGY 161
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
++ +I S G AHL W IR R
Sbjct: 162 AVIELISIFSVGDGVAHLTHFIGLLAGWVYIRIR 195
>gi|384487892|gb|EIE80072.1| hypothetical protein RO3G_04777 [Rhizopus delemar RA 99-880]
Length = 157
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S + + LI N+ VF+ W+I + + + + L + R TL+TS FSH + H
Sbjct: 4 SEKTLSTLIALNSIVFLAWQIPRLTPLMSQWFMHLPG--TKRNVTLLTSCFSHQEFFHFT 61
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+GL+ FG I G E + +Y++ IG +V + + LA+ + R M
Sbjct: 62 LNMVGLWSFGRVIHDHFGREQFVAMYLSAGIGANV--VSHTCSLALRNSRPLM------- 112
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
P+LGASGA+ +++ L+P +++ F+P+ LG + +D
Sbjct: 113 -PSLGASGAIYSLVASTAILHPNSSISL-IFLPMIPIKLGHIWLEQD 157
>gi|70953902|ref|XP_746024.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526521|emb|CAH77240.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 229
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPK-----------------------FMANNFT 154
+ Y S V Y LI + V+ LW A P+ FM +F
Sbjct: 7 IHHYNKSPVTYSLIFLHFFVYFLWMNAKPRQMSYNYFSPTPIRSHSAPLLTSEFMYKHFC 66
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 67 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEALINSKNFFLTYIVSGII 126
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
S ++Y + G + LGASG++++I+ F++P +Y +
Sbjct: 127 SSYIQILYQK-----NSNYGY-----NNVYVLGASGSISSILATYTFIHPNHKIYLYGVL 176
Query: 275 PVPAFLLGVFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRGF 324
+P + F ++ II N +I ++HL G + L + R F
Sbjct: 177 GLPLAVFSSFYFLNELYSIISNKNDDIGHASHLTGMVLGILYYYSYVNRKF 227
>gi|21230863|ref|NP_636780.1| hypothetical protein XCC1407 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769138|ref|YP_243900.1| hypothetical protein XC_2831 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188992286|ref|YP_001904296.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
campestris str. B100]
gi|384427336|ref|YP_005636694.1| cytoplasmic membrane protein [Xanthomonas campestris pv. raphani
756C]
gi|21112470|gb|AAM40704.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574470|gb|AAY49880.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734046|emb|CAP52252.1| Putative Rhomboid family membrane protein [Xanthomonas campestris
pv. campestris]
gi|341936437|gb|AEL06576.1| cytoplasmic membrane protein [Xanthomonas campestris pv. raphani
756C]
Length = 202
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
LIT F H D+ H+V NMI L+FFG I R G L+ GA+ S+
Sbjct: 43 LITYGFIHADLGHLVFNMITLFFFGRYIEDVMTRLTGSVLTYPLFYLGALIVSI------ 96
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L K Q +P+ +LGASGAV+A++ I L P T+ FIP PA + V
Sbjct: 97 --LPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILLKPW-TIILVLFIPAPAIIYAV 148
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
F +G + G I+ SAHL GAA +
Sbjct: 149 FYVGYSLWMDRRGGDRINHSAHLAGAAFGVM 179
>gi|374588008|ref|ZP_09661098.1| Rhomboid family protein [Leptonema illini DSM 21528]
gi|373872696|gb|EHQ04692.1| Rhomboid family protein [Leptonema illini DSM 21528]
Length = 219
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
I + FSH + H++ NMI YFF I +GP ++L LY + + A AM
Sbjct: 64 IYAHFSHANWMHLLFNMITFYFFAPVIVEQMGPIFMLALYGVAGLASDL------AVYAM 117
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF---IPVPAFLLGVFL 285
K DP R LGASG+V+ I+ I L P+ LY F IP P F +
Sbjct: 118 RHK-------DP-RYACLGASGSVSGILFASIILYPQMELYLMFIPIGIPGPVFAIAYLA 169
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ M R G +S AH+GG A+A LA
Sbjct: 170 LSFYMAR--RGGDGVSHEAHIGG-ALAGLA 196
>gi|449487060|ref|XP_004157483.1| PREDICTED: uncharacterized protein LOC101232438 [Cucumis sativus]
Length = 185
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 63 KTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFRYRW-- 114
K H F P++ +RF + ++ + KS + + LF F + F F ++W
Sbjct: 66 KIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFVHQWGG 125
Query: 115 -RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMA 150
RSW ++ +EVV GLIIAN AVF+LWRIADP FM+
Sbjct: 126 RRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMS 162
>gi|430745812|ref|YP_007204941.1| hypothetical protein Sinac_5094 [Singulisphaera acidiphila DSM
18658]
gi|430017532|gb|AGA29246.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 306
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEH 180
G + +I+ N VF L I + + N F S D F G + L+T+ F H V H
Sbjct: 21 GLAPATKAIIVINVIVFFLQPILQDRGLWNYFIASSDGIFRHGYVWQLLTATFMHAGVYH 80
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
++ NM+ L+ G + G + Y+ A+ ++ ++ FL
Sbjct: 81 LLWNMVFLWMVGREMESFYGTRDFVAFYLCAAVLSTLGWVAIDTFLGHHGN--------- 131
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII-EGNSN 299
LGASGA+ A++++ P + F +PV +LL V + D +++ + S
Sbjct: 132 ----MLGASGAIMAVVVVYAMYYPHREILLFFVLPVQMWLLVVIYLAHDAYQLLTQPASE 187
Query: 300 ISGSAHLGGAAVAAL 314
I+ ++HL GAA L
Sbjct: 188 IAVASHLSGAAFGYL 202
>gi|449304247|gb|EMD00255.1| hypothetical protein BAUCODRAFT_64340 [Baudoinia compniacensis UAMH
10762]
Length = 254
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 103/229 (44%), Gaps = 34/229 (14%)
Query: 121 YGSSE-VVYGLIIANTAVFMLWRIAD-------PKFMANNFTISLDNFLSGRLHTLITSA 172
Y S+E V++ LI N AVF W+ A K + N T+SL NF +GR TL+T+A
Sbjct: 31 YTSAENVIWTLISLNIAVFGTWQYARYTQNSKLIKQLKENATLSLANFEAGRYWTLLTAA 90
Query: 173 FSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
FSH + HI+ NM+ L FG +S +G ++L L + A+ GS +L
Sbjct: 91 FSHTEWWHILFNMMSLRAFGSILSFFPGVGGGHILALSVGSALAGS------GGWLYQQK 144
Query: 231 KRQGMWVVDPSR----TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVF 284
R+ + + + P ASGAV + L P A + FIPV P ++ V
Sbjct: 145 AREDLLKITGAGGQIFGPGTHASGAVLGMGAAATCLMPFAPINI-LFIPVAIPLWVATVG 203
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL-----------AWARIRRR 322
D + S+I +AHL G+ L W +RRR
Sbjct: 204 YAALDTYLLGSKTSHIGHAAHLSGSLFGLLYYFTNMRGFGGVWWMLRRR 252
>gi|209551136|ref|YP_002283053.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424916599|ref|ZP_18339963.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|209536892|gb|ACI56827.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|392852775|gb|EJB05296.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 265
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNMI L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHSGFWHLASNMIFLWVFGDNVEDAMGHLRFLIFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TMTSQ-----------APLVGASGAISGVIAAYVLLHPRVKVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + + + ++S AH+GG AL +RR G
Sbjct: 179 LLWIGQQFFMLAVAPDGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|344282589|ref|XP_003413056.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial-like [Loxodonta
africana]
Length = 519
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN V LWR+
Sbjct: 129 QSYFDGLKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVIVCCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMVRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMAVYLSAGVISNFVSYMC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L +P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-ILLPMFTFTAGNALKAIIAMDTAGLILGWRFFDHAAHLGGA 339
>gi|389628520|ref|XP_003711913.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
gi|351644245|gb|EHA52106.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
Length = 324
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 88/192 (45%), Gaps = 26/192 (13%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF-FGMSIGRTLGP 201
I+ K+M NFT+S N GR TLITSAFSH D H++ NM+ L F ++ LGP
Sbjct: 127 ISQLKWMLENFTLSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSLRFGVEAALHTGLGP 186
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
+L L A+ S Y + ++++ G + LGASG V +
Sbjct: 187 LRVLLLATGAALSSS-----YASLWDGATRKHG------ADRAGLGASGIVQGFLAAMAL 235
Query: 262 LNPKATLYFDFFIPVPAFLLGVF--LIGKDM--LRIIEGNSN---ISGS-----AHLGGA 309
P + FIP+P L V+ D L I N + SGS AHLGG+
Sbjct: 236 TRPWMQVSL-MFIPIPVSLPIVWGLFTAWDFYNLHIARQNGDSPSASGSVVGYAAHLGGS 294
Query: 310 AVAALAW-ARIR 320
A AL W R+R
Sbjct: 295 AFGALYWFVRLR 306
>gi|150397729|ref|YP_001328196.1| rhomboid family protein [Sinorhizobium medicae WSM419]
gi|150029244|gb|ABR61361.1| Rhomboid family protein [Sinorhizobium medicae WSM419]
Length = 263
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ A G+ H L
Sbjct: 75 TFLTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGA----FAHGLL 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPVPAFLLG 282
++S+ P +GASGA++ ++ L+PK ++ F +P+PA +
Sbjct: 131 DLASE-----------APLIGASGAISGVVAAYFLLHPKVRVWVLVLFRIPLPLPAAIPL 179
Query: 283 VFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRRG 323
F IG+ ++ + +S +S SAH+GG L +RRRG
Sbjct: 180 AFWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRG 221
>gi|397690913|ref|YP_006528167.1| hypothetical protein MROS_1922 [Melioribacter roseus P3M]
gi|395812405|gb|AFN75154.1| Hypothetical protein MROS_1922 [Melioribacter roseus P3M]
Length = 306
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
++ IT F H HI+ NM L+ FGM I +GP L Y+A IG +F ++
Sbjct: 77 QIWQFITYQFMHGSFTHILFNMFMLWMFGMEIANLMGPRKFLIFYLACGIGAGLFQILLS 136
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L S P +GASGAV IM+ P + F F IP+ A L
Sbjct: 137 PLLGSVS------------APTIGASGAVFGIMIAFAMFFPDRYILFYFLIPIKAKYLIA 184
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
L+ + + + E + ++ AH+GGA L
Sbjct: 185 ILVLFEFVSVNE-PTIVAHLAHIGGAVTGFL 214
>gi|384252113|gb|EIE25590.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
R+ + V+Y +I AN V +LWRI A FM N + L L R T +TS FSH
Sbjct: 3 RKQDTKRVLYSIIAANVGVSLLWRIPALQGFMLRNAVLQLPP-LRTRPWTFLTSNFSHAG 61
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H+ NM+ L FG + G + Y++ + S+ A+LA + G
Sbjct: 62 TLHLAVNMLALSSFGSVVAEDFGAYHFAAFYLSAGLASSM-----TAYLARLRRGSG--- 113
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGVFLIGKDMLRIIE 295
+LGASGAV A ++P A F F +P L L L+ D ++
Sbjct: 114 -----GRSLGASGAVYACFAATALMHPDAQGAFIFLPGIPIRLGDLLPLLMCFDAAGVLL 168
Query: 296 GNSNISGSAHLGGA 309
G + HLGGA
Sbjct: 169 GWRYLDHFGHLGGA 182
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTI---SLDNFLSG--RLHTLITSAFSHIDVEHIVSN 184
L+IAN AVF L +F+A F + +L SG + ++TSAF H V HI+ N
Sbjct: 12 LLIANVAVFFL------QFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVTHIMFN 65
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR-T 243
M+ LY FG +I RT G Y AI S+ L +W P++
Sbjct: 66 MLALYMFGGTIERTFGAREFTVYYFVCAIVASLLQLAV------------LWFFPPAQYG 113
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
P LGASGA+ ++L L P + F IP+PA+L + ++ + G G
Sbjct: 114 PTLGASGAIFGLLLAFGMLYPHEKVMLIFLPIPMPAWLFVILYAAAELTMGVTGIE--PG 171
Query: 303 SAH 305
AH
Sbjct: 172 VAH 174
>gi|333368401|ref|ZP_08460601.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332977324|gb|EGK14112.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 206
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G + IT F H D H++ NM LYFFG ++ R + +GG F VY
Sbjct: 43 GEWYRFITHGFIHADSTHLLFNMFTLYFFGRAVER----------FFNQFLGGFGFLAVY 92
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ ++ + + + +LGASG V+AI+ I + P + LY +P+PA +
Sbjct: 93 LGAIIVAMIPSYLQHKNDANYRSLGASGGVSAILFSFILMAPWSMLYLFAVLPIPAIVFA 152
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + +GNSNI+ AHL G LA
Sbjct: 153 IAYVAYSVYANNKGNSNINHLAHLWGGGFGVLA 185
>gi|224000738|ref|XP_002290041.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973463|gb|EED91793.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 314
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISLDNFL-SGRLHTLITSAFSH 175
Y S ++ +++ +F+LW+ K + N+F S N + R + LITSAFSH
Sbjct: 96 YKLSPTLWNGTLSSIVLFLLWQFPTSSKVSKILQNHFVCSRRNVVVKKRFYALITSAFSH 155
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG--AIGGSVFYLVYHAFLAMSSKRQ 233
HI NM FG S+ + L + + G A+ GS+ +L
Sbjct: 156 ASFHHIAVNMYAFLNFGPSVKQVLASQGVALWPFVGLAAVFGSLVFL------------- 202
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPV--PAFLLGVFLIG--- 287
+D +G SG A++ D + P L FIP+ PA+ L + L+G
Sbjct: 203 ---ALDNGSGSCIGLSGVTLALLAFDSMVYPSKELRMIVSFIPIHLPAYYLFIGLLGFSV 259
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
++ ++ G SN++ S HLGG L + RR
Sbjct: 260 AGVMGLVGGRSNVAHSTHLGGLVFGRLFYEAYRR 293
>gi|449134698|ref|ZP_21770168.1| Rhomboid family protein [Rhodopirellula europaea 6C]
gi|448886671|gb|EMB17072.1| Rhomboid family protein [Rhodopirellula europaea 6C]
Length = 301
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 11/212 (5%)
Query: 104 ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
ER ++ R W R ++ LI N AVF++ I + + F IS + L
Sbjct: 5 ERDYS--RTERTPWDRIENPLSMIKVLIGINVAVFLV-DIVLGDHLIHWFGISGQSLLRP 61
Query: 164 RL-HTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L +T F H D+ HI+ NM L+ FG + + LG + L+ Y+ I G + +
Sbjct: 62 WLWFQTLTYGFLHNTEDILHILFNMFLLFVFGRPVEQRLGGQEFLRFYLIAVIAGGIVGM 121
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+Y A+S G + P +GASGAV A+M+L P + F F +PV A++
Sbjct: 122 LYPC--AISLFHTGQLSPEIIGVPTIGASGAVIAVMVLFACYFPHQEVLFMFVLPVKAWV 179
Query: 281 LGVFLIGKDMLR---IIEGNSNISGSAHLGGA 309
L L+ D++ + S+ + HL GA
Sbjct: 180 LATVLVLFDLISAFGLFGSASSTAFEVHLAGA 211
>gi|399028335|ref|ZP_10729595.1| putative membrane protein [Flavobacterium sp. CF136]
gi|398074069|gb|EJL65225.1| putative membrane protein [Flavobacterium sp. CF136]
Length = 212
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +++S F H D+ H+ NM+ L+FF ++ LG + +Y+ I GS+ ++
Sbjct: 38 SGEQIRMLSSGFLHADIMHLAFNMLTLWFFAPTVIDYLGNFSFILVYVGSLIFGSLLTML 97
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+H + A+GASGAV ++ I L P L IP+PA+L
Sbjct: 98 FHK--------------NDYSYRAVGASGAVTGVLYSAILLQPDMMLGIFGIIPIPAYLF 143
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
G+ + + + N NI +AH GGA
Sbjct: 144 GILYLLYSIYGMKAKNDNIGHTAHFGGAV 172
>gi|325921761|ref|ZP_08183583.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
gi|325547748|gb|EGD18780.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
Length = 202
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAF 225
L+T F H D+ H+V NMI L+FFG I E ++ + +FYL + +
Sbjct: 43 LVTYGFIHADLGHLVFNMITLFFFGRYI------EDVMTRLSGSVLTYPLFYLSALVVSI 96
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
L K Q +P+ +LGASGAV+A++ I L P T+ FIP PA + VF
Sbjct: 97 LPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILLKPW-TIILVLFIPAPAIIYAVFY 150
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 151 VGYSLWMDRRGGDRINHSAHLAGAAFGVM 179
>gi|328541739|ref|YP_004301848.1| peptidase, S54 (Rhomboid) family [Polymorphum gilvum SL003B-26A1]
gi|326411491|gb|ADZ68554.1| Peptidase, S54 (Rhomboid) family, putative [Polymorphum gilvum
SL003B-26A1]
Length = 231
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 49/225 (21%)
Query: 126 VVYGLIIANTAVFMLWRIA---------------------DPKFMANNFTISLDNFLSGR 164
V + LI+AN A F+L + A D K +A + + N
Sbjct: 19 VTWSLILANCAAFLLLQGAGLGETAQASAYSYGLIPSVLFDIKDLAPDLAVVPGN----- 73
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
TL+T AF H DV H+ NM+ L+ FG ++ LG L Y+A A+ G Y
Sbjct: 74 -ATLVTYAFLHADVWHLAGNMLFLWVFGDNVEDALGHLRYLLFYLACAVAGGFAYA---- 128
Query: 225 FLAMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPA- 278
+DP S P +GAS A I+ + L+P+ ++ +P+PA
Sbjct: 129 ------------ALDPNSDVPLIGASAAGAGIVAAYLILHPRVRVWVLVLGRVPLPIPAL 176
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ LG ++ + + +S ++ SAH+GG A A+ +RRRG
Sbjct: 177 WALGAWIAFQVFNVLFVQDSQVAWSAHVGGIAAGAVLVVFLRRRG 221
>gi|402223532|gb|EJU03596.1| hypothetical protein DACRYDRAFT_64551 [Dacryopinax sp. DJM-731 SS1]
Length = 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 39/212 (18%)
Query: 130 LIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
++ N A+FM W+I + FMA++F L + LSG+ +TL+TSAFSH + H+ NM L
Sbjct: 157 IVCLNAAIFMGWQIPILRHFMASHF---LHSPLSGKSYTLLTSAFSHQGLVHMGFNMFAL 213
Query: 189 YFFGMSIGRTLG---------PE--YLLKLYMAGAIGGSVFYLVYHAFLA---------- 227
FG + LG PE Y + +GG L+ H A
Sbjct: 214 VSFGSAAFDWLGTQQAHVERQPESTYFYHAFSFYVLGGLFSSLLSHVVAARFRFPRMVAA 273
Query: 228 -----MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPA 278
M+ G S P+LGASGA+ A + L P+AT+ F +P+ A
Sbjct: 274 LTAGNMTGATNG---ALTSILPSLGASGAIYATVTLSALALPEATVSFILLPWVQVPISA 330
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + L+ D++ ++ G AHLGGAA
Sbjct: 331 GVGSLVLL--DVIGVMRGWRTFDHWAHLGGAA 360
>gi|343429100|emb|CBQ72674.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 378
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 126 VVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFS 174
V+Y +I N VF W + +DP+ FM+ NF N GR T++TS S
Sbjct: 174 VLYTIIALNVLVFGSWLYAAESMRKFSDPRMYLFMSKNFLSGYLNVQQGRWWTMLTSCVS 233
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H ++H + NM+ L F + GP + LY + ++ G
Sbjct: 234 HETLDHFLLNMVSLAFMAPPVLALTGPTTFVLLYFGAGV------------VSSVVSMVG 281
Query: 235 MWVVDPSRTP-----ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
+V P + + GASG+V AIM ++P+AT F +P PA+L + D
Sbjct: 282 KALVPPDKESRFSAFSHGASGSVYAIMSAFACVHPRATFLVFFAVPAPAWLCVSGIFAWD 341
Query: 290 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ + SA G +A +A+ R RG
Sbjct: 342 LWHAAGTPKGRTDSASHVGGILAGIAFWRFGLRG 375
>gi|68072603|ref|XP_678215.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498611|emb|CAI00558.1| conserved hypothetical protein [Plasmodium berghei]
Length = 411
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPK-----------------------FMANNFT 154
+ Y S V Y LI + V+ LW A P+ FM F
Sbjct: 189 MHHYNKSPVTYSLIFLHFFVYFLWINAKPENMSYSYFSPAPTKSHSFPLLTSEFMYKYFC 248
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 249 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGII 308
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
S ++Y S + ++V LGASG++++I+ F++P +Y +
Sbjct: 309 SSYIQILYQK--NSSYGYKNVYV--------LGASGSISSILATYTFIHPNHKIYLYGVL 358
Query: 275 PVPAFLLGVFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRRGF 324
+P L F ++ II N NI ++HL G + L + + F
Sbjct: 359 GLPLALFSSFYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKF 409
>gi|336173957|ref|YP_004581095.1| rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
gi|334728529|gb|AEH02667.1| Rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
Length = 215
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+ S+ + G +++S F H++++H++ NM LYFF + LG + +Y+
Sbjct: 29 EKYKFSIGAIIRGEKIRMLSSGFLHVNLQHLIFNMFSLYFFAPVVVGMLGDINFVIIYLG 88
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+ G+V +H + A+GASGAV I+ I L P +LY
Sbjct: 89 SLLLGNVLSYYFHK--------------NEYHYTAVGASGAVMGIIYSAILLQPGMSLYL 134
Query: 271 DFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
F IP+PA++ GV + + + N NI AH GGA
Sbjct: 135 FFIPIPIPAYVFGVGYLLYSIYGMKARNDNIGHDAHFGGA 174
>gi|146422679|ref|XP_001487275.1| hypothetical protein PGUG_00652 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
++Y +I N AVF++W++ + + + + +S ++ SAFSH HI+ NM
Sbjct: 131 LIYTIIALNGAVFLMWKLPQMVRYLTRYGLLVKDNVSN--WAMVGSAFSHQSFSHILINM 188
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L FG ++ +G E LY+ A+ S F+ + LA SS T +
Sbjct: 189 FVLQSFGSTLVSMIGVENFTSLYLNSAVISS-FFSILIPVLARSSL----------LTAS 237
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNSNISGS 303
LGASGA+ +++ +L PKA L F FFIPVP A+ L + I + I+ +
Sbjct: 238 LGASGAIFSVVGAFSYLLPKAPLAF-FFIPVPGGAWFLFLGTIAYNAAGIVFRWGVHDYA 296
Query: 304 AHLGGAAVA-ALAW 316
AHLGG+A A W
Sbjct: 297 AHLGGSAAGIAYGW 310
>gi|436833411|ref|YP_007318627.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384064824|emb|CCG98034.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 306
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T +F+H D HI+ NM+ LY+FG I LG L+ LY+ GA+GG + Y V + +
Sbjct: 71 TVLTYSFTHYDPFHILWNMVFLYWFGRLIEEYLGSRRLVGLYIMGALGGGLCYFVAYNLV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ + G V+ LGASGA ++ + L P T + F PV + +F +
Sbjct: 131 PYFNNQVGGQVL-------LGASGAALSVAVGAATLLPNYTFHLLFIGPVRIKYIVLFFV 183
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVA 312
+ GN+ AH+GGA V
Sbjct: 184 VLSFFNSV-GNNAGGNLAHIGGALVG 208
>gi|449117125|ref|ZP_21753569.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
gi|448952389|gb|EMB33193.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
Length = 209
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAM 228
T F H D H+ NM+ L+FFG+ + +G E++L + G IGG + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVECKIGTKEFILYYLLIGTIGGILSFLVYAA---- 113
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
G + + +GASGA+ ++LL L P + +Y IPVPA LL ++G
Sbjct: 114 ----TGFYTIT-----LIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLL---ILGY 161
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
++ +I S G AHL W IR R
Sbjct: 162 AVIELISIFSIGDGVAHLTHFIGLIAGWVYIRIR 195
>gi|325106150|ref|YP_004275804.1| rhomboid family protein [Pedobacter saltans DSM 12145]
gi|324974998|gb|ADY53982.1| Rhomboid family protein [Pedobacter saltans DSM 12145]
Length = 250
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 39/195 (20%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--- 220
R+ + T F H D+ HI SNM+ L+ FG + LG + L+ Y+ +G + +L
Sbjct: 56 RIWQIFTHLFMHGDIMHIFSNMLALWMFGSVLENYLGSKRFLQYYIITGLGAACLHLGVQ 115
Query: 221 --------------VYHAFLAMSSK--RQGMWVVDPSRT--------PALGASGAVNAIM 256
H L + +QGM DP P +GASGAV ++
Sbjct: 116 YVEVQALKQNLSAATIHEVLTNGANVVKQGMMYSDPKAAAYTAALFFPTVGASGAVFGLL 175
Query: 257 LLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG-----NSNISGSAHLGGAAV 311
L L P A +Y FF+P+ A F+I + + G + N++ AH+GG
Sbjct: 176 LAFGMLFPNALIYLYFFLPIKA---KYFVILYGLFELYSGIANNPSDNVAHFAHIGGMIF 232
Query: 312 AAL---AWARIRRRG 323
+ W RIRR G
Sbjct: 233 GYILIKIW-RIRRPG 246
>gi|430005333|emb|CCF21134.1| conserved membrane protein of unknown function [Rhizobium sp.]
Length = 248
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H+D H+ SNM+ L+ FG ++ LG L Y+ A G++ HA +
Sbjct: 74 TYVTYAFIHLDFWHLASNMVFLWVFGDNVEDALGHVRFLVFYLLCAAAGAML----HAVI 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPVPAFL-L 281
A +S+ P +GASGA++ ++ L+P+ L+ F +P PAF+ L
Sbjct: 130 APASE-----------GPLIGASGAISGVVAAYFILHPRVRLWVLVLFRIPLPFPAFIPL 178
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
++L+ + + ++ + +S AH+GG A+ +RR+G
Sbjct: 179 TLWLLQQFAMLALDLDGMVSWGAHVGGILAGAILILFMRRKG 220
>gi|421589417|ref|ZP_16034562.1| rhomboid family protein [Rhizobium sp. Pop5]
gi|403705653|gb|EJZ21190.1| rhomboid family protein [Rhizobium sp. Pop5]
Length = 265
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNMI L+ FG ++ +G L Y A A G+ + H L
Sbjct: 74 TYLTYAFVHTGFWHLASNMIFLWVFGDNVEDAMGHLRFLLFYFACAAAGA----ICHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
+S+ P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 GTTSE-----------APLVGASGAISGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRR 321
+ IG+ L + I ++S AH+GG AL +RR
Sbjct: 179 LLWIGQQFLMLAIASAGDVSWGAHVGGILAGALLILVLRR 218
>gi|355746857|gb|EHH51471.1| hypothetical protein EGM_10844 [Macaca fascicularis]
Length = 379
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S F+H + H+ +N L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFNHFSLFHMAANTYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ LY+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 245 FMALYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290
Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+ L F+P+ F G L I D +I G +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339
>gi|389807333|ref|ZP_10204075.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
gi|388444412|gb|EIM00524.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
Length = 205
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG--RLHTLITSAFSHIDVEHIVS 183
V L+IAN AVF L +A +F+ +F +L SG + ++TSAF H + HI
Sbjct: 8 VTRNLLIANVAVFFLQYVAG-QFLLLHF--ALWPLGSGLFEVWQIVTSAFMHGSITHIAF 64
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ LY FG +I RT G Y AI S+ L F P
Sbjct: 65 NMLALYMFGGTIERTFGAREFTIYYFTCAIVASLLQLAVLWFFP-----------PPQYG 113
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
P LGASGA+ ++L L P + F IP+PA+L + ++ + G G
Sbjct: 114 PTLGASGAIFGLLLAFGMLYPHEKVMLIFLPIPMPAWLFVILYAAAELTMGVTGIE--PG 171
Query: 303 SAH 305
AH
Sbjct: 172 VAH 174
>gi|150007604|ref|YP_001302347.1| hypothetical protein BDI_0957 [Parabacteroides distasonis ATCC
8503]
gi|423331906|ref|ZP_17309690.1| hypothetical protein HMPREF1075_01703 [Parabacteroides distasonis
CL03T12C09]
gi|149936028|gb|ABR42725.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|409229747|gb|EKN22619.1| hypothetical protein HMPREF1075_01703 [Parabacteroides distasonis
CL03T12C09]
Length = 201
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L LY G I S++ L
Sbjct: 41 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGKGAYLALYFGGMIVASLYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 101 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 147 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 175
>gi|110635361|ref|YP_675569.1| rhomboid-like protein [Chelativorans sp. BNC1]
gi|110286345|gb|ABG64404.1| Rhomboid-like protein [Chelativorans sp. BNC1]
Length = 237
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T +F H D+ H+ NM+ L+ FG ++ LG L Y+A + G AFL
Sbjct: 74 TYVTYSFLHGDIFHLGGNMLFLWVFGDNVEDALGHLRYLAFYLACTVAG--------AFL 125
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IPV--PAFLLG 282
G+ V S+ P +GASGAV ++ + L+P+ L+ F IPV PA+++
Sbjct: 126 ------HGL-VAPDSQAPLIGASGAVAGVIAAYLILHPRVKLWVLAFARIPVRLPAYIVL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG L ++ + IS SAH+GG A+ +RR+G
Sbjct: 179 LLWIGSQFLMFAVDRENQISWSAHIGGILAGAVLVVIMRRQG 220
>gi|431796050|ref|YP_007222954.1| hypothetical protein Echvi_0667 [Echinicola vietnamensis DSM 17526]
gi|430786815|gb|AGA76944.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 209
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ + S F H D H++ NMI YFFG + E L G G VF L Y
Sbjct: 41 GQYDRFVLSGFIHKDGMHLLFNMITFYFFGRLV------EQYLTYRFGGMTGVVVFVLFY 94
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A + ++ + + ALGASG A + I L P A + + +P F+LG
Sbjct: 95 LAAIVIADIPTFLKHKNNPHYQALGASGGTAAAVFASIILMPMADICLFGLLCLPGFILG 154
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGA 309
+ +G ++ +GN +I+ AHL GA
Sbjct: 155 ILFLGYSAVKSKQGNDSINHDAHLYGA 181
>gi|406605375|emb|CCH43174.1| Rhomboid protein 1, mitochondrial [Wickerhamomyces ciferrii]
Length = 335
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
Q ++YGLI N VF LW+I + + + + + + + +LI SAFSH +
Sbjct: 130 QRHPQHLIYGLIGLNLLVFGLWQIPRNYRILSRYALLEKDIIYSKW-SLIGSAFSHQEGW 188
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ LY FG S+ +G + LY+ GA+ S+ ++Y +
Sbjct: 189 HLAMNMLALYSFGTSLISMIGSSNFMILYLNGALLSSMASILYPILFRI----------- 237
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLRIIE 295
P P+LGASGA+ A+ +L P A + F P+P LLG + +
Sbjct: 238 PIVAPSLGASGALFAVFGTFAYLLPNAKILL-FVFPIPGGASMALLGATIWNAAGCVMRW 296
Query: 296 GNSNISGSAHLGGAAVAAL 314
G+ + +AHLGG V +
Sbjct: 297 GSFDY--AAHLGGTIVGVI 313
>gi|392969387|ref|ZP_10334802.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
gi|387841581|emb|CCH56860.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
Length = 206
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 29/196 (14%)
Query: 130 LIIANTAVFMLWRIADP----KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+II T +W DP +++ N + IS G+ + L+TS F H D H+ NM
Sbjct: 6 IIILVTVAISVWGWNDPAVMDRWIMNPYQISR----RGQYYRLLTSGFLHADWGHLFFNM 61
Query: 186 IGLYFFG----MSIGRTL---GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
+ LYFFG M G G YL+ Y+ G + + + H +
Sbjct: 62 LSLYFFGGFVEMVFGALFPGSGAIYLIGFYLIGILVSDIPSFLKHRY------------- 108
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
DP +LGASG V+AI+ I P A + F +P F+ G+ I G
Sbjct: 109 DPGYN-SLGASGGVSAIIFAGIMFRPLADICLYFAFCIPGFIFGLLYIAYSYYESRRGRG 167
Query: 299 NISGSAHLGGAAVAAL 314
++ AHL GA L
Sbjct: 168 YVNHDAHLYGALFGIL 183
>gi|340621452|ref|YP_004739903.1| hypothetical protein Ccan_06760 [Capnocytophaga canimorsus Cc5]
gi|339901717|gb|AEK22796.1| Uncharacterized protein C13E711 [Capnocytophaga canimorsus Cc5]
Length = 214
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G + TS F H D +H++ NM+ LYFF + +G L +Y+ GS+F L +
Sbjct: 42 GEYWRMFTSGFLHADWQHLIFNMLTLYFFADVVLFAVGKVGFLLIYLVALYLGSLFSLYF 101
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
H + A+GASGAV I+ I P +Y FFIP+PA++
Sbjct: 102 HR--------------KETHYTAVGASGAVMGILYAAIMFAPSNYIYV-FFIPMPAYVFA 146
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + + NI +AH+GGA
Sbjct: 147 IGYLFYSVYGMKSRRDNIGHAAHIGGAV 174
>gi|403214049|emb|CCK68550.1| hypothetical protein KNAG_0B01030 [Kazachstania naganishii CBS
8797]
Length = 374
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 90/194 (46%), Gaps = 23/194 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
E VY L+ N A+F LW++ + + L S ++I SAFSH + H+ N
Sbjct: 172 EFVYTLLGINIAIFGLWQLPRCWNFLQRYML-LQKGHSSSSWSIIGSAFSHQEFWHLGMN 230
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGMWVVDPSR 242
M+ L+ FG S+ LG LYM AIGGS+F L Y A LAM
Sbjct: 231 MLALWSFGTSLATMLGTSNFFSLYMNSAIGGSLFSLWYPKIARLAMLG------------ 278
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISG 302
P+LGASGA+ + +L P A + F P+P FL + G++ G
Sbjct: 279 -PSLGASGALFGVFGCFAYLIPHAKILL-FVFPIPGGAWVAFL--ASVAWNAAGSALRWG 334
Query: 303 S----AHLGGAAVA 312
S AHLGG+A+
Sbjct: 335 SFDYAAHLGGSAIG 348
>gi|409124135|ref|ZP_11223530.1| rhomboid family protein [Gillisia sp. CBA3202]
Length = 215
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G + + TS F H+D H+ NM+ LYFF + LG + +Y+A I G++
Sbjct: 41 AGAKYQIFTSGFLHVDTSHLFVNMLTLYFFANVVIYDLGSLGFILVYLASLILGNLLSYF 100
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+H + A+GASGAV I+ I L P L F IP+PA++
Sbjct: 101 FHK--------------NDLNYSAVGASGAVMGILYSAILLRPDMMLGLFFIIPIPAYVF 146
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
G+ + + + + NI AH GGA
Sbjct: 147 GIGYLLYTIYGMKKRLGNIGHDAHFGGAV 175
>gi|301310430|ref|ZP_07216369.1| putative Rhomboid family membrane protein [Bacteroides sp. 20_3]
gi|423336678|ref|ZP_17314425.1| hypothetical protein HMPREF1059_00377 [Parabacteroides distasonis
CL09T03C24]
gi|300832004|gb|EFK62635.1| putative Rhomboid family membrane protein [Bacteroides sp. 20_3]
gi|409240558|gb|EKN33336.1| hypothetical protein HMPREF1059_00377 [Parabacteroides distasonis
CL09T03C24]
Length = 201
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L LY G I S++ L
Sbjct: 41 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLALYFGGMIVASLYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 101 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 147 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 175
>gi|256839790|ref|ZP_05545299.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738720|gb|EEU52045.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 201
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L LY G I S++ L
Sbjct: 41 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLALYFGGMIVASLYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 101 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 147 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 175
>gi|307943483|ref|ZP_07658827.1| rhomboid family protein [Roseibium sp. TrichSKD4]
gi|307773113|gb|EFO32330.1| rhomboid family protein [Roseibium sp. TrichSKD4]
Length = 226
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++ T AF H DV H+ NM+ L+ FG +I LG Y+ A G +FY
Sbjct: 75 SIFTYAFLHGDVWHLGGNMLFLWVFGDNIEDALGHVRYFFFYLLCAAAGGLFY------- 127
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF----DFFIPVPAFLLG 282
+ G S P +GASGAV ++ + L+PK ++ F +P+PA L+
Sbjct: 128 --TLANFG------SDVPLVGASGAVAGVVGAYLVLHPKVMIWVLALGRFPVPIPAGLVL 179
Query: 283 VFLIGKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRG 323
F +G + + G S+I+ SAH+GG L +RRRG
Sbjct: 180 GFWVGYQVFNAVFGPESHIAWSAHIGGILAGCLLVVFMRRRG 221
>gi|325954946|ref|YP_004238606.1| peptidase S54, rhomboid domain-containing protein [Weeksella virosa
DSM 16922]
gi|323437564|gb|ADX68028.1| Peptidase S54, rhomboid domain protein [Weeksella virosa DSM 16922]
Length = 235
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSI-----------------GRTLGPEYLLKLY 208
+ LITS F H+D H++ NM+ LYFF + + LG L LY
Sbjct: 46 YRLITSGFLHVDYTHLIFNMLTLYFFSNIVVAFFGNPFVVFGDTSFMNQNLGSILFLALY 105
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
+ I G+V L+ H + Q P+ + A+GASG V+ I+ I + P L
Sbjct: 106 LLSIIAGNVLALIEH-------RNQ------PNYS-AVGASGGVSGILFSAIAVYPTLML 151
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
F IP+PA++ + +G + + N+ +AHLGG+ LA
Sbjct: 152 GIFFVIPMPAWIFAIIYLGFSVYGMRRNLGNLGHAAHLGGSVFGLLA 198
>gi|190344799|gb|EDK36554.2| hypothetical protein PGUG_00652 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
++Y +I N AVF++W+ + + + + +S ++ SAFSH HI+ NM
Sbjct: 131 LIYTIIALNGAVFLMWKSPQMVRYLTRYGLLVKDNVSN--WAMVGSAFSHQSFSHILINM 188
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L FG ++ +G E LY+ A+ S F+ + LA SS T +
Sbjct: 189 FVLQSFGSTLVSMIGVENFTSLYLNSAVISS-FFSILIPVLARSSL----------STAS 237
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNSNISGS 303
LGASGA+ +++ +L PKA L F FFIPVP A+ L + I + I+ +
Sbjct: 238 LGASGAIFSVVGAFSYLLPKAPLAF-FFIPVPGGAWFLFLGTIAYNAAGIVFRWGVHDYA 296
Query: 304 AHLGGAAVA-ALAW 316
AHLGG+A A W
Sbjct: 297 AHLGGSAAGIAYGW 310
>gi|424872559|ref|ZP_18296221.1| putative membrane protein [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393168260|gb|EJC68307.1| putative membrane protein [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 264
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHTGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYLVCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGAV+ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TMTSE-----------APLVGASGAVSGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A +RR G
Sbjct: 179 LLFIGQQFFMLAIAPDGDVSWGAHVGGILAGAFLILVLRRPG 220
>gi|366993543|ref|XP_003676536.1| hypothetical protein NCAS_0E01050 [Naumovozyma castellii CBS 4309]
gi|342302403|emb|CCC70175.1| hypothetical protein NCAS_0E01050 [Naumovozyma castellii CBS 4309]
Length = 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VYG++ N VF LW++ + + + ++ + +LI SAFSH + H+ N
Sbjct: 137 SLVYGILGVNFLVFGLWQLPRCWPLLQKYMLLSKTHVTSKW-SLIGSAFSHQEFWHLGMN 195
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGMWVVDPSR 242
M+ L+ FG S+ + LG LYM AI GS+F L Y A LA+
Sbjct: 196 MLALWSFGTSLVQVLGVSDFFSLYMGSAITGSLFSLWYPRIARLALMG------------ 243
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNI 300
P+LGASGA+ ++ +L P + + F PVP FL + + + +
Sbjct: 244 -PSLGASGALFGVLGCFSYLFPASKILL-FVFPVPGGAWVAFLASLAWNGAGCVLRWGSF 301
Query: 301 SGSAHLGGAAVAA 313
+AHLGG+ +
Sbjct: 302 DYAAHLGGSLLGV 314
>gi|86143019|ref|ZP_01061441.1| hypothetical protein MED217_10252 [Leeuwenhoekiella blandensis
MED217]
gi|85830464|gb|EAQ48923.1| hypothetical protein MED217_10252 [Leeuwenhoekiella blandensis
MED217]
Length = 216
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+++S F H+ H+ NM+ LYFF + LG + +Y+ + G++ +H
Sbjct: 47 ILSSGFLHVSTSHLFFNMLTLYFFAPIVIGLLGNWEFIVVYLGSLVLGNLLSYYFHK--- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
D A+GASGAV+ I+ I LNP +LY F +P+PA++ G+ +
Sbjct: 104 -----------DEYHFSAVGASGAVSGILYSAILLNPDMSLYMFFIPVPIPAYIFGIGYL 152
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
+ + N NI AH GGA
Sbjct: 153 LYSIYGMRANNDNIGHDAHFGGAV 176
>gi|307719843|ref|YP_003875375.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533568|gb|ADN03102.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 213
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYL 220
G + L++ F+H HI+ NM+GL+FFG+ + R +G E+LL + G G V L
Sbjct: 53 GGMVWQLVSYMFAHASFNHILFNMLGLFFFGLQVEREMGSREFLLFYFFTGIFAGLVSLL 112
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
VY W+ LGASG V ++L P+A ++ PVPA
Sbjct: 113 VY-------------WLSGAYGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVPAPY 159
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
L + ++L N++ HL G A A L
Sbjct: 160 LVIGYTAIELLAQFGAQDNVAHLTHLAGFAGAYL 193
>gi|190893627|ref|YP_001980169.1| peptidase [Rhizobium etli CIAT 652]
gi|190698906|gb|ACE92991.1| putative peptidase protein [Rhizobium etli CIAT 652]
Length = 262
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNM+ L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
S + P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TTSPE-----------APLVGASGAISGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A+ +RRRG
Sbjct: 179 LLWIGQQFFMLAIARDGDVSWGAHVGGILAGAVLILVLRRRG 220
>gi|332291110|ref|YP_004429719.1| rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
gi|332169196|gb|AEE18451.1| Rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
Length = 294
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA------DPKFMANNFTISLD--NFLSGRLHTLITS 171
+Y ++ + LI+ N AV++L+ I F + F + D FL + +++T
Sbjct: 9 KYSTANIAIKLIVINVAVYLLFNIIPWISGLGSDFFSRYFVLPSDFVRFLQ-QPWSILTY 67
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAFLAMSS 230
AF H H+ NM+ LY F + + + +Y+ GAI GG++F L+Y+ A
Sbjct: 68 AFLHAGFGHLFWNMVWLYVFSRFVLNIFSEKKFIAIYLLGAIAGGTLFALLYNVLPAF-- 125
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
+G V+ LGAS AVNAI++ P A + F + + + VF++ +D+
Sbjct: 126 --RGTGVL-------LGASAAVNAIVVFIGTYTPNAEIRI-FTFNIKLWWIAVFVVLRDL 175
Query: 291 LRIIEGNSNISGSAHLGGAA 310
L + GN+ +HLGGAA
Sbjct: 176 LMLDSGNAG-GLISHLGGAA 194
>gi|386347942|ref|YP_006046191.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412909|gb|AEJ62474.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 213
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYL 220
G + L++ F+H HI+ NM+GL+FFG+ + R +G E+LL + G G V L
Sbjct: 53 GGMVWQLVSYMFAHASFNHILFNMLGLFFFGLQVEREMGSREFLLFYFFTGIFAGLVSLL 112
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
VY W+ LGASG V ++L P+A ++ PVPA
Sbjct: 113 VY-------------WLSGAYGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVPAPY 159
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
L + ++L N++ HL G A A L
Sbjct: 160 LVIGYTAIELLAQFGAQDNVAHLTHLAGFAGAYL 193
>gi|436837540|ref|YP_007322756.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384068953|emb|CCH02163.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 275
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 151 NNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM 209
+ ++D L+ R ++ LI++ F H+D H+ NM L F ++ +GP +L LY+
Sbjct: 30 ERYAFTVDGILTHREYSRLISAGFVHVDWWHLFFNMYALLSFAGTVEWVVGPWKVLILYL 89
Query: 210 AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY 269
A +GG++ L H + S A+GASGAV ++ I L P ++
Sbjct: 90 ASLVGGNLLALYIHR--------------NDSSYRAVGASGAVAGLIFATIVLYPGLSIS 135
Query: 270 FDFFIP--VPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
F+P +PA++ G+ + + N NI AHLGGA
Sbjct: 136 -PLFLPFRMPAWVFGLVYTLFSIYGLKSLNDNIGHDAHLGGA 176
>gi|417097158|ref|ZP_11959070.1| putative peptidase protein [Rhizobium etli CNPAF512]
gi|327193375|gb|EGE60275.1| putative peptidase protein [Rhizobium etli CNPAF512]
Length = 262
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNM+ L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
S + P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TTSPE-----------APLVGASGAISGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A+ +RRRG
Sbjct: 179 LLWIGQQFFMLAIARDGDVSWGAHVGGILAGAVLILVLRRRG 220
>gi|262381898|ref|ZP_06075036.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297075|gb|EEY85005.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 201
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L LY G I S + L
Sbjct: 41 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLALYFGGMIVASFYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 101 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 147 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 175
>gi|424897232|ref|ZP_18320806.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393181459|gb|EJC81498.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 265
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHSGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TMTSQ-----------APLVGASGAISGVVAAYVLLHPRVRVWVLVFFRLPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG AL +RR G
Sbjct: 179 LLWIGQQFFMLAIAPDGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|332663565|ref|YP_004446353.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332379|gb|AEE49480.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 281
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L++SAF H++ H++ NM+ LY F + LG + LY+ +GG++ L H
Sbjct: 48 LVSSAFLHVNWMHLIFNMLSLYAFSNLLENQLGGLNFVLLYLTSLVGGNLLALFVH---- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--VPAFLLGVFL 285
++ G + A+GASGAV ++ I L P + FF+P P +L G+
Sbjct: 104 ---RQHGSY-------SAVGASGAVCGVIFASIALFPGIEVG-TFFLPFQFPGWLFGLLY 152
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ + I NI AHLGGA + L
Sbjct: 153 VAISIYGIKSKRGNIGHEAHLGGALIGVL 181
>gi|207345124|gb|EDZ72047.1| YGR101Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 257
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L+ FG S+ LG LYM AI GS+F L Y ++ +V PS
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252
Query: 245 ALGASG 250
LGASG
Sbjct: 253 -LGASG 257
>gi|448348387|ref|ZP_21537236.1| rhomboid family protein [Natrialba taiwanensis DSM 12281]
gi|445642754|gb|ELY95816.1| rhomboid family protein [Natrialba taiwanensis DSM 12281]
Length = 305
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYH 223
T +TS FSH D+ HIV N I ++FFG + R +G L++ +GA+ G
Sbjct: 123 TWVTSVFSHSPGDILHIVFNSIVIFFFGPLVERYVGSRKFAALFIVSGALAG-------- 174
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL-- 281
L+ + + V P LGASGA AIM + LNPK T+Y +PVP +LL
Sbjct: 175 --LSQVAIQIYQGPVIPGVGGVLGASGAALAIMGVLTVLNPKLTVYLYMIVPVPIWLLTA 232
Query: 282 -----GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
VF IG G N++ +AHL G V LA+ +R
Sbjct: 233 GTAIISVFFIGLGT----SGAGNVAHAAHLVGLLV-GLAYGEYVKR 273
>gi|218517088|ref|ZP_03513928.1| putative peptidase protein [Rhizobium etli 8C-3]
Length = 262
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNM+ L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
S + P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TTSPE-----------APLVGASGAISGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A+ +RRRG
Sbjct: 179 LLWIGQQFFMLAIARDGDVSWGAHVGGILAGAVLILVLRRRG 220
>gi|116254053|ref|YP_769891.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115258701|emb|CAK09806.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 261
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFVHTGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYLVCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGAV+ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TMTSE-----------APLVGASGAVSGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A +RR G
Sbjct: 179 LLWIGQQFFMLAIAPDGDVSWGAHVGGILAGAFLILLLRRPG 220
>gi|348668511|gb|EGZ08335.1| hypothetical protein PHYSODRAFT_434799 [Phytophthora sojae]
Length = 87
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+T+ FS + + H+ +NM+GLYFFG I LGP L LY+ G + + A
Sbjct: 2 YTLLTAMFSQMSLGHLGANMLGLYFFGRQIAEVLGPRRFLYLYLVGGV-------LSSAA 54
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
+ ++ G + LGASGAVNAI + + L P
Sbjct: 55 AVLEQQKSGRLTFN------LGASGAVNAITAMSVLLFP 87
>gi|255013867|ref|ZP_05285993.1| hypothetical protein B2_08162 [Bacteroides sp. 2_1_7]
gi|298375549|ref|ZP_06985506.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
gi|298268049|gb|EFI09705.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
Length = 177
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L Y G I S++ L
Sbjct: 17 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLAFYFGGMIVASLYDL 76
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 77 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 122
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 123 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 151
>gi|124506221|ref|XP_001351708.1| rhomboid protease ROM9 [Plasmodium falciparum 3D7]
gi|23504636|emb|CAD51515.1| rhomboid protease ROM9 [Plasmodium falciparum 3D7]
Length = 488
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 45/239 (18%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADP------------------------------ 146
+L Y S V Y LI+ + V+ LW IA+P
Sbjct: 259 FLYHYKLSPVTYTLILLHIFVYFLWNIAEPSRNSYNYYYINNFKHNNYNNKNKYTSPLLS 318
Query: 147 -KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
M F+ SL N +L+TL+T+ SH ++ + N I LY+ G ++ + +
Sbjct: 319 TDTMYKYFSCSLQNLKEKKLYTLVTNLISHNTIQSFLLNTISLYYIGTALEKIIQSRNFF 378
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
Y+ + S ++YH + ++V GASG++++I+ F+ P
Sbjct: 379 ITYLISGVLSSYIQILYHK-----NNYNNIYV--------FGASGSISSILSTYTFMYPS 425
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRRRG 323
+Y + +P L ++ ++ + +G AHL G + + + +RG
Sbjct: 426 QNIYLYGVLALPLALFSSLYFLNEIYCVLSNRQDNTGHIAHLTGMGLGLIYYYFFIKRG 484
>gi|443244932|ref|YP_007378157.1| putative transmembrane rhomboid family protein [Nonlabens
dokdonensis DSW-6]
gi|442802331|gb|AGC78136.1| putative transmembrane rhomboid family protein [Nonlabens
dokdonensis DSW-6]
Length = 211
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+N+ ++ G + TS F H + H+ NM+ L+FF ++ LG L +Y A
Sbjct: 30 SNYLFNIAGIQRGEQYRFFTSGFLHSNQNHLFFNMLTLFFFAGTVVYKLGDVKFLIIYFA 89
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+GG+ FL+ R+ ALGASGAV+ I+ I L+P +YF
Sbjct: 90 SLLGGN--------FLSYLIHRE------EYHYSALGASGAVSGIIYSAILLDPTMRIYF 135
Query: 271 DFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+P +L G+ + + + N NI AH GGA L
Sbjct: 136 ----GIPGWLFGIGYLIYSFYGMKKLNDNIGHDAHFGGAVAGVL 175
>gi|47228277|emb|CAG07672.1| unnamed protein product [Tetraodon nigroviridis]
Length = 376
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G++ N V WRI + M FT + + + ++ S+FSH + H+++
Sbjct: 164 KTVTGIVAVNAVVLCCWRIPIMQRSMIKYFTSNPAS--KTKCLPMVLSSFSHYSLIHMMA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM L+ F I LG E L +Y+ AG I V Y+ A +
Sbjct: 222 NMYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYMCKTATGRL-------------- 267
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSN 299
P+LGASGAV A++ P+A L F+P F G LI D + +I G
Sbjct: 268 YPSLGASGAVMAVLAAVCAKVPEAKLGI-IFLPTVTFSAGSALKALIAIDTMGLILGWRL 326
Query: 300 ISGSAHLGGA 309
+ +AHLGGA
Sbjct: 327 LDHAAHLGGA 336
>gi|410101899|ref|ZP_11296827.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
gi|409239697|gb|EKN32481.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
Length = 201
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGSVFYL 220
+ ++T F H D+ H++ NM + FG+ I RT G L Y G I S++ L
Sbjct: 41 YRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLAFYFGGMIVASLYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ KR+ DP ++GASGAV+A++ IFL+P + F +PVP +
Sbjct: 101 I---------KRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPVPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + NI+ +AH GA
Sbjct: 147 FGLLYLAYCQYMAKQTGDNINHNAHFYGA 175
>gi|256422779|ref|YP_003123432.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256037687|gb|ACU61231.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 203
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ + ITS H + H+ NM L+FFG I R + KLY YL+++
Sbjct: 42 QYYRFITSGLVHANFMHLAFNMFTLFFFGGFIERQFEVIFQSKLY----------YLLFY 91
Query: 224 AF-LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
L +S + + +GASGAV+A++ I NP AT+Y F IP+PA L G
Sbjct: 92 ILGLILSDIPTFLKHRNNPDYQTIGASGAVSAVVFAAILFNPWATIYV-FVIPMPAILYG 150
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
V +G + + ++ I+ AHL GA L
Sbjct: 151 VVYLGYTIYMSRQESNGINHDAHLWGAVFGIL 182
>gi|407779515|ref|ZP_11126770.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
gi|407298646|gb|EKF17783.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
Length = 255
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 20/161 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ YL H F+
Sbjct: 74 TYITYSFLHGDLLHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGA--YL--HGFI 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VPAFLLG 282
+S +P +GASGA+ I+ + L+P+ ++ F IP +PAF+
Sbjct: 130 EPASS-----------SPLIGASGAIAGIVAAYLILHPRVKVWVLAFARIPLRIPAFVAL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRR 322
F IG L + ++ + +S +AH GG A+ +RRR
Sbjct: 179 AFWIGFQFLMLFVDTENQVSWAAHAGGILAGAVLVLILRRR 219
>gi|86359374|ref|YP_471266.1| hypothetical protein RHE_CH03791 [Rhizobium etli CFN 42]
gi|86283476|gb|ABC92539.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 260
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ SNM+ L+ FG ++ +G L Y+ A G+ + H L
Sbjct: 74 TYLTYAFIHAGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
+S+ P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TTTSE-----------APLVGASGAISGVVAAYVMLHPRVRVWVLVFLRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG AL +RR G
Sbjct: 179 LLWIGQQFFMLAIAPDGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|440716760|ref|ZP_20897264.1| Rhomboid family protein [Rhodopirellula baltica SWK14]
gi|436438257|gb|ELP31817.1| Rhomboid family protein [Rhodopirellula baltica SWK14]
Length = 301
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 104 ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
ER ++ R W R ++ LI N AVF++ + + + F +S + L
Sbjct: 5 ERDYS--RSERTPWDRIENPLSMIKVLIGINVAVFLVDIVLGDRLI-QWFGVSGQSLLRP 61
Query: 164 RL-HTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L +T F H D+ HI+ NM L+ FG + + LG + L+ Y+ I G + +
Sbjct: 62 WLWFQTLTYGFLHNTEDILHILFNMFLLFVFGRPVEQRLGGQEFLRFYLIAVIAGGIVGM 121
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+Y A+S G + P +GASGAV A+M+L P + F F PV A++
Sbjct: 122 LYPC--AISLFHTGQLSPEIIGVPTIGASGAVIAVMVLFACYFPHQEVLFMFVFPVKAWV 179
Query: 281 LGVFLIGKDMLR---IIEGNSNISGSAHLGGA 309
L L+ D++ + S+ + HL GA
Sbjct: 180 LATVLVLFDLISAFGLFGSASSTAFEVHLAGA 211
>gi|421612731|ref|ZP_16053830.1| Rhomboid family protein [Rhodopirellula baltica SH28]
gi|408496404|gb|EKK00964.1| Rhomboid family protein [Rhodopirellula baltica SH28]
Length = 301
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 11/212 (5%)
Query: 104 ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
ER ++ R W R ++ LI N AVF++ I + F +S + L
Sbjct: 5 ERDYS--RSERTPWDRIENPLSMIKVLIGINVAVFLV-DIVLGDQLIQWFGVSGQSLLRP 61
Query: 164 RL-HTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L +T F H D+ HI+ NM L+ FG + + LG + L+ Y+ I G + +
Sbjct: 62 WLWFQTLTYGFLHNTEDILHILFNMFLLFVFGRPVEQRLGGQEFLRFYLIAVIAGGIVGM 121
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+Y A+S G + P +GASGAV A+M+L P + F F PV A++
Sbjct: 122 LYPC--AISLFHTGQLSPEIIGVPTIGASGAVIAVMVLFACYFPHQEVLFMFVFPVKAWV 179
Query: 281 LGVFLIGKDM---LRIIEGNSNISGSAHLGGA 309
L L+ D+ L + S+ + HL GA
Sbjct: 180 LASVLVLIDLVSALGLFGSASSTAFEVHLAGA 211
>gi|332298948|ref|YP_004440870.1| rhomboid family protein [Treponema brennaborense DSM 12168]
gi|332182051|gb|AEE17739.1| Rhomboid family protein [Treponema brennaborense DSM 12168]
Length = 213
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 26/199 (13%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL---ITSAFSHID 177
Y +S ++ G+ N VF+L + PK ++ +SL+ R H +T F H
Sbjct: 16 YNASFIIIGV---NVLVFVLTYL-YPKLLSY---LSLNVVYVVRYHMYWQPLTYMFVHGS 68
Query: 178 VEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
HI+ NM+G++FFG+++ R +G E+LL + +G + G + + +Y+A G +
Sbjct: 69 FSHILFNMLGIFFFGVAVERAIGSKEFLLLYFCSGILCGVISFAIYYA--------TGTF 120
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDML-RIIE 295
V +GASGA+ A++L + P++ ++ +P+PA LL G ++ ++
Sbjct: 121 VF------LMGASGAIYALLLTYAVIFPRSRIFIWGILPIPAPLLIAIYAGIEIASQLFS 174
Query: 296 GNSNISGSAHLGGAAVAAL 314
++ AHL G AVA L
Sbjct: 175 LRDGVAHMAHLTGFAVAWL 193
>gi|319955282|ref|YP_004166549.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319423942|gb|ADV51051.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 216
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG+ + TS F H+D H+ NM LYFF + LG + +Y + GS+ +V
Sbjct: 41 SGQKDRMFTSGFLHVDFSHLFFNMFTLYFFAPVVIEWLGTVKFVIIYSISLLAGSLLSMV 100
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFL 280
+H + A+GASGAV I+ I L P L F IPVPA++
Sbjct: 101 FHK--------------NEDYYTAVGASGAVTGILYAAILLQPTMQLGIMFIPIPVPAYV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + + NI +AH GGA
Sbjct: 147 FGIGYLLYSIYGMKSRLGNIGHTAHFGGA 175
>gi|327267316|ref|XP_003218448.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Anolis carolinensis]
Length = 355
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 24/234 (10%)
Query: 82 LSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFML 140
L ++++ F D + + P++ FR + + W + V G+I AN VF L
Sbjct: 105 LKARVQNYFEDARADWMDRIRPQKRL-KFRKQVKLWWDSLSRGQRAVSGIIAANVLVFCL 163
Query: 141 WRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
WRI + M FT N S L + ++ S FSH H+ +NM L+ F SI
Sbjct: 164 WRIPSLHRIMITYFT---SNPASHALCSPMLLSTFSHFSFLHMAANMYVLWSFSTSIVSL 220
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
LG E + LY + G V +A +++ R G P+LGASGA+ ++
Sbjct: 221 LGREQFMALYFS---AGVVSTFASYA-CKIATGRFG---------PSLGASGAIMTVLAA 267
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L I D ++ G +AHLGGA
Sbjct: 268 VCTKIPEAKLAI-IFLPMFTFTAGNALKAIIALDSAGLLLGWKFFDHAAHLGGA 320
>gi|288682824|ref|NP_001165755.1| presenilin associated, rhomboid-like [Xenopus (Silurana)
tropicalis]
gi|157422963|gb|AAI53676.1| Unknown (protein for MGC:180490) [Xenopus (Silurana) tropicalis]
Length = 353
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 100/229 (43%), Gaps = 25/229 (10%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD- 145
KS+ D + + +FR + W + V G+I+ N VF LWR+
Sbjct: 105 KSYLDDIQADWLEKLRPPKHGAFRKQVNEWWNSLSEGQKTVSGIIVLNGLVFCLWRVPSL 164
Query: 146 PKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L +I S FSH + H+ +NM L+ F SI LG E
Sbjct: 165 QRTMIRYFT---SNPASRSLCLPMIFSTFSHFSLFHMAANMYVLWSFSTSIVSILGKEQF 221
Query: 205 LKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
L +Y+ AG + + Y+ +++ R G P+LGASGA+ I+
Sbjct: 222 LAVYLSAGTVSTFISYVS-----KIATGRFG---------PSLGASGAIMTILAAVCTKM 267
Query: 264 PKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L + D +I G +AHLGGA
Sbjct: 268 PEAKLAI-IFLPMFTFTAGNALKAIMAIDAAGLIMGWRFFDHAAHLGGA 315
>gi|417304034|ref|ZP_12091070.1| Rhomboid family protein [Rhodopirellula baltica WH47]
gi|327539627|gb|EGF26235.1| Rhomboid family protein [Rhodopirellula baltica WH47]
Length = 301
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 11/212 (5%)
Query: 104 ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
ER ++ R W R ++ LI N AVF++ I + F +S + L
Sbjct: 5 ERDYS--RSERTPWDRIENPLSMIKVLIGINVAVFLV-DIVLGDQLIQWFGVSGQSLLRP 61
Query: 164 RL-HTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L +T F H D+ HI+ NM L+ FG + + LG + L+ Y+ I G + +
Sbjct: 62 WLWFQTLTYGFLHNTEDILHILFNMFLLFVFGRPVEQRLGGQEFLRFYLIAVIAGGIVGM 121
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+Y A+S G + P +GASGAV A+M+L P + F F PV A++
Sbjct: 122 LYPC--AISLFHTGQLSPEIIGVPTIGASGAVIAVMVLFACYFPHQEVLFMFVFPVKAWV 179
Query: 281 LGVFLIGKDMLR---IIEGNSNISGSAHLGGA 309
L L+ D++ + S+ + HL GA
Sbjct: 180 LATVLVLFDLISAFGLFGSASSTAFEVHLAGA 211
>gi|116621336|ref|YP_823492.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116224498|gb|ABJ83207.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 246
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR---LHTLITSAFSHIDVEHIVSNMI 186
L+I NT VF++ + +F + ++L + + L+T F H + H++ NM+
Sbjct: 24 LLIVNTVVFLITSLFARQFGDDFRLLALAPVAVVQHFAIWQLVTYLFLHGGITHLLFNML 83
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
L+ FG + G LK Y IG V + +A + G WV T +
Sbjct: 84 ALWMFGTPLESDWGTRQFLKYYFICGIGAGVCDVAMNAMM-------GNWV-----TSTI 131
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHL 306
GASGA+ ++L P T+ F P+ A + + ++ I N+ IS AHL
Sbjct: 132 GASGAIYGLLLAYGVCYPDQTVLMGFLFPIKAKYMVMIYAAIELYLSIGVNNGISNIAHL 191
Query: 307 GGAAVA 312
GG V
Sbjct: 192 GGMVVG 197
>gi|410031402|ref|ZP_11281232.1| hypothetical protein MaAK2_19469 [Marinilabilia sp. AK2]
Length = 312
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++T F H + HI+ NM+ LY+FG+ + + LG L LY+ G I G+VFY+V
Sbjct: 72 SILTYMFFHEGLFHILFNMLFLYWFGLLVDQYLGSRKLTNLYVLGGIAGAVFYVV----- 126
Query: 227 AMSSKRQGMWVVDPSRTPA------LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
M+ + P + LGAS V A+++ L+P T + PV
Sbjct: 127 --------MYNISPHFSEVLPFAKMLGASAGVYAVVVGAATLSPNTTFHLLLLGPVKIKY 178
Query: 281 LGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRR 321
+ +F + + + SN G AHLGGAA+ ++R+
Sbjct: 179 IAIFYV--VIAFVNSAGSNAGGELAHLGGAAMGYFYITQLRK 218
>gi|326334502|ref|ZP_08200713.1| rhomboid family protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325693271|gb|EGD35199.1| rhomboid family protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 277
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 126 VVYGLIIANTAVFM-------LWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHID 177
VVY L++ ++ LW+ P F+ + F +S + L G+ TL+T +F H
Sbjct: 24 VVYILLVGYLCGYLFPSIIAFLWQTTVP-FIRDMFALSQSFSALMGKPWTLLTYSFFHTS 82
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H NM+ LYF G+ P+ L +Y G I G +F+++ + + S+R+
Sbjct: 83 FGHWFFNMVMLYFVGILFMNLFPPKRFLGIYAMGIIMGGLFFILTYQLFPVFSQREDF-- 140
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
LGAS + A+++ P +Y +P ++LG LI D+ I N
Sbjct: 141 -------LLGASAGIMAVLIFLSTYTPFYRIYLFRIFSLPLWILGALLIIIDLASIPISN 193
Query: 298 SNISGSAHLGGAAVAALAWARIRR 321
+ AHLGGA L ++R
Sbjct: 194 AG-GHIAHLGGALAGCLYALYLKR 216
>gi|302336842|ref|YP_003802048.1| rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
gi|301634027|gb|ADK79454.1| Rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
Length = 214
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--LHT 167
FRYR+ + +G+II N VF ++ P+ + +T + + G+
Sbjct: 11 FRYRYYN---------AAFGIIIVNI-VFFVFNTISPQ--SRYYTALIPGLIIGKGFYWQ 58
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFL 226
T F+H ++ HI NM+GL+FFG + R +G E+LL + G + G ++VY
Sbjct: 59 FFTYMFTHANISHIFFNMLGLFFFGTQVERRIGSSEFLLFYLLTGFLAGLFSFIVY---- 114
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
GM+ LGASGA+ A++L P A +Y IPV A LL +
Sbjct: 115 ----TLTGMY-----GAVLLGASGAIFAVLLAFAVYFPYANIYIMGIIPVKAPLLVIGYT 165
Query: 287 GKDML-RIIEGNSNISGSAHLGGAAVA 312
++ +++ NS ++ HL G A
Sbjct: 166 AIELFSQLLSINSGVAHLTHLAGFVFA 192
>gi|15639966|ref|NP_219419.1| glpG protein, [Treponema pallidum subsp. pallidum str. Nichols]
gi|189026205|ref|YP_001933977.1| protein GlpG [Treponema pallidum subsp. pallidum SS14]
gi|338706929|ref|YP_004673697.1| rhomboid family protein [Treponema paraluiscuniculi Cuniculi A]
gi|378974570|ref|YP_005223178.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975627|ref|YP_005224237.1| rhomboid family protein [Treponema pallidum subsp. pallidum DAL-1]
gi|378982479|ref|YP_005230786.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
CDC2]
gi|408502828|ref|YP_006870272.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Mexico A]
gi|3323304|gb|AAC65937.1| glpG protein, putative [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018780|gb|ACD71398.1| possible protein GlpG [Treponema pallidum subsp. pallidum SS14]
gi|335344990|gb|AEH40906.1| rhomboid family protein [Treponema paraluiscuniculi Cuniculi A]
gi|374678898|gb|AEZ59190.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
CDC2]
gi|374679967|gb|AEZ60258.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374681027|gb|AEZ61317.1| rhomboid family protein [Treponema pallidum subsp. pallidum DAL-1]
gi|408476191|gb|AFU66956.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Mexico A]
Length = 208
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDV 178
+Y + V L++AN AVF++ + + + L + R++ + T F H V
Sbjct: 9 RYSYTNVTLSLVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGV 66
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H++ NM+GL FFG +I + +G +L Y+ G + G+
Sbjct: 67 WHLLFNMLGLVFFGQTIEKKMGSSEMLLFYLLVGTLCGA-------------GACAAYLC 113
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
V LGASG++ AI+ L + P A +Y IP+PA LL V I ++ +
Sbjct: 114 VGRLNVLLLGASGSIFAILFLFSVMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSR 173
Query: 298 SNISGSAHLGGAAVAALAWARIRRR 322
N+S HL G AW IR R
Sbjct: 174 DNVSHLTHLLG---VLFAWGYIRIR 195
>gi|187920241|ref|YP_001889272.1| rhomboid family protein [Burkholderia phytofirmans PsJN]
gi|187718679|gb|ACD19902.1| Rhomboid family protein [Burkholderia phytofirmans PsJN]
Length = 198
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 22/202 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDVEHIVSNM 185
L++ NTA F++ ++ DP + F + SG + L+T +F H + H+ NM
Sbjct: 5 LVVLNTAAFLIEQL-DPDRLIGLFALWPATSSSGVPAFHIWQLLTYSFLHANFMHLAVNM 63
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
GLY FG + T+G +L+ LY + G++ L G+ V R PA
Sbjct: 64 FGLYMFGRDVESTIGRAHLVLLYFTSVLSGALLQLAV-----------GLADVT-VRAPA 111
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLG-VFLIGKDMLRIIEGNSNISGS 303
+GAS V +++ L P+ + F +P+PA+L + + + +L + S I+
Sbjct: 112 IGASAGVFGLLVGYALLFPRRRVILLFPPVPMPAWLFATCYGVLELVLGVAGAQSGIAHF 171
Query: 304 AHLG---GAAVAALAWARIRRR 322
AH+G GAAV L W R R
Sbjct: 172 AHVGGMLGAAVLLLHWMRAPSR 193
>gi|161522943|ref|YP_001585872.1| rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189348227|ref|YP_001941423.1| membrane protein [Burkholderia multivorans ATCC 17616]
gi|160346496|gb|ABX19580.1| Rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189338365|dbj|BAG47433.1| uncharacterized membrane protein [Burkholderia multivorans ATCC
17616]
Length = 197
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL-----------SGRLHT--LITSA 172
+ Y LI+ N AVF IA+ A+ + + +D F + H L+T +
Sbjct: 1 MTYALILVNVAVF----IAE----ASGWPMLIDQFALWPPARPGAPATPGFHVWQLLTYS 52
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
H + HI NM GLY FG + R LG L LY+A + G++ L
Sbjct: 53 VLHASLAHIAFNMFGLYMFGRDVERVLGRARFLALYLASVLAGAITQLAV---------- 102
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDML 291
+ + PS P +GAS V ++ L PK + F +P+PA+L ++L
Sbjct: 103 --IRALPPSDAPTVGASAGVFGALIAYAVLFPKRRVVLLFPPVPMPAWLFATGYALTELL 160
Query: 292 RIIEGN-SNISGSAHLGGAAVAALAWARIRRR 322
+ G+ S ++ AHLGG A + A R+R
Sbjct: 161 SGLSGDTSGVAHFAHLGGMLGALVCLAFWRKR 192
>gi|110636711|ref|YP_676918.1| hypothetical protein CHU_0287 [Cytophaga hutchinsonii ATCC 33406]
gi|110279392|gb|ABG57578.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 279
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+I+S F HI H + NM LY F S+ +G L +Y A GGS+F L H
Sbjct: 48 IISSGFLHIGWTHFILNMYTLYAFSSSLELYVGLLPFLIIYFASLTGGSLFSLFVH---- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVFL 285
+ G + A+GASGAV+ ++ I L P L F FIP+ PA+L G+
Sbjct: 104 ---RNHGDYT-------AVGASGAVSGVVFAAIALFPGMQLGFP-FIPIHFPAWLFGLVY 152
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + NI AHLGGA + L
Sbjct: 153 MLYTIYGVRSSRDNIGHEAHLGGAVIGMLT 182
>gi|448362119|ref|ZP_21550731.1| rhomboid family protein [Natrialba asiatica DSM 12278]
gi|445648989|gb|ELZ01933.1| rhomboid family protein [Natrialba asiatica DSM 12278]
Length = 303
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 27/166 (16%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYH 223
T +TS FSH D+ HIV N I ++FFG + R +G L++ +GA+ G
Sbjct: 123 TWVTSVFSHNPGDILHIVFNSIVIFFFGPLVERYVGSRKFAALFIVSGALAG-------- 174
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL-- 281
L+ + + V P LGASGA AIM + LNPK T+Y +PVP +LL
Sbjct: 175 --LSQVAIQIYQGPVIPGVGGVLGASGAALAIMGVLTVLNPKLTVYLYGLVPVPIWLLTA 232
Query: 282 -----GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
V LIG G N++ +AHL G V LA+ +R
Sbjct: 233 GTAVISVVLIGTG------GGGNVAHAAHLVGLLV-GLAYGEYVKR 271
>gi|399037239|ref|ZP_10734118.1| putative membrane protein [Rhizobium sp. CF122]
gi|398065231|gb|EJL56882.1| putative membrane protein [Rhizobium sp. CF122]
Length = 262
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H H+ NM+ L+ FG ++ +G L Y+ A G++ H +
Sbjct: 75 TYITYSFVHSGFWHLAPNMLFLWVFGDNVEDAMGHLRFLVFYLLCAAAGALV----HGLV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
+S+ P +GASGA++ ++ + L+P+ ++ +P+PAF+
Sbjct: 131 GTTSE-----------APLVGASGAISGVVTAYVVLHPRVKVWVLVLMRVPLPLPAFVPL 179
Query: 283 VFLIGKD-MLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ ++ ++E + +IS AH+GG L +RRRG
Sbjct: 180 LLWIGQQFVMLVLEPDGSISWGAHVGGILAGGLLVLLMRRRG 221
>gi|241206539|ref|YP_002977635.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860429|gb|ACS58096.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 261
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y A G+ + H L
Sbjct: 74 TYLTYAFVHTGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYFVCAAAGA----LCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGAV+ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 TMTSE-----------APLVGASGAVSGVVAAYVLLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG A +RR G
Sbjct: 179 LLWIGQQFFMLAIAPDGDVSWGAHVGGILAGAFLILVLRRPG 220
>gi|256425572|ref|YP_003126225.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040480|gb|ACU64024.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 292
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 28/215 (13%)
Query: 108 ASFRYRWRSWLRQYGSSE------VVYGLIIANTAVFMLWRIADPK-----FMANNFTIS 156
SF R WLRQ + V+ L++ V+++ +IA F+A+N +I
Sbjct: 4 TSFSADIRYWLRQGNTINLLLFWNVIVFLVVG--IVYLIGKIAPSTGFISLFIADNLSIH 61
Query: 157 LDNFLSGRL-HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
+ F R L+T F+H + HI+ NM+ LY+FG LG + +L LY+ G I G
Sbjct: 62 SNVFAFLRKPWGLVTYMFTHFEFLHILFNMLNLYWFGNIFRSFLGNQRILPLYLLGGIAG 121
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
+ YL+ + V + P +GAS +V AI++ P +
Sbjct: 122 GLAYLLVYNL-----------VFGGANVPMIGASASVMAILIACATKLPNYEIGLLLIGT 170
Query: 276 VPAFLLGVFLIGKDMLRIIEGNSNISG-SAHLGGA 309
+ L + +I D++ + +G NI G +AH+GGA
Sbjct: 171 IRLKWLAIIVIVLDLVSLTQG--NIGGITAHMGGA 203
>gi|117558447|gb|AAI25773.1| LOC100036610 protein [Xenopus (Silurana) tropicalis]
Length = 324
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 100/229 (43%), Gaps = 25/229 (10%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD- 145
KS+ D + + +FR + W + V G+I+ N VF LWR+
Sbjct: 76 KSYLDDIQADWLEKLRPPKHGAFRKQVNEWWNSLSEGQKTVSGIIVLNGLVFCLWRVPSL 135
Query: 146 PKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L +I S FSH + H+ +NM L+ F SI LG E
Sbjct: 136 QRTMIRYFT---SNPASRSLCLPMIFSTFSHFSLFHMAANMYVLWSFSTSIVSILGKEQF 192
Query: 205 LKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
L +Y+ AG + + Y+ +++ R G P+LGASGA+ I+
Sbjct: 193 LAVYLSAGTVSTFISYVS-----KIATGRFG---------PSLGASGAIMTILAAVCTKM 238
Query: 264 PKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L + D +I G +AHLGGA
Sbjct: 239 PEAKLAI-IFLPMFTFTAGNALKAIMAIDAAGLIMGWRFFDHAAHLGGA 286
>gi|213407032|ref|XP_002174287.1| presenilins-associated rhomboid-like protein [Schizosaccharomyces
japonicus yFS275]
gi|212002334|gb|EEB07994.1| presenilins-associated rhomboid-like protein [Schizosaccharomyces
japonicus yFS275]
Length = 298
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIAD----PKFMANNFTISLDNFLSGRLHTLITSAF 173
+ Q S ++V ++ N AV +LW++ +F+ + +TI N + L +++ SAF
Sbjct: 76 IHQPSSKKIVLSIVGVNAAVLLLWKLRPYGKVVRFL-DRYTIM--NPVRTTLPSMLLSAF 132
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH H NMI Y F S+ +GP L + + ++ + +H S+
Sbjct: 133 SHQSNWHFAVNMIAFYSFAPSVVDVMGPNQFLAFFTTSVLASNLVSIFHHRLRFGSAMTP 192
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGVFLIGK--- 288
G +LGASGAV AI + P A++ F FIP+ +GV L+G
Sbjct: 193 G----------SLGASGAVYAIAAATSYFFPNASVSIIFLPFIPI---RIGVALLGLMAF 239
Query: 289 DMLRIIEGN--SNISGSAHLGGA 309
D +I + + I +AHLGG
Sbjct: 240 DAWGLINRSRFTFIDHAAHLGGG 262
>gi|255534977|ref|YP_003095348.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
gi|255341173|gb|ACU07286.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
Length = 218
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LI++ F H D+ H++ NM+ LYFFG + G L +Y+ + G+VF L +
Sbjct: 45 LISAGFLHGDMMHLLFNMMTLYFFGPIVLEAFGALGFLVVYLGSIVFGNVFSLYLY---- 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--VPAFLLGVFL 285
K Q S A+GASG V+ I+ I + P +YF FFIP +P ++ G
Sbjct: 101 ---KNQ-------SWYSAIGASGGVSGILFASIAMIPDLGIYF-FFIPIAIPGYIFGFLY 149
Query: 286 IGKDMLRII---EGNSNISGSAHLGGA 309
+ ++ EG+ NI +AHLGGA
Sbjct: 150 FAYSVYMMLNPREGD-NIGHAAHLGGA 175
>gi|408672893|ref|YP_006872641.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387854517|gb|AFK02614.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 234
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
H ITS F H D H+ NM LY FG + ++ + IG + L Y
Sbjct: 68 HRFITSGFVHADYMHLFFNMYTLYSFG-----EFMEQVFIQRFDDPKIGSVAYVLFYVIA 122
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ +S + S +LGASGAV+A++ I P A L FFIP+PAF+ +
Sbjct: 123 IVVSDLPTFVKHRKDSGYRSLGASGAVSAVIFGTILFIPTAQLAI-FFIPMPAFIFAILY 181
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ + GN I+ SAH GA
Sbjct: 182 LAYTYYEMRRGNGYINHSAHWWGA 205
>gi|402080617|gb|EJT75762.1| hypothetical protein GGTG_05692 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 323
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 88/215 (40%), Gaps = 41/215 (19%)
Query: 126 VVYGLIIANTAVFMLWRIADPK-------------------FMANNFTISLDNFLSGRLH 166
VV G+ AN AV+ W +A + +M NF +S +N L GR
Sbjct: 98 VVLGVAGANVAVYYWWWLARREGPHNSPWSTRWSRTTEKLDWMRENFVLSAENVLQGRWW 157
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFG-MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TL+TSAFSH D H+ NM+ +F M++ G L L + A+ S L++
Sbjct: 158 TLLTSAFSHYDTVHLAVNMMVFHFSATMALELGFGAARLAFLSLGSALTASAASLLHDQT 217
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF- 284
A G ALGASG V IM P+ +Y + F
Sbjct: 218 TAHQGPVSG----------ALGASGMVEGIMAAVACTAPRRWVYLLLPPVPVPLGVMCFG 267
Query: 285 LIGKDMLRI----IEGNSN------ISGSAHLGGA 309
+G D+ R+ EG + + +AHLGGA
Sbjct: 268 FLGWDLYRLYRARTEGPTENWMGNFVGYAAHLGGA 302
>gi|353240827|emb|CCA72677.1| hypothetical protein PIIN_06614 [Piriformospora indica DSM 11827]
Length = 421
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 35/238 (14%)
Query: 105 RSFASFRYRW--RSWLRQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFL 161
RSF ++ Y + +SW+ E+ Y L+ AV+++ I A +F F+ + L
Sbjct: 156 RSFFNYAYYYVAQSWVNLTEGKEMSYKLVGCFAAVYVMGLIPAARQFAHRAFS---HDPL 212
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGM---------------SIGRTLGPEYLLK 206
SGR+ TL TS F H + H+ N L FG + L + L
Sbjct: 213 SGRVTTLFTSQFGHAGLLHMAVNSFALLGFGEFAWSYLRHKQVSGAGKMDEALSGYHFLA 272
Query: 207 LYMAGAIGGSVFYLVYHAFLA-------MSSKRQGMWVVDPSRTPALGASGAVNAIMLLD 259
++A G+V L H F A MS+ +G V P+ GASGA+ A +++
Sbjct: 273 FHLA---AGTVAALTSHLFAARVLVPRMMSAISKGGEVTATQILPSTGASGAIWASLMVT 329
Query: 260 IFLNPKATLYFDF--FIPVPAFLLGVF-LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
P T+ F F P+ + GV+ L+ D++ +I G + HLGGAA AL
Sbjct: 330 ALGWPHTTVTLVFLPFFPI-SIGTGVYGLVALDIIGLIRGWRFFDHAGHLGGAAFGAL 386
>gi|50547587|ref|XP_501263.1| YALI0B23364p [Yarrowia lipolytica]
gi|49647129|emb|CAG83516.1| YALI0B23364p [Yarrowia lipolytica CLIB122]
Length = 356
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 126 VVYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++ +I N A F+LW+ +P +FM N + R LI SAFSH + H
Sbjct: 153 MISAIIGVNAAFFLLWKSGNPWIIRFMFENMLLKTGPGF--RPAQLIGSAFSHQEFWHFF 210
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM LY FG+ + T+G + +YM + S L+ + L +
Sbjct: 211 VNMFVLYQFGIPVAMTMGSAWFCHMYMTSVVVSSFTSLLVPSLLGRAIM----------- 259
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNI 300
+LGASGA+ +++ + + P AT+ F FF+P+P FL I ++ I+
Sbjct: 260 --SLGASGAIFSVVGVFCSVFPDATIGF-FFVPLPFGAWWFFLGSIAMNVGGIVGRWGRY 316
Query: 301 SGSAHLGGAAVAA-LAW----------ARIRRRGF 324
+ HLGG+ W R++RRG+
Sbjct: 317 DYAGHLGGSLSGLYFGWRVNQFRSEMRERMKRRGY 351
>gi|388857175|emb|CCF49188.1| uncharacterized protein [Ustilago hordei]
Length = 428
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 40/225 (17%)
Query: 125 EVVYGLIIANTAVFMLWRIADP---------KFMANNFTISLDNFLSGRLHTLITSAFSH 175
+ V ++ N+ VF W IA K+M+ +F + S RLHT+++S +SH
Sbjct: 174 QAVVPIVAVNSIVFAAWSIASLRRGAGGRMYKWMSRHF---VHRPGSNRLHTMVSSVYSH 230
Query: 176 IDVEHIVSNMIGLYFFGMS--IGRTLG--------------PEYLLKLYMAGAIGGSVFY 219
H+V N I L+ S I + G P +L AG SV +
Sbjct: 231 QAALHLVFNSIALWSISSSALILASTGYAYTNSRIPESCATPHFLAFFTSAGLFASSVSH 290
Query: 220 LVYHAFLAMSSKRQGMWVVDP------SRTPALGASGAVNAIMLLDIFLNPKATLYFDF- 272
+V A+ KR + P +R +LGASGAV A +++ P+A L F
Sbjct: 291 IV----AAIRFKRLSCLLSLPIAKTMMAREASLGASGAVYACLIMSACAFPQAQLGIIFL 346
Query: 273 -FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
F+ VP + L+ D+L ++ G AHLGGAA L W
Sbjct: 347 PFVTVPIGVGVAGLVAVDVLGVLRGWRVFDHWAHLGGAAFGGLYW 391
>gi|330836099|ref|YP_004410740.1| Peptidase S54, rhomboid domain-containing protein [Sphaerochaeta
coccoides DSM 17374]
gi|329748002|gb|AEC01358.1| Peptidase S54, rhomboid domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 255
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 25/226 (11%)
Query: 102 FPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN-----FTIS 156
FP + A + + + Y + LII N VF+L P + +T
Sbjct: 24 FPLATLADMKNSFLNRRLGYSYANYTLRLIIVNILVFILTEYIYPSGYVLSGGQLYYTPG 83
Query: 157 LDNFLS--------GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
+ +L+ G + I+ F H V HI+ NM+GL+ FG + R +G L Y
Sbjct: 84 VTYYLAMRPALVMKGYVWQFISYMFVHSGVSHILFNMLGLFIFGSMVERRIGSREFLLFY 143
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
M I VF + A++A + S +GASG + IML+ P A +
Sbjct: 144 MLTGIVSGVFSFI--AYMAAGT----------SAVSLVGASGVIYGIMLMFATFFPDARI 191
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ PV A +L + ++ I G N++ HL G VA L
Sbjct: 192 FVFGIFPVRAPMLVIIYFAIELFSQIRGGGNVAHLTHLAGLGVAYL 237
>gi|445422784|ref|ZP_21436494.1| peptidase, S54 family [Acinetobacter sp. WC-743]
gi|444756135|gb|ELW80690.1| peptidase, S54 family [Acinetobacter sp. WC-743]
Length = 206
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
+ + N ++ G+ +T F H D H+ NM LYFFG +I E+ +
Sbjct: 26 RHVMNRLIFNISAIKHGQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRNI------EWFFR 79
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
Y++G F L Y + + +++ + + + +LGASGAVNA++ I NP
Sbjct: 80 GYLSGM----GFVLFYCSAIIIAAIPSYLHHRNLNSYRSLGASGAVNAVLFSSILFNPWG 135
Query: 267 TLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN-ISGSAHLGGA 309
+Y + +PVPA + G + M I G+S I AH+ GA
Sbjct: 136 MIYI-YILPVPAIIFGTIYLCYSMYAIRSGHSPLIDHRAHITGA 178
>gi|378973504|ref|YP_005222110.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374677829|gb|AEZ58122.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
SamoaD]
Length = 208
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDV 178
+Y + V L++AN AVF++ + + + L + R++ + T F H V
Sbjct: 9 RYSYTNVTLSLVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGV 66
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H++ NM+GL FFG +I + +G +L Y+ G + G+
Sbjct: 67 WHLLFNMLGLVFFGQTIEKKMGSSEMLLFYLLVGTLCGA-------------GACAAYLC 113
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
V LGASG++ AI+ L + P A +Y IP+PA LL V I ++ +
Sbjct: 114 VGRLNVLLLGASGSIFAILFLFSVMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSR 173
Query: 298 SNISGSAHLGGAAVAALAWARIRRR 322
N+S HL G AW IR R
Sbjct: 174 DNLSHLTHLLG---VLFAWGYIRIR 195
>gi|403052072|ref|ZP_10906556.1| hypothetical protein AberL1_11122 [Acinetobacter bereziniae LMG
1003]
Length = 206
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 12/148 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G+ +T F H D H+ NM LYFFG +I E+ + Y++G F L Y
Sbjct: 42 GQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRNI------EWFFRGYLSGM----GFVLFY 91
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ + +++ + + + +LGASGAVNA++ I NP +Y + +PVPA + G
Sbjct: 92 CSAIIIAAIPSYLHHRNLNSYRSLGASGAVNAVLFSSILFNPWGMIYI-YILPVPAIIFG 150
Query: 283 VFLIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ M I G+S I AH+ GA
Sbjct: 151 TIYLCYSMYAIRSGHSPLIDHRAHITGA 178
>gi|325955051|ref|YP_004238711.1| peptidase S54, rhomboid domain-containing protein [Weeksella virosa
DSM 16922]
gi|323437669|gb|ADX68133.1| Peptidase S54, rhomboid domain protein [Weeksella virosa DSM 16922]
Length = 297
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD-------PKFMANNFTI--SLDNFLSGRLHTLIT 170
+Y S + LI N F I P F +N S N L ++ T
Sbjct: 12 KYKSGNIATKLIYINIIFFFTILIVGFVLKKIFPSFQIDNIIALSSQPNALIKHPWSIFT 71
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H ++ H+ NM+ LY+ R + L Y+ G +GG++FY ++ + + S
Sbjct: 72 YAFLHGELWHLFLNMLLLYYISSMFLRYFRDQDFLTFYILGILGGALFYCLFAGYFSSGS 131
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKD 289
+ +G+S A+ A + NPK + FF P + FL+G D
Sbjct: 132 ------------SYLVGSSAAIYATFFGLVSYNPKIPVRLLFFPNSFPILYIAFFLLGLD 179
Query: 290 MLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ +II+G ++ +H GGAAV L + +
Sbjct: 180 VYQIIDGRNSGGSLSHFGGAAVGYLYMKQFEK 211
>gi|347831994|emb|CCD47691.1| hypothetical protein [Botryotinia fuckeliana]
Length = 598
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V LI+ANT V LWR+ M N + + + + R ++I FSH H + NM
Sbjct: 390 TVSALILANTMVLFLWRVPPCWTMLNKYFMIIPAY--PRALSMIGGVFSHQAFTHFLPNM 447
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS-RTP 244
+ L FG+ + +G L LY +IG + +F +M+ WV + +
Sbjct: 448 VFLAIFGVDLHDEVGRANFLSLYF--SIGAAC------SFASMAG-----WVWKSAFISS 494
Query: 245 ALGASGAVNAIMLLDI-FLNPKATLYFDFFIPVPAFLLGVFLIGKD-----------MLR 292
LGASGAV +M D+ + K +F+ +PA+++ L G + M +
Sbjct: 495 GLGASGAVCGVMAADLWYKRDKGISFFELTPSIPAWVVLGMLFGSEVFAWRRASSAAMKQ 554
Query: 293 IIEGNSNISGSAHLGG-AAVAALAW-ARIRRR 322
++ S+I+G ++GG A + W RIR+R
Sbjct: 555 TLDYQSHITG--YIGGMAGAEVIRWRDRIRKR 584
>gi|407976842|ref|ZP_11157738.1| rhomboid-like protein [Nitratireductor indicus C115]
gi|407427741|gb|EKF40429.1| rhomboid-like protein [Nitratireductor indicus C115]
Length = 255
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 20/161 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ H F+
Sbjct: 74 TYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGAYM----HGFI 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VPAFLLG 282
A S P +GASGA+ I+ + L+P+ ++ F IP +PAF++
Sbjct: 130 APDSN-----------APLIGASGAIAGIVAAYLILHPRIRIWVLAFARIPLRIPAFIVL 178
Query: 283 VFLIG-KDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
IG + ++ +I+ + +S +AH GG A+ ++RR
Sbjct: 179 ALWIGFQFLMLLIDTENQVSWAAHAGGILAGAVLVLVLKRR 219
>gi|291240596|ref|XP_002740208.1| PREDICTED: presenilin associated, rhomboid-like isoform 1
preproprotein-like [Saccoglossus kowalevskii]
Length = 358
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 107 FASFRYRWRSWLRQYGSSEVV-YGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGR 164
F +FR + W + + V G+I AN VF W++ ++ M N F + + + R
Sbjct: 132 FGNFREKINDWYNKLPEGQCVALGIITANVLVFSAWKVPALQYTMLNWFACNPASRV--R 189
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
++ + FSH V HI+ NM L+ F S+ GPE L +Y+ + S F V
Sbjct: 190 CIPMVLATFSHFTVWHILVNMYVLWSFSSSVSEMFGPEQFLAMYLTAGVWSSFFSYVNK- 248
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLG 282
+V P+LGASGA+ A++ P + L F F PA L
Sbjct: 249 ------------LVIGRFHPSLGASGAIFALLGAVCTSYPDSRLQIIFLPFFTFPASLGM 296
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGG 308
+IG + I+ + HL G
Sbjct: 297 KAIIGLETTGILLRWRIFDHAGHLAG 322
>gi|189194767|ref|XP_001933722.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979286|gb|EDU45912.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 268
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 20/216 (9%)
Query: 119 RQYGSSEVVYGLIIANTAVF-----------MLWRIADPKFMANNFTISLDNFLSGRLHT 167
++ + V+Y LI N AVF +++ KFM +++L F +G
Sbjct: 56 QETANKAVLYALIGTNVAVFGYAMYLKQQAMQGYQLPFVKFM-QKMSLNLSEFQNGSYLP 114
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
++T+ F+HID+ H+ SNM +YF G ++ + P L + + + GS+ YL Y+
Sbjct: 115 ILTANFTHIDIGHVFSNMFSVYFLGSFLASAPPITPLRYLTIAIGSGVAGSIGYL-YNRH 173
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ ++ G D +R LG SG+V I + L P + IP+P + L
Sbjct: 174 SLLQAEAPG--TRDTTR--GLGFSGSVMGISTVAACLAPTTKVAIWGIIPMPLWALVTAY 229
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAW-ARIR 320
D + S + + HLGG L + AR+R
Sbjct: 230 AFYDGFYLNSKESRVGHAGHLGGLTFGLLYYFARLR 265
>gi|396483794|ref|XP_003841791.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
gi|312218366|emb|CBX98312.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
Length = 264
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 20/225 (8%)
Query: 99 RAQFPERSFASFRYRWRSWL-RQYGSSEVVYGLIIANTAVF-MLWRIADPKFMAN----- 151
R Q P R S Y + + + V+Y L+ N +VF + + N
Sbjct: 32 RTQIPPRPRLSRSYETNPFASHEKANMRVLYALMAVNVSVFGYAIYVREAARQGNKQPWL 91
Query: 152 ----NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGR--TLGPEYLL 205
N +++LD+ G L TS F+HID+ HI SN+ ++F G + R + P
Sbjct: 92 HFIRNMSLNLDDVRQGHWWLLFTSTFTHIDLSHIFSNLFTVFFLGRFLARHPIITPTRYF 151
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
+ M + GS +L + Q + LG SG V I + L P
Sbjct: 152 VIAMGSGLSGSFGWLA-------NRYAQERNPLSRKYVRGLGFSGVVMGISSVAACLMPS 204
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
A ++ IPVP + L D + + S + + HLGG+A
Sbjct: 205 AKVHLYGIIPVPMWALVAGYAAYDGYYLNDETSKVGHAGHLGGSA 249
>gi|324513031|gb|ADY45374.1| Presenilins-associated rhomboid-like protein [Ascaris suum]
Length = 338
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 90 FFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-F 148
F+D V FF ++ F W W+R + + ++ ANTA+F+LW++ + F
Sbjct: 100 FWDETVDFFGVSAQQQQI--FADEW--WVRMSDGQKTSFYILAANTAIFLLWKVKTLEPF 155
Query: 149 MANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLY-FFGMSIGRTLGPEYLLK 206
M FT +++ S L +I SAFSH H+ NM LY F G+SI R LG + +
Sbjct: 156 MWRWFT---NSYASKALCLPMILSAFSHSHWLHLGINMYVLYSFAGVSIDRFLGLDQFMA 212
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
Y+ A S+ L++ + S + ALGASGA+ A++ P A
Sbjct: 213 FYVTAASISSLTSLLHKCAIGSSVR-------------ALGASGAILAVLAYTCVRIPDA 259
Query: 267 TLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGSAHLGG 308
L F+P F +IG D ++ +AHLGG
Sbjct: 260 RLQI-VFVPALNFSAQSAVIGLVLFDFAGLLLRFRLFDHAAHLGG 303
>gi|194366439|ref|YP_002029049.1| rhomboid family protein [Stenotrophomonas maltophilia R551-3]
gi|194349243|gb|ACF52366.1| Rhomboid family protein [Stenotrophomonas maltophilia R551-3]
Length = 208
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG V +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLT--YPAFYIGALVV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIVYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDKRGGDRINHSAHLAGAAFGVI 181
>gi|156936920|ref|YP_001434716.1| rhomboid family protein [Ignicoccus hospitalis KIN4/I]
gi|156565904|gb|ABU81309.1| Rhomboid family protein [Ignicoccus hospitalis KIN4/I]
Length = 258
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R +TL+T + H +EHI NM+ LY FG ++ LG L LY+ +G VF+L+
Sbjct: 75 REYTLLTHMWLHGSLEHIAGNMLFLYIFGDNVEAVLGRRGYLALYLLSGLGAVVFHLL-S 133
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--- 280
L S +P TPA+GASGA++ ++ + P A + F P P +
Sbjct: 134 VMLTPSIILNPYLRQNPWLTPAIGASGAISGVLAAYMLFFPHAQVMTLVFAPYPLLIPIR 193
Query: 281 LGVFLIGKDMLRIIEGNSNISGS-------AHLG----GAAVAALAWARIR 320
VF+ + ++I G ++SG AH+G GAA+A L R R
Sbjct: 194 ASVFIGLWFLYQLIMGTWSLSGMPTGVAWWAHIGGFLTGAALAYLLADRNR 244
>gi|328862958|gb|EGG12058.1| putative presenilin associated, rhomboid-like protein [Melampsora
larici-populina 98AG31]
Length = 464
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 41/223 (18%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++ L +AN +F+LW++ +M +NFT N LSG+ HT++TS FS H
Sbjct: 223 QICLVLALANLPIFLLWQLPRMTSYMTSNFT---HNPLSGKSHTILTSVFSQASALHFGF 279
Query: 184 NMIGLYFFGMSIGRTLG--------------PE-----YLLKLYM-AGAIGGSVFYLVYH 223
NM+ LY G + +L PE + L Y+ AG G H
Sbjct: 280 NMMALYSIGSTAHDSLTHRFRASRDYDPVRIPESTPTYHFLAFYLFAGLFAG----FASH 335
Query: 224 AF-LAMSSKRQGMWVVDPSRT--------PALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
AF L + + R W S T P+LGASGA+ + + P A + F+
Sbjct: 336 AFSLVVRAPRLLRWRQGTSNTTVVPTPILPSLGASGAIYGCLTMTALAFPDAQVSL-IFL 394
Query: 275 PVPAFLLGVFLIGK---DMLRIIEGNSNISGSAHLGGAAVAAL 314
P +G + G D++ +I +AHLGGA L
Sbjct: 395 PWIPINIGGAVTGAVLFDLMGVIRNWKFFDHAAHLGGAFAGVL 437
>gi|198459459|ref|XP_001361382.2| GA21446 [Drosophila pseudoobscura pseudoobscura]
gi|198136697|gb|EAL25960.2| GA21446 [Drosophila pseudoobscura pseudoobscura]
Length = 349
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 23/217 (10%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYG-LIIANTAVFMLWRIADPKFMANNFTISL 157
R+ S++ + R + + E V+ + + N VF LWR+ P+ A T
Sbjct: 117 RSLVERSSWSQLKLEIRQYWDNLNTGEKVFAPICLVNLLVFGLWRV--PRLRATMITYFT 174
Query: 158 DNFLSGRLHT--LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
N + R+ + S FSH HI +NM L+ F + +LG E L LYM+ +
Sbjct: 175 SN-PAARIVCWPMFLSTFSHYSAMHIFANMYVLHSFANAAASSLGKEQFLALYMSAGVFS 233
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
S+ ++Y A +++ GM +LGASGA+ ++ P L F+P
Sbjct: 234 SLISILYKA----GTRQVGM---------SLGASGAIMTVLAYVCAQYPDTQLSI-LFLP 279
Query: 276 VPAFLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F ++G D + G +AHLGGA
Sbjct: 280 ALTFSASAGIKVIMGIDFAGCVMGWKFFDHAAHLGGA 316
>gi|160900746|ref|YP_001566328.1| rhomboid family protein [Delftia acidovorans SPH-1]
gi|160366330|gb|ABX37943.1| Rhomboid family protein [Delftia acidovorans SPH-1]
Length = 496
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 22/149 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT+AF H+D H+V NM+ L+ FG S+ LG L Y+ GA+GGSV
Sbjct: 152 TWITAAFLHVDTSHLVGNMLFLFMFGFSVELMLGRGTYLLFYLLGAVGGSVL-------- 203
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIM-LLDIFLNPKAT-----LYFDF-FIPVPAF 279
W + + LGASGAV A+M + + + L+F F ++ PA
Sbjct: 204 -------SGWAYAGTGSYGLGASGAVAALMGMYAVMYRLRRVRFFYQLFFYFNYVTAPAL 256
Query: 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
+L I ++L+ + AHLGG
Sbjct: 257 ILLPAWIANEVLQHFFSGQSAGYMAHLGG 285
>gi|239814367|ref|YP_002943277.1| rhomboid family protein [Variovorax paradoxus S110]
gi|239800944|gb|ACS18011.1| Rhomboid family protein [Variovorax paradoxus S110]
Length = 492
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
P +++ D + T IT+AF H D H++ NM+ L+ FG S+ LG L
Sbjct: 132 PASFTQRWSLDHDKGAEPKPWTWITAAFLHADTGHLLGNMLFLFLFGFSVELALGRGTYL 191
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM--------L 257
Y+ GA G S+ W + LGASGA++A+M L
Sbjct: 192 AFYLLGAAGSSLL---------------SGWAYAGNGGHGLGASGAISALMGMYAVMYRL 236
Query: 258 LDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
I + YF+ ++ PA LL I ++++ G+ ++ AHLGG
Sbjct: 237 RRIRFFYQLFFYFN-YVTAPALLLLPAWIANELMQQWRGDQSVGYMAHLGG 286
>gi|410924341|ref|XP_003975640.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Takifugu rubripes]
Length = 380
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
V G+I N V WRI + M FT + + + +I S+FSH + H+++N
Sbjct: 165 TVTGIIAVNAVVLCCWRIPIMQRSMIKYFTSNPAS--KTKCLPMILSSFSHYSIIHMMAN 222
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
M L+ F I LG E L +Y+ AG I V Y+
Sbjct: 223 MYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYICK--------------TTTGRLY 268
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNI 300
P+LGASGAV A++ P+A L F+P+ F G LI D +I G +
Sbjct: 269 PSLGASGAVMAVLAAVCTKVPEAKLGI-IFLPMLTFSAGSALKALIAIDAAGLILGWRLL 327
Query: 301 SGSAHLGGA 309
+AHLGGA
Sbjct: 328 DHAAHLGGA 336
>gi|397689480|ref|YP_006526734.1| rhomboid family protein [Melioribacter roseus P3M]
gi|395810972|gb|AFN73721.1| rhomboid family protein [Melioribacter roseus P3M]
Length = 231
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
+++F + T+ TS F H HI SNM+ LY FG ++ LG S
Sbjct: 53 INDFDIYEISTIYTSMFLHGGWAHIFSNMLALYIFGDNVEDRLG---------------S 97
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-------TLY 269
YL+++ ++ +++ S P +GASGA++ +M IFL P+A L+
Sbjct: 98 FRYLIFYLLTGTAAALLHIYLNQDSVIPTVGASGAISGVMAAYIFLYPRAKVITLFPILF 157
Query: 270 FDFFIPVPAFLL-GVFLIGK---DMLRIIEGNSNISGS---AHLGGAAVAAL 314
FFI +PA + GV+ I + +L I+ + G AH+GG A+
Sbjct: 158 IPFFIDIPALVYTGVWFITQFFSGLLSIVSNTAAFGGVAYWAHVGGFVAGAV 209
>gi|432952460|ref|XP_004085084.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oryzias latipes]
Length = 364
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVS 183
V G+I N AVF+ WR+ + M FT N S L + ++ S FSH H+ +
Sbjct: 151 TVTGIIAVNAAVFLCWRVPSLQRSMVKYFT---SNPASKTLCSPMLLSTFSHFSFFHMAA 207
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM L+ F S LG E + +Y+ AG + V Y+ M++ R G
Sbjct: 208 NMYVLWSFSSSAVSMLGREQFMAVYLSAGVVSSFVSYVG-----KMATGRFG-------- 254
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSN 299
P+LGASGA+ I+ + P+A L F+P+ F L + D ++ G
Sbjct: 255 -PSLGASGAIMTILAVVCTKMPEAKLAI-IFLPMFTFTAANALKAIVAMDTAGLVLGWKF 312
Query: 300 ISGSAHLGGA 309
+AHLGGA
Sbjct: 313 FDHAAHLGGA 322
>gi|357023490|ref|ZP_09085681.1| rhomboid family protein [Mesorhizobium amorphae CCNWGS0123]
gi|355544604|gb|EHH13689.1| rhomboid family protein [Mesorhizobium amorphae CCNWGS0123]
Length = 267
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI N VF++ I F N +SL F+ +H
Sbjct: 11 LRHIRLQYVTIGLIAVNALVFLITSIGGENF-KNAAVLSL-GFIPSVVHDRVELSPEFVV 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T AF H D+ H+ NM+ L+ FG ++ LG L Y+ A G+ F
Sbjct: 69 IPESLSYLTYAFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAAAGAFF--- 125
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VP 277
QG+ D S+ P +GASGA+ ++ + L P+ ++ F IP +P
Sbjct: 126 -----------QGLVAWD-SQVPLIGASGAIAGVVAAYLILYPRVKVWVLAFARIPLRIP 173
Query: 278 AFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
AF+ L ++++ + ++ G +S + H+GG A+ +RRRG
Sbjct: 174 AFIPLILWIVFQIVMFAAGGEDQVSWACHIGGIIAGAVLVLVLRRRG 220
>gi|257454659|ref|ZP_05619915.1| rhomboid family protein [Enhydrobacter aerosaccus SK60]
gi|257447969|gb|EEV22956.1| rhomboid family protein [Enhydrobacter aerosaccus SK60]
Length = 209
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G++ +T F H D H+ NM LY FG ++ ++ KL G++G +FYL
Sbjct: 42 GQVDRFVTHGFIHADGMHLFFNMFTLYSFGQAVQGL----FMSKL---GSLGFVLFYL-- 92
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A L ++ + + R +LGASGAV+A++ I +NP +TL F IPVPA +
Sbjct: 93 -AALVVAIVPTYLKQKNNPRYSSLGASGAVSAVIFSYILMNPWSTLLL-FVIPVPAIVFA 150
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
V + + +G +I+ SAHL G LA I
Sbjct: 151 VAYVAYSVWADGQGRGSINHSAHLVGGIFGMLATIAIE 188
>gi|15789622|ref|NP_279446.1| hypothetical protein VNG0361C [Halobacterium sp. NRC-1]
gi|169235334|ref|YP_001688534.1| rhomboid family protein [Halobacterium salinarum R1]
gi|10579980|gb|AAG18926.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726400|emb|CAP13183.1| rhomboid family protein [Halobacterium salinarum R1]
Length = 333
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY----LVY 222
T +TS F+H HIV N I LYFFG + +G + + L++ I + L+
Sbjct: 140 TWVTSVFAHGGFSHIVLNSIVLYFFGPIVEDRIGSKKFVALFLGAGILAGLAQVGASLLA 199
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ A+ + + G ++ + + LGASGA+ A+M + LNP +Y F IP+P +L
Sbjct: 200 NPGPAVIASQNGRLLISDAFSATLGASGAIAALMGVLTLLNPGLRIYLYFVIPMPLWLAT 259
Query: 283 VFLIGKDML---RIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ G ++ AHL G + L A+++R G
Sbjct: 260 GLFAAYSIFVSGTGGIGAGGVAQLAHLAGLGIGLLYGAKLKREG 303
>gi|340621609|ref|YP_004740061.1| hypothetical protein Ccan_08360 [Capnocytophaga canimorsus Cc5]
gi|339901875|gb|AEK22954.1| P-beta [Capnocytophaga canimorsus Cc5]
Length = 285
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
T+IT AF H H+ NM L+F G + L Y G I GG F LVY F
Sbjct: 61 TIITYAFHHASFSHLFWNMFLLFFVGQIFLNLFHKKQFLSTYFLGVIFGGITFLLVYRFF 120
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
D T +GASG + +++ P + F + V + +GVF+
Sbjct: 121 FN-----------DLENTVLVGASGGIMCLLIFLCTTVPNYGVNLLFNLRVKLWHIGVFM 169
Query: 286 IGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRRR 322
I D+L+I +SN SG H GG A+A L W R+
Sbjct: 170 IVFDVLQI---SSNTSGRIVHFGG-ALAGLLWGLYTRQ 203
>gi|400289188|ref|ZP_10791220.1| rhomboid-like protein [Psychrobacter sp. PAMC 21119]
Length = 202
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ +T F H D H++ NM LYFFG +I E L + ++ G G VFY++
Sbjct: 38 NGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAI------EGLYQSFLFG-YGFVVFYVL 90
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+ S + + + +LGASG V+A++ I L P +Y +P+PA L
Sbjct: 91 AIIIAMIPSYIKNK---NNASYLSLGASGGVSAVLFAFILLAPWEKIYLFAVVPIPAILF 147
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
V + + G SNI+ AHL G A +A
Sbjct: 148 AVAYVAYSIYADKRGGSNINHMAHLWGGAFGIIA 181
>gi|336262207|ref|XP_003345888.1| hypothetical protein SMAC_06289 [Sordaria macrospora k-hell]
gi|380088959|emb|CCC13071.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 329
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM---IGLYFFGMSIGRTLGPEYLLKLY 208
+ TISLDN G T+ TSA SH ++EHI NM I L G+++G + G L +
Sbjct: 147 HLTISLDNLAQGSWWTMFTSAVSHQNLEHIGKNMLTFISLATMGINMGLSNG--QLFCVC 204
Query: 209 MAGAIGGS---VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
+ A+ GS +++ V S+RQG + +R LGASG V+ + + P
Sbjct: 205 LGSAVSGSMAQLWHFVRKVEGDRQSRRQG---IIQTRY-GLGASGIVSGLSVALAVAFPY 260
Query: 266 ATLYFD---FFIP--VPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
A + D IP VP +++ D+ + + +S I +AHLGGA L
Sbjct: 261 AAMRVDVPLLTIPPTVPLWVIPFGSFAYDLWMLGDDSSKIGHAAHLGGALFGGL 314
>gi|398343437|ref|ZP_10528140.1| intramembrane serine protease [Leptospira inadai serovar Lyme str.
10]
Length = 199
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
+ I TA F L+ + +P+ + + GR +TLITSAF H D+ H++ NMI L
Sbjct: 5 ITIGITAAFSLYALMGNPELLEKFLLRPFRDSRQGRYYTLITSAFLHSDIFHLMFNMITL 64
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA--- 245
YFFG ++ T+G + +Y+A + S G+ ++ PA
Sbjct: 65 YFFGPAVEYTIGGLGFVGIYLAAILAAS-----------------GVSLLKNKDNPAYGT 107
Query: 246 LGASGAVNAIMLLDIFLNPKATLY 269
LGASG + I+ + P++++Y
Sbjct: 108 LGASGGTSGIVFASVLFYPQSSIY 131
>gi|448323638|ref|ZP_21513096.1| rhomboid family protein [Natronococcus amylolyticus DSM 10524]
gi|445599534|gb|ELY53567.1| rhomboid family protein [Natronococcus amylolyticus DSM 10524]
Length = 300
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T TS F+H HIV N I ++FFG + R +G L L++ +GA+ G
Sbjct: 120 TWFTSIFAHGGFLHIVFNSIVIFFFGPLVERYVGSRDFLGLFLISGAVAG---------- 169
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG--- 282
Q + V P +GASGA AIM + LNP T+Y F +PVP ++L
Sbjct: 170 -LSQIGIQILQGVPPGFGGVVGASGAALAIMGVLTILNPNLTVYLYFILPVPLWILAAGT 228
Query: 283 ----VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
VF IG G NI+ +AHL G V LA+ +R
Sbjct: 229 AVISVFFIGTG------GGGNIAHAAHLVG-LVIGLAYGEYIKR 265
>gi|154314714|ref|XP_001556681.1| hypothetical protein BC1G_04066 [Botryotinia fuckeliana B05.10]
Length = 473
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V LI+ANT V LWR+ M N + + + + R ++I FSH H + NM
Sbjct: 265 TVSALILANTMVLFLWRVPPCWTMLNKYFMIIPAY--PRALSMIGGVFSHQAFTHFLPNM 322
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS-RTP 244
+ L FG+ + +G L LY +IG + +F +M+ WV + +
Sbjct: 323 VFLAIFGVDLHDEVGRANFLSLYF--SIGAAC------SFASMAG-----WVWKSAFISS 369
Query: 245 ALGASGAVNAIMLLDI-FLNPKATLYFDFFIPVPAFLLGVFLIGKD-----------MLR 292
LGASGAV +M D+ + K +F+ +PA+++ L G + M +
Sbjct: 370 GLGASGAVCGVMAADLWYKRDKGISFFELTPSIPAWVVLGMLFGSEVFAWRRASSAAMKQ 429
Query: 293 IIEGNSNISGSAHLGG-AAVAALAW-ARIRRR 322
++ S+I+G ++GG A + W RIR+R
Sbjct: 430 TLDYQSHITG--YIGGMAGAEVIRWRDRIRKR 459
>gi|374585119|ref|ZP_09658211.1| Rhomboid family protein [Leptonema illini DSM 21528]
gi|373873980|gb|EHQ05974.1| Rhomboid family protein [Leptonema illini DSM 21528]
Length = 283
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 130 LIIANTAVFML---WRIADPKFMANNF----TISLDNFLSGRLHTLITSAFSHIDVEHIV 182
L+IANT + +L W +++P F F + +F GR++ +TS F H H++
Sbjct: 10 LVIANTGIHILLFWWAVSNPGFYIQGFYDQWGLVPADFWHGRVYQPLTSMFLHGGWLHLL 69
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NMI L+ G +I T+G LY+ + G++F +V+ + L
Sbjct: 70 VNMIALWSLGTAIEMTVGAMRFGLLYIFSGLTGALFVVVFQSDLG--------------- 114
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL-IGKDMLRIIEGNSNIS 301
P +GASGA+ ++ P++ + FF P+ A + + + +L I + +S IS
Sbjct: 115 DPTVGASGAIMGLLAAIAVFYPRSEMLI-FFFPMKARTAAIVIGVASVLLSIYDRSSGIS 173
>gi|319781309|ref|YP_004140785.1| rhomboid family protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167197|gb|ADV10735.1| Rhomboid family protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 38/227 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI+AN V+++ + F +N + L F+ +H
Sbjct: 11 LRHIRLQYVTIGLIVANALVYLVTALGGESF-SNAAVLGL-GFIPSVVHDTAELDPRFIV 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AI G+ F
Sbjct: 69 IPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAF--- 125
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VP 277
QG+ D S+ P +GASGA+ +++ + L P+ ++ F IP +P
Sbjct: 126 -----------QGLVAWD-SQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIP 173
Query: 278 AFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
AF+ L ++++ + ++ G IS + H+GG A+ +R RG
Sbjct: 174 AFIPLILWVLFQVVMFAAGGEDQISWACHIGGIIAGAVLVLVLRSRG 220
>gi|390943212|ref|YP_006406973.1| hypothetical protein Belba_1611 [Belliella baltica DSM 15883]
gi|390416640|gb|AFL84218.1| putative membrane protein [Belliella baltica DSM 15883]
Length = 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++T F H + HI+ NM+ LY+FGM + LG L LY+ G I G++FY++ +
Sbjct: 72 SILTYMFLHEGIFHILFNMLFLYWFGMLVNEYLGSRKLANLYILGGIAGALFYVLMYNIS 131
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ S V+ S+ LGAS V AI++ L+P T F V + +F +
Sbjct: 132 PLFSD-----VISASKM--LGASAGVYAIVVGAATLSPNTTFRLIFIGDVKIKYIAIFYV 184
Query: 287 GKDMLRIIEGNSNISGS-AHLGGAAVA 312
SN G AHLGGAA+
Sbjct: 185 VIAFAN--SAGSNAGGELAHLGGAAMG 209
>gi|149177821|ref|ZP_01856420.1| cytoplasmic membrane protein [Planctomyces maris DSM 8797]
gi|148843311|gb|EDL57675.1| cytoplasmic membrane protein [Planctomyces maris DSM 8797]
Length = 284
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 27/199 (13%)
Query: 119 RQYGSSE---VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFS 174
R +G+S + ++IAN AVF++ P + N + ++F S ++ L+T F
Sbjct: 20 RSFGASSGGWAIKYILIANIAVFLV-EWGAPTIL-NYLALDRESFFSSFQIWRLLTYGFC 77
Query: 175 H-IDV-EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
H + V HI+ NM L+ FG ++ LG L Y++ +
Sbjct: 78 HSLKVPTHIIFNMFVLWMFGRAVEPILGSREFLTFYLSAIV------------------I 119
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLR 292
G+ + S P +GASG V A++ L P+ T+ F IP+ L V D+
Sbjct: 120 SGLCHIGISPNPVIGASGGVMAVVFLTAMYFPRMTVLLFFVIPIELRWLAVLYAAVDLFG 179
Query: 293 IIE-GNSNISGSAHLGGAA 310
I G ++ AHLGGAA
Sbjct: 180 FINPGGDAVAHFAHLGGAA 198
>gi|435847864|ref|YP_007310114.1| putative membrane protein [Natronococcus occultus SP4]
gi|433674132|gb|AGB38324.1| putative membrane protein [Natronococcus occultus SP4]
Length = 315
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I ++FFG + R +G L L++ I G+V L
Sbjct: 132 TWVTSIFAHGGFLHIVFNSIVIFFFGPLVERYVGSRDFLGLFL---ISGAVAGLSQIGIQ 188
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ QG V P +GASGA AI+ + LNP T+Y F +PVP ++L
Sbjct: 189 IL----QG---VPPGFGGVVGASGAALAILGVLTILNPNLTVYLYFILPVPLWILAA--- 238
Query: 287 GKDMLRII----EGNSNISGSAHLGGAAVAALAWARIRR 321
G ++ +I G NI+ +AHL G V I+R
Sbjct: 239 GTALISVIFIGTGGGGNIAHAAHLVGLVVGLGYGEYIKR 277
>gi|190575121|ref|YP_001972966.1| transmembrane rhomboid family protein [Stenotrophomonas maltophilia
K279a]
gi|424669431|ref|ZP_18106456.1| hypothetical protein A1OC_03036 [Stenotrophomonas maltophilia
Ab55555]
gi|190013043|emb|CAQ46675.1| putative transmembrane rhomboid family protein [Stenotrophomonas
maltophilia K279a]
gi|401071502|gb|EJP80013.1| hypothetical protein A1OC_03036 [Stenotrophomonas maltophilia
Ab55555]
gi|456736675|gb|EMF61401.1| Hypothetical protein EPM1_2208 [Stenotrophomonas maltophilia EPM1]
Length = 208
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG + +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLT--YPAFYIGALLV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIVYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDKRGGDRINHSAHLAGAAFGVI 181
>gi|386821651|ref|ZP_10108867.1| putative membrane protein [Joostella marina DSM 19592]
gi|386426757|gb|EIJ40587.1| putative membrane protein [Joostella marina DSM 19592]
Length = 215
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
ITS F H+D+ H++ NM+ LYFF + + LG L +Y + GS+ L +H
Sbjct: 47 ITSGFLHVDISHLLFNMLTLYFFAPIVVQYLGDVKFLIIYFISLLAGSLLSLSFHK---- 102
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIG 287
+ A+GASGAV I+ I L P+ L F F IP+PA++ G+ +
Sbjct: 103 ----------NDYHYSAVGASGAVTGILYAAILLQPEMRLAFFFIPIPIPAYIFGIGYLL 152
Query: 288 KDMLRIIEGNSNISGSAHLGGA 309
+ + NI +AH GGA
Sbjct: 153 YSIYGMKARLGNIGHTAHFGGA 174
>gi|281424725|ref|ZP_06255638.1| rhomboid family protein [Prevotella oris F0302]
gi|281401095|gb|EFB31926.1| rhomboid family protein [Prevotella oris F0302]
Length = 319
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 32/215 (14%)
Query: 126 VVYGLIIANTAVF-MLWRIADPKFMANNFTISLDN------FLSGRLH--TLITSAFSHI 176
+ L+I N F M+W FM I L+N FL+ H L+T F H
Sbjct: 7 ITKNLLIVNVVAFLMMWIFQGMNFMGGG-PIDLNNIFGLHFFLASDFHFYQLVTYMFMHA 65
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV---------FYLVYHAFL- 226
++EHI NM L+ FGM + GP L Y+ IG V FY+ + +
Sbjct: 66 NLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGVFQEAAQFVSFYMTVSSQVP 125
Query: 227 --AMSSKRQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
A+S + + P + +GASGAV AI+L + P L F IP+P +
Sbjct: 126 SFALSQFPEIAHQLSPMLNNWTTVGASGAVYAILLAFGMIFPNEKL---FIIPIPVPIKA 182
Query: 283 VFLI----GKDML-RIIEGNSNISGSAHLGGAAVA 312
+ + G ++ + N++ AHLGG V
Sbjct: 183 KWFVMIYAGIELFAAMATTGDNVAHLAHLGGMVVG 217
>gi|416935319|ref|ZP_11933944.1| uncharacterized membrane protein [Burkholderia sp. TJI49]
gi|325525203|gb|EGD03072.1| uncharacterized membrane protein [Burkholderia sp. TJI49]
Length = 197
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 35/212 (16%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL-----------SGRLHT--LITSA 172
+ Y LI+ N AVF IA+ A+ + + +D F + H L+T +
Sbjct: 1 MTYALILVNVAVF----IAE----ASGWPMLIDQFALWPPARPGAPATPDFHVWQLLTYS 52
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
H + HI NM GLY FG + LG L LY+A + G++ L
Sbjct: 53 VLHASLAHIAFNMFGLYMFGRDVEHVLGRARFLALYLASVLAGAITQLAV---------- 102
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDML 291
+ + PS P +GAS V ++ L PK + F +P+PA+L ++L
Sbjct: 103 --IRALPPSDAPTVGASAGVFGALIAYAVLFPKRRVVLLFPPVPMPAWLFATGYALTELL 160
Query: 292 RIIEGN-SNISGSAHLGGAAVAALAWARIRRR 322
+ G+ S ++ AHLGG A + A R+R
Sbjct: 161 SGLSGDTSGVAHFAHLGGMLGALVCLAFWRKR 192
>gi|398348471|ref|ZP_10533174.1| intramembrane serine protease [Leptospira broomii str. 5399]
Length = 199
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
+ I TA F L+ + +P+ + + GR +TLITSAF H D+ H++ NMI L
Sbjct: 5 ITIGITAAFSLYALMGNPELLEKFLLRPFRDSREGRYYTLITSAFLHSDIFHLMFNMITL 64
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA--- 245
YFFG ++ T+G + +Y + A LA S G+ + PA
Sbjct: 65 YFFGPAVEYTIGGLGFVGIY-------------FTAILAAS----GVSFLKNKDNPAYGT 107
Query: 246 LGASGAVNAIMLLDIFLNPKATLY-FDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
LGASG + I+ + P++++Y F IP+PA + + +G +G ++ A
Sbjct: 108 LGASGGTSGIVFASVLFYPQSSIYMFLIPIPIPAPIFALAYLGYTYYASKKGQDGVNHDA 167
Query: 305 HLGGAAVAALAWA 317
HL G A+A +A+A
Sbjct: 168 HLYG-ALAGIAYA 179
>gi|121702153|ref|XP_001269341.1| rhomboid family protein, putative [Aspergillus clavatus NRRL 1]
gi|119397484|gb|EAW07915.1| rhomboid family protein, putative [Aspergillus clavatus NRRL 1]
Length = 568
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 32/223 (14%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSA 172
R W ++ V +I N A+++LW + + N + I++ + R +++ S
Sbjct: 348 RMWPDIPPAAATVLAIIGGNLAIYLLWCLPPAWRLLNRYFINV----AARPQPISIVGSV 403
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
FSH V+H+ NM+ L+F G + +G L LYMA GS+ L H L
Sbjct: 404 FSHQQVQHLGVNMLMLWFIGTRLHDDIGRGQFLGLYMAAGAFGSMASLTVHVLLGNLM-- 461
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVF 284
T +LGASGA++ I+ L+ + FF+P V ++L
Sbjct: 462 ----------TTSLGASGAISGIVAAWCLLHSEEKFTI-FFLPHEWHEVISVKGWILLAG 510
Query: 285 LIGKDMLRIIEGN--SNISGSAHLGG---AAVAALAWARIRRR 322
LI + ++ + + AHLGG V A AW R R
Sbjct: 511 LIAFETFNLVSRYRVARLDHWAHLGGYLVGGVWATAWKREHDR 553
>gi|313127219|ref|YP_004037489.1| hypothetical protein Hbor_24880 [Halogeometricum borinquense DSM
11551]
gi|448288309|ref|ZP_21479509.1| hypothetical protein C499_16007 [Halogeometricum borinquense DSM
11551]
gi|312293584|gb|ADQ68044.1| uncharacterized membrane protein [Halogeometricum borinquense DSM
11551]
gi|445569828|gb|ELY24398.1| hypothetical protein C499_16007 [Halogeometricum borinquense DSM
11551]
Length = 301
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 167 TLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T +TS F+H HIV N I LYFFG + R +G L++ +
Sbjct: 127 TWVTSIFAHSRFSFFHIVGNSIVLYFFGPLVERYIGSRKFTLLFLGSGM----------- 175
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
+S GM + RT LGASGA+ AI+ + LNP +Y F IP+P +L +
Sbjct: 176 LAGLSHVGVGMLLEPGVRTGVLGASGAIFAILGVLTVLNPNLKIYLYFLIPIPLWLFTLG 235
Query: 285 LIGKDMLRIIE-------GNSNISGSAHLGGAAVAALAWARIRRR 322
G ++ ++ G ++ AHL G + R++ R
Sbjct: 236 FAGLSIVFFLQPGAAASVGQGEVAHFAHLIGLIIGLAYGQRVKGR 280
>gi|325281187|ref|YP_004253729.1| Rhomboid family protein [Odoribacter splanchnicus DSM 20712]
gi|324312996|gb|ADY33549.1| Rhomboid family protein [Odoribacter splanchnicus DSM 20712]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ +I+ F H D H+ NM + FG I T YL G F L+Y
Sbjct: 41 YRIISHGFVHADWVHLFVNMFTFWSFGKYIEETF--RYL-------GFGEGAFLLLYFGG 91
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ ++S + + + ++GASGAV+A++ IFLNP + IP+P L G+
Sbjct: 92 MVVASASDVIRYRNAAWYTSIGASGAVSAVLFTAIFLNPWDKILLFAVIPIPGILFGLLY 151
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ +G+ NI+ +AH GA
Sbjct: 152 LAYCQYMARQGSDNINHNAHFYGA 175
>gi|429749212|ref|ZP_19282347.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429168857|gb|EKY10667.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 212
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF--YLVYHAF 225
L++S F H D +H++ NM+ L+FF + R++G L +Y I GS+F YL
Sbjct: 44 LVSSGFLHADWQHLILNMVSLFFFQGLLIRSIGSVLFLVVYFGAMIAGSLFSWYL----- 98
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPAFLLGVF 284
+RQ W A+GASGAV+ I+ I LNP T+ F +P +L G F
Sbjct: 99 ----YQRQ--W-----YYSAIGASGAVSGIIFAAIALNPTGITVNF-----LPGWLFGAF 142
Query: 285 LIGKD---MLRIIEGNSNISGSAHLGGAAVAAL 314
M EG+ NI +AHLGGA L
Sbjct: 143 YFAYSAFMMFNPSEGD-NIGHAAHLGGAVFGLL 174
>gi|409439260|ref|ZP_11266319.1| conserved membrane hypothetical protein [Rhizobium mesoamericanum
STM3625]
gi|408749165|emb|CCM77498.1| conserved membrane hypothetical protein [Rhizobium mesoamericanum
STM3625]
Length = 261
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T +F H H+ NM+ L+ FG ++ +G L Y+ A G++ H +
Sbjct: 75 TYVTYSFVHSGFWHLAPNMLFLWVFGDNVEDAMGHLRFLFFYLLCAAAGALV----HGLV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
+S+ P +GASGA++ +++ + L+P+ ++ +P+PAF+
Sbjct: 131 GTTSE-----------APLVGASGAISGVVMAYVVLHPRVKVWVLVLMRVPLPLPAFVPL 179
Query: 283 VFLIGKD-MLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ +G+ ++ ++E + +IS AH+GG L +RR G
Sbjct: 180 LLWVGQQFLMLVLEPDGSISWGAHVGGIVAGGLLVLVMRRHG 221
>gi|124004456|ref|ZP_01689301.1| rhomboid family protein [Microscilla marina ATCC 23134]
gi|123990028|gb|EAY29542.1| rhomboid family protein [Microscilla marina ATCC 23134]
Length = 300
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AFSH D+ HIV NM+ LY+FGM + L + L+ LY+ GA+ G+V Y++ + F
Sbjct: 63 TVLTYAFSHHDLLHIVFNMLTLYWFGMLVSEYLNSKRLISLYVLGALAGAVSYILIYNFF 122
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ G LGASGAV A+++ L P + + F PV + L+
Sbjct: 123 PGAKTGMG--------GTMLGASGAVFAVVVGAATLMPNYSFHLIFIGPVRIKYIAALLV 174
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ + + G + AHLGGA + L + R
Sbjct: 175 LLSVFQ-LRGMNAGGQVAHLGGALMGYLFVVSLNR 208
>gi|430376120|ref|ZP_19430523.1| rhomboid family protein [Moraxella macacae 0408225]
gi|429541351|gb|ELA09379.1| rhomboid family protein [Moraxella macacae 0408225]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 12/186 (6%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
+IIA T L PK M + G++ +T H D H+ NM L+
Sbjct: 5 IIIALTVAVSLLAWQSPKLM-DRLIFYPPAIQRGQVERFVTHGLLHADGMHLFFNMFTLF 63
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGAS 249
FG + R A+G +FY V + S + + R +LGAS
Sbjct: 64 SFGQVVERFFASR-------VSAVGYLLFYAVAIVVAILPSFVKHK---NDHRYSSLGAS 113
Query: 250 GAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
GAV+A++ + +NP ATL FF+PVPA + +G + G N++ +AHL G
Sbjct: 114 GAVSAVVFSYVLMNPWATL-LVFFVPVPAIVFAGLYVGYSVWADGHGRGNVNHAAHLVGG 172
Query: 310 AVAALA 315
LA
Sbjct: 173 VFGMLA 178
>gi|344208088|ref|YP_004793229.1| rhomboid family protein [Stenotrophomonas maltophilia JV3]
gi|343779450|gb|AEM52003.1| Rhomboid family protein [Stenotrophomonas maltophilia JV3]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG + +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLT--YPAFYIGALLV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIIYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDKRGGDRINHSAHLAGAAFGVI 181
>gi|440893528|gb|ELR46263.1| Presenilins-associated rhomboid-like protein, mitochondrial [Bos
grunniens mutus]
Length = 355
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 243 FMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288
Query: 263 NPKATLYFDFFIPVPAFLLG 282
P+ L F+P+ F G
Sbjct: 289 IPEGRLAI-IFLPMFTFTAG 307
>gi|332027836|gb|EGI67898.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Acromyrmex echinatior]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 105 RSFASFRYRWRS-----WLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
R F R W+S W ++ + NT +F+LWR+ K M F +
Sbjct: 101 RQFRIKRTGWKSEMEAWWQNLTEGQKMFVPICFINTVIFLLWRVPTLQKTMVRYFCANPA 160
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
+ S +++ S FSH + H+ +NM L+ F LG E L LY++ + S
Sbjct: 161 S--SASCWSMVLSTFSHYSIIHLAANMYVLHSFSTIAVTALGKEQFLALYLSSGVISSFA 218
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
VY + M +LGASGA+ I+ P L F+P+
Sbjct: 219 SHVYKSIFGMPG-------------LSLGASGAIMGILGFVCTQYPDIRLSI-VFLPILT 264
Query: 279 FLLGVFLIGK---DMLRIIEGNSNISGSAHLGGA 309
F G+ + G D++ I G +AHLGGA
Sbjct: 265 FTAGMAIKGIMALDVVGCILGWKYFDHAAHLGGA 298
>gi|167565767|ref|ZP_02358683.1| serine protease, rhomboid family protein [Burkholderia oklahomensis
EO147]
Length = 201
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T + H + H++ NM+GL FG + R+LG LY+A + G++ LV + A
Sbjct: 50 IVTYSALHAGLSHLIFNMLGLVMFGRDVERSLGRARFGTLYLASVVCGALTQLVVARYTA 109
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLI 286
P +GAS V ++ L P + F IP+PA++ +
Sbjct: 110 TGGA------------PTIGASAGVFGVLAAYALLYPSRRVVLLFPPIPMPAWVFALVYA 157
Query: 287 GKDMLRIIEG-NSNISGSAHLG---GAAVAALAWARIRRR 322
G ++L + G S I+ AHLG GA V L WAR RR
Sbjct: 158 GVELLLGVAGAASGIAHFAHLGGMFGALVLVLFWARPRRE 197
>gi|448613436|ref|ZP_21663316.1| rhomboid family protein/GlpG-like protein [Haloferax mucosum ATCC
BAA-1512]
gi|445740333|gb|ELZ91839.1| rhomboid family protein/GlpG-like protein [Haloferax mucosum ATCC
BAA-1512]
Length = 307
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHID--VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
FT+S N L + T +TS FSH HIV N I LYFFG + R +G L++
Sbjct: 121 FTLSSSNPL--FVWTWVTSVFSHDPGFFFHIVGNSIVLYFFGPPVERYIGSRNFAALFVV 178
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATLY 269
+ LA S ++ P S T LGASGAV AI+ + LNP +Y
Sbjct: 179 SGV------------LAGLSHIGSALILSPGSLTAVLGASGAVFAILGVLTVLNPSLRIY 226
Query: 270 FDFFIPVPAFLLG--------VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
F IP+P +L VF + D + G N++ AHL G + L R++
Sbjct: 227 LYFVIPIPLWLFTFGFAALSLVFFLSPDSAASV-GQGNVAHFAHLVGLVIGLLYGQRVKG 285
Query: 322 R 322
+
Sbjct: 286 K 286
>gi|254524738|ref|ZP_05136793.1| rhomboid family protein [Stenotrophomonas sp. SKA14]
gi|219722329|gb|EED40854.1| rhomboid family protein [Stenotrophomonas sp. SKA14]
Length = 208
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG + +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVELTGSYLT--YPAFYIGALLV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIVYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDKRGGDRINHSAHLAGAAFGVI 181
>gi|363581253|ref|ZP_09314063.1| Rhomboid family protein [Flavobacteriaceae bacterium HQM9]
Length = 223
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
+S F H D H++ NM LY F + LG L +Y+A GS F ++H
Sbjct: 56 SSGFLHADWGHLIFNMYTLYIFSPIVTSRLGNVNFLIIYVASLGLGSAFSYLFHK----- 110
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGK 288
+ A+GASGAV+ ++ I L P+ L+ F IP+PA++ G+ +
Sbjct: 111 ---------NEPHYSAIGASGAVSGVLYASILLYPQMDLFIMFIPIPIPAYVFGIGYLLY 161
Query: 289 DMLRIIEGNSNISGSAHLGGAA 310
+ + + NI AH GGAA
Sbjct: 162 SIYGMRNQHDNIGHDAHFGGAA 183
>gi|417780433|ref|ZP_12428195.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
gi|410779475|gb|EKR64091.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
Length = 197
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 HTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|408825148|ref|ZP_11210038.1| transmembrane rhomboid family protein [Pseudomonas geniculata N1]
Length = 208
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG + +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLT--YPAFYIGALLV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIVYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDKRGGDRINHSAHLAGAAFGVI 181
>gi|448579972|ref|ZP_21644801.1| hypothetical protein C455_17676 [Haloferax larsenii JCM 13917]
gi|445722645|gb|ELZ74302.1| hypothetical protein C455_17676 [Haloferax larsenii JCM 13917]
Length = 307
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
FT+S +N L + T +TS FSH V HIV N I LYFFG + R +G L++
Sbjct: 121 FTLSTENPL--FVWTWVTSVFSHSPVSFFHIVGNSIVLYFFGPPVERYIGSRKFTALFVI 178
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS-RTPALGASGAVNAIMLLDIFLNPKATLY 269
+ + ++ +V+ P T LGASGAV AI+ + LNP +Y
Sbjct: 179 AGMAAGLAHI------------GSSFVLTPGITTSVLGASGAVFAILGVLTVLNPGLRIY 226
Query: 270 FDFFIPVPAFLLGVFLIGKDMLRII----------EGNSNISGSAHLGGAAVAALAWARI 319
F IP+P +L F G L ++ G N++ AHL G + R+
Sbjct: 227 LYFVIPIPLWL---FTFGFAALSVVFFLDPGTAATAGQGNVAHFAHLVGLVIGLAYGQRV 283
Query: 320 RRR 322
+
Sbjct: 284 NGK 286
>gi|386719186|ref|YP_006185512.1| hypothetical protein SMD_2811 [Stenotrophomonas maltophilia D457]
gi|384078748|emb|CCH13341.1| hypothetical protein SMD_2811 [Stenotrophomonas maltophilia D457]
Length = 208
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T F H D H++ NMI L+FFG S+ L YL Y A IG + +
Sbjct: 45 LVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLT--YPAFYIGALLV-----S 97
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P + + FFIP PA + F
Sbjct: 98 ILPSYLKNQK----NPNYL-SLGASGAVSAVLFAFILIKPWSII-LVFFIPAPAIIYAAF 151
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G I+ SAHL GAA +
Sbjct: 152 YVGYSIWMDRRGGDRINHSAHLAGAAFGVI 181
>gi|433639240|ref|YP_007285000.1| putative membrane protein [Halovivax ruber XH-70]
gi|433291044|gb|AGB16867.1| putative membrane protein [Halovivax ruber XH-70]
Length = 311
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT--ISLDNFLSGRLHTLITSAFSHIDV 178
Y V Y +++ F++ +A N + +L F + T + S FSH D+
Sbjct: 84 YFRGNVTYTILLFMWVTFLVQLVAQSVLSFNQYISIFTLTTFHPEYVWTWVISIFSHNDI 143
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
HI N I ++FFG + R L L++ I +S G+ +
Sbjct: 144 AHIAFNSIAIFFFGPLLARYLSDRQYWALFLGAGI-----------LAGLSQVLVGLVLN 192
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
DP T LGASG AI+ + L+P +YF FFIP+P ++L
Sbjct: 193 DP--TLVLGASGGAMAILGVITILHPNLKVYFMFFIPMPLWIL 233
>gi|345006772|ref|YP_004809625.1| rhomboid family protein [halophilic archaeon DL31]
gi|344322398|gb|AEN07252.1| Rhomboid family protein [halophilic archaeon DL31]
Length = 294
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T TS F+H HI N IGLYFFG + R LG + L++ +GA+ G
Sbjct: 126 TWFTSVFAHGGFTHIAVNSIGLYFFGPPVERRLGSKRYAGLFLISGALAG---------- 175
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
LA GM + +GASGA+ AIM + LNP +Y FFIP+P ++L
Sbjct: 176 LAQIGISIGM---GATVGGVVGASGALLAIMGVLTVLNPGLRVYLYFFIPMPLWVL 228
>gi|389795854|ref|ZP_10198963.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
gi|388430185|gb|EIL87379.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
Length = 217
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTI---SLDNFL---SGRLHT-------LITSAFSHI 176
L+IAN VF+L ++ + + F + D+ + SG L + L++ AF H
Sbjct: 12 LLIANVVVFLLQQVFG-EMLLQYFALWPWGPDHVMQLSSGALASVGFRPWQLVSYAFMHG 70
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
V HI+ NMI LY FG I RT G + Y AI +V L+ + G +
Sbjct: 71 GVTHILFNMIALYMFGGVIERTFGARNFVIYYFVCAIVAAVAQLI-----VVQWFTHGFY 125
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIE 295
P LGASGAV ++L L P + F +P+PA+L F+IG ++ ++
Sbjct: 126 -------PTLGASGAVFGLLLAFGMLYPHEKVMLIFLPVPMPAWL---FVIGYALVELVM 175
Query: 296 G----NSNISGSAHLGG 308
G + ++ AHLGG
Sbjct: 176 GVTSTQAGVAHFAHLGG 192
>gi|149372609|ref|ZP_01891721.1| hypothetical protein SCB49_12094 [unidentified eubacterium SCB49]
gi|149354652|gb|EDM43216.1| hypothetical protein SCB49_12094 [unidentified eubacterium SCB49]
Length = 215
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ +S F H D H++ NM+ LYFF + LG + +Y+A + GS+ +H
Sbjct: 47 MFSSGFLHADFSHLLFNMLTLYFFAGVVINFLGTPKFVIIYIASLLLGSLLSFYFHK--- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
D A+GASGAV I+ I P LY F +P+PA+L GV +
Sbjct: 104 -----------DEYHYSAIGASGAVTGILYAAILFVPDQNLYLFFALPIPAWLFGVGYLL 152
Query: 288 KDMLRIIEGNSNISGSAHLGGA 309
+ + NI AH GGA
Sbjct: 153 YSIYGMKNRVGNIGHDAHFGGA 174
>gi|365875578|ref|ZP_09415106.1| hypothetical protein EAAG1_04857 [Elizabethkingia anophelis Ag1]
gi|442588843|ref|ZP_21007653.1| hypothetical protein D505_13495 [Elizabethkingia anophelis R26]
gi|365756837|gb|EHM98748.1| hypothetical protein EAAG1_04857 [Elizabethkingia anophelis Ag1]
gi|442561601|gb|ELR78826.1| hypothetical protein D505_13495 [Elizabethkingia anophelis R26]
Length = 221
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS F H D+ H++ NM+ L+FF + G + +Y I G++F L +
Sbjct: 47 LLTSGFLHADIMHLLFNMLTLFFFSGIVIDYFGKVGFVLIYFGAIIAGNLFSLFIY---- 102
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
K M+ A+GASG V+ I+ I +NP + F F IP+P ++ G
Sbjct: 103 ---KNNPMY-------SAIGASGGVSGILFAAIAMNPYLGIGFFFIPIPIPGYIFGALYF 152
Query: 287 GKDMLRIIEGN--SNISGSAHLGGAAVAALAWARI 319
G + ++ N+ +AHLGG +V L +A I
Sbjct: 153 GYSVYMMLNPKEWDNLGHAAHLGG-SVVGLVYAFI 186
>gi|359727457|ref|ZP_09266153.1| intramembrane protease [Leptospira weilii str. 2006001855]
Length = 197
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 HTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGSIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|167572865|ref|ZP_02365739.1| serine protease, rhomboid family protein [Burkholderia oklahomensis
C6786]
Length = 201
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T + H + H++ NM+GL FG + R+LG LY+A + G++ LV + A
Sbjct: 50 IVTYSALHAGLSHLIFNMLGLVMFGRDVERSLGRARFGTLYLASVVCGALTQLVVARYTA 109
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLI 286
P +GAS V ++ L P + F IP+PA++ +
Sbjct: 110 TGGA------------PTIGASAGVFGVLAAYALLYPSRRVVLLFPPIPMPAWVFALVYA 157
Query: 287 GKDMLRIIEG-NSNISGSAHLG---GAAVAALAWARIRRR 322
G ++L + G S I+ AHLG GA V L WAR RR
Sbjct: 158 GVELLLGVAGAASGIAHFAHLGGMFGALVLVLFWARPRRE 197
>gi|390450206|ref|ZP_10235800.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
gi|389662771|gb|EIM74325.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
Length = 255
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ H F+
Sbjct: 74 TYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLIFYLACAVAGAYV----HGFI 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
A S P +GASG++ I+ + L+P+ ++ F I +PAF+L
Sbjct: 130 APDSN-----------APLIGASGSIAGIVAAYLILHPRVKVWVLAFARIPIRIPAFILL 178
Query: 283 VFLIG-KDMLRIIEGNSNISGSAHLGGAAVAAL 314
IG + ++ +I+ + +S +AH GG A+
Sbjct: 179 ALWIGFQFLMLVIDTENQVSWAAHAGGILAGAV 211
>gi|344204466|ref|YP_004789609.1| peptidase S54, rhomboid domain-containing protein [Muricauda
ruestringensis DSM 13258]
gi|343956388|gb|AEM72187.1| Peptidase S54, rhomboid domain protein [Muricauda ruestringensis
DSM 13258]
Length = 216
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Query: 142 RIADPKFMANNFTISLDNF----------------LSGRLHTLITSAFSHIDVEHIVSNM 185
IA MA N +SL F +G+ ++TS F H+D+ H+ NM
Sbjct: 5 HIATIAIMAANVLVSLRGFNNMVFFDRYKFNISAIQAGQRERMVTSGFLHVDISHLFLNM 64
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
LYFF + G L +Y+ + GS+ L +H D A
Sbjct: 65 FTLYFFAPVVIGWFGSIKFLIIYLVSLLAGSLLALFFHK--------------DEPFYSA 110
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
+GASGAV I+ I LNP L F IP+PA++LG+ + + + NI +A
Sbjct: 111 VGASGAVMGILYAAILLNPDMQLGIMFIPIPLPAYVLGIAYLLYSIWGMKSRMGNIGHTA 170
Query: 305 HLGGA 309
H GGA
Sbjct: 171 HFGGA 175
>gi|322369242|ref|ZP_08043807.1| rhomboid family protein [Haladaptatus paucihalophilus DX253]
gi|320550974|gb|EFW92623.1| rhomboid family protein [Haladaptatus paucihalophilus DX253]
Length = 297
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 137 VFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMS 194
VF++ + D + + F + + GR+ T +TS F+H HI+ N I LYFFG
Sbjct: 98 VFVINVMGDAQLFSELFVLQSTHI--GRVWTWVTSIFAHNPTGFTHILFNGIALYFFGPV 155
Query: 195 IGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNA 254
+ R +G + L++ I A LA + G+ + S + LGASGA+ A
Sbjct: 156 LERRIGSKKFTALFLGSGI---------LAGLA----QVGIVAMMGSTSAVLGASGAIMA 202
Query: 255 IMLLDIFLNPKATLYFDFFIPVPAFL-LGVFLIGKDMLRII--EGNSNISGSAHLGGAAV 311
+M + LNP + F IP+P +L +F + +I G ++ AHL G +
Sbjct: 203 VMGVLTVLNPNMKILIYFIIPMPLWLATALFAVYSGFASVIGGAGAGGVAQLAHLTGLGI 262
Query: 312 AALAWARIRRRG 323
L A+++R G
Sbjct: 263 GLLYGAKLKREG 274
>gi|332293447|ref|YP_004432056.1| rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
gi|332171533|gb|AEE20788.1| Rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
Length = 210
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 22/153 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++SAF H + +H++ NM+ LYFF ++ T+G P++LL + +G + Y ++
Sbjct: 47 MVSSAFLHANTQHLLFNMLTLYFFANAVIYTIGVPKFLLVYLSSLLLGNILSYFLHK--- 103
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
D A+GASGAV ++ I LNP +YF +P ++ GV +
Sbjct: 104 ------------DEYHYSAVGASGAVMGVVYAGILLNPGLEIYF-----LPGWVFGVGYM 146
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
+ +++ N NI AH GG A+A A A I
Sbjct: 147 IYSIYGMVKRNDNIGHDAHFGG-AIAGYAIALI 178
>gi|294656917|ref|XP_459243.2| DEHA2D17380p [Debaryomyces hansenii CBS767]
gi|199431837|emb|CAG87416.2| DEHA2D17380p [Debaryomyces hansenii CBS767]
Length = 337
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 34/208 (16%)
Query: 127 VYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
VY LI N AVF++WR+ +F+ + DN S +++ +AFSH ++ H+ NM
Sbjct: 139 VYSLIAVNGAVFLMWRVPQFSRFLTRYGLLVKDNMYSS--WSMVGAAFSHQNLGHLFVNM 196
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L FG ++ +G +Y+ A+ S ++ L SS G +
Sbjct: 197 FVLQSFGTTLCAAIGVTNFAIMYLNSAVLSSFISILIPTIL-RSSLTVG----------S 245
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-- 303
LGASGA+ ++ ++ PKA L FFIPVP G +L + NI+GS
Sbjct: 246 LGASGAIFSVFGAFSYIFPKAPLAL-FFIPVPG--------GAWILFLGSLAYNIAGSAL 296
Query: 304 --------AHLGGA-AVAALAWARIRRR 322
AH+GG+ A A W ++R
Sbjct: 297 RWGKYDYAAHIGGSIAGIAYGWWYNKQR 324
>gi|300697598|ref|YP_003748259.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
gi|299074322|emb|CBJ53869.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
Length = 197
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + RTLG LY+A + + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGGVRTGVLYVASVLSAAFTQI---AVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLG-VFL 285
+S+ G P +GASG V ++L L P+ + F IP+PA+L V+
Sbjct: 105 LSTVPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLFPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +NI+ AHLGG A L W +RRR
Sbjct: 156 LIELTLGLSGRAANIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|110636882|ref|YP_677089.1| rhomboid-like protein [Cytophaga hutchinsonii ATCC 33406]
gi|110279563|gb|ABG57749.1| conserved hypothetical protein; possible rhomboid-like protein
[Cytophaga hutchinsonii ATCC 33406]
Length = 204
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
ITS F H + H+ NMI LYFFG + L GG++F L+Y L +
Sbjct: 48 ITSGFIHANFMHLAFNMISLYFFGYIVESKL--------------GGTLFILLYLLALVI 93
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
S + + S +LGASGAV+AI+ I P L F +FIPVPAF+ + +
Sbjct: 94 SDIPTYLKYKNNSNYASLGASGAVSAIIFASILFYP-VNLIFVYFIPVPAFMFAILYLAY 152
Query: 289 DMLRIIEGNSNISGSAHLGGAAV 311
++ SAH GA V
Sbjct: 153 SYYMDKRSGDAVNHSAHFYGAVV 175
>gi|343085188|ref|YP_004774483.1| rhomboid family protein [Cyclobacterium marinum DSM 745]
gi|342353722|gb|AEL26252.1| Rhomboid family protein [Cyclobacterium marinum DSM 745]
Length = 308
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G SE Y II+ F + A P+F+ +TI I+ F H HI
Sbjct: 44 GGSETTYRSIIS----FFMMPAAIPQFLMQPWTI-------------ISYMFLHEGFLHI 86
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+ NM+ LY+FG+ + LG L+ LY+ G I G + Y+V + S R VD +
Sbjct: 87 IFNMLFLYWFGLLVQEYLGSRKLVNLYILGGIAGGLLYMVLYNIAPYFSDR-----VDGA 141
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNIS 301
LGAS V AI++ L P + PV + +F + +N
Sbjct: 142 LM--LGASAGVYAIVVAAATLRPDTEFHLLLLGPVKIKYIAIFYVLVAFAN--SAGANAG 197
Query: 302 GS-AHLGGAAVA 312
G AHLGGAA+
Sbjct: 198 GELAHLGGAALG 209
>gi|290996388|ref|XP_002680764.1| predicted protein [Naegleria gruberi]
gi|284094386|gb|EFC48020.1| predicted protein [Naegleria gruberi]
Length = 446
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 118 LRQYGSSEVVYGLI---IANTAVFMLWRIADPK----FMANNFTISLDNFLSGRLHTLIT 170
++ Y + V++GL IA+ + ++ P+ F + T+SL+N R HTLIT
Sbjct: 155 IKDYYRAPVLWGLSAIHIASYTALVALQLKSPRRYARFFERHMTVSLNNLYEKRFHTLIT 214
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
S F+H + + ++++ + F G S+ L LL +Y AI G + +Y FL
Sbjct: 215 SIFAHKNALSLATSVLAINFVGCSLKEFLSDSTLLSIYFGSAILGVLAASMYGVFLVNYF 274
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPAFLLGVFLI 286
+R M V T G A++ + N + L+ ++F+P + L+ L+
Sbjct: 275 RRNMMMRVQLIHTGKFGFDATYYALLCALLGFNTEQFDLFEEYFVPSNSQLMNGILL 331
>gi|93005136|ref|YP_579573.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92392814|gb|ABE74089.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 230
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ +T F H D H++ NM LYFFG +I E L + ++ G G + + V
Sbjct: 66 NGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAI------EGLYQKFLFGY--GFLLFYV 117
Query: 222 YHAFLAM-----SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
+AM K+ ++ +LGASG V+A++ I L P +Y IP+
Sbjct: 118 LAIIVAMIPSYIKHKQSASYL-------SLGASGGVSAVLFAFILLAPWEKIYLFAIIPI 170
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
PA L V + + G SNI+ AH+ G A +A
Sbjct: 171 PAILFAVAYVAYSIYSDKRGGSNINHMAHMWGGAFGVIA 209
>gi|359683182|ref|ZP_09253183.1| intramembrane protease [Leptospira santarosai str. 2000030832]
gi|410450906|ref|ZP_11304933.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|418746239|ref|ZP_13302569.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|418752404|ref|ZP_13308670.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|422002893|ref|ZP_16350127.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409967293|gb|EKO35124.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|410015218|gb|EKO77323.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|410792786|gb|EKR90711.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|417258363|gb|EKT87751.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873624|gb|EMF88986.1| peptidase, S54 family [Leptospira santarosai str. ST188]
Length = 197
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|332665288|ref|YP_004448076.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332334102|gb|AEE51203.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 324
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 24/228 (10%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFML-------------WRIADPKFMA--NNFTI 155
R W R++ V +I+ N AVF+ W+ F + F +
Sbjct: 3 RSIWEDLKREFNYGNAVTRIILVNVAVFVGINLVNIGLYLFNGWKADSTAFKQFLDYFCM 62
Query: 156 SLD-NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
S D F+ +IT+ FSH HI+ NMI + G +G LG + +L +Y+ G I
Sbjct: 63 SSDWKFVLFHPWVIITNMFSHYSFSHILWNMIFYHMCGRIVGDLLGNKRVLPIYLMGGIA 122
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
G+ + + L G PS ALGAS AV A +++ + P +
Sbjct: 123 GAAMFFITENLLNGGPFSGG-----PS--TALGASAAVMATVVISGVIAPDYVIRLLLIG 175
Query: 275 PVPAFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRR 321
V + LI D+ I G+SN G AH+GG A + ++R+
Sbjct: 176 DVKLKYIVFTLIFLDLTFIAVGDSNSGGLFAHIGGDAFGFIYAWQLRK 223
>gi|344301141|gb|EGW31453.1| hypothetical protein SPAPADRAFT_62024 [Spathaspora passalidarum
NRRL Y-27907]
Length = 328
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+V+ ++ N VF++W++ + + I + L + T++ SAFSH HI+ NM
Sbjct: 130 LVWSIVALNAVVFLMWKVPSLQRYTMQYGIMFKDNLQS-VWTMLGSAFSHQSFGHILVNM 188
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L FG ++ LG LY+ A+ S L + S +
Sbjct: 189 FALQSFGTTLCAVLGVANFTILYLNSAVISSFAALAIPTLMRSSLS-----------FAS 237
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRIIEGNSNISGS 303
LGASGAV ++ +L PKA + FF P+P A++L + ++ ++ +
Sbjct: 238 LGASGAVFSVFAAFSYLIPKAPIAL-FFFPIPGGAWMLFLGTFAWNVAGVVLRWGVYDYA 296
Query: 304 AHLGGAAV--AALAWARIRRR 322
AH+GG+ V A W I+R+
Sbjct: 297 AHIGGSLVGLAYAYWYNIKRK 317
>gi|195172754|ref|XP_002027161.1| GL20022 [Drosophila persimilis]
gi|194112974|gb|EDW35017.1| GL20022 [Drosophila persimilis]
Length = 349
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYG-LIIANTAVFMLWRIADPKFMANNFTISL 157
R+ S++ + R + E V+ + + N VF LWR+ P+ A T
Sbjct: 117 RSLVERSSWSQLKLEIRQHWDNLNTGEKVFAPICLVNLLVFGLWRV--PRLRATMITYFT 174
Query: 158 DNFLSGRLHT--LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
N + R+ + S FSH HI +NM L+ F + +LG E L LYM+ +
Sbjct: 175 SN-PAARIVCWPMFLSTFSHYSAMHIFANMYVLHSFANAAATSLGKEQFLALYMSAGVFS 233
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
S+ ++Y A +++ GM +LGASGA+ ++ P L F+P
Sbjct: 234 SLISILYKA----GTRQVGM---------SLGASGAIMTVLAYVCAQYPDTQLSI-LFLP 279
Query: 276 VPAFLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F ++G D + G +AHLGGA
Sbjct: 280 ALTFSASAGIKVIMGIDFAGCVMGWKFFDHAAHLGGA 316
>gi|372220952|ref|ZP_09499373.1| hypothetical protein MzeaS_01470 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 216
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ + TS F H+D+ H+ NM LYFF + GP S F++V
Sbjct: 41 AGQKERMFTSGFLHVDIAHLFFNMFTLYFFADVVIAWFGP--------------SKFFIV 86
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFL 280
Y L S + + + A+GASGAV I+ I L P L F IP+PA++
Sbjct: 87 YVISLLAGSLLALYFHKNETYYSAVGASGAVTGILYAAILLQPNMQLGLLFIPIPLPAYI 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + + NI +AH GGA
Sbjct: 147 FGIAYLLYSIYGMKSRLGNIGHTAHFGGA 175
>gi|421111197|ref|ZP_15571676.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|410803379|gb|EKS09518.1| peptidase, S54 family [Leptospira santarosai str. JET]
Length = 197
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|212543197|ref|XP_002151753.1| rhomboid family protein, putative [Talaromyces marneffei ATCC
18224]
gi|210066660|gb|EEA20753.1| rhomboid family protein, putative [Talaromyces marneffei ATCC
18224]
Length = 567
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 112 YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITS 171
Y R W ++ + GL+ N V+MLW++ M N + IS+ L +++ S
Sbjct: 340 YYKRMWKDIPPAAATIMGLMATNVGVWMLWKLPPAWRMLNQYFISVP--LYPYAMSVVGS 397
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
FSH +H+++N + L+ G+ + +G L LY+A + GS+ L H L
Sbjct: 398 VFSHQQFKHLLTNTVILWLIGLRLHDEIGRGNFLSLYLASGVVGSLISLTSHVLL----- 452
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
Q + V +LGASGA+ ++ L+ L VP+FL
Sbjct: 453 -QRLTVT------SLGASGAIAGLVAAWCMLHSDDKL-------VPSFL 487
>gi|326434218|gb|EGD79788.1| hypothetical protein PTSG_10773 [Salpingoeca sp. ATCC 50818]
Length = 148
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++TS+FSH + H + NM + FGM + +G L+LY+A A+ ++ ++ Y+ L
Sbjct: 1 MVTSSFSHASMSHFLINMFVFFSFGMPVAAVMGQLPFLRLYLAAAVSTALAHIGYYTIL- 59
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ + DP ++GASG V A+M P+AT+ IPVPA+L I
Sbjct: 60 LPRLHPHANLTDPG---SIGASGCVMAVMTYFAARAPRATVLL-LIIPVPAWLAVSLFIT 115
Query: 288 KDM 290
D+
Sbjct: 116 ADL 118
>gi|71064855|ref|YP_263582.1| rhomboid family protein [Psychrobacter arcticus 273-4]
gi|71037840|gb|AAZ18148.1| possible Rhomboid family protein [Psychrobacter arcticus 273-4]
Length = 202
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ +T F H D H++ NM LYFFG +I E L + ++ G G + + V
Sbjct: 38 NGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAI------EGLYQKFLFGY--GFLLFYV 89
Query: 222 YHAFLAM-----SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
+AM K+ ++ +LGASG V+A++ I L P +Y IP+
Sbjct: 90 LAIIVAMIPSYIKHKQSASYL-------SLGASGGVSAVLFAFILLAPWEKIYLFAIIPI 142
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
PA L V + + G SNI+ AH+ G A +A
Sbjct: 143 PAILFAVAYVAYSIYSDKRGGSNINHMAHMWGGAFGVIA 181
>gi|448521119|ref|XP_003868430.1| Pcp1 protein [Candida orthopsilosis Co 90-125]
gi|380352770|emb|CCG25526.1| Pcp1 protein [Candida orthopsilosis]
Length = 354
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTLITSAFSHI 176
L+QY + +V+G+I N AVF++WR+ + + I DN S TL+ SAFSH
Sbjct: 148 LKQYPQA-LVWGIIAINGAVFLMWRVPQLQRFTMQYAILFKDNIQSP--WTLLWSAFSHQ 204
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
H NM+ F +S+ LG +Y+ A+ S L FL S
Sbjct: 205 SFAHFFINMLCFQSFAVSLVGILGVSNFTIMYLNAAVLSSFASLAIPMFLGSSLA----- 259
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLR 292
+LGASGA+ + +L P + + FFIPVP LG L
Sbjct: 260 ------VASLGASGAIFGVFGCFSYLFPASPVGI-FFIPVPGGAWVLFLGTMLWNAAGCV 312
Query: 293 IIEGNSNISGSAHLGGAAVA 312
+ G + +AHLGG+ V
Sbjct: 313 LRWGTFDY--AAHLGGSLVG 330
>gi|448589956|ref|ZP_21650015.1| hypothetical protein C453_05784 [Haloferax elongans ATCC BAA-1513]
gi|445735071|gb|ELZ86624.1| hypothetical protein C453_05784 [Haloferax elongans ATCC BAA-1513]
Length = 307
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
FT+S +N L + T +TS FSH + HIV N I LYFFG + R +G L++
Sbjct: 121 FTLSTENPL--FVWTWVTSVFSHSPISFFHIVGNSIVLYFFGPPVERYIGSRKFTALFVI 178
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS-RTPALGASGAVNAIMLLDIFLNPKATLY 269
+ + ++ +V+ P T LGASGAV AI+ + LNP +Y
Sbjct: 179 AGMAAGLAHI------------GSSFVLTPGVTTSVLGASGAVFAILGVLTVLNPGLRIY 226
Query: 270 FDFFIPVPAFLLGVFLIGKDMLRII----------EGNSNISGSAHLGGAAVAALAWARI 319
F IP+P +L F G L ++ G N++ AHL G + R+
Sbjct: 227 LYFVIPIPLWL---FTFGFAALSVVFFLSPNSAASVGQGNVAHFAHLVGLVIGLAYGQRV 283
Query: 320 RRR 322
+
Sbjct: 284 NGK 286
>gi|332662640|ref|YP_004445428.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332331454|gb|AEE48555.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 207
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T H DV H++ N+I LY FG +G E+ + Y +G ++ L Y + + +
Sbjct: 48 LTHGMVHADVNHLLFNLITLYSFG------IGVEFYFQQYFGQQVGIILYLLFYFSGIIL 101
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
SS D A+GASG V AI+ IF+NP + F VPA L GV I
Sbjct: 102 SSLPDYYRHQDNPGYRAVGASGGVAAIVFGYIFMNPWDRV----FWVVPAGLYGVLYIIY 157
Query: 289 DMLRIIEGNSNISGSAHLGGA 309
+ N NI +AHL G+
Sbjct: 158 SIYMDRNSNDNIGHNAHLWGS 178
>gi|344313259|gb|AEN04489.1| putative rhomboid-7, partial [Plutella xylostella]
Length = 208
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+V Y + N VF WR+ + + + S + S + ++ S FSH H+ +N
Sbjct: 1 KVFYPIFALNCLVFAAWRVRSLQPVMVKYFCS-NPASSAKCLPMVLSTFSHYSPLHLAAN 59
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M LY F + TLG E + +Y++ + S +Y + SK+ G+
Sbjct: 60 MYVLYSFMPAAVATLGKEQFVSMYLSAGVASSFASFLYK----VVSKQPGL--------- 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNIS 301
+LGASGA+ A++ P L F+P+ F G ++G D+ ++ G
Sbjct: 107 SLGASGAIMAVLSYVCVQYPDTKLSI-IFLPMYTFAAGSAIKVIMGVDLAGVLFGWKFFD 165
Query: 302 GSAHLGGAA 310
+AHLGGAA
Sbjct: 166 HAAHLGGAA 174
>gi|330816995|ref|YP_004360700.1| rhomboid family protein [Burkholderia gladioli BSR3]
gi|327369388|gb|AEA60744.1| rhomboid family protein [Burkholderia gladioli BSR3]
Length = 190
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
+ LI+AN AVF++ + P + + F + + R+ L++ + H V H+ NM+G
Sbjct: 3 FALILANVAVFLVELLVGPSLV-DRFALWPATSEAFRVWQLLSYSLLHAGVVHLTYNMMG 61
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
L FG + R LG L LY+ + G LA + Q + TP +G
Sbjct: 62 LALFGRDLERLLGSARFLVLYVCSVLAGG---------LAQLAVEQA---TSTAATPTVG 109
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDF---FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
AS V ++ PK + F +PV F+ G L+ ++L + G++ ++ A
Sbjct: 110 ASAGVFGVLAAYAVRLPKRRVILLFPPIAMPVWLFVTGYALV--ELLSGVSGDAGVAHFA 167
Query: 305 HLGG--AAVAALA-WARIRRRG 323
HLGG A+A L W R G
Sbjct: 168 HLGGMLGAIACLMLWRPARASG 189
>gi|338211723|ref|YP_004655776.1| rhomboid family protein [Runella slithyformis DSM 19594]
gi|336305542|gb|AEI48644.1| Rhomboid family protein [Runella slithyformis DSM 19594]
Length = 208
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 67/158 (42%), Gaps = 25/158 (15%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFG----MSIGRTLGPE---YLLKLYMAGAIGGSVF 218
+ ITS F H D H++ NM LYFFG M +G GP Y L LY+ G + +
Sbjct: 44 YRFITSGFIHADFGHLIFNMFSLYFFGEAMEMFLGGIFGPTGTFYYLALYLLGIVVSDIP 103
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP--KATLYFDFFIPV 276
+ H S +LGASG V+A++ I L P K LYF I +
Sbjct: 104 TFLKHR--------------KSSSYNSLGASGGVSALLFAFILLAPLQKVCLYFA--ICI 147
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
P FL G + + I+ AHL GA L
Sbjct: 148 PGFLFGALYMFYSFYESRKMGGRINHDAHLYGAIFGIL 185
>gi|421898671|ref|ZP_16329037.1| uncharacterized membrane protein [Ralstonia solanacearum MolK2]
gi|206589877|emb|CAQ36838.1| uncharacterized membrane protein [Ralstonia solanacearum MolK2]
Length = 197
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + RTLG LY+A + + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQI---AVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLG-VFL 285
+S+ G P +GASG V ++L L P+ + F IP+PA+L V+
Sbjct: 105 LSTVPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLFPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +I+ AHLGG A L W +RRR
Sbjct: 156 LIELTLGLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|282879046|ref|ZP_06287806.1| peptidase, S54 (rhomboid) family protein [Prevotella buccalis ATCC
35310]
gi|281298780|gb|EFA91189.1| peptidase, S54 (rhomboid) family protein [Prevotella buccalis ATCC
35310]
Length = 304
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----- 218
R++ L+T F H EHI NM L+ FG + R GP+ L Y++ IG +F
Sbjct: 46 RIYQLVTYMFMHASFEHIFFNMFALWMFGCVVERVWGPKKFLFYYISCGIGAGLFQELAQ 105
Query: 219 ---YLVYHAFLAMSSKRQGMWVVDP---SRTPALGASGAVNAIMLLDIFLNPKATLY-FD 271
Y+V S GM + ++ +GASGAV A++L + P+ ++ F
Sbjct: 106 YGSYMVEGLAAYDSVSFDGMRIAMGDFLNKWTTVGASGAVYALLLAFGMIFPEERIFIFP 165
Query: 272 FFIPVPAFLLGVFLIGKDM-LRIIEGNSNISGSAHLGG 308
IP+ A +F G + + + N++ AHLGG
Sbjct: 166 LPIPIKAKWFVIFYAGLSLVMALTTTGGNVAHFAHLGG 203
>gi|110636443|ref|YP_676650.1| hypothetical protein CHU_0016 [Cytophaga hutchinsonii ATCC 33406]
gi|110279124|gb|ABG57310.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 290
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 167 TLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
TLIT AFSH HI NM+GLY+FG I +G L+ LY GA+ G YL+ +
Sbjct: 66 TLITYAFSHDTPNPFHIFFNMLGLYWFGGLIREYVGGRRLISLYFIGALVGVALYLICYN 125
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
++ +R P +GAS +V A ++ L P + F PV + F
Sbjct: 126 YIPFYMER-----AQPRFL--IGASASVLAAVVGAATLLPNYRFHLIFIGPVKIVYIAAF 178
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGA 309
+ ++ ++GN+ AHLGGA
Sbjct: 179 YVLISIIGSVQGNAG-GNIAHLGGA 202
>gi|420243190|ref|ZP_14747144.1| putative membrane protein [Rhizobium sp. CF080]
gi|398063277|gb|EJL55023.1| putative membrane protein [Rhizobium sp. CF080]
Length = 248
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H+D H+ SNM+ L+ FG ++ LG L Y+ + H F+
Sbjct: 74 TFVTYAFLHMDFWHLASNMLFLWVFGDNVEDALGHVKFLAFYLL----CAAAGAALHGFV 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPVPAFL-L 281
A +S+ P +GASGA++ ++ L+P+ ++ F +P+PAF+ L
Sbjct: 130 ASNSE-----------GPLIGASGAISGVVAAYFLLHPRVRVWVLVLFRIPLPLPAFIPL 178
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
++++ + + ++ + +S AH+GG A+ +RR+G
Sbjct: 179 ALWIVQQFAMLALDLDGMVSWGAHVGGIIAGAILVLFMRRKG 220
>gi|372208678|ref|ZP_09496480.1| peptidase S54, rhomboid domain-containing protein
[Flavobacteriaceae bacterium S85]
Length = 238
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-- 221
R+ LIT F H + H+ NMIGLYF G + + G L Y++ IG S+ +L+
Sbjct: 45 RIWQLITGIFMHGSISHLFFNMIGLYFLGTPMLQLWGKNRFLFFYLSAGIGASLIFLLER 104
Query: 222 -------YHAFLAMSSKRQGMW------------VVDPSR----TPALGASGAVNAIMLL 258
LAM + ++ ++ +++ + T LGASGA+ ++
Sbjct: 105 QLEFQNAMSELLAMGATKEELYGLFSDTKSFQNPIMETANRIYGTRLLGASGAIFGLLAA 164
Query: 259 DIFLNPKATLYFDFFIP------VPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
+ P A +Y FFIP VP +L + G + I+ N++ AH+ GA +
Sbjct: 165 FGWYFPNAKIYLYFFIPITVKYFVPVVVLADLISGLTGVPILS-PVNVAYFAHVAGAVIG 223
Query: 313 ---ALAWARIRRR 322
A W + + R
Sbjct: 224 LIIAYVWKKNQHR 236
>gi|115402097|ref|XP_001217125.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188971|gb|EAU30671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 562
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 29/215 (13%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ + +I N +F LWR+ P + + N + I++ + R +L+ + F
Sbjct: 341 RLWPSVPPAAATIMTIIGMNVGIFALWRLWPPAWRLLNRYFITVTAY--PRPLSLVGNVF 398
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH V H+ +NM L+ G + +G L LY+A + GS L+YH R
Sbjct: 399 SHQTVRHLAANMFVLWVVGTKVHDEIGRGNFLALYLASGVFGSFTSLLYHIV------RG 452
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP----------AFLLGV 283
+ V LGASGA++ ++ L+ FF+P AFL G+
Sbjct: 453 NLMVT------GLGASGAISGLVAALCLLHADERFTI-FFLPAEWQEVFSAKGSAFLTGI 505
Query: 284 FLIGK-DMLRIIEGNSNISGSAHLGGAAVAALAWA 317
+ ML ++ + AHLGG +A WA
Sbjct: 506 VAVEILSMLSPVKA-VRMDHVAHLGG-YLAGSVWA 538
>gi|407785434|ref|ZP_11132582.1| hypothetical protein B30_05302 [Celeribacter baekdonensis B30]
gi|407203466|gb|EKE73453.1| hypothetical protein B30_05302 [Celeribacter baekdonensis B30]
Length = 259
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 34/218 (15%)
Query: 126 VVYGLIIANTAVFM--LWRIADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVE 179
V Y LI N AVFM L D + + ++ + + +T++TS F H V
Sbjct: 28 VTYALIALNAAVFMAMLPSYGDDRALLGLYSTWAMVPARISMGDGYYTMLTSMFMHGSVL 87
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
HI NM+ L+ FG ++ + G + YL ++ F +++
Sbjct: 88 HIAGNMLFLWIFGDNLEDEM---------------GHLRYLGFYLFCGLAAGLAQYMAAP 132
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKAT----LYFDFF---IPVPAFL-LGVFLIGKDML 291
+R P +GASGA+ ++ + L PKA L+F F IP+PA+L LG++ + +
Sbjct: 133 DARVPMVGASGAIAGVLGGYMLLFPKARVDVFLFFIIFFKVIPLPAWLMLGLWFAFQIVG 192
Query: 292 RI-IEGNSNISGSAHLGGAAVAALA----WARIRRRGF 324
+ GN ++ AH+GG LA W R+ R F
Sbjct: 193 EVGASGNGGVAYLAHIGGFIAGILATYPLWRRLGGRAF 230
>gi|328949134|ref|YP_004366471.1| peptidase S54, rhomboid domain-containing protein [Treponema
succinifaciens DSM 2489]
gi|328449458|gb|AEB15174.1| Peptidase S54, rhomboid domain protein [Treponema succinifaciens
DSM 2489]
Length = 207
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+T F H HI+ NM+ L+FFG+S+ R +G E+LL ++ G + G + ++Y
Sbjct: 56 LTYLFVHSGWSHILFNMLALFFFGISVERAVGSKEFLLFYFLCGILDGIISTVLY----- 110
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ G+ V+ +GASGAV A++ + P+ +Y IPV A LL
Sbjct: 111 ---RLLGITVL------LVGASGAVYALLFAYAVIFPRNVIYIWGIIPVAAPLLVFVYAL 161
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVA 312
++ I G S I+ AHL G AVA
Sbjct: 162 IEITSQISGGSGIAHLAHLAGFAVA 186
>gi|380016976|ref|XP_003692443.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Apis florea]
Length = 338
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+R++ +W R E ++ + N VF+ W I P F + N S R +
Sbjct: 116 WRHKMETWWRNLSEGERIFVPICFLNVLVFLSWHI--PAFRPTMYRYFCSNPTSNRCWPM 173
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+ FSH + H++ NM LY F LG E L LY+ + S +Y A + +
Sbjct: 174 LFVTFSHYSLLHLIINMYVLYDFCKIAVTELGREQFLALYLTSGVVSSFSSYLYKATVGI 233
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--- 285
+ P+LGASGA+ ++ P L F+P+ F +
Sbjct: 234 -------------KDPSLGASGAIMGVLGFVCTQFPNVYLSI-VFLPMLKFTASSAIKAV 279
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+G D + + + +AHLGGA
Sbjct: 280 MGLDTVGCLMRWQRLDHAAHLGGA 303
>gi|354603563|ref|ZP_09021561.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
gi|353348943|gb|EHB93210.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
Length = 204
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE-----------YLLKLYMAGAIGGS 216
+IT F H D H+ NM L FG I R G + L LY G + S
Sbjct: 42 VITHGFVHGDYVHLAVNMFVLLSFGQFIERFFGAYQQIGLVSNGDLWYLLLYFGGMVAAS 101
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
V+ L+ + + R ++GASGAV+A++ IF NP + +Y IP+
Sbjct: 102 VYDLIRYR--------------NNPRYASIGASGAVSAVVFASIFFNPWSKIYLLGVIPI 147
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
P + G+ IG I+ AHL GA
Sbjct: 148 PGIIFGLLYIGYSSYMGRHQGDRINHFAHLFGA 180
>gi|416242727|ref|ZP_11633696.1| rhomboid family protein [Moraxella catarrhalis BC7]
gi|326570623|gb|EGE20659.1| rhomboid family protein [Moraxella catarrhalis BC7]
Length = 201
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G+ L+T F H + H++ NM LYFFG I R Y+ K G +G + ++
Sbjct: 37 KGQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERF----YIDKFGNLGFVGFYILAII 92
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L ++ + + + +LGASGAV+A++ I P TLY +P+PA +
Sbjct: 93 I-AMLPTYARNK-----NNTYYSSLGASGAVSAVLFAYILFAPWNTLYLFAVLPIPAIVF 146
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + NI+ SAHL GA +A
Sbjct: 147 AIAYVAYSIWADRRDGGNINHSAHLFGAVFGVVA 180
>gi|118591392|ref|ZP_01548790.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
gi|118436064|gb|EAV42707.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
Length = 230
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++T +F H H++ NM+ L+ FG ++ +G L Y+ AI G + Y A L
Sbjct: 75 SVVTYSFLHGSFMHLIGNMLFLWVFGDNVEDAVGHLRYLLFYLLCAIAGGLAY----ASL 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP-----AFLL 281
++S P +GASGAV+ ++ + L+P+ ++ +P +LL
Sbjct: 131 DVNSD-----------VPLIGASGAVSGVVAAYLMLHPRVKVWVLALGRIPLRLSAVWLL 179
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
G +++ + + +I +S+I+ AH+GG AL RRRG
Sbjct: 180 GGWIVYQIVNAVIASDSDIAWIAHIGGMVAGALLIVFFRRRG 221
>gi|390945303|ref|YP_006409064.1| hypothetical protein Belba_3827 [Belliella baltica DSM 15883]
gi|390418731|gb|AFL86309.1| putative membrane protein [Belliella baltica DSM 15883]
Length = 210
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV-FYLVYHAFLA 227
+ S F H D H++ NM YFFG ++ + L LY G I G+V F L Y A +
Sbjct: 48 VLSGFIHKDSMHLLFNMFTFYFFGGAVEQFL-------LYRLGFIPGTVVFVLFYVAAIV 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
++ + + S ALGASG V A + I L P + + I +P F LG+ +
Sbjct: 101 IADVPTFLKHQNHSFYRALGASGGVAATVFASIILMPLSDICLFGIICLPGFALGILFLI 160
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVA 312
+++ +GN ++ AHL GA +
Sbjct: 161 YSVVQAKKGNDGVNHDAHLYGALIG 185
>gi|440750148|ref|ZP_20929392.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436481189|gb|ELP37370.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 307
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T F H + HI+ NM+ LY+FGM + LG L +Y+ G I G + YL
Sbjct: 72 TVMTYMFFHEGIFHILFNMLFLYWFGMLLHEYLGSRKLANIYILGGIAGGLLYLT----- 126
Query: 227 AMSSKRQGMWVVDP------SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
M+ + P LGAS V AI++ L+P T + PV
Sbjct: 127 --------MYNISPFFAEVLPIAKMLGASAGVYAIVVAAATLSPNTTFFLLLLGPVKIKY 178
Query: 281 LGVFLIGKDMLRIIEGNSNISGS--AHLGGAAVAALAWARIRR 321
+ +F + + N +G AHLGGAA+ L ++R+
Sbjct: 179 IAIFYV---FIAFANSAGNNAGGELAHLGGAALGYLYVIQLRK 218
>gi|433773014|ref|YP_007303481.1| putative membrane protein [Mesorhizobium australicum WSM2073]
gi|433665029|gb|AGB44105.1| putative membrane protein [Mesorhizobium australicum WSM2073]
Length = 266
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI+AN ++ + F N + F+ +H
Sbjct: 11 LRHIRLQYVTIGLIVANAVIYCATALGGENF--TNAAVLGLGFIPSVVHDTAELDPRFVI 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AI G+ F
Sbjct: 69 IPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAF--- 125
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VP 277
QG+ D S+ P +GASGA+ +++ + L P+ ++ F IP +P
Sbjct: 126 -----------QGLVAWD-SQAPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIP 173
Query: 278 AFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
AF+ L ++++ + ++ G IS + H+GG A+ +R RG
Sbjct: 174 AFIPLILWVLFQIVMFAAGGEDQISWACHIGGIIAGAVLVLVLRSRG 220
>gi|260063472|ref|YP_003196552.1| transmembrane rhomboid family protein [Robiginitalea biformata
HTCC2501]
gi|88782916|gb|EAR14090.1| putative transmembrane rhomboid family protein [Robiginitalea
biformata HTCC2501]
Length = 291
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS---------GRLHTLIT 170
Q+ + LI+ N AVF+++ +A F+ N SL+ + + +L+T
Sbjct: 9 QFARLSIAEKLIVINLAVFIVFGLAG--FLLNLPGRSLEQWFELPKDFFDFLVQPWSLVT 66
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
+F H + HI NM+ LY+ G GP + +Y G I G F+L +
Sbjct: 67 YSFLHGGLFHIFFNMLMLYYVGRIFLNFYGPRRFINVYFLGVILGGAFFLAAYNIFP--- 123
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
V S++P +GAS V A+++ P+ + FF + + +G F + D+
Sbjct: 124 ------VFYQSQSPLIGASAGVMAVLIFVCTYLPQQEVRL-FFFNLKLWYIGAFFVLLDL 176
Query: 291 LRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ I G++ AHLGGA + L +AR +G
Sbjct: 177 VLIPTGDNPGGRIAHLGGALLGYL-YARRSAQG 208
>gi|420150706|ref|ZP_14657863.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 335 str.
F0486]
gi|394751798|gb|EJF35543.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 335 str.
F0486]
Length = 208
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFKNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I ++G L +Y + GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|256820663|ref|YP_003141942.1| rhomboid family protein [Capnocytophaga ochracea DSM 7271]
gi|256582246|gb|ACU93381.1| Rhomboid family protein [Capnocytophaga ochracea DSM 7271]
Length = 208
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFKNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I ++G L +Y + GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|410096061|ref|ZP_11291051.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
gi|409227132|gb|EKN20033.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
Length = 197
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL-------LKLYMAGAIGGSVFYL 220
LIT F H D+ H++ NM + FG I + G YL L LY G I S++ L
Sbjct: 43 LITHGFVHADMTHLLVNMFTFWSFGTYIEKVFG--YLGFGTWGFLGLYFGGMIFASIYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
V H DP ++GASGAV+AI+ I +P + + IPVP +
Sbjct: 101 VKHH-------------NDPYYV-SIGASGAVSAILFSYILFDPWSKILLFAIIPVPGII 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
GV + NI+ +AH GA L
Sbjct: 147 FGVVYLAYCQYMAKRAGDNINHNAHFYGAVYGFL 180
>gi|270007066|gb|EFA03514.1| hypothetical protein TcasGA2_TC013516 [Tribolium castaneum]
Length = 337
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 21/221 (9%)
Query: 101 QFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDN 159
+F RS R W +V + + N VF WRI + FM F + +
Sbjct: 108 EFHSRSHTLLRQIEEKWKLLTPGEKVFVPICLINVLVFGAWRIPRLQPFMLKYFCSNPGS 167
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
+I S FSH H+++NM L+ F +LG E L LY+ + S
Sbjct: 168 --KSVCWPMILSTFSHYSGFHLLANMYVLHSFSTGAVHSLGKEQFLGLYLGAGVISSFTS 225
Query: 220 LVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
VY +K+ G+ +LGASGA+ AI+ P+ L +P+ F
Sbjct: 226 YVYKVI----TKQPGL---------SLGASGAIMAILGYVCTQYPETKLGI-ILLPIFTF 271
Query: 280 LLGV---FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317
G ++G D ++ G +AHLGGAA + WA
Sbjct: 272 SAGAAIKVIVGIDTAGVLMGWKFFDHAAHLGGAA-CGIMWA 311
>gi|431796163|ref|YP_007223067.1| hypothetical protein Echvi_0782 [Echinicola vietnamensis DSM 17526]
gi|430786928|gb|AGA77057.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 306
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++ T F H + HI+ NM+ LY+FG+ + LG L LY+ G + G+V Y++
Sbjct: 72 SIFTYMFMHEGIFHILFNMLFLYWFGLLVQEYLGSRKLANLYILGGLAGAVLYVI----- 126
Query: 227 AMSSKRQGMWVVDP----SRTPA--LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
M+ V P R A LGAS V AI++ L P T + PV
Sbjct: 127 --------MYNVAPYFIEQRDAALMLGASAGVYAIVVGAATLTPDTTFHLLLLGPVKIKY 178
Query: 281 LGVFLIGKDMLRIIEGNS---NISGS-AHLGGAAVAALAWARIRR 321
+ +F + I NS N G AHLGGAA+ L +R+
Sbjct: 179 IAIFYV-----VIAFANSTGANAGGELAHLGGAAIGYLYITMLRK 218
>gi|418718375|ref|ZP_13277909.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|421092732|ref|ZP_15553464.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410364583|gb|EKP15604.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410744855|gb|EKQ93590.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|456889841|gb|EMG00711.1| peptidase, S54 family [Leptospira borgpetersenii str. 200701203]
Length = 197
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|284040579|ref|YP_003390509.1| rhomboid family protein [Spirosoma linguale DSM 74]
gi|283819872|gb|ADB41710.1| Rhomboid family protein [Spirosoma linguale DSM 74]
Length = 207
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-------GPEYLLKLYMAGAIGG 215
G+ + LITS F H D H+ NM+ LYFFG I + G YL+ Y+ +
Sbjct: 39 GQYYRLITSGFLHADWGHLFFNMLSLYFFGGFIEQVFTMLFEGSGGPYLIGFYLVAILVS 98
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
+ +FL + DP +LGASG V+A++ I P +Y +FIP
Sbjct: 99 DI-----PSFLKHRN--------DPGYN-SLGASGGVSAVIFAAILFRPLTPIYL-YFIP 143
Query: 276 --VPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
+P F+ G + G N++ AH GA
Sbjct: 144 IGIPGFIFGALYLAYSYYESRRGAGNVNHDAHFYGA 179
>gi|337266147|ref|YP_004610202.1| Rhomboid family protein [Mesorhizobium opportunistum WSM2075]
gi|336026457|gb|AEH86108.1| Rhomboid family protein [Mesorhizobium opportunistum WSM2075]
Length = 266
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI+AN V+ + F N + F+ +H
Sbjct: 11 LRHIRLQYVTIGLIVANALVYCATALGGENF--TNAAVLGLGFIPSVVHNTAELDPRFIV 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AI G+ F
Sbjct: 69 IPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAF--- 125
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VP 277
QG+ D S+ P +GASGA+ +++ + L P+ ++ F IP +P
Sbjct: 126 -----------QGLVAWD-SQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIP 173
Query: 278 AFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
AF+ L ++++ + ++ G +S + H+GG A+ +R RG
Sbjct: 174 AFIPLVLWVLFQIVMFAAGGEDQVSWACHIGGIIAGAVLVLVLRSRG 220
>gi|385805283|ref|YP_005841681.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
gi|383795146|gb|AFH42229.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
Length = 241
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 25/164 (15%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVY 222
RL T+ T+ F H D+ H++ NM+ LY FG SI LG +YLL +++G G ++FY+
Sbjct: 64 RLWTIFTAMFIHTDIVHVLGNMLFLYIFGDSIEIALGKVKYLLFYFLSGT-GAALFYVTS 122
Query: 223 HAFL------AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFF 273
+ ++ S+ W++ PA+GASGA++ ++ I L P + TL F+
Sbjct: 123 ITLVHVPETSSIISQMNNPWLI-----PAVGASGAISGVLGAYIMLYPSSMVKTLTLWFW 177
Query: 274 IPV----PAFL-LGVFLIGKDMLRIIEGNS----NISGSAHLGG 308
PV PA + + ++ I + +L ++ S I+ AH+GG
Sbjct: 178 APVVINFPAIIFIVIWFIYQLVLAVLTTFSAVYTGIAFWAHVGG 221
>gi|212550736|ref|YP_002309053.1| hypothetical protein CFPG_379 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548974|dbj|BAG83642.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 198
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--LHTLITSAFSHIDVEHIV 182
+V L+I N +V+ IA F + L +F S R L+ LIT F+H +H+
Sbjct: 10 QVTRNLLIINVSVW----IACHYFGGLADVLGLHHFQSKRFSLYQLITYMFTHETFQHLF 65
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG-GSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM L+ FG ++ + L Y+ IG G V LV++ + P
Sbjct: 66 FNMFALFMFGGAVEMVWKQKRFLTYYIVTGIGAGLVQVLVFYI------------KISPQ 113
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS--- 298
+GASGA+ ++L L P+ LY FIP+P F++G +L G S
Sbjct: 114 EAVMIGASGAIFGLLLAFGILFPETLLYI-MFIPIPV-KAKYFVVGYGLLEFFYGMSRNV 171
Query: 299 --NISGSAHLGG 308
N++ AHLGG
Sbjct: 172 SDNVAHFAHLGG 183
>gi|344201593|ref|YP_004786736.1| peptidase S54, rhomboid domain-containing protein [Muricauda
ruestringensis DSM 13258]
gi|343953515|gb|AEM69314.1| Peptidase S54, rhomboid domain protein [Muricauda ruestringensis
DSM 13258]
Length = 286
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
+L+T +F H HI NMI LYF + + +Y G I GG VF L Y+ F
Sbjct: 60 SLVTYSFFHAGFGHIFWNMIILYFASRIFLNLFDAQRFINVYFLGLILGGLVFLLSYNVF 119
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ + S T +GAS VNA+++ P + FF + + +GV L
Sbjct: 120 PTLVN----------SNTALIGASAGVNAVLIFVCAYIPNQEVRVIFF-NIKLWYIGVAL 168
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ KD++ I G++ G AHLGGA
Sbjct: 169 VVKDLVLIGMGDNIGGGMAHLGGA 192
>gi|182415306|ref|YP_001820372.1| rhomboid family protein [Opitutus terrae PB90-1]
gi|177842520|gb|ACB76772.1| Rhomboid family protein [Opitutus terrae PB90-1]
Length = 297
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 124 SEVVYGLIIANTAVF----MLWRIADPKFMANNFT-ISLDNFLSGRLHTLITSAFSHIDV 178
+ V+ LI A A+F +LWR+ + + + +S+ N +GR+ TL+T +F H
Sbjct: 17 TTVLTWLISAIVAMFVLQHLLWRLFNADTLLDQLLGLSVANLKAGRIWTLVTYSFLHSKA 76
Query: 179 E--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
HI++N++GLYF G + LG L LY A G +L H W
Sbjct: 77 NFLHIIANLLGLYFVGRVLLPVLGSRRFLGLYAAAVGLGGALWLGTH------------W 124
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP---------AFLLGVFLIG 287
+GAS V + +L LNP + F F VP A LL L+G
Sbjct: 125 SAGTGTL--IGASAGVLGLFMLFACLNPNQPMTFLLFFIVPVTLRPKYVAAGLLAFELLG 182
Query: 288 KDMLRIIEG----NSNISGSAHLGG 308
++ + ++ SAHLGG
Sbjct: 183 FGFYEVMGAVSPFGAPLAHSAHLGG 207
>gi|167527528|ref|XP_001748096.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773514|gb|EDQ87153.1| predicted protein [Monosiga brevicollis MX1]
Length = 395
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 134 NTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
N VF+LWR+ + +F+ NF + LSGRL ++ + SH D H + NMI F
Sbjct: 202 NAVVFLLWRLPNMQRFLLRNF---MHAPLSGRLTQMVGANISHKDAIHFLFNMIAFQSFA 258
Query: 193 MSI--GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASG 250
+ + G+ G E+L L AG +G SV +V HAF+A LGASG
Sbjct: 259 VCVKNGQLTGGEFLALLGWAG-LGSSVASMV-HAFVA------------ARHFAGLGASG 304
Query: 251 AVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGSAHLG 307
V + ++P+A L F+P F +I D+ ++ G S + +AHLG
Sbjct: 305 IVFGLFGFVTAVDPEAKLSI-IFLPFFTFSAEQAMIAVMMFDVAGLVLGWSRLGHAAHLG 363
Query: 308 G 308
G
Sbjct: 364 G 364
>gi|390955218|ref|YP_006418976.1| hypothetical protein Aeqsu_2504 [Aequorivita sublithincola DSM
14238]
gi|390421204|gb|AFL81961.1| putative membrane protein [Aequorivita sublithincola DSM 14238]
Length = 291
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 17/197 (8%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA------DPKFMANNFTISLD-NFLSGRLHTLITSA 172
+Y ++ V+ LII N A F++ R+ P + F +S D + L R TLIT
Sbjct: 9 KYKTASVLVKLIILNAAAFLVVRLGAFFLSITPFNFSRWFVLSDDFDTLLFRPWTLITYG 68
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
F H D HI+ NM+ LY+FG + + LL +Y+ GA+ G + +++ + + ++
Sbjct: 69 FLHYDFFHILFNMLWLYWFGQFVLNLFNGKRLLTVYLLGALFGGLLFVLAYNLFPVFAES 128
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLR 292
+G +GASGAV AIM+ P + F + + + VFL D++R
Sbjct: 129 KGY---------LIGASGAVTAIMIFIATYTPNTEVRI-FTFTIKLWHIAVFLFLLDLIR 178
Query: 293 IIEGNSNISGSAHLGGA 309
I + AH+GG
Sbjct: 179 IPTSGNAGGLMAHVGGG 195
>gi|385805593|ref|YP_005841991.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
gi|383795456|gb|AFH42539.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
Length = 472
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
I L++ + G L + TS F+H ++ HI NM L+ FG S+ +G + L LY+ I
Sbjct: 80 ILLEDPVQGVLR-IFTSMFTHANIFHIFFNMYFLWIFGRSVENAIGHKRFLILYLLSGIA 138
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF- 273
S+FY AF+ + D PA+GASGA++ I+ + L P L F F
Sbjct: 139 ASIFYF---AFIPIGGY-------DSLVIPAIGASGAISGILGAYLLLFPNTKLMFCLFF 188
Query: 274 ------IPVPAFLLGVFLIGKDMLRIIEGNSNISGS---AHLGG 308
IPV + +FLI ++I G + G AH+GG
Sbjct: 189 IFIPICIPVSSI---IFLIIWFSEQVIYGFLELGGVAYFAHVGG 229
>gi|384422473|ref|YP_005631832.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Chicago]
gi|291060339|gb|ADD73074.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 194
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
L++AN AVF++ + + + L + R++ + T F H V H++ NM+GL
Sbjct: 5 LVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGVWHLLFNMLGL 62
Query: 189 YFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
FFG +I + +G +L Y+ G + G+ V LG
Sbjct: 63 VFFGQTIEKKMGSSEMLLFYLLVGTLCGA-------------GACAAYLCVGRLNVLLLG 109
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLG 307
ASG++ AI+ L + P A +Y IP+PA LL V I ++ + N+S HL
Sbjct: 110 ASGSIFAILFLFSVMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSRDNVSHLTHLL 169
Query: 308 GAAVAALAWARIRRR 322
G AW IR R
Sbjct: 170 G---VLFAWGYIRIR 181
>gi|374598050|ref|ZP_09671052.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|423323612|ref|ZP_17301454.1| hypothetical protein HMPREF9716_00811 [Myroides odoratimimus CIP
103059]
gi|373909520|gb|EHQ41369.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|404609377|gb|EKB08760.1| hypothetical protein HMPREF9716_00811 [Myroides odoratimimus CIP
103059]
Length = 215
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202
+ D F A + LD G ++ +IT+ F H+D H NM LY F + G
Sbjct: 22 LQDYSFFAK-YNFDLDRIRKGEVYRMITAGFLHVDWMHFAFNMFTLYMFSGIVVAISGSF 80
Query: 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
Y + +Y+ I G++ L Y + +RQ A+GASG V ++ I L
Sbjct: 81 YFVLIYLLSIIIGNI--LTYQLYF---KQRQ---------YYAVGASGGVTGVVYASILL 126
Query: 263 NPKATLYFDFFIPVP----AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 318
P LY FFIP+ F LG L + + + + NI +AH GG A+ L
Sbjct: 127 YPDLKLYL-FFIPIGIKGYIFALGYLL--YSLYGMKKKSDNIGHAAHFGG-AIGGLVLTL 182
Query: 319 IR 320
IR
Sbjct: 183 IR 184
>gi|213961658|ref|ZP_03389924.1| rhomboid family protein [Capnocytophaga sputigena Capno]
gi|213955447|gb|EEB66763.1| rhomboid family protein [Capnocytophaga sputigena Capno]
Length = 208
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Query: 145 DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+P F N + ++ G L++S F H D +H++ NMI LYFF I ++G
Sbjct: 22 NPTFF-NRYKFNVGAVQKGDYVRLLSSGFLHADWQHLIFNMISLYFFQDVIIGSMGNLLF 80
Query: 205 LKLYMAGAIGGSVFYL-VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
L +Y + GS+F L +Y K Q + A+GASGAV+ I+ I L
Sbjct: 81 LLIYFGSMLLGSIFSLRIY--------KHQPYY-------SAIGASGAVSGIIFAAIALY 125
Query: 264 PKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISGSAHLGGA 309
PK TL +F +P +L G G + + + N+ +AHLGGA
Sbjct: 126 PK-TLSVNF---LPGWLFGALYFGYSVFMMFNPQKGDNLGHTAHLGGA 169
>gi|116331862|ref|YP_801580.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125551|gb|ABJ76822.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 197
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPVKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYAYFSSKSGHSDGINHDAHLWGA 172
>gi|402493804|ref|ZP_10840553.1| rhomboid family protein [Aquimarina agarilytica ZC1]
Length = 216
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ +S F H D H++ NM LY F + LG L +Y+A GS F ++H
Sbjct: 47 MFSSGFLHADWSHLIFNMYTLYIFSPIVISFLGNLNYLIIYVASLGLGSAFSYLFHK--- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLI 286
+ A+GASGAV+ I+ I L P+ L+ F IP+PA++ G+ +
Sbjct: 104 -----------NEPHYSAIGASGAVSGILYASILLYPQMELFIMFIPIPIPAYVFGIGYL 152
Query: 287 GKDMLRIIEGNSNISGSAHLGGAA 310
+ + NI AH GGA
Sbjct: 153 LYSIYGMRSNRDNIGHDAHFGGAV 176
>gi|387793463|ref|YP_006258528.1| hypothetical protein Solca_4362 [Solitalea canadensis DSM 3403]
gi|379656296|gb|AFD09352.1| putative membrane protein [Solitalea canadensis DSM 3403]
Length = 236
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----- 218
R+ LIT AF D HI NM ++ FG I LG + YM AIG +
Sbjct: 55 RIWQLITYAFLQYDFGHIFFNMFAVFMFGSVIENYLGSKRFFSYYMITAIGAMILQLSLS 114
Query: 219 -YLVYHAFLAMSSKRQGMWVVDPS---------RTPALGASGAVNAIMLLDIFLNPKATL 268
Y VY Q + +P TP +GASGAV ++L L P++ L
Sbjct: 115 AYQVYQLTGTFIPYSQETDITNPVVMAKIQDIYSTPTIGASGAVFGLLLAFGLLFPESLL 174
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEG-----NSNISGSAHLGGAAVAAL---AWARIR 320
Y FF P+ A F+I + + G N++ AHLGG + W +IR
Sbjct: 175 YVYFFFPIKA---KYFVIIYGAIELWMGIANRPGDNVAHYAHLGGMLFGFILLKVW-KIR 230
Query: 321 RRG 323
+ G
Sbjct: 231 KPG 233
>gi|424886582|ref|ZP_18310190.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393175933|gb|EJC75975.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 265
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+A + + H L
Sbjct: 74 TYLTYAFVHSGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYLA----CAAAGALCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
AM+S+ P +GASGA++ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 AMTSQ-----------APLVGASGAISGVVAAYVLLHPRVRVWVLVFFRLPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I + ++S AH+GG AL +RR G
Sbjct: 179 LLWIGQQFFMLAIAPDGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|344232149|gb|EGV64028.1| rhomboid-domain-containing protein [Candida tenuis ATCC 10573]
Length = 286
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
S ++Y +I AN VF++W+ +P F M+ + D S +L+ SAFSH H
Sbjct: 83 SWLIYSIIAANGLVFLMWK--NPNFITFMSRYGLLVKDKMYSN--WSLLGSAFSHQSFMH 138
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I NM L FG S+ LG L +Y+ A+ S ++ + S
Sbjct: 139 IFVNMFVLQSFGTSLCAMLGATNFLVMYLNSAVIASFVSILVPTLMRTSLA--------- 189
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNS 298
+LGASGAV +++ +L PKA + FFIPVP FL I + +
Sbjct: 190 --VGSLGASGAVFSVVGAFSYLIPKAPIAL-FFIPVPGGAWFAFLGAIAYNAAGLFFRWG 246
Query: 299 NISGSAHLGGA-AVAALAWARIRR 321
+AHLGG+ A A W ++
Sbjct: 247 AYDYAAHLGGSMAGVAYGWYYTKK 270
>gi|408673735|ref|YP_006873483.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855359|gb|AFK03456.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 307
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T F+H H++ NM+ ++FG + +G LL +Y+ G I +FY+ + +
Sbjct: 71 TIVTYCFTHYGFLHLLFNMLTFFWFGTLVQEFIGSRKLLNIYLIGGILSGLFYITIYNLI 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
A++++ + + + + T LGAS AV A+M + L P+ Y + + + F +
Sbjct: 131 ALANQSGSLNLNNITPT-ILGASAAVYAVMFAAVALLPEYEFYLFGIVLIKIRYVAWFFL 189
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+L I +S IS HLGG A++ + RRG
Sbjct: 190 ---ILSFIMPSSGIS---HLGG-AISGYFYIYFLRRG 219
>gi|296113687|ref|YP_003627625.1| rhomboid family protein [Moraxella catarrhalis RH4]
gi|416215836|ref|ZP_11623349.1| rhomboid family protein [Moraxella catarrhalis 7169]
gi|416222800|ref|ZP_11626253.1| rhomboid family protein [Moraxella catarrhalis 103P14B1]
gi|416229279|ref|ZP_11627999.1| rhomboid family protein [Moraxella catarrhalis 46P47B1]
gi|416237663|ref|ZP_11631105.1| rhomboid family protein [Moraxella catarrhalis BC1]
gi|416245992|ref|ZP_11634884.1| rhomboid family protein [Moraxella catarrhalis BC8]
gi|416251452|ref|ZP_11637720.1| rhomboid family protein [Moraxella catarrhalis CO72]
gi|416256012|ref|ZP_11639489.1| rhomboid family protein [Moraxella catarrhalis O35E]
gi|295921381|gb|ADG61732.1| rhomboid family protein [Moraxella catarrhalis BBH18]
gi|326562429|gb|EGE12748.1| rhomboid family protein [Moraxella catarrhalis 7169]
gi|326562798|gb|EGE13093.1| rhomboid family protein [Moraxella catarrhalis 46P47B1]
gi|326563482|gb|EGE13745.1| rhomboid family protein [Moraxella catarrhalis 103P14B1]
gi|326569137|gb|EGE19199.1| rhomboid family protein [Moraxella catarrhalis BC1]
gi|326571330|gb|EGE21347.1| rhomboid family protein [Moraxella catarrhalis BC8]
gi|326572975|gb|EGE22954.1| rhomboid family protein [Moraxella catarrhalis CO72]
gi|326574787|gb|EGE24721.1| rhomboid family protein [Moraxella catarrhalis O35E]
Length = 201
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ L+T F H + H++ NM LYFFG I R Y+ K G +G FY+
Sbjct: 38 GQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERF----YIDKFGNLGFVG---FYISA 90
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L ++ + + + +LGASGAV+A++ I P TLY +P+PA +
Sbjct: 91 IIIAMLPTYARNK-----NNTYYSSLGASGAVSAVLFAYILFAPWNTLYLFAVLPIPAIV 145
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + + NI+ SAHL GA +A
Sbjct: 146 FAIAYVAYSIWADRRDGGNINHSAHLFGAVFGVVA 180
>gi|352081808|ref|ZP_08952650.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389796489|ref|ZP_10199541.1| hypothetical protein UUC_02216 [Rhodanobacter sp. 116-2]
gi|351682714|gb|EHA65810.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388448413|gb|EIM04397.1| hypothetical protein UUC_02216 [Rhodanobacter sp. 116-2]
Length = 201
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYH 223
H L+T H D H++ NMI L+FF GR + + ++ G G ++FY+ +
Sbjct: 42 HRLVTYGLVHADFGHLLFNMITLFFF----GRVMEGFFAARM---GPFGFALFYIGGLVV 94
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+ L K +G +PS +LGASGAV+A++ I L P + + IP+PA + V
Sbjct: 95 SILPTYLKNRG----NPSYR-SLGASGAVSAVLFAFILLAPWSRI-IVLVIPMPAIVYAV 148
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
G + G N++ SAHL GAA
Sbjct: 149 LYTGYSIYMDRRGQGNVNHSAHLWGAA 175
>gi|393778701|ref|ZP_10366964.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|392611587|gb|EIW94322.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 412 str.
F0487]
Length = 208
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I ++G L +Y + GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|209878672|ref|XP_002140777.1| rhomboid family protein [Cryptosporidium muris RN66]
gi|209556383|gb|EEA06428.1| rhomboid family protein [Cryptosporidium muris RN66]
Length = 315
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 43/211 (20%)
Query: 92 DGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA----------NTAVFMLW 141
+ KV+ ++P F +S L G+ E Y I+ N VF LW
Sbjct: 8 NSKVVPLITKYPILDFGKLYMSHKSALFTQGTHE--YNRIMVDRYTNLLNTINVVVFSLW 65
Query: 142 RIADP------KFMANNFTISLDNF---LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
R A KF+ NFT ++ + +++T +TS SHI + H++SN+ L
Sbjct: 66 RYAINSNLSMLKFLERNFTCNISDSSYSFQKKIYTPLTSGVSHITLSHLLSNLWALNTII 125
Query: 193 MSIGR--TLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASG 250
S+ R ++ + ++ LY AG+I G++ H+ + ++T +GASG
Sbjct: 126 NSLKRDNSIKGKDIILLYAAGSISGAI----AHSMI--------------TKTVVVGASG 167
Query: 251 AVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
AV +++ + + P+ T F P+P L
Sbjct: 168 AVMSLLTAEAIIRPRDT--FTLMFPIPGITL 196
>gi|416157627|ref|ZP_11605249.1| rhomboid family protein [Moraxella catarrhalis 101P30B1]
gi|416236217|ref|ZP_11630556.1| rhomboid family protein [Moraxella catarrhalis 12P80B1]
gi|421780491|ref|ZP_16216979.1| rhomboid family protein [Moraxella catarrhalis RH4]
gi|326563202|gb|EGE13470.1| rhomboid family protein [Moraxella catarrhalis 12P80B1]
gi|326573790|gb|EGE23747.1| rhomboid family protein [Moraxella catarrhalis 101P30B1]
gi|407812179|gb|EKF82965.1| rhomboid family protein [Moraxella catarrhalis RH4]
Length = 206
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-- 220
G+ L+T F H + H++ NM LYFFG I R Y+ K G +G FY+
Sbjct: 43 GQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERF----YIDKFGNLGFVG---FYISA 95
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ A L ++ + + + +LGASGAV+A++ I P TLY +P+PA +
Sbjct: 96 IIIAMLPTYARNK-----NNTYYSSLGASGAVSAVLFAYILFAPWNTLYLFAVLPIPAIV 150
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
+ + + NI+ SAHL GA +A I
Sbjct: 151 FAIAYVAYSIWADRRDGGNINHSAHLFGAVFGVVATIAIE 190
>gi|119720561|ref|YP_921056.1| rhomboid family protein [Thermofilum pendens Hrk 5]
gi|119525681|gb|ABL79053.1| Rhomboid family protein [Thermofilum pendens Hrk 5]
Length = 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG------RLHTLITSAFSHIDVE 179
V G+I+ N AV+++ + ++ ++ F+ L+ L TS F H ++
Sbjct: 19 VTLGIILVNVAVYLVSSYENGFLAVSDAWVNAFAFVPAYFARPEHLYRLFTSMFLHANLA 78
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
HI NM+ LY FG S+ LG E LY A I SVF + AFL +
Sbjct: 79 HIFFNMLYLYTFGKSVEAVLGSERYFLLYFASGILASVF---HTAFLPIEGASSAF---- 131
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKATL---YFDFFIPV 276
PALGASGA++ ++ + L P L +F FIP+
Sbjct: 132 ---VPALGASGAISGVLGAYLLLFPGTRLTMCFFYVFIPL 168
>gi|282880538|ref|ZP_06289245.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
gi|281305641|gb|EFA97694.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
Length = 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-- 221
R++ L T F H EH+ NM L+ FG + R GP+ L Y+ +G +F +
Sbjct: 46 RIYQLFTYMFMHASFEHLFFNMFALWMFGCVVERVWGPKKFLFFYLTCGVGAGLFQEMAQ 105
Query: 222 YHAFLAM------SSKRQGMWV-VDP--SRTPALGASGAVNAIMLLDIFLNPKATLY-FD 271
Y +FL S + +G+ + +D +R +GASGAV ++L + P+ ++ F
Sbjct: 106 YGSFLVEGLPAYDSVQLEGLRISMDEFLNRWTTVGASGAVYGLLLAFGMIFPEERIFIFP 165
Query: 272 FFIPVPAFLLGVFLIGKDM-LRIIEGNSNISGSAHLGGAAVA 312
IP+ A + G + + + N++ AHLGG V
Sbjct: 166 LPIPIKAKWFVILYAGISLVMALTTTGGNVAHFAHLGGMVVG 207
>gi|171914466|ref|ZP_02929936.1| Rhomboid family protein [Verrucomicrobium spinosum DSM 4136]
Length = 323
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 130 LIIANTAVFMLWRIADPKF---MANNFT-------ISLDNFLSGRLHTLITSAFSHIDVE 179
L+I N AVF+L M + T SL L GR+ TL+T F H ++
Sbjct: 28 LVIINVAVFVLQVFGVGSSVVVMPDGTTDWQPWGAFSLQALLQGRVWTLVTHMFVHGNLF 87
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+V N + L+F G + +GP Y L +Y +GG+ F V ++A
Sbjct: 88 HLVCNCLMLFFSGKGLQSLVGPRYFLYIYFIAGLGGA-FLEVLVGWMA------------ 134
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPK--ATLYFDFFIPVPA--FLLGVFLIGK------- 288
+ +GAS AV + + + P+ T IPV + L + ++G
Sbjct: 135 GQQHAVIGASAAVIGVFVAMAVMLPQEVVTAMISLIIPVRVRMWTLALVVMGVSAVLGVL 194
Query: 289 DMLRIIEGNSNISGSAHLGGA 309
+MLR+I ++ ++ AHLGGA
Sbjct: 195 EMLRVI--DTGVAHFAHLGGA 213
>gi|328868857|gb|EGG17235.1| hypothetical protein DFA_08225 [Dictyostelium fasciculatum]
Length = 463
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
Query: 120 QYGSSEVVYGLIIA-NTAVFMLWRIADPKFMA---NNFTISLDNFLSGRLHTLITSAFSH 175
Q S V G IIA N +++L + +P F A ++F S+ N S L L+ S FSH
Sbjct: 198 QIKESWKVLGTIIAINGIIYLL--LQNPAFFAKYGSHFLCSVSNVTSHPL-CLVLSNFSH 254
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
+ H + NM+GL+ FG S +G L LYM G + GS MSS Q +
Sbjct: 255 LQPLHFLFNMVGLWSFGQSAHDYMGTLPFLALYMGGGMVGS-----------MSSIIQKL 303
Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
V D P++GASG + +++ I P + FF P +F
Sbjct: 304 IVRDFG-IPSIGASGCILSVVAASIMFEPTNRVSLIFF-PFASF 345
>gi|326674503|ref|XP_001331983.4| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Danio rerio]
Length = 362
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
V G+I N VF WR+ + M FT + + ++ S FSH + H+ +N
Sbjct: 150 CVSGIIAVNAFVFCCWRVPSLQHLMVKYFTSNPSS--KALCWPMLLSTFSHYSLFHLSAN 207
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M L+ F SI +G E + LY++ + + ++ Y + AM R G P
Sbjct: 208 MYVLWSFSSSIINMMGKEQFMALYLSTGVIST--FVSYVSKTAMG--RLG---------P 254
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNIS 301
+LGASGA+ A++ P+A L F+P+ F G L + D +I G
Sbjct: 255 SLGASGAIMAVLAAVCTKMPEAKLAI-IFLPMYTFTAGNALKAIVALDTTGLILGWRFFD 313
Query: 302 GSAHLGGA 309
+AHLGGA
Sbjct: 314 HAAHLGGA 321
>gi|429757186|ref|ZP_19289734.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429169223|gb|EKY10993.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 208
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + +H++ N
Sbjct: 2 NITFIIILLVTIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWQHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I +++G L +Y + GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIIKSMGNLLFLFIYFGSMLLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|218680104|ref|ZP_03528001.1| putative transmembrane rhomboid family protein [Rhizobium etli CIAT
894]
Length = 261
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+A + + H L
Sbjct: 74 TYLTYAFVHAGFWHLAGNMIFLWVFGDNVEDAMGHLRFLMFYLA----CAAAGALCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGAV+ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 GMTSQ-----------APLVGASGAVSGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ IG+ + I S++S AH+GG L +RR G
Sbjct: 179 LLWIGQQFFMLAITPESDVSWGAHVGGIIAGGLLILVLRRPG 220
>gi|305666982|ref|YP_003863269.1| hypothetical protein FB2170_12031 [Maribacter sp. HTCC2170]
gi|88709215|gb|EAR01449.1| hypothetical protein FB2170_12031 [Maribacter sp. HTCC2170]
Length = 216
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANN-----FTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+Y L IA A+ + + K +N + ++ SG+ +++S F H+D+ H+
Sbjct: 1 MYDLHIATIAIIAVNVLVSLKGFNDNSFFDRYKFAIGAIKSGQKDRMLSSGFLHVDMSHL 60
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM L+FF + + GP + +Y + GS+ L +H D
Sbjct: 61 FMNMFTLFFFADVVIKWFGPTKFVGIYFISLLAGSLLALFFHK--------------DEP 106
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNI 300
A+GASGAV I+ I L P L F IP+PA++LG+ + + + + NI
Sbjct: 107 YYSAVGASGAVTGILYAAILLQPDMRLGIMFIPIPLPAYVLGIGYLLYSIYGMKKRLGNI 166
Query: 301 SGSAHLGGA 309
+AH GGA
Sbjct: 167 GHTAHFGGA 175
>gi|359406802|ref|ZP_09199455.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
gi|357554895|gb|EHJ36590.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
Length = 310
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVEHIVS 183
+ L+I N VF+ + + N + L FL+ H L T F+H HI
Sbjct: 7 ITKNLLIVNVVVFLATYLFRTMGVDLNNVLGLHFFLAPDFHIYQLFTYMFAHGGFSHIFF 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV---------FYLVYHAFLAMSSKRQG 234
NM L+ FG + RT GP+ L Y+ +G + FY + L + Q
Sbjct: 67 NMFALWMFGCIVERTWGPKKFLTYYIVCGVGAGLFQELAQFAQFYFIASEQLPHFTLAQT 126
Query: 235 MWVVDPSRT-----PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFL 285
M V + + +GASGAV I+L L P+ + F F +PVP F++G
Sbjct: 127 MKVANANAAFLNLWTTVGASGAVYGILLAFGMLYPEERI-FIFPLPVPIKAKWFVMGYAA 185
Query: 286 IGKDMLRIIEGNSNISGSAHLGG 308
I M G+ ++ AHLGG
Sbjct: 186 IELFMAYSSTGDG-VAHLAHLGG 207
>gi|116327525|ref|YP_797245.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116120269|gb|ABJ78312.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 197
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHEDWMHLIFNMISFYSFGKNLETTVGPVKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYAYFSSKSGHSDGINHDAHLWGA 172
>gi|299529356|ref|ZP_07042794.1| Rhomboid-like protein [Comamonas testosteroni S44]
gi|298722605|gb|EFI63524.1| Rhomboid-like protein [Comamonas testosteroni S44]
Length = 500
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 130 LIIANTAVFMLWRIADPKFMANN--------FTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+I AN W+ A F + +++S +N + TS F H H+
Sbjct: 116 VITANHPRHAQWQAARAAFAPHEPRGSFTERWSMSYENGAGWQPLQAFTSIFLHGSTSHL 175
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+ NM+ L+ FG ++ LG L Y+ G IG S+F L+++A +
Sbjct: 176 LGNMVFLFLFGFTLELALGAFTYLAFYVIGGIGASLFALMFYASMGGYG----------- 224
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDF-------FIPVPAFLLGVFLIGKDMLRII 294
LGASGA++A+M + + + F + + PA ++ +G ++L+ +
Sbjct: 225 ----LGASGAISALMAMYAVMYRMRRIRFFYMLLFYFNYARWPALIMLPVWMGVELLQHL 280
Query: 295 EGNSNISGSAHLGGAAVAA-LAWARIR 320
G ++ AH GG A L W+ +R
Sbjct: 281 LGGKQVAYMAHFGGLLTGALLMWSYMR 307
>gi|448543306|ref|ZP_21624875.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-646]
gi|448550192|ref|ZP_21628715.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-645]
gi|448559536|ref|ZP_21633610.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-644]
gi|445706850|gb|ELZ58723.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-646]
gi|445710926|gb|ELZ62721.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-644]
gi|445711967|gb|ELZ63753.1| rhomboid-like intramembrane serine protease [Haloferax sp. ATCC
BAA-645]
Length = 299
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G S +LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKF-----------SALFLVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + R++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGR 274
>gi|385809854|ref|YP_005846250.1| hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
gi|383801902|gb|AFH48982.1| Hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
Length = 267
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F H HI NM L+ FG + LG + L Y+ I + +L L
Sbjct: 37 LITYQFMHGGFGHIFFNMFALWMFGAEVEYILGSKKFLIFYLFSGITAGLLHLFISPLLG 96
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+GASGAV +M L P ++ F IPV A L FLI
Sbjct: 97 ------------SPLAVTIGASGAVFGVMTAFAMLFPDRYIFLYFLIPVKAKYLIGFLIV 144
Query: 288 KDMLRIIEGNSNISGSAHLGGA 309
+ L I SN++ AHLGGA
Sbjct: 145 FEFLAIDSAASNVAHLAHLGGA 166
>gi|227539014|ref|ZP_03969063.1| Rhomboid family protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227241217|gb|EEI91232.1| Rhomboid family protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 208
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R++T+ TS H D H++ NMI Y+FG + A G +F ++Y
Sbjct: 49 RVYTIFTSGLIHKDWGHLLFNMITFYYFGFGLESIFAG--------ISAWGHFLFAILYL 100
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L +S + + +LGASGA++A++ I +P+A L F IP+ A+L V
Sbjct: 101 FSLVLSDIPTILQQKNNPGYYSLGASGAISAVLFGYILFDPQAELGIFFVIPMKAYLFAV 160
Query: 284 FLIGKDMLRIIEGNSNISGSAH 305
+G + N I+ SAH
Sbjct: 161 LFMGYSYWASRKANDGINHSAH 182
>gi|328791984|ref|XP_395657.3| PREDICTED: rhomboid-7 [Apis mellifera]
Length = 237
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 20/206 (9%)
Query: 108 ASFRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
+R++ +W R E ++ + N VF+ W I P F + N S R
Sbjct: 13 TGWRHKMETWWRNLSEGERIFVPICFLNVLVFLSWHI--PAFRPTMYRYFCSNPTSNRCW 70
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++ FSH + H++ NM LY F LG E L LY+ + S +Y A +
Sbjct: 71 PMLFVTFSHYSLLHLIINMYVLYDFCKIAVTELGREQFLALYLTSGVVSSFSSYLYKASV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL- 285
+ + P+LGASGA+ ++ P L F+P+ F +
Sbjct: 131 GI-------------KDPSLGASGAIMGVLGFVCTQFPNVYLSI-VFLPMLKFTASSAIK 176
Query: 286 --IGKDMLRIIEGNSNISGSAHLGGA 309
+G D + + + +AHLGGA
Sbjct: 177 AVMGLDTVGCLMRWQRLDHAAHLGGA 202
>gi|383767403|ref|YP_005446385.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
gi|381387672|dbj|BAM04488.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
Length = 310
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 130 LIIANTAVFMLWRI---------ADP----KFMANNFTISLDNFLSGRLHTLITSAFSHI 176
LI+ N AVF+L I ADP F N L+ + +T F H
Sbjct: 37 LIVINAAVFLLAGIFGGSARADGADPLRWGYFSVNKAIWGLE------VWRFLTYQFLHA 90
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
D HI+ NMIGLYFFG + R LG L Y+ + G+V V G
Sbjct: 91 DFFHILFNMIGLYFFGPLLERELGRRAFLAFYLLCGVSGAVIATVLGTLF-------GPT 143
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGVFLIGKDMLRII 294
++ P P +GASGA+ I+ P + P+P + + + +G L ++
Sbjct: 144 IMHPD-APLVGASGALFGILAAAAVRFPHLRVQL-LIPPIPMSMRTMALVFLGIAALSVL 201
Query: 295 EGNSNISG-SAHLGGA 309
G+ N G +AHLGGA
Sbjct: 202 VGSRNAGGEAAHLGGA 217
>gi|399575421|ref|ZP_10769179.1| rhomboid family protein/GlpG-like protein [Halogranum salarium B-1]
gi|399239689|gb|EJN60615.1| rhomboid family protein/GlpG-like protein [Halogranum salarium B-1]
Length = 270
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H +HI N I LYFFG + + LG + L++ I +
Sbjct: 94 TWVTSIFAHGGFQHIAFNSIALYFFGPVVEQRLGGKKYAALFLGAGI------------V 141
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
A ++ + + T +GASGA+ AIM + LNP +Y F IP+P L V
Sbjct: 142 AGLAQIGSSFALGDPVTGVVGASGAIMAIMGVLTVLNPNLKVYLYFIIPMP---LWVLTF 198
Query: 287 GKDMLRIIE---------GNSNISGSAHLGGAAVAALAWARIR 320
G +L ++ N++ AHL G V + ++I+
Sbjct: 199 GFAILSVVAGFGSFGGGVLGGNVAHIAHLAGLVVGLVYGSQIK 241
>gi|255726324|ref|XP_002548088.1| hypothetical protein CTRG_02385 [Candida tropicalis MYA-3404]
gi|240134012|gb|EER33567.1| hypothetical protein CTRG_02385 [Candida tropicalis MYA-3404]
Length = 327
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTLITSAFSHIDVEHIVSN 184
+++ +I N AVF++WRI ++ + I DN S +L+ SAFSH + H N
Sbjct: 128 LLWSIIGINGAVFLMWRIPRFQWFTMKYGILFKDNIQSS--WSLLGSAFSHQNFFHFFVN 185
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L FG ++ LG +Y+ A+ S L FL S
Sbjct: 186 MLALQSFGSTLIAYLGVSNFTTMYLNSAVISSFASLAIPTFLGSSLS-----------VA 234
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK--DMLRIIEGNSNISG 302
+LGASGA+ ++ + +L P A + F FFIP+P +FL + + +
Sbjct: 235 SLGASGAIFSVFGVFSYLFPGAPVGF-FFIPIPGGSWTLFLGTTVWNAVGTVLRWGTFDY 293
Query: 303 SAHLGGAAVA 312
+AHLGG+ +
Sbjct: 294 AAHLGGSIIG 303
>gi|336121537|ref|YP_004576312.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
gi|334856058|gb|AEH06534.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
Length = 191
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
ITS F H H+ NM L+FFG+ + + +G LK++ I G++ YL+Y
Sbjct: 43 ITSIFIHGSFTHLFLNMFVLFFFGLRLEKWIGGANFLKIFFISGIAGNIAYLLYS----- 97
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK-ATLYFDFFIPVPAFLLGVFLIG 287
S Q PA+GASGA++ I+ L+P + F F IP+ + G
Sbjct: 98 YSTNQ--------YIPAVGASGAISGIIGALTILDPNMEIMIFPFPIPIKLKYATILFAG 149
Query: 288 KDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRR 322
++L +I I +AHLGG L + +R
Sbjct: 150 FEILCLIFSIMPTIGHAAHLGGLFTGMLCGKLLNKR 185
>gi|242785950|ref|XP_002480704.1| rhomboid family protein, putative [Talaromyces stipitatus ATCC
10500]
gi|218720851|gb|EED20270.1| rhomboid family protein, putative [Talaromyces stipitatus ATCC
10500]
Length = 629
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 112 YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITS 171
Y R W ++ + G+I N +V+MLW+I M N + IS+ L +++ S
Sbjct: 401 YGTRMWRDIPPAAATILGIIATNVSVWMLWKIPPAWRMLNRYFISVP--LYPYAMSVVGS 458
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
FSH +H+++N + L+ G+ + +G L LY++ + GS L H L
Sbjct: 459 IFSHQQFKHLLTNTVILWLIGLRLHDEIGRGNFLSLYLSSGVIGSFVSLTSHVLL----- 513
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
Q + V +LGASGA+ ++ L+ L VP+FL
Sbjct: 514 -QRLTVT------SLGASGAIAGLVAAWCMLHSDDKL-------VPSFL 548
>gi|332882561|ref|ZP_08450173.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332679361|gb|EGJ52346.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 208
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + ++ G LI+S F H + EH++ NMI L+FF + ++G + +Y
Sbjct: 27 NRYMFNVGAVQKGDYVRLISSGFLHANWEHLIFNMISLFFFYEVVTDSMGELLFVLIYFG 86
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
+ G+VF L + KRQ S A+GASGAV+ I+ I L PKA +
Sbjct: 87 SMLLGNVFSLQIY-------KRQ-------SYYSAIGASGAVSGIIFTAIALYPKA-IKV 131
Query: 271 DFFIPVPAFLLGVFLIGKDMLRII--EGNSNISGSAHLGGA 309
+F +P +L G G + + + N+ +AH+GGA
Sbjct: 132 NF---LPGWLFGALYFGYSVFMMFNPQKGDNLGHTAHIGGA 169
>gi|189501441|ref|YP_001960911.1| rhomboid family protein [Chlorobium phaeobacteroides BS1]
gi|189496882|gb|ACE05430.1| Rhomboid family protein [Chlorobium phaeobacteroides BS1]
Length = 273
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 130 LIIANTAVFMLWRIADP-----KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+I+AN AVF+L P + + ++ S +L LIT F H HI+ N
Sbjct: 23 IILANIAVFLLQF--SPLGIYLMYFGPLWPVASSGEYSFQLWQLITYMFMHGGFAHILFN 80
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M L+ FG I G + Y IG ++ L+ A S+ P
Sbjct: 81 MFALWLFGAEIENYWGTKEFTTYYFVCGIGAALLNLLTTA---------------GSQYP 125
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN-----SN 299
+GASGAV I+L + P +Y F PV A G ++L I + SN
Sbjct: 126 TVGASGAVFGILLAFGMMFPDRYIYLYFLFPVKAKYFVAGYAGIELLMGINNSTMGSGSN 185
Query: 300 ISGSAHLGGAAVAALAWARIRRRGF 324
I+ AHLGG V L + + R++G+
Sbjct: 186 IAHFAHLGGMLV-GLVYIKSRQQGW 209
>gi|385811261|ref|YP_005847657.1| hypothetical protein IALB_2686 [Ignavibacterium album JCM 16511]
gi|383803309|gb|AFH50389.1| Hypothetical protein IALB_2686 [Ignavibacterium album JCM 16511]
Length = 231
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
+++F S + T+ +S F H HI+ NMI LY FG ++ LG L Y+ I S
Sbjct: 53 INDFDSFEIGTIFSSMFLHGGWAHILGNMIALYIFGDNVEDRLGSFRYLLFYLLTGIAAS 112
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-------TLY 269
+ H FL +S P +GASGA++ +M IFL P A L+
Sbjct: 113 ----LTHIFLNQNSI-----------VPTIGASGAISGVMAAYIFLYPTAKVITVFPILF 157
Query: 270 FDFFIPVPAFLL-GVFLIGK---DMLRIIEGNSNISGS---AHLGG 308
F + I +PA + GV+ I + +L I+ G AH+GG
Sbjct: 158 FPYIIELPAIVYTGVWFITQFFSGVLTIVADVQAFGGVAYWAHIGG 203
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 37/194 (19%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LII+N A+++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPITYILIISNVALWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHYNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
EHI+ NM+ LY FG + LG +L +Y+ I G+ L ++
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFN--------------- 260
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPVPAFLLGVFLIGKDMLRII 294
+ T ++GASGA+ ++ IF A LY FD + + V LIG +
Sbjct: 261 --TTTISVGASGAIFG-LIGSIF----AILYLSKTFDKKVIGQLLIALVILIGLSLFM-- 311
Query: 295 EGNSNISGSAHLGG 308
SNI+ AHLGG
Sbjct: 312 ---SNINVMAHLGG 322
>gi|429747512|ref|ZP_19280777.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429163022|gb|EKY05284.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 208
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I ++G L +Y GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIISSMGNLMFLLIYFGSMFLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGYNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|313675606|ref|YP_004053602.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312942304|gb|ADR21494.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 205
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 20/162 (12%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG------RTLGPEYLLKLYMAGAIGGSV 217
+ + +ITS F H D H++ NM+ LYFFG ++ G + LY++ + +
Sbjct: 40 QYYRMITSGFLHADYVHLIFNMLTLYFFGDAVEYYFNQLTNYGTFLYVGLYLSAIVVSDI 99
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
L+ H + ALGASGAV+A++ I NP L + +P
Sbjct: 100 PSLIKHK--------------ENPNYNALGASGAVSAVVFSSILFNPMTDLCLYGLLCLP 145
Query: 278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
F+ G + + + N++ AHL GA L I
Sbjct: 146 GFIFGAIYVIYSYYKGKQQGDNVNHDAHLFGALYGVLITVAI 187
>gi|207739329|ref|YP_002257722.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
gi|206592703|emb|CAQ59609.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
Length = 197
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + RTLG LY+A + + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQI---AVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLG-VFL 285
+S+ G P +GASG V ++L L P+ + F IP+PA+L V+
Sbjct: 105 LSTVPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLFPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +I+ AHLGG A L W +RRR
Sbjct: 156 LIELTLGLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|386336259|ref|YP_006032429.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
gi|334198709|gb|AEG71893.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
Length = 197
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + RTLG LY+A + + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQI---AVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLG-VFL 285
+S+ G P +GASG V ++L L P+ + F IP+PA+L V+
Sbjct: 105 LSTIPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLFPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +I+ AHLGG A L W +RRR
Sbjct: 156 LIELTLGLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|390444462|ref|ZP_10232239.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
gi|389664469|gb|EIM75961.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
Length = 323
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL T F H + HI+ NM+ LY+FG+ + LG L +Y+ G + G+ YL+ +
Sbjct: 72 TLFTYMFLHEGIFHILFNMLFLYWFGLIVNEYLGSRKLANIYVLGGLAGAALYLLIYNIS 131
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
M S+ V SR LGAS V A+++ L+P T PV + +F +
Sbjct: 132 PMFSES-----VSSSRM--LGASAGVYAVVVGAATLDPNRTFQLLILGPVKIKYIALFYV 184
Query: 287 GKDMLRII----EGNSNISGS-AHLGGAAVA 312
II +N G AHLGGAA+
Sbjct: 185 ------IIAFANSAGANAGGELAHLGGAAMG 209
>gi|448572797|ref|ZP_21640558.1| rhomboid-like intramembrane serine protease [Haloferax lucentense
DSM 14919]
gi|448597019|ref|ZP_21654157.1| rhomboid-like intramembrane serine protease [Haloferax alexandrinus
JCM 10717]
gi|445719569|gb|ELZ71248.1| rhomboid-like intramembrane serine protease [Haloferax lucentense
DSM 14919]
gi|445740900|gb|ELZ92405.1| rhomboid-like intramembrane serine protease [Haloferax alexandrinus
JCM 10717]
Length = 299
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + R++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGR 274
>gi|292654890|ref|YP_003534787.1| rhomboid-like intramembrane serine protease, N-terminal Zn finger
[Haloferax volcanii DS2]
gi|448292892|ref|ZP_21483213.1| rhomboid-like intramembrane serine protease [Haloferax volcanii
DS2]
gi|291370526|gb|ADE02753.1| rhomboid-like intramembrane serine protease, N-terminal Zn finger
[Haloferax volcanii DS2]
gi|445571867|gb|ELY26410.1| rhomboid-like intramembrane serine protease [Haloferax volcanii
DS2]
Length = 296
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + R++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGR 274
>gi|423300722|ref|ZP_17278746.1| hypothetical protein HMPREF1057_01887 [Bacteroides finegoldii
CL09T03C10]
gi|408472609|gb|EKJ91135.1| hypothetical protein HMPREF1057_01887 [Bacteroides finegoldii
CL09T03C10]
Length = 301
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYILGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G T +GAS +V A++ + P + F V L + +
Sbjct: 128 PLFSSQVPG--------TTLVGASASVLAVVAATAYREPNYRVQLLLFGAVRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|163788830|ref|ZP_02183275.1| hypothetical protein FBALC1_11352 [Flavobacteriales bacterium
ALC-1]
gi|159876067|gb|EDP70126.1| hypothetical protein FBALC1_11352 [Flavobacteriales bacterium
ALC-1]
Length = 211
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+I+S F H DV+H + NM+ L+FF ++ LG + +Y+A I G++ L +H
Sbjct: 47 MISSGFLHADVKHFLFNMLTLFFFAHTVIDELGNFNFITIYLASLIFGNLLSLYFH---- 102
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
++ W A+GASGAV ++ I + P + F +P ++ G+ +
Sbjct: 103 ----KEEYW------YSAIGASGAVTGVLYAAILIEPNLRINF-----IPGYIFGIGYLL 147
Query: 288 KDMLRIIEGNSNISGSAHLGGAA 310
+ + NI AH GGA
Sbjct: 148 YSIYGMKNRIGNIGHDAHFGGAV 170
>gi|392396626|ref|YP_006433227.1| hypothetical protein Fleli_0986 [Flexibacter litoralis DSM 6794]
gi|390527704|gb|AFM03434.1| putative membrane protein [Flexibacter litoralis DSM 6794]
Length = 214
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-VYHA 224
+ L++S F H + H+ NM+ +FFG + + Y G + GSV +L VY
Sbjct: 47 YRLLSSGFIHNGLSHLGFNMLTFFFFGGVVEQVYVQNY-------GDVWGSVIFLGVYLV 99
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGV 283
+ +S D +LGASG V+AI+ I P L+ IP+PAF+LG
Sbjct: 100 AIVISDLPTFFKYKDMPAYSSLGASGGVSAIVFASILFQPTNDLFLLLIPIPIPAFILGT 159
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAA 310
+ + + NI+ SAHL GA
Sbjct: 160 VYVIYSYYQSKNSSDNINHSAHLYGAV 186
>gi|290996734|ref|XP_002680937.1| predicted protein [Naegleria gruberi]
gi|284094559|gb|EFC48193.1| predicted protein [Naegleria gruberi]
Length = 219
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 93/210 (44%), Gaps = 38/210 (18%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
LI N AVF+L I + M +S+ N GRLHTL+TS F+H D+ HI NM L
Sbjct: 28 LIALNVAVFVLSNIFLTREEMVTYLGVSVHNLREGRLHTLLTSMFTHSDLLHIFMNMYAL 87
Query: 189 YFFGMSI---GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR--- 242
G + R L P Y+ G +G SV+ L K G +++
Sbjct: 88 SQIGRMMPMTRRLLWPGYIF----CGLVGSSVYIL---------DKWIGSTILNRPHEYY 134
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL-------GVF--LIGKDMLR- 292
+ +GASGA+ ++ ++P FIPV F L VF I + R
Sbjct: 135 SVGVGASGAIFGLLAFVTQVHP--------FIPVGIFFLPFQFKLRSVFYSFIAFECYRW 186
Query: 293 IIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+S++S S HLGGA L + R+R
Sbjct: 187 YTNRDSSVSASGHLGGAFGGLLFFLLNRKR 216
>gi|383316784|ref|YP_005377626.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043888|gb|AFC85944.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 216
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 14/144 (9%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R LI+ AF H V HI+ NM+ L+ FG +I RTLG + Y A + ++
Sbjct: 57 RPWQLISYAFMHGSVTHILFNMLALWMFGGTIERTLGTPRFVIYYFACLVCAAL------ 110
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFL-L 281
A LA+++ W + P P LGASGAV ++L P+ +YF +P+PA+L +
Sbjct: 111 AQLAVTA-----WFL-PGFYPTLGASGAVFGLLLAFGVFYPREKVYFMLIPVPLPAWLFV 164
Query: 282 GVFLIGKDMLRIIEGNSNISGSAH 305
++ + + + + + + ++ AH
Sbjct: 165 TLYALAELLFGVTQTQAGVAHFAH 188
>gi|195027586|ref|XP_001986663.1| GH20399 [Drosophila grimshawi]
gi|193902663|gb|EDW01530.1| GH20399 [Drosophila grimshawi]
Length = 345
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L++ N F LWR+ M N + + R+ + S FSH V HI +NM
Sbjct: 145 LLVCNLLAFALWRLPA---MRNTMMTYFTSNPAARIVCWPMFLSTFSHYSVMHIFANMYV 201
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
L+ F + ++G E + +Y++ + S+ ++Y A +K+ GM +LG
Sbjct: 202 LHSFSNAAVLSMGKEQFMAVYLSAGVFSSLMSVLYKA----GTKQPGM---------SLG 248
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSA 304
ASGA+ ++ P L F+P F G ++G D + G +A
Sbjct: 249 ASGAIMTVLAYVCAQYPDTQLSI-LFLPAVTFSAGAAIKVIMGIDFAGCVMGWKFFDHAA 307
Query: 305 HLGGA 309
HLGGA
Sbjct: 308 HLGGA 312
>gi|403220814|dbj|BAM38947.1| integral membrane protein [Theileria orientalis strain Shintoku]
Length = 418
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 48/219 (21%)
Query: 136 AVFMLWRIAD-------PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI-- 186
+VF LW++A+ FM+N+F S + + R HTLITSA SH H N +
Sbjct: 167 SVFALWKLAENTVSQKFTDFMSNHFVASYEAIKAKRYHTLITSAISHTSFLHFGLNCMFF 226
Query: 187 ---------GLYFFGMSIGRTLGP--------------EYLLKLYMAGAIG-GSVFYLVY 222
+ F + T+ Y +K+ AGA+ +F ++
Sbjct: 227 HQLMKTFHNNMAFQTPPVNSTIQSFARSFFSANHVFPGSYPVKMKKAGAVNTNDIFNVLL 286
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
+ + S M+ +TP +GASGA++ +M L P YF P+P L
Sbjct: 287 LSAVLSSLGHVLMY-----KTPVVGASGAISGLMYLLAATFPNT--YFKTVFPLPGMNLS 339
Query: 283 VFLIGKDMLRI-------IEGNSNISGSAHLGGAAVAAL 314
+ IG+ L ++G SNI+ +AHL G A AL
Sbjct: 340 ILQIGQLFLATNLYFLMYVKG-SNIAWAAHLFGMAGGAL 377
>gi|85819154|gb|EAQ40313.1| rhomboid family protein [Dokdonia donghaensis MED134]
Length = 210
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 21/143 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++SAF H + +H++ NM+ LYFF ++ T+G P +LL + +G + Y ++
Sbjct: 47 MVSSAFLHANTQHLLFNMLTLYFFANAVIYTIGVPRFLLVYVSSLLLGNLLSYFLHK--- 103
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
D A+GASGAV ++ I LNP+ +YF +P ++ GV +
Sbjct: 104 ------------DEYHYSAVGASGAVMGVVYAGILLNPRLEIYF-----MPGWVFGVGYM 146
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
+ +++ N NI AH GGA
Sbjct: 147 IYSIYGMVKRNDNIGHDAHFGGA 169
>gi|376316159|emb|CCF99558.1| peptidase, S54 (rhomboid) family [uncultured Dokdonia sp.]
Length = 210
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 21/143 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++SAF H + +H++ NM+ LYFF ++ T+G P +LL + +G + Y ++
Sbjct: 47 MVSSAFLHANTQHLLFNMLTLYFFANAVIYTIGVPRFLLVYVSSLLLGNLLSYFLHK--- 103
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
D A+GASGAV ++ I LNP+ +YF +P ++ GV +
Sbjct: 104 ------------DEYHYSAVGASGAVMGVVYAGILLNPRLEIYF-----MPGWVFGVGYM 146
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
+ +++ N NI AH GGA
Sbjct: 147 IYSIYGMVKRNDNIGHDAHFGGA 169
>gi|456864209|gb|EMF82623.1| peptidase, S54 family [Leptospira weilii serovar Topaz str. LT2116]
Length = 197
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGSIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|433436322|ref|ZP_20408189.1| rhomboid-like intramembrane serine protease, N-terminal Zn finger,
partial [Haloferax sp. BAB2207]
gi|432191705|gb|ELK48642.1| rhomboid-like intramembrane serine protease, N-terminal Zn finger,
partial [Haloferax sp. BAB2207]
Length = 283
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + R++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGR 274
>gi|429752744|ref|ZP_19285583.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429175754|gb|EKY17174.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 208
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Query: 145 DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+P F N + ++ G L++S F H D +H++ NM+ LYFF I ++G
Sbjct: 22 NPTFF-NRYKFNVGAVQKGDYVRLLSSGFLHADWQHLIFNMVSLYFFQDVIIGSMGNLLF 80
Query: 205 LKLYMAGAIGGSVFYL-VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLN 263
L +Y + GS+F L +Y K Q + A+GASGAV+ I+ I L
Sbjct: 81 LLIYFGSMLLGSIFSLRIY--------KHQPYY-------SAIGASGAVSGIIFAAIALY 125
Query: 264 PKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISGSAHLGGA 309
PKA L +F +P +L G G + + + N+ +AHLGGA
Sbjct: 126 PKA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGHAAHLGGA 169
>gi|424811470|ref|ZP_18236721.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalinarum sp. J07AB56]
gi|339757196|gb|EGQ40777.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalinarum sp. J07AB56]
Length = 294
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 14/164 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++ H H+++NM+ LYFFG ++ R + LK Y+ I S+ ++++ L
Sbjct: 125 TLLSVMVLHGSPFHLLANMVTLYFFGTALERVMNKADYLKFYIGSGIAASIGFVLFRNLL 184
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--------A 278
A S QG + PA+GASGAV A+ L P A + F +P+ A
Sbjct: 185 AASG--QGASALG----PAVGASGAVVAVFAAVAMLYPDAEMLLYFIVPMKLKTGLYLFA 238
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
L G ++ K ++ + SAH+ G V R+R R
Sbjct: 239 ALEGFNMLAKSAGVVLPVIGGFASSAHMAGLIVGYWYGKRLRDR 282
>gi|327405503|ref|YP_004346341.1| Rhomboid family protein [Fluviicola taffensis DSM 16823]
gi|327321011|gb|AEA45503.1| Rhomboid family protein [Fluviicola taffensis DSM 16823]
Length = 295
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+TS FSH + H++ NMI LYF G + ++ +Y+ G I G +F ++ H
Sbjct: 75 VTSIFSHFEFFHLLFNMIFLYFIGGIFKQFFSDRRMVHVYVWGGIVGGIFEVIAHQ---- 130
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
V +GASG++ A+ + P + IPV +++ + +G
Sbjct: 131 ---------VTNQYPVVIGASGSIMALFIAMAVYRPNIEVRLFGIIPVKLYIIALIYLGS 181
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALA 315
++L++ + + I+ AH+GGA + L+
Sbjct: 182 EILQMTQIDG-IAHFAHIGGALIGLLS 207
>gi|398330785|ref|ZP_10515490.1| intramembrane protease [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 197
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|156548506|ref|XP_001605844.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Nasonia vitripennis]
gi|345486034|ref|XP_003425391.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 2 [Nasonia vitripennis]
Length = 341
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 31/240 (12%)
Query: 79 TSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAV 137
T L ++R + F G F+ + + + +R + R W E + Y + AN V
Sbjct: 89 TILEYERIRANTFKGYKNFYWSS--KATVIGWRAQTRDWWSNLSEGERMWYFICFANVLV 146
Query: 138 FMLWRIA--DP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
F+ WRI P K+ + N S+ ++ S FSH ++ H+ +NM L+ F
Sbjct: 147 FLAWRIPTWQPIMLKYFSTNPASSVTCL------PMVLSMFSHYNLWHLAANMYVLHSFS 200
Query: 193 MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAV 252
+ LG E+ L +Y++ + S+F Y L KR G +LGASGA+
Sbjct: 201 GAAVSYLGREHFLAVYLSSGVISSMFSNTYKILL----KRHGF---------SLGASGAI 247
Query: 253 NAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF---LIGKDMLRIIEGNSNISGSAHLGGA 309
I+ P L +P F G +I D + G +AHLGGA
Sbjct: 248 MGILAFICTQFPDTKLNI-ILLPQLTFSAGAAIKSIIAFDTAGCVMGWQFFDHAAHLGGA 306
>gi|241952839|ref|XP_002419141.1| serine protease, putative [Candida dubliniensis CD36]
gi|223642481|emb|CAX42730.1| serine protease, putative [Candida dubliniensis CD36]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+++ LI N AVF++WRI ++ + I + L TL+ SAFSH H N
Sbjct: 127 SLLWSLIGINGAVFLMWRIPRLQWFTMKYGILFKDNLQSPW-TLLGSAFSHQSFAHFFIN 185
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ L FG ++ LG +Y+ A+ S L FL S
Sbjct: 186 MLALQSFGSTLVAFLGVSNFTIMYLNSAVISSFASLAIPMFLGSSLS-----------VA 234
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLRIIEGNSNI 300
+LGASGA+ ++ + FL P + + FFIP+P LG L + G +
Sbjct: 235 SLGASGAIFSVFGVFSFLFPASPVGL-FFIPIPGGAWMLFLGTTLWNAAGTVLRWGTFDY 293
Query: 301 SGSAHLGGAAVA 312
+AHLGG+ V
Sbjct: 294 --AAHLGGSIVG 303
>gi|219118201|ref|XP_002179880.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408933|gb|EEC48866.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 51/214 (23%)
Query: 133 ANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFF 191
A+ AVFMLWR+ A + +F ++ N SGRL TL S+ SHI H+ N+ L
Sbjct: 123 ASLAVFMLWRVPAVRPILQKHFVVNRLNLQSGRLLTLFLSSVSHIGFYHLAVNIAALLSL 182
Query: 192 GMSIGRTLGPEY---LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
G + R L + L L + A SV AFLA+ QG LG
Sbjct: 183 GPVVQRMLFSQSRWPLWPLIVGAASVSSV------AFLALDRSGQG---------SCLGL 227
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLR---------------- 292
SG + LL +F A +Y P +LG+ L G +R
Sbjct: 228 SGVT--VALLAVF----ARMY-------PTHVLGILLAGVIPIRLQASQLLQLVFIWSLF 274
Query: 293 --IIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
+ + +S ++ SAHLGG + LA+ + +R F
Sbjct: 275 GSVAQIHSQVAHSAHLGG-ILFGLAYCEVWKRRF 307
>gi|119496153|ref|XP_001264850.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
gi|119413012|gb|EAW22953.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
Length = 568
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W ++ + ++ AN +F+LW+ M N + IS+ F L +++ + FS
Sbjct: 349 RLWPDMPPAAATAFAIMGANLTIFLLWKFPPAWRMLNRYFISVP-FKPHPL-SIVGNVFS 406
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H +H++ NM+ L+F G + +G L LYMA GS+ L H + G
Sbjct: 407 HQQFKHMLLNMLMLWFIGTKLHDDIGRGNFLGLYMAAGAFGSMLSLTGHVLM-------G 459
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP-----VPAFLLGVFLIGKD 289
++ +LGASGA++ I+ L+ + FF+P V + V L G
Sbjct: 460 QLMIT-----SLGASGAISGIVAAWCLLHSQERFTI-FFLPREWQEVISAKGWVLLTGFV 513
Query: 290 MLRIIEGNS-----NISGSAHLGG---AAVAALAW 316
I S + AHLGG AV ALAW
Sbjct: 514 AFEIFNLVSPFRVMKLDHFAHLGGYLIGAVWALAW 548
>gi|418738312|ref|ZP_13294708.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410746486|gb|EKQ99393.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 197
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL G
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGT 172
>gi|385802609|ref|YP_005839009.1| rhomboid family protein [Haloquadratum walsbyi C23]
gi|339728101|emb|CCC39223.1| rhomboid family protein [Haloquadratum walsbyi C23]
Length = 306
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AG 211
F +S D+ G + T +TS F+H HI N I LYFFG + R L + L++ AG
Sbjct: 122 FVLSPDHV--GYIWTWLTSIFAHGGFAHIAFNSIALYFFGPVVERYLDTKRFTALFIGAG 179
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
I G ++ + + P+ +GASGA+ ++ + LNPK +Y
Sbjct: 180 VIAG------------LAQIASTLLTMGPTGAGVVGASGAIMGVLGVLTVLNPKLKVYLY 227
Query: 272 FFIPVPAFLL 281
F IP+P ++L
Sbjct: 228 FIIPMPLWVL 237
>gi|238023223|ref|ZP_04603649.1| hypothetical protein GCWU000324_03150 [Kingella oralis ATCC 51147]
gi|237865606|gb|EEP66746.1| hypothetical protein GCWU000324_03150 [Kingella oralis ATCC 51147]
Length = 220
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ + LITS F H D H+ NM LYFF I G + LY+ + G+ F
Sbjct: 45 QYYRLITSGFLHADWGHLFFNMFTLYFFARPIMFYYGVFVFVWLYIGSIVAGNAF----- 99
Query: 224 AFLAMSSKRQGMWVVD--PSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+W+ PS A+GASG V+ ++ I L P T+ +FIPV A++
Sbjct: 100 ----------SLWLYKNRPSYA-AIGASGGVSGVLFAAIALAPTQTI-GVYFIPVTAWIF 147
Query: 282 GVFLIGKDMLRIIEGN--SNISGSAHLGGAAVA 312
+ +++ NI +AHLGGAA+
Sbjct: 148 ATLYFAYSVAMLLKPRPWDNIGHAAHLGGAALG 180
>gi|405382590|ref|ZP_11036371.1| putative membrane protein [Rhizobium sp. CF142]
gi|397320996|gb|EJJ25423.1| putative membrane protein [Rhizobium sp. CF142]
Length = 284
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H H+ NMI L+ FG ++ +G L Y+A + + H L
Sbjct: 97 TYITYSFIHTSFWHLAGNMIFLWVFGDNVEDAMGHLRFLVFYLA----CAAAGALCHGLL 152
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI----PVPAFLLG 282
+ S+ P +GASGA++ ++ + L+P+ ++ FI P+PAF+
Sbjct: 153 STISE-----------APLVGASGAISGVVAAYLMLHPRVRVWVLVFIRVPLPLPAFIPL 201
Query: 283 VFLIGKD-MLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ +G+ + +++ + N+S AH+GG AL +RR G
Sbjct: 202 LLWVGQQFFMLLVDPDGNVSWGAHVGGIIAGALLILILRRPG 243
>gi|448303188|ref|ZP_21493138.1| rhomboid family protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445594195|gb|ELY48362.1| rhomboid family protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 312
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I ++FFG + R +G + L++ + + + +
Sbjct: 133 TWVTSIFAHGGFLHIVFNSIVIFFFGPLVERYVGSKKFAVLFIVSGVVAGLSQIGIQMY- 191
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
QG V P +GASGA AIM + LNP T+Y F +PVP ++L
Sbjct: 192 ------QG---VPPGMGGVVGASGAALAIMGVITVLNPSLTVYLYFVLPVPIWVL---TA 239
Query: 287 GKDMLRII----EGNSNISGSAHLGGAAVAALAWARIRRR 322
G ++ ++ G +I+ AHL G V L++ +R
Sbjct: 240 GTALISVVFIGTGGGGDIAHMAHLVG-LVIGLSYGEYVKR 278
>gi|83748711|ref|ZP_00945727.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
gi|83724601|gb|EAP71763.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
Length = 224
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + RTLG LY+A + + + A +
Sbjct: 75 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQI---AVMG 131
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLI 286
+S+ G P +GASG V ++L L P+ + F IP+PA+L
Sbjct: 132 LSTVPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLFPPIPMPAWLF----- 177
Query: 287 GKDMLRIIEGNSNISGS-------AHLGG-AAVAALAWARIRRR 322
+ +IE +SGS AHLGG A L W +RRR
Sbjct: 178 -ATVYALIELTLGLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 220
>gi|195436535|ref|XP_002066223.1| GK22246 [Drosophila willistoni]
gi|194162308|gb|EDW77209.1| GK22246 [Drosophila willistoni]
Length = 363
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 22/200 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSA 172
R W +V L++ N F LWR+ M N + + R+ + S
Sbjct: 148 RQWDSLTPGDKVFAPLLVFNVLAFALWRVPS---MRNTMMTYFTSNPAARVVCWPMFLST 204
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
FSH HI +NM L+ F + ++G E + +Y++ + S+ ++Y A +++
Sbjct: 205 FSHYSAMHIFANMYVLHSFANASVLSMGKEQFMAVYLSAGVFSSLVSVLYKA----GTRQ 260
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKD 289
GM +LGASGA+ A++ P L F+P F G ++G D
Sbjct: 261 TGM---------SLGASGAIMAVLAYVCAQYPDTQLSI-LFLPTLTFSAGAAIKVIMGID 310
Query: 290 MLRIIEGNSNISGSAHLGGA 309
+ G +AHLGGA
Sbjct: 311 FAGCVLGWKFFDHAAHLGGA 330
>gi|71021275|ref|XP_760868.1| hypothetical protein UM04721.1 [Ustilago maydis 521]
gi|46100964|gb|EAK86197.1| hypothetical protein UM04721.1 [Ustilago maydis 521]
Length = 484
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 24/207 (11%)
Query: 134 NTAVFMLWRIADPKFMANNFTISLDNFL----SGRLHTLITSAFSHIDVEHIVSNMIGLY 189
NT VF LW +A + + NF+ + R+ T++TS FSH + H V N + L+
Sbjct: 245 NTLVFGLWTVASARRGGAMWRWMTTNFVHRPSANRMRTMLTSVFSHQTLLHYVFNNVALW 304
Query: 190 FFGMSI----------------GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
G S + P++L AG +V +LV S R
Sbjct: 305 SIGGSALMVAAHRSTNSAENIPEASPTPQFLAFFVTAGLFAATVSHLVAGIRFKRISLRH 364
Query: 234 GMWVVDPS--RTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGVFLIGKD 289
G+ V + R +LG+SGAV + +++ P A L F F+ VP + ++ D
Sbjct: 365 GIDVARATVGRHASLGSSGAVYSALVMSACAFPDAKLGIIFLPFVSVPIGVGLAGIVAVD 424
Query: 290 MLRIIEGNSNISGSAHLGGAAVAALAW 316
+ ++ AHLGGAA AL W
Sbjct: 425 VAGVLFRWKMFDHWAHLGGAAFGALYW 451
>gi|110667202|ref|YP_657013.1| rhomboid family protein/GlpG-like protein [Haloquadratum walsbyi
DSM 16790]
gi|109624949|emb|CAJ51362.1| rhomboid family protein [Haloquadratum walsbyi DSM 16790]
Length = 306
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AG 211
F +S D+ G + T +TS F+H HI N I LYFFG + R L + L++ AG
Sbjct: 122 FVLSPDHV--GYIWTWLTSIFAHGGFAHIAFNSIALYFFGPVVERYLDTKRFTALFIGAG 179
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
I G ++ + + P+ +GASGA+ ++ + LNPK +Y
Sbjct: 180 VIAG------------LAQIGSTLLTMGPTGAGVVGASGAIMGVLGVLTVLNPKLKVYLY 227
Query: 272 FFIPVPAFLL 281
F IP+P ++L
Sbjct: 228 FIIPMPLWVL 237
>gi|315223785|ref|ZP_07865634.1| S54 family peptidase [Capnocytophaga ochracea F0287]
gi|420159472|ref|ZP_14666273.1| peptidase, S54 family [Capnocytophaga ochracea str. Holt 25]
gi|314946231|gb|EFS98231.1| S54 family peptidase [Capnocytophaga ochracea F0287]
gi|394762122|gb|EJF44412.1| peptidase, S54 family [Capnocytophaga ochracea str. Holt 25]
Length = 208
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + +H++ N
Sbjct: 2 NITFIIILLATIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWQHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
MI LYFF I ++G L +Y + GSVF L + K+Q +
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIY-------KKQPYY-------S 106
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII--EGNSNISG 302
A+GASGAV+ I+ I L P A L +F +P +L G G + + + N+
Sbjct: 107 AIGASGAVSGIIFAAIALYPTA-LSVNF---LPGWLFGALYFGYSVFMMFNPQQGDNLGH 162
Query: 303 SAHLGGA 309
+AHLGGA
Sbjct: 163 AAHLGGA 169
>gi|332665287|ref|YP_004448075.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332334101|gb|AEE51202.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 230
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R + L++ F H D+ H++ NM+GLY FG ++ G L Y+ +GG + YL +
Sbjct: 63 RPYQLVSHMFMHADIRHLLLNMLGLYMFGSALETFWGERKFLFYYLFSGLGGMLLYL-FV 121
Query: 224 AFLAMSSKRQGMWVVD--PSRTPALGASGAVNAIML---------LDIFLNPKATLYFDF 272
+L +SS V+ P LGASGA+ +M+ + L P +L +
Sbjct: 122 KYLEISSGNVEDQVMKYYLQNVPMLGASGAIFGLMVGYGMQFPDNVISLLFPPISLKAKY 181
Query: 273 FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
F+ + A L F +G I+ +S ++ AHLGGA L R+ G
Sbjct: 182 FVLIFAGLELFFGLG-----IVNISSGVAHFAHLGGALFGFLLILYWRKYG 227
>gi|301098061|ref|XP_002898124.1| serine protease family S54, putative [Phytophthora infestans T30-4]
gi|262105485|gb|EEY63537.1| serine protease family S54, putative [Phytophthora infestans T30-4]
Length = 344
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 117/295 (39%), Gaps = 69/295 (23%)
Query: 59 SLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRA---QFPERSFASFRYRWR 115
SL L + + ++ ++ + +R + D LF+ + QF E
Sbjct: 60 SLGLVSGGIIVTSVVNKQEEDTDFKEAIRNLYGDANDLFYSSNGRQFGE----------- 108
Query: 116 SWLRQYGSSEVVYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDNFLSG-RLHTLI 169
SW + + V LI ANT VF LWR + +FM +F S D + G R HTL+
Sbjct: 109 SWYEDT-NKKAVAALIAANTLVFGLWRASFRNARLHQFMWRHFASSYDAVVYGKRFHTLL 167
Query: 170 TSAFSHIDVEHIVSNMIGLYFFG------------------MSIGRTLG----------- 200
TSAFSHI H NM L+ FG +S R G
Sbjct: 168 TSAFSHITFPHFGINMFMLWEFGPHILAPSNNNSGAWYNRAVSNSRFAGYVRESYSSFSR 227
Query: 201 -PEYL-----LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNA 254
PE L + LY A+ S A A+ SK +G V ++GASGAV+A
Sbjct: 228 RPELLSIEKFMALYFTSAMTSS-------ALSALVSKLRGNGAV-----FSIGASGAVSA 275
Query: 255 IMLLDIFLNP-KATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
+ + L P + L + F A +L ++ + + N + HLGG
Sbjct: 276 VFTVSCLLFPDQRLLLYGIFDMTSAQMLQLYTALNILGAAYQRNLRVDCVGHLGG 330
>gi|453081015|gb|EMF09065.1| hypothetical protein SEPMUDRAFT_120949 [Mycosphaerella populorum
SO2202]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 98 FRAQFPERSF--ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA----DPKFM-- 149
FR F + S A YR W V L+ N VF W A D + +
Sbjct: 3 FRRAFNDSSLFNAQASYRSAKW--------AVGTLLFFNGGVFGAWTYARGSRDTELLRQ 54
Query: 150 -ANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT--LGPEYLLK 206
+ T+S N +GR +T +TSAFSH ++ H NM L+ +G + +G ++
Sbjct: 55 LEEHATLSEHNLAAGRYYTYVTSAFSHKELPHFAFNMFALFTYGGLLASVPGIGALHIYG 114
Query: 207 LYMAGAIGGSVFYLVY--------HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
L + +I S ++ + + S+ G ++ R LGASG V A +
Sbjct: 115 LAITSSIAASAAFITHRRRKTKQREKKRDLQSRFSGNAII---RETGLGASGIVMAAAAV 171
Query: 259 DIFLNPK-ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
L P + F +P+P ++ + D I +G+ I AHLGG A A+
Sbjct: 172 ATCLRPTIQVVIFPMPMPMPLYVATGLVAAVDAYMIDKGD-KIGHDAHLGGFAWGAV 227
>gi|357606391|gb|EHJ65050.1| hypothetical protein KGM_14236 [Danaus plexippus]
Length = 347
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITS 171
+W L++ S +V Y ++ AN VF WR+ FM F + + + + ++ S
Sbjct: 132 KWWKSLKE--SEKVFYPILAANVLVFGAWRVRSFQPFMIKYFCSNPSSVV--KCLPMVLS 187
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
FSH H+ +NM LY F + +LG E + +Y++ + S +Y S
Sbjct: 188 TFSHYSALHLAANMYVLYSFMPAAIASLGKEQFVAMYLSAGVISSFASFIYKVI----SN 243
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGK 288
+ G+ +LGASGA+ +++ P L F+P+ F G ++
Sbjct: 244 QPGL---------SLGASGAIMSVLSYVCVQYPDTRLSI-IFLPMYTFAAGNAIKVIMSV 293
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWA 317
D ++ G +AHLGG A+ +AW
Sbjct: 294 DFAGVLFGWKFFDHAAHLGG-ALFGMAWC 321
>gi|260641830|ref|ZP_05859099.1| rhomboid family protein [Bacteroides finegoldii DSM 17565]
gi|260624579|gb|EEX47450.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 309
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 161 LSGRLH---TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
L G +H +L T F H + HI+ NM+ LY+FG ++L LY+ G I G +
Sbjct: 67 LVGFIHQPWSLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYILGGICGGL 126
Query: 218 FYLV-YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
Y+V Y+ F SS+ G +V GAS +V AI+ + P + F V
Sbjct: 127 LYMVAYNVFPLFSSQVTGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAV 178
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
L + +IG D+L I N+ AHLGGA
Sbjct: 179 RLKYLALVVIGIDVLSITSSNAG-GHIAHLGGA 210
>gi|32474230|ref|NP_867224.1| hypothetical protein RB6387 [Rhodopirellula baltica SH 1]
gi|32444768|emb|CAD74769.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 169 ITSAFSHIDVE----HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
+T F H E HI+ NM L+ FG + + LG + L+ Y+ I G + ++Y
Sbjct: 72 LTYGFMHNTEEVLPLHILFNMFLLFVFGSPVEQRLGGQEFLRFYLIAVIAGGIVGMLYPC 131
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
A+S + G + +GASGAV A+M+L P + F F PV A++L
Sbjct: 132 --AISLFQTGQLSPEIIGVSTIGASGAVIAVMVLFACYFPHQEVLFMFVFPVKAWVLASV 189
Query: 285 LIGKDM---LRIIEGNSNISGSAHLGGA 309
L+ D+ L + S+ + HL GA
Sbjct: 190 LVLIDLVSALGLFGSASSTAFEVHLAGA 217
>gi|421098295|ref|ZP_15558966.1| peptidase, S54 family [Leptospira borgpetersenii str. 200901122]
gi|410798563|gb|EKS00652.1| peptidase, S54 family [Leptospira borgpetersenii str. 200901122]
Length = 197
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFLLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G+S+ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGHSDGINHDAHLWGA 172
>gi|410940231|ref|ZP_11372047.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
gi|410784675|gb|EKR73650.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
Length = 199
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + + Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMVSFYSFGRNLEMTVGPIWFVLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGV- 283
S R+ + D LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---DNPLYSTLGASGGVCGVLFATILFYPDLSLYMMFIPIPIPGAIYAVL 146
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGA 309
+L+ I+ AHL GA
Sbjct: 147 YLVYTYFSSRGSAADGINHDAHLWGA 172
>gi|170060235|ref|XP_001865712.1| rhomboid protein 1, mitochondrial [Culex quinquefasciatus]
gi|167878776|gb|EDS42159.1| rhomboid protein 1, mitochondrial [Culex quinquefasciatus]
Length = 359
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 19/215 (8%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISL 157
RA+ + +R W + E V+ I A N VF LWR+ + M + S
Sbjct: 126 RARNGRQEVDQWRKEVSGWWSRLTPGERVFAPICALNVVVFGLWRLPQLQPMMVRYFAS- 184
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ + S SH + HI +NM L+ F + TLG E L LY++ + S
Sbjct: 185 NPAARAVCWPMFLSTLSHYSLFHIAANMYVLHSFSHAAVATLGREQFLGLYLSAGVIASF 244
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
V+ + ++ G+ +LGASGA+ A++ P L F+P+
Sbjct: 245 ASHVFKTVM----RQPGL---------SLGASGAIMAVLAYVCTQYPDTQLSI-VFLPMY 290
Query: 278 AFLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F G ++G D+ ++ G +AHLGGA
Sbjct: 291 TFSAGAAIKVIMGIDLAGVLLGWKIFDHAAHLGGA 325
>gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyrum pernix K1]
gi|116062954|dbj|BAA80882.2| putative subfamily S26B peptidase [Aeropyrum pernix K1]
Length = 253
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RL+T+ TS F H HI+ NM+ LY FG +I LG + LY+ +G VF++
Sbjct: 66 RLYTVFTSMFLHGSWAHILGNMLYLYIFGDNIESILGRARYIILYIGSGLGAVVFHIASI 125
Query: 224 AFLAMSS-KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-------YFDFFIP 275
AF+ + + +P PA+GASGA++ ++ L P + + +F +
Sbjct: 126 AFMPSEALINAALSSANPWMIPAVGASGAISGVLGAYALLIPFSRVRMLTFWGWFPLVLS 185
Query: 276 VPA-FLLGVFLIGKDMLRIIEGNSNISGS----AHLGG 308
VPA +G + + + ++ + S +S AH+GG
Sbjct: 186 VPASIFIGFWFVYQLVMGLATSVSGVSAGIAFWAHVGG 223
>gi|404448304|ref|ZP_11013297.1| hypothetical protein A33Q_03170 [Indibacter alkaliphilus LW1]
gi|403765925|gb|EJZ26800.1| hypothetical protein A33Q_03170 [Indibacter alkaliphilus LW1]
Length = 310
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++++ F H + HI+ NM+ LY+FG+ + LG L LY+ G + G+V Y++ +
Sbjct: 72 SILSYMFFHEGIFHILFNMLFLYWFGLLVNEYLGSRKLANLYILGGLAGAVLYVIMYNIS 131
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
S V+ SR LGAS V AI++ L P T PV + +F +
Sbjct: 132 PYFSD-----VLAQSRM--LGASAGVYAIVVGAATLAPNTTFQLILLGPVKIKYIAIFYV 184
Query: 287 GKDMLRIIEGNSNISGS-AHLGGAAVA 312
+ + SN G AHLGGAA+
Sbjct: 185 --VIAFVNSAGSNAGGELAHLGGAAMG 209
>gi|264680766|ref|YP_003280676.1| Rhomboid-like protein [Comamonas testosteroni CNB-2]
gi|262211282|gb|ACY35380.1| Rhomboid-like protein [Comamonas testosteroni CNB-2]
Length = 500
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+++S +N + TS F H H++ NM+ L+ FG ++ LG L Y+
Sbjct: 145 ERWSMSYENGAGWQPLQAFTSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVI 204
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
G IG S+F L+++A + LGASGA++A+M + + + F
Sbjct: 205 GGIGASLFALMFYAGMGGYG---------------LGASGAISALMAMYAVMYRMRRIRF 249
Query: 271 DF-------FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAA-LAWARIR 320
+ + PA ++ +G ++L+ + G ++ AH GG A L W+ +R
Sbjct: 250 FYMLLFYFNYARWPALIMLPVWMGVELLQHLLGGKQVAYMAHFGGLLTGALLMWSYMR 307
>gi|383768245|ref|YP_005447228.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
gi|381388515|dbj|BAM05331.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
Length = 352
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 25/152 (16%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RLH T F H ++ H+ NM+ LY FG ++ LG L Y+AG +
Sbjct: 80 RLHQFFTYPFLHQNLWHLTGNMVFLYAFGCAVEDRLGKLPYLLFYLAGGV---------- 129
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAI--MLLDIFLNPKATLYFDFFI-----PV 276
G V S +P LGASG+V A+ + L +F T+++ F I V
Sbjct: 130 --------LAGWAHVLTSSSPVLGASGSVAAVTGIFLALFPRLDVTIWYWFLIAIGRFEV 181
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
A +L F +G+D+L + N++ AHL G
Sbjct: 182 SAVVLICFRVGQDLLFNLLSIGNVAYEAHLAG 213
>gi|73667754|ref|YP_303769.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
gi|72394916|gb|AAZ69189.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
Length = 207
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 139 MLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
M+ I D F A F N+L R TLIT F H + H++ NM+ LYFFG ++ R
Sbjct: 27 MIPGIGDAYFNAFYFD---PNYLITRPWTLITYIFLHNGLVHLLFNMLVLYFFGTALERR 83
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
+G LL ++ I ++ Y FL Q ++ + P P +GASGA+ +
Sbjct: 84 IGNRQLLAIFFTAGILSAIGY----TFLT-----QPIFNISPG--PMVGASGAIYGVFAA 132
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 318
L P +Y +F+P+ V D L +I + I+ +AHL G V R
Sbjct: 133 LTILEPDIRVYV-YFVPMKLKHALVLFALFDFL-MINSSDMIAHTAHLSGLFVGLYMGFR 190
Query: 319 IRR 321
I++
Sbjct: 191 IKK 193
>gi|290976014|ref|XP_002670736.1| predicted protein [Naegleria gruberi]
gi|284084298|gb|EFC37992.1| predicted protein [Naegleria gruberi]
Length = 415
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 34/216 (15%)
Query: 126 VVYGLIIANTAVFMLWR--IADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
V++G+I N A+ ++ + P+F + + T+S+ N L R HTL+TS F H D H
Sbjct: 140 VIWGIIGLNCAMMLMVKGFKRSPRFHDFYSKHLTVSVHNLLKRRYHTLLTSTFVHGDWLH 199
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLY----MAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
+ M GLY G +GP L Y M ++G S+ L+ + S
Sbjct: 200 LGFCMYGLYNMGSLTYDLMGPTTFLLFYLGAGMTASMGSSLLKLITKNYYQRS------- 252
Query: 237 VVDPSRTPALGASGAVNAIML--LDIFLNPKATLYFDFFIPV------PAFLLGVFLIGK 288
+G+SG++ AI+ L++ KA + F+P + L ++ +G+
Sbjct: 253 ---------VGSSGSIFAIVFAGLNVITFEKAKMNL-IFLPDSWGGFNATYFLPLYFVGE 302
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
+ I + HL GA LA ++ + +
Sbjct: 303 ILYNIFSRRVKLDTGGHLSGALAGYLALEAMKNQSY 338
>gi|448385517|ref|ZP_21564023.1| rhomboid family protein [Haloterrigena thermotolerans DSM 11522]
gi|445657012|gb|ELZ09844.1| rhomboid family protein [Haloterrigena thermotolerans DSM 11522]
Length = 315
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T +TS F+H HIV N + L+FFG + R +G L++ +GA+ G
Sbjct: 133 TWVTSVFAHGGFYHIVGNSVVLFFFGPLVERYIGSRKFAILFLVSGALAGL-------GQ 185
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL-GVF 284
+ + + + M V P +GASGA AI+ + LNP +Y F +PVP ++L G +
Sbjct: 186 ITIQTLQTAM--VTPLTPGVVGASGAALAILGVLTILNPDLKVYLYFILPVPIWVLTGGY 243
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+ G NI+ AHL G V LA+ + ++
Sbjct: 244 ALFSIFFLSTGGGGNIAHMAHLVG-LVIGLAYGQYVKQ 280
>gi|406662505|ref|ZP_11070600.1| Rhomboid family protein [Cecembia lonarensis LW9]
gi|405553578|gb|EKB48783.1| Rhomboid family protein [Cecembia lonarensis LW9]
Length = 312
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+++T F H + HI+ NM+ LY+FG+ + + LG L LY+ G + G+V Y++
Sbjct: 72 SILTYMFFHEGLFHILFNMLFLYWFGLLVDQYLGSRKLANLYILGGLAGAVLYVL----- 126
Query: 227 AMSSKRQGMWVVDPSRTPA------LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
M+ + P + LGAS V A+++ L P T PV
Sbjct: 127 --------MYNISPHFSEVLPFAKMLGASAGVYAVVVGAATLAPNTTFQLLLLGPVKIKY 178
Query: 281 LGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRR 321
+ +F + + + SN G AHLGGAA+ ++R+
Sbjct: 179 IAIFYV--VIAFVNSAGSNAGGELAHLGGAAMGYFYVTQLRK 218
>gi|124027302|ref|YP_001012622.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
gi|123977996|gb|ABM80277.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
Length = 477
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T+ F+H ++ HI NM LY FG ++ +TLG L LY+ I +VF+ V+
Sbjct: 86 ILTAMFTHANLIHIFFNMYFLYLFGRAVEKTLGHWRYLALYLVSGIVAAVFHTVF----- 140
Query: 228 MSSKRQGMWVVDPS--RTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
M+VV+P+ P++GASGA++ ++ + L P L FF+
Sbjct: 141 -------MYVVNPAGLAIPSVGASGAISGVLGAYMLLYPGTRLTACFFL 182
>gi|254504600|ref|ZP_05116751.1| peptidase, S54 (rhomboid) family, putative [Labrenzia alexandrii
DFL-11]
gi|222440671|gb|EEE47350.1| peptidase, S54 (rhomboid) family, putative [Labrenzia alexandrii
DFL-11]
Length = 230
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T AF H D H++ NM+ L+ FG ++ +G IG VFYL L
Sbjct: 76 IVTYAFLHGDFMHLLGNMLFLWVFGDNVEDAVG-----------HIGYFVFYL-----LC 119
Query: 228 MSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP-----AFLL 281
++ +DP S P +GASGAV+ ++ + L+P+ ++ F VP ++L
Sbjct: 120 AAAGGFAYAALDPGSEIPLIGASGAVSGVVAAYLMLHPRVRIWVLAFGRVPLRLRAIWIL 179
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
G ++I + + +S ++ AH+GG A A+ +RRRG
Sbjct: 180 GAWVIYQFVQIATSIDSQVAWIAHIGGLAAGAILILFMRRRG 221
>gi|317140969|ref|XP_001818512.2| rhomboid family protein [Aspergillus oryzae RIB40]
gi|391869875|gb|EIT79065.1| integral membrane protease of the rhomboid family [Aspergillus
oryzae 3.042]
Length = 564
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 345 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 402
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH V H+ NM+ L+F G + +G L LY+A + GS L +
Sbjct: 403 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGSFTSLTVNIL----KGNL 458
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVFL 285
G+ ALGASGA++A++ L+ FF+P +++ L
Sbjct: 459 GL--------TALGASGAISALVAAWCMLHADEKFTL-FFLPPEWQEVASAKGWIVLTGL 509
Query: 286 IGKDMLRIIEGNSNISGSAHLGG 308
+ + + + + I AHLGG
Sbjct: 510 VALEFVNMFTRRALIDYWAHLGG 532
>gi|149914332|ref|ZP_01902863.1| rhomboid family protein [Roseobacter sp. AzwK-3b]
gi|149811851|gb|EDM71684.1| rhomboid family protein [Roseobacter sp. AzwK-3b]
Length = 248
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 90/215 (41%), Gaps = 32/215 (14%)
Query: 126 VVYGLIIANTAVFM-LWRI-ADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
V Y LI N VF+ W + ADP+ F + G T+ TS F H
Sbjct: 16 VTYALIAINVVVFLSYWPLFADPRELNLFFYEWALVPALVSEQGTWSTMATSMFLHGGWM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G L Y+A IG + +++ +
Sbjct: 76 HLAGNMLFLWIFGDNLEDEMGHLGYLAFYLASGIGAAAAHMISAPY-------------- 121
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDF---FIPVPAFLLGVFLIGKDMLR 292
S P +GASGA+ +M + + PKA L+F F IPVPA+++ G +
Sbjct: 122 -SPVPTVGASGAIAGVMGGYLLMFPKARVDVLLFFVFIIRIIPVPAWIMLCLWFGLQLFS 180
Query: 293 IIEGNSNISGS---AHLGGAAVA-ALAWARIRRRG 323
I + G AH GG V AL RRG
Sbjct: 181 SIGADPMAGGVAYWAHAGGFLVGMALTVPLFLRRG 215
>gi|448399932|ref|ZP_21571150.1| rhomboid family protein [Haloterrigena limicola JCM 13563]
gi|445668054|gb|ELZ20688.1| rhomboid family protein [Haloterrigena limicola JCM 13563]
Length = 308
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 25/163 (15%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYH 223
T +TS F+H + HIV N I L+FFG + R +G ++ + ++GA+ G L+
Sbjct: 133 TWVTSVFAHSPGNFMHIVGNSIVLFFFGPLVERYIGSRDFAILFLVSGALAGLGQVLI-- 190
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
S QG + T LGASGA AIM + LNP +Y F +PVP +LL
Sbjct: 191 ------SAAQG------APTAVLGASGAALAIMGVLTVLNPDLKVYLYFILPVPIWLL-- 236
Query: 284 FLIGKDMLRI----IEGNSNISGSAHLGGAAVAALAWARIRRR 322
G + + + G I+ AHL G V LA+ + +R
Sbjct: 237 -TAGYALFSVFFLSVGGGGPIAHGAHLIG-LVIGLAYGQYVKR 277
>gi|424811466|ref|ZP_18236717.1| glycyl-tRNA synthetase, class II [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757192|gb|EGQ40773.1| glycyl-tRNA synthetase, class II [Candidatus Nanosalinarum sp.
J07AB56]
Length = 501
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++ H H+++NM+ LYFFG ++ R + LK Y+ + S+ ++++ L
Sbjct: 333 TLLSVMVLHGSPFHLLANMVTLYFFGTALERVMDKADYLKFYIGSGVAASIGFVLFRNLL 392
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--------A 278
+S + + PA+GASGAV A+ L P A + F +P+ A
Sbjct: 393 EVSGQSSAL-------GPAVGASGAVVAVFAAVAMLYPDAEMLLYFIVPMKLKTGLYLFA 445
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
L G ++ K ++ + SAH+ G V R+R R
Sbjct: 446 ALEGFNMLAKSAGVVLPVIGGFASSAHMAGLIVGYWYGKRLRDR 489
>gi|323135805|ref|ZP_08070888.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
gi|322398896|gb|EFY01415.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
Length = 280
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFML---WRIADPKFMANNFTI---------SLDNFLSGRL 165
+R+ V + LI N VF+L DP + F + +L +++ G
Sbjct: 11 MRRLRRPIVNWTLIALNVVVFLLVYSEAFGDPLTLIRGFAVIPRVLFGEATLADWIVGPP 70
Query: 166 H--TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
TL+TS F H V HI SNM+ LY FG ++ +G + L Y++ +G VFY
Sbjct: 71 APLTLLTSLFFHSSVLHIASNMLFLYVFGDNVEDAMGSLHYLLFYLSCGVGAGVFY---- 126
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
++ S P +GAS A++ + + + L P AT+ FF P+ L+ V
Sbjct: 127 -----------VYTTPDSIAPLIGASSAISGVCVAFLLLYPHATVT-GFFPPLTMLLMPV 174
Query: 284 FLI 286
+ +
Sbjct: 175 WFV 177
>gi|157137243|ref|XP_001663953.1| hypothetical protein AaeL_AAEL013749 [Aedes aegypti]
gi|108869756|gb|EAT33981.1| AAEL013749-PA [Aedes aegypti]
Length = 362
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISL 157
R + R +R W + E ++ I A N VF LWRI + M S
Sbjct: 129 RMKDKRREVEQWRKDVNGWWSKLSPGERIFAPICALNVVVFGLWRIPQLQPMMLRLFAS- 187
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ + S FSH + HI +NM L+ F TLG E L LY++ + S
Sbjct: 188 NPAAKAVCWPMFLSTFSHYSLFHIAANMYVLHSFCHGAVATLGREQFLGLYLSAGVIASF 247
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
V+ + ++ G+ +LGASGA+ I+ P L F+P+
Sbjct: 248 ASHVFKTVM----RQPGL---------SLGASGAIMGILAYVCSQYPDTQLSI-VFLPMF 293
Query: 278 AFLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F G ++G D+ ++ G +AHLGGA
Sbjct: 294 TFSAGAAIKVIMGIDLAGVLLGWKLFDHAAHLGGA 328
>gi|300711871|ref|YP_003737685.1| rhomboid family protein/GlpG-like protein [Halalkalicoccus jeotgali
B3]
gi|448295561|ref|ZP_21485625.1| rhomboid family protein/GlpG-like protein [Halalkalicoccus jeotgali
B3]
gi|299125554|gb|ADJ15893.1| rhomboid family protein/GlpG-like protein [Halalkalicoccus jeotgali
B3]
gi|445583660|gb|ELY37989.1| rhomboid family protein/GlpG-like protein [Halalkalicoccus jeotgali
B3]
Length = 311
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T +TS F+H V HIV N I LYFFG + R +G L++ +G I G
Sbjct: 135 TWVTSIFAHGSVGHIVMNSIVLYFFGPIVERKVGSRNFAALFLVSGVIAG---------- 184
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ G + S + +GASGA+ AI+ + LNP+ + FFIP+P +LL +
Sbjct: 185 ----LAQVGTALALGSFSAVVGASGAIMAILGVLTVLNPQLRVLLFFFIPMPLWLLTLGF 240
Query: 286 IGKDM---LRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+ G I+ AHL G V ++RR G
Sbjct: 241 AAVSIGVVGFGGVGAGGIAHLAHLAGLFVGLAYGEKLRREG 281
>gi|421109529|ref|ZP_15570046.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410005360|gb|EKO59154.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 198
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + Y+ + S
Sbjct: 42 YTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFVLFYLGTILITS--------- 92
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
A+S ++ ++ R LGASG V ++ I P +LY F IP+P + V
Sbjct: 93 -AISWRKN----LNNPRYSTLGASGGVCGVLFATILFYPDLSLYMMFIPIPIPGAIYAVL 147
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 148 YLVYTYFSSKSGAADGINHDAHLWGA 173
>gi|418678720|ref|ZP_13239994.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418685906|ref|ZP_13247077.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418743050|ref|ZP_13299419.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089354|ref|ZP_15550165.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|421131426|ref|ZP_15591608.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|400321910|gb|EJO69770.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001967|gb|EKO52493.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410357209|gb|EKP04476.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410739601|gb|EKQ84328.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410749793|gb|EKR06777.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 197
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + Y+ + S
Sbjct: 41 YTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFILFYLGTILITS--------- 91
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
A+S ++ ++ R LGASG V ++ I P +LY F IP+P + V
Sbjct: 92 -AISWRKN----LNNPRYSTLGASGGVCGVLFATILFYPDLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGAADGINHDAHLWGA 172
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII+N +++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPVTYILIISNVILWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHFNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
EHI+ NM+ LY FG + LG +L +Y+ I G+ F+++S
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGN--------FVSLSFN------- 260
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
+ T ++GASGA+ ++ IF + FD + + V LIG + S
Sbjct: 261 --TTTISVGASGAIFG-LIGSIFAILYLSKTFDKRVIGQLLIALVILIGLSLFM-----S 312
Query: 299 NISGSAHLGG 308
NI+ AHLGG
Sbjct: 313 NINVMAHLGG 322
>gi|13473011|ref|NP_104578.1| hypothetical protein mlr3486 [Mesorhizobium loti MAFF303099]
gi|14023759|dbj|BAB50364.1| hypothetical membrane protein [Mesorhizobium loti MAFF303099]
Length = 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI+ N V+ + F N + F+ +H
Sbjct: 11 LRHIRLQYVTIGLIVVNALVYCATALGGENF--TNAAVLGLGFIPSVVHNTAELDPRFII 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AI G+ F
Sbjct: 69 IPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAF--- 125
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VP 277
QG+ D S+ P +GASGA+ +++ + L P+ ++ F IP +P
Sbjct: 126 -----------QGLVAWD-SQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIP 173
Query: 278 AFL-LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
AF+ L ++++ + + G IS + H+GG A+ +R RG
Sbjct: 174 AFIPLILWVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRG 220
>gi|389775483|ref|ZP_10193424.1| hypothetical protein UU7_05868 [Rhodanobacter spathiphylli B39]
gi|388437299|gb|EIL94105.1| hypothetical protein UU7_05868 [Rhodanobacter spathiphylli B39]
Length = 202
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYH 223
H L+T H D H++ NM+ L+FF GR + + +L G +G ++FY+ +
Sbjct: 42 HRLVTYGVVHADAMHLLFNMVTLFFF----GRAMESFFAARL---GTLGFALFYIGGLVV 94
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+ L K + +P+ +LGASGAV+A++ + L P + + IP+PA + V
Sbjct: 95 SILPTYLKNRA----NPNYR-SLGASGAVSAVLFSFVLLAPWSRI-IVLVIPMPAIVYAV 148
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
G + G N++ SAHL GAA L
Sbjct: 149 LYTGYSIYMDRSGQGNVNHSAHLWGAAYGVL 179
>gi|149277352|ref|ZP_01883494.1| hypothetical protein PBAL39_10691 [Pedobacter sp. BAL39]
gi|149232229|gb|EDM37606.1| hypothetical protein PBAL39_10691 [Pedobacter sp. BAL39]
Length = 202
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
KFM + +++S + +++TLITS H D H++ NM+ YFF + +G
Sbjct: 33 KFMLHPYSVSRKH----KVYTLITSGLIHADWMHLIFNMMSFYFFAFRLESLMGSWQFGL 88
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
LY I + ++ H + MW +LGASGA++A++ I +P +
Sbjct: 89 LYFVSLILSDIPSVIKH--------KDDMW------YNSLGASGAISAVIFSFILFDPMS 134
Query: 267 -TLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
+ F IP+ A+L G+ + +I+ AHL GA
Sbjct: 135 KMIIFPLPIPIWAWLFGILYLAYCWQMSRNAKDHINHDAHLFGA 178
>gi|345304981|ref|XP_001509452.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Ornithorhynchus anatinus]
Length = 286
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHID 177
Q V +I AN VF LWR+ + M FT N S L + ++ S FSH
Sbjct: 69 QCSIKRVPASIIAANVFVFCLWRVPSLQRSMIKYFT---SNPASKTLCSPMLLSTFSHFS 125
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+ H+ +NM L+ F SI LG E + +Y++ V F++ SK V
Sbjct: 126 LFHMAANMYVLWSFSSSIVNILGREQFMAVYLSAG--------VISTFVSYVSK-----V 172
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRII 294
V P+LGASGA+ ++ P++ L +P+ F G L I D +I
Sbjct: 173 VTGRFGPSLGASGAIMTVLAAVCTKLPESKLAI-IILPMFTFTAGNALKAIIAMDTAGMI 231
Query: 295 EGNSNISGSAHLGGA 309
G +AHLGGA
Sbjct: 232 LGWKFFDHAAHLGGA 246
>gi|160891547|ref|ZP_02072550.1| hypothetical protein BACUNI_03999 [Bacteroides uniformis ATCC 8492]
gi|270295353|ref|ZP_06201554.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317478349|ref|ZP_07937513.1| rhomboid family protein [Bacteroides sp. 4_1_36]
gi|423304703|ref|ZP_17282702.1| hypothetical protein HMPREF1072_01642 [Bacteroides uniformis
CL03T00C23]
gi|423310183|ref|ZP_17288167.1| hypothetical protein HMPREF1073_02917 [Bacteroides uniformis
CL03T12C37]
gi|156858954|gb|EDO52385.1| peptidase, S54 family [Bacteroides uniformis ATCC 8492]
gi|270274600|gb|EFA20461.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905508|gb|EFV27298.1| rhomboid family protein [Bacteroides sp. 4_1_36]
gi|392682379|gb|EIY75724.1| hypothetical protein HMPREF1073_02917 [Bacteroides uniformis
CL03T12C37]
gi|392683367|gb|EIY76702.1| hypothetical protein HMPREF1072_01642 [Bacteroides uniformis
CL03T00C23]
Length = 227
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-----YLVY 222
LIT F H HI NM ++ FG + + GP+ L Y+ IG + Y+ Y
Sbjct: 51 LITYMFMHAGFAHIFFNMFAVWMFGRILEQVWGPKRFLFYYLVCGIGAGIIQEVVQYIHY 110
Query: 223 HAFL-AMSSKRQGMWVVDPSR----TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
L A S GM ++ +GASGAV AI+L L P + F F +PVP
Sbjct: 111 ETVLSAYDSVNTGMAIIPMEEYLNMMTTVGASGAVYAILLAFGMLFPNQQM-FIFPLPVP 169
Query: 278 AFLLGVFLIGKDMLRIIEGNSNISGS-----AHLGGAA---VAALAWARIRRRG 323
F+IG ++ + G +N +G AHLGG + + W R + RG
Sbjct: 170 -IKAKYFVIGYALIELYAGFANSAGDNVAHFAHLGGMVFGFILIMYW-RKKNRG 221
>gi|83766367|dbj|BAE56510.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 551
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 332 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 389
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH V H+ NM+ L+F G + +G L LY+A + GS L +
Sbjct: 390 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGSFTSLTVNIL----KGNL 445
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--------VPAFLLGVFL 285
G+ ALGASGA++A++ L+ FF+P +++ L
Sbjct: 446 GL--------TALGASGAISALVAAWCMLHADEKFTL-FFLPPEWQEVASAKGWIVLTGL 496
Query: 286 IGKDMLRIIEGNSNISGSAHLGG 308
+ + + + + I AHLGG
Sbjct: 497 VALEFVNMFTRRALIDYWAHLGG 519
>gi|384099561|ref|ZP_10000647.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
gi|383832909|gb|EID72379.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
Length = 288
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG---RL 165
RYR+ +W + + + + L+++ + F N +L LS +
Sbjct: 6 DLRYRFTTWTAVEKIISITAVVFVLENLLLFLFQLPEDFF---NQWFALPKLLSELVVKP 62
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TL+T AF H + HI NM+ LYF G L +Y GA+ G F+L+ +
Sbjct: 63 WTLLTYAFFHGGLMHIFWNMLLLYFAGRMFLNLFDGRRFLNVYFLGALAGGFFFLLSYNL 122
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
V + +GAS AV A+++ P L F FF + LGVFL
Sbjct: 123 FP---------VFVGVNSVLIGASAAVMAVLIFMCTYTPYQELQF-FFFRFKLWHLGVFL 172
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ D+L++ N AHLGGA
Sbjct: 173 VLWDLLQLPMSNPG-GRIAHLGGA 195
>gi|398341143|ref|ZP_10525846.1| intramembrane serine protease [Leptospira kirschneri serovar Bim
str. 1051]
Length = 198
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + Y+ + S
Sbjct: 42 YTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFILFYLGTILITS--------- 92
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
A+S ++ ++ R LGASG + ++ I P +LY F IP+P + V
Sbjct: 93 -AISWRKN----LNNPRYSTLGASGGICGVLFATILFYPDLSLYMMFIPIPIPGAIYAVL 147
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 148 YLVYTYFSSKSGAADGINHDAHLWGA 173
>gi|347831209|emb|CCD46906.1| similar to rhomboid [Botryotinia fuckeliana]
Length = 339
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 17/185 (9%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
P++ NF +S N GR+HTLIT +F H H+ +NM + +++ + P +
Sbjct: 163 PEYFEKNFVLSQQNIDEGRIHTLITHSFMHQTYYHLFANMYCM----LAMAPLVNPLTFV 218
Query: 206 KLYMAGAIGGSVFYL-VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
++ + S+ L ++ + + + + +D GASG+++ ++ + +P
Sbjct: 219 TIWAGAGVTCSLASLYIWKHGVPFNQNKSSINSID----RGCGASGSLSGLITMLAVKHP 274
Query: 265 KATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN-----ISGSAHLGGAAVAALAWARI 319
+ F F VP + FL+G + I +N + + HLGG+A LA
Sbjct: 275 NVSWQFMF---VPIGIPAWFLVGGGAVYSILALNNGWQPGVGHAGHLGGSAFGILAGVVS 331
Query: 320 RRRGF 324
RR G
Sbjct: 332 RRFGL 336
>gi|393230710|gb|EJD38312.1| hypothetical protein AURDEDRAFT_116565 [Auricularia delicata
TFB-10046 SS5]
Length = 394
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 102 FPERSFASFRYRW-----RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTIS 156
PER F RW S++ Q S V + AN AVF+ WR P+ +
Sbjct: 120 LPERLQGLFALRWPFDKAESFIYQRDSFRVATAITAANVAVFLAWRC--PRLWRSLGRHG 177
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
+ + LSGR +TL T+ F H DV HI N +YFF
Sbjct: 178 IHHGLSGRSYTLFTAGFCHTDVFHIACNTACIYFFA 213
>gi|296420834|ref|XP_002839973.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636181|emb|CAZ84164.1| unnamed protein product [Tuber melanosporum]
Length = 357
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+ S FSH + H+ NM LY FG ++ +G L LY + + S L ++
Sbjct: 191 LLGSVFSHQSLTHLGLNMFALYIFGSTLCDQIGRGNFLGLYFSSGVIASFASLTHNVL-- 248
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+G + V ALGASGAV ++ + NP+ L F F+P F+ G
Sbjct: 249 -----RGRFHVY-----ALGASGAVFGVLGAFTYFNPETKLSF-IFLPFIGLQAKYFMSG 297
Query: 288 KDMLR---IIEGNSNISGSAHLGGA--AVAALAW--ARIRRR 322
ML I+ G I AHL G V W R++RR
Sbjct: 298 VAMLEAFGIVRGWQTIDNVAHLAGLGWGVGMAYWLEQRVKRR 339
>gi|311748629|ref|ZP_07722414.1| rhomboid family protein [Algoriphagus sp. PR1]
gi|126577155|gb|EAZ81403.1| rhomboid family protein [Algoriphagus sp. PR1]
Length = 310
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 107 FASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS---- 162
+ +F R+ R +S +Y LI N VFM+ +A + LS
Sbjct: 2 YGNFWENLRNAFRHNNNS--LYKLIAINLIVFMVILVARVMLTITGYGDLYSAGLSHLMM 59
Query: 163 ----GRLHT----LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
G+L T + T F H + HI+ NM+ L++FG + + LG L LY+ G +
Sbjct: 60 PASLGKLATQPWSIFTYMFLHEGIFHILFNMLFLFWFGQLVHQFLGSRKLANLYVLGGLA 119
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
G++FYL+ + ++ +G +D S LGAS V AI++ L+P T +
Sbjct: 120 GALFYLLIY---NLAPYFRG--AIDSSMM--LGASAGVFAIVVGAATLSPNTTFFLILLG 172
Query: 275 PVPAFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAWARIRR 321
PV + +F + +N G AHLGGA + +RR
Sbjct: 173 PVKIKYIAIFYVILSFAN--SAGANAGGELAHLGGALLGYFYIVELRR 218
>gi|423316811|ref|ZP_17294716.1| hypothetical protein HMPREF9699_01287 [Bergeyella zoohelcum ATCC
43767]
gi|405582563|gb|EKB56558.1| hypothetical protein HMPREF9699_01287 [Bergeyella zoohelcum ATCC
43767]
Length = 214
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+I++ F H D H++ NM LY F I T G L +Y+ I G++F + +
Sbjct: 44 MISAGFLHADFFHLLFNMYTLYIFSPIILSTFGTFSFLAIYLGSIIAGNLFCMYLYK--- 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVFL 285
D S A+GASG V+ ++ I L P L F IPV P F+ G+
Sbjct: 101 -----------DQSWYSAIGASGGVSGVLFASIALYPYLGL-MIFPIPVHIPGFIFGLLY 148
Query: 286 IGKDMLRIIE--GNSNISGSAHLGGAAVA 312
G M ++ NI +AH+GGA +
Sbjct: 149 FGYSMYMMLNPRQGDNIGHAAHIGGAVMG 177
>gi|358449751|ref|ZP_09160232.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
gi|357226120|gb|EHJ04604.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
Length = 484
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYH 223
L+TLIT F H HI+ N+I L+ G ++ + LGP YL+ + GA+ G +
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLIFLFLLGFTVEKALGPGRYLIAYLVCGALSGLM------ 208
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV------- 276
F A+S+ S P +GASG+++ +M + + + + F +F+ V
Sbjct: 209 -FTAVSAG---------SYVPLVGASGSISGLMGMYVAIYGLQKIRFFYFLGVYFNYFRA 258
Query: 277 PAFLLGVFLIGKDMLRI-IEGNSNISGSAHLGG-AAVAALAW 316
PA L +GK++ G + I+ AH GG A A L W
Sbjct: 259 PAIALLPVWVGKEIYDYWYAGATGIAYMAHAGGLIAGAGLVW 300
>gi|385333181|ref|YP_005887132.1| integral membrane protein [Marinobacter adhaerens HP15]
gi|311696331|gb|ADP99204.1| integral membrane protein [Marinobacter adhaerens HP15]
Length = 482
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYH 223
L+TLIT F H HI+ N+I L+ G ++ + LGP YL+ + GA+ G +
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLIFLFLLGFTVEKALGPGRYLIAYLVCGALSGLM------ 208
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV------- 276
F A+S+ S P +GASG+++ +M + + + + F +F+ V
Sbjct: 209 -FTAVSAG---------SYVPLVGASGSISGLMGMYVAIYGLQKIRFFYFLGVYFNYFRA 258
Query: 277 PAFLLGVFLIGKDMLRI-IEGNSNISGSAHLGG-AAVAALAW 316
PA L +GK++ G + I+ AH GG A A L W
Sbjct: 259 PAIALLPVWVGKEIYDYWYAGATGIAYMAHAGGLIAGAGLVW 300
>gi|418696708|ref|ZP_13257713.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409955501|gb|EKO14437.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 197
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + Y+ + S
Sbjct: 41 YTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFVLFYLGTILITS--------- 91
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
A+S ++ ++ R LGASG V ++ I P +LY F IP+P + V
Sbjct: 92 -AISWRKN----LNNPRYSTLGASGGVCGVLFATILFYPDLSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLVYTYFSSKSGAADGINHDAHLWGA 172
>gi|335433628|ref|ZP_08558447.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
gi|334898526|gb|EGM36631.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
Length = 325
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T TS FSH V HI N I ++FFG + +G L++A + + +V +
Sbjct: 150 TWFTSIFSHGSVSHIFLNGIVIFFFGRLVEDYVGSRDFTLLFLASGVLAGLGQIV---IM 206
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ S G+ LGASGA AI+ + LNP +Y F IPVP +LL + ++
Sbjct: 207 LVQSDMGGV----------LGASGAALAILGVLTILNPGLRVYLYFVIPVPIWLLTIGMV 256
Query: 287 GKDML-RIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
++L G ++ +AHL G A+ +R R
Sbjct: 257 AINVLGMFGTGGGGVANAAHLIGLAIGLAYGQHVRDR 293
>gi|442762601|gb|JAA73459.1| Putative integral membrane prote, partial [Ixodes ricinus]
Length = 342
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 107 FASFRYRWRSWLRQYGS-SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
+ +FR + W ++V Y +I N AVF++WR+ P+ N S +
Sbjct: 117 YGAFRQQLNQWYNGLSEGTKVAYAIIGVNVAVFLMWRV--PRLQPTMVRYFSSNPASRSV 174
Query: 166 H-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYH 223
++ S FSH + H+ +NM+ L F + G E + +Y+ AG + YL
Sbjct: 175 CLPMVLSTFSHSSLVHLCANMLVLTSFAPAAVALWGKEQFVAMYLSAGVLSSFASYL--- 231
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+++KR M +LGASGA+ A++ P A L F+P F G+
Sbjct: 232 --HKVATKRPAM---------SLGASGAILAVIAAMCVQYPDAQLAI-IFLPFFTFSAGM 279
Query: 284 FL---IGKDMLRIIEGNSNISGSAHLGGA 309
L + D+ I+ + +AHLGG+
Sbjct: 280 ALKAIVTMDVAGILLKWQLLDHAAHLGGS 308
>gi|189910395|ref|YP_001961950.1| rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775071|gb|ABZ93372.1| Rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
Length = 317
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH---IDVEHIVSNMI 186
++I N +F L A+ + + F ++ D LSG + + T F H + H+ NM
Sbjct: 23 ILILNCFIFFLQYFANQQ-LVFRFGLTPDFVLSGAVWQIFTYGFLHEVGLLPLHLFFNMY 81
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
G+Y G I +G LY +G +F +V A+L + Q + +++ + +
Sbjct: 82 GMYMLGNHIIPIIGKTKFTILYFVSQVGAGIF-VVLSAYLNVVLGGQ-VPLLESMTSQTI 139
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPV-------PAFLLGVFLIGKDMLRIIEGNSN 299
GASGA+ ++ L P A L F IPV A L+G FLI + GN +
Sbjct: 140 GASGAIFGLLALFGIFYPNAELLL-FIIPVKAKNAVWAALLIG-FLISQF------GNGS 191
Query: 300 ISGSAHLGGAAVAALA 315
IS + HLGGA A L
Sbjct: 192 ISSTCHLGGALTALLV 207
>gi|120435156|ref|YP_860842.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
gi|117577306|emb|CAL65775.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
Length = 299
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
++IT +F H + HI+SNM+ LYF G+ P LL Y G I G++ Y++ Y+ F
Sbjct: 67 SIITYSFLHSGIWHILSNMLILYFSGIYFLNYFSPRRLLNYYFLGVIIGALVYMLSYNLF 126
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A QG R+ +GAS V A+++ P + + + + FL
Sbjct: 127 PAF----QG-----TGRSYLMGASAGVMAVLIGIATHIPNMRVRLMIIGNIKFWWIAAFL 177
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ D+++I GN+ AHLGGAA+ L ++++
Sbjct: 178 LVLDIIQIPMGNAG-GHLAHLGGAALGYLYTNQLKK 212
>gi|431838821|gb|ELK00750.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Pteropus alecto]
Length = 466
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVS 183
V G+I AN VF LWR+ + M FT N S L + ++ S FSH + H+ +
Sbjct: 235 TVTGIIAANVFVFCLWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAA 291
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM L+ F SI LG E + +Y+ AG I V Y+ +++ R G
Sbjct: 292 NMYVLWSFSSSIVNILGQEQFMAMYLSAGVISSFVSYVC-----KVATGRYG-------- 338
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGKDMLRIIEGNSN 299
P+LGASGA+ ++ P+ L F+P+ F G +F +G
Sbjct: 339 -PSLGASGAIMTVLAAVCTKIPEGRLAI-IFLPMFTFTAGNVSIFTMGWKFF-------- 388
Query: 300 ISGSAHLGGA 309
+AHLGGA
Sbjct: 389 -DHAAHLGGA 397
>gi|260940587|ref|XP_002614593.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
gi|238851779|gb|EEQ41243.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
Length = 380
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
+ +V+ LI N A F+ W+ ++MA + DN S + +L+ SAFSH + H++
Sbjct: 183 NALVFTLIGLNVAGFLAWKSPVGSRYMARYGLLVKDNVAS--VFSLLGSAFSHQEGMHLL 240
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ LY FG ++ +G L +Y+ A+ S L R M +
Sbjct: 241 FNMLMLYSFGSTLCGYVGASNFLTMYLNSAVLSSFVSLALPIV-----TRSSMSIA---- 291
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLRIIEGNS 298
+LGASGA+ ++ +L P++ + F FF+P+P LG L + G
Sbjct: 292 --SLGASGAIFSVFGAFSYLFPRSAIAF-FFLPIPGGAWFAFLGTMAFNVAGLFMKWGRY 348
Query: 299 NISGSAHLGGA 309
+ +AHLGG
Sbjct: 349 DY--AAHLGGC 357
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII+N +++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPVTYILIISNVILWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHFNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
EHI+ NM+ LY FG + LG +L +Y+ I G+ L ++
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFN--------------- 260
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
+ T ++GASGA+ ++ IF + FD + + V LIG + S
Sbjct: 261 --TTTISVGASGAIFG-LIGSIFAILYLSKTFDKRVIGQLLIALVILIGLSLFM-----S 312
Query: 299 NISGSAHLGG 308
NI+ AHLGG
Sbjct: 313 NINVMAHLGG 322
>gi|294506674|ref|YP_003570732.1| rhomboid family protein [Salinibacter ruber M8]
gi|294343002|emb|CBH23780.1| Rhomboid family protein [Salinibacter ruber M8]
Length = 317
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL- 226
L+T +F H + HI NM+ L++ G R G + +Y+ A+GG++ L+
Sbjct: 71 LVTYSFMHTGLFHIGINMLLLFWVGREFERMHGSDQFWSVYLTTAVGGALICLLLSPIAP 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++S QG P LGAS +V ++ L P + FF VP + + +
Sbjct: 131 SISGGMQG-----GRSIPVLGASASVLGVLTTVAILYPYKQIRLLFFGVVPLLWVVIGFL 185
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
G D L + N + +AH GGA
Sbjct: 186 GIDALMALRPGGNTAVAAHWGGA 208
>gi|418528432|ref|ZP_13094382.1| Rhomboid-like protein [Comamonas testosteroni ATCC 11996]
gi|371454808|gb|EHN67810.1| Rhomboid-like protein [Comamonas testosteroni ATCC 11996]
Length = 500
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
TS F H H++ NM+ L+ FG ++ LG L Y+ G IG S+F L+++A +
Sbjct: 164 TSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVIGGIGASLFALMFYAGMGGY 223
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF-------FIPVPAFLLG 282
LGASGA++A+M + + + F + + PA ++
Sbjct: 224 G---------------LGASGAISALMAMYAVMYRMRRIRFFYMLLFYFNYASWPALIML 268
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAA-LAWARIR 320
+G ++L+ + G ++ AH GG A L W +R
Sbjct: 269 PVWMGVELLQHLLGGKQVAYMAHFGGLLTGALLMWGYMR 307
>gi|329956610|ref|ZP_08297183.1| peptidase, S54 family [Bacteroides clarus YIT 12056]
gi|328523982|gb|EGF51058.1| peptidase, S54 family [Bacteroides clarus YIT 12056]
Length = 227
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 23/214 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L+I N +F+ +A + N + L FL+G + LIT F H H+ NM
Sbjct: 11 LLIINVLMFLGTLVAQNYGIDLNKYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFA 70
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-----YLVYHAFLAMSSKRQGMWVVDP-- 240
++ FG + + GP+ L Y+A IG + Y+ Y L+ + V P
Sbjct: 71 VWMFGRILEQVWGPKRFLFYYLACGIGAGIIQELVQYIHYETVLSAYDSVNTGYSVIPME 130
Query: 241 ---SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+ +GASGAV AI+L L P L F F +P P F+IG ++ + G
Sbjct: 131 EYLNMMTTVGASGAVYAILLGFGMLFPNQPL-FIFPLPFP-IKAKYFVIGYALIELFSGL 188
Query: 298 SNISGS-----AHLGGAA---VAALAWARIRRRG 323
+N G AHLGG + + W R + RG
Sbjct: 189 ANNPGDNVAHFAHLGGMIFGFILIMYW-RKKNRG 221
>gi|183220277|ref|YP_001838273.1| putative rhomboid-like protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167778699|gb|ABZ96997.1| Putative rhomboid-like protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 307
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH---IDVEHIVSNMI 186
++I N +F L A+ + + F ++ D LSG + + T F H + H+ NM
Sbjct: 13 ILILNCFIFFLQYFANQQ-LVFRFGLTPDFVLSGAVWQIFTYGFLHEVGLLPLHLFFNMY 71
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
G+Y G I +G LY +G +F +V A+L + Q + +++ + +
Sbjct: 72 GMYMLGNHIIPIIGKTKFTILYFVSQVGAGIF-VVLSAYLNVVLGGQ-VPLLESMTSQTI 129
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPV-------PAFLLGVFLIGKDMLRIIEGNSN 299
GASGA+ ++ L P A L F IPV A L+G FLI + GN +
Sbjct: 130 GASGAIFGLLALFGIFYPNAELLL-FIIPVKAKNAVWAALLIG-FLISQF------GNGS 181
Query: 300 ISGSAHLGGAAVAALA 315
IS + HLGGA A L
Sbjct: 182 ISSTCHLGGALTALLV 197
>gi|384253784|gb|EIE27258.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 199
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+AF H +H+ SN+ LY FG + GP L Y+ ++G S +F A
Sbjct: 49 LTAAFCHASWDHLSSNLFMLYTFGKIVEEEEGPGALWFTYIVCSVGASA-----ASFFA- 102
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
DP+ T +LGASGAV + + + L L F+F V +LG F++ +
Sbjct: 103 ----------DPAATYSLGASGAVFGLFAVAVLLK----LRFNFQKLVECLVLGQFVVKQ 148
Query: 289 DMLRIIE--------GNSNISGSAHLGGA 309
+ ++ G S + AHL GA
Sbjct: 149 VLQEVVSAQNGGAMIGASKVGHIAHLAGA 177
>gi|237718984|ref|ZP_04549465.1| rhomboid family protein [Bacteroides sp. 2_2_4]
gi|229451762|gb|EEO57553.1| rhomboid family protein [Bacteroides sp. 2_2_4]
Length = 301
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVTGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
IG D+L I N+ AHLGG A+A L +A +G
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|448391556|ref|ZP_21566702.1| rhomboid family protein [Haloterrigena salina JCM 13891]
gi|445665877|gb|ELZ18552.1| rhomboid family protein [Haloterrigena salina JCM 13891]
Length = 295
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T +TS F+H + HIV N I ++FFG + R +G L++ +GA+ G
Sbjct: 121 TWVTSVFAHGGLYHIVGNSIVIFFFGPLVERYVGSRNFAILFLVSGALAG---------L 171
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL-GVF 284
++ + + + P LGASGA AI+ + LNP +Y F +PVP ++L G +
Sbjct: 172 SQIAIQIVELNTITPLTGGVLGASGAALAILGVLTILNPDLKVYLYFILPVPIWVLAGGY 231
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
I G N++ AHL G A+ LA+ + ++
Sbjct: 232 AIFSIFFIGTGGGGNVAHMAHLVGLAI-GLAYGQYIKQ 268
>gi|42522625|ref|NP_968005.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|426403007|ref|YP_007021978.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
gi|39575157|emb|CAE78998.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|425859675|gb|AFY00711.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 244
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL----HTL--ITSAFSH-I 176
+ VV L+I N A++ ++++ F+ FT S+ G++ H T F H +
Sbjct: 9 TPVVKWLLIINVAIWFVFQVIMEGFLRVPFT-SIFGLFPGKVLFDFHIWQPFTYMFLHSM 67
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
V HI+ NM+ L+FFG + + G ++ L Y+ +G ++ Y + A+ + Q
Sbjct: 68 QVTHILFNMLMLWFFGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALITGSQTGL 127
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP----AFLLGVFLIGKDMLR 292
+V P +GASGAV ++L + + +YF P+ L+G+ + M
Sbjct: 128 IV-----PVVGASGAVFGLLLAQGMIFGERIVYFFMLFPMKTKYFVALMGLVQLASLMTS 182
Query: 293 IIEGNSNISGSAHLGG 308
+ G ++ AHLGG
Sbjct: 183 SVAGG-EVAYLAHLGG 197
>gi|417765657|ref|ZP_12413614.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417786203|ref|ZP_12433899.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|418669212|ref|ZP_13230602.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418701952|ref|ZP_13262870.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418705885|ref|ZP_13266738.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|421126800|ref|ZP_15587025.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133053|ref|ZP_15593209.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|400352016|gb|EJP04223.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|409950748|gb|EKO05271.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|410022807|gb|EKO89576.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410435655|gb|EKP84786.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410755047|gb|EKR16686.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410759084|gb|EKR25303.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410764414|gb|EKR35128.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|455789781|gb|EMF41688.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 197
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFILFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + D LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---DNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLIYTYFSSKSGAADGINHDAHLWGA 172
>gi|423291417|ref|ZP_17270265.1| hypothetical protein HMPREF1069_05308 [Bacteroides ovatus
CL02T12C04]
gi|392663417|gb|EIY56967.1| hypothetical protein HMPREF1069_05308 [Bacteroides ovatus
CL02T12C04]
Length = 301
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVTGATLV--------GASASVLAIVAATAYREPDYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|255037557|ref|YP_003088178.1| rhomboid family protein [Dyadobacter fermentans DSM 18053]
gi|254950313|gb|ACT95013.1| Rhomboid family protein [Dyadobacter fermentans DSM 18053]
Length = 304
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 119 RQYGSSE-VVYGLIIANTAVFM---LWRIADPKFMANNFTISLDNFLS---------GRL 165
R++ SE + +I+ NTAVF+ L +I ++N + N L +
Sbjct: 10 REFAKSENALVKIILVNTAVFLILLLMKIVLTLSQSSNVYALVINMLQLPAATQEFIYKP 69
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TLIT F+H D+ HI+ NM+ LY+FG + LG + ++ LY+ G I G + Y+V +
Sbjct: 70 WTLITYFFTHDDIFHILFNMLFLYWFGKLVDEYLGAKRVIALYLLGGIAGGLIYIVLYNL 129
Query: 226 LA-MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
L + +G ++ S A GA L P T F PV + +F
Sbjct: 130 LPYFQAHIEGSRMLGASAAAFSVAVGAST--------LLPNYTFNLIFLGPVRIKFIALF 181
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGA 309
I + + + N+ AHLGGA
Sbjct: 182 YIILSLAQTVGPNAG-GNLAHLGGA 205
>gi|336404295|ref|ZP_08584993.1| hypothetical protein HMPREF0127_02306 [Bacteroides sp. 1_1_30]
gi|295085557|emb|CBK67080.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
gi|335943623|gb|EGN05462.1| hypothetical protein HMPREF0127_02306 [Bacteroides sp. 1_1_30]
Length = 301
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVAGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|160884104|ref|ZP_02065107.1| hypothetical protein BACOVA_02080 [Bacteroides ovatus ATCC 8483]
gi|293368712|ref|ZP_06615317.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|336412652|ref|ZP_08593005.1| hypothetical protein HMPREF1017_00113 [Bacteroides ovatus
3_8_47FAA]
gi|423293420|ref|ZP_17271547.1| hypothetical protein HMPREF1070_00212 [Bacteroides ovatus
CL03T12C18]
gi|156110446|gb|EDO12191.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|292636177|gb|EFF54664.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|335942698|gb|EGN04540.1| hypothetical protein HMPREF1017_00113 [Bacteroides ovatus
3_8_47FAA]
gi|392678363|gb|EIY71771.1| hypothetical protein HMPREF1070_00212 [Bacteroides ovatus
CL03T12C18]
Length = 301
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVAGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|398831080|ref|ZP_10589259.1| putative membrane protein [Phyllobacterium sp. YR531]
gi|398212648|gb|EJM99250.1| putative membrane protein [Phyllobacterium sp. YR531]
Length = 253
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT AF H D+ H+ NM+ L+ FG +I LG L Y+ A G+ + V
Sbjct: 73 TYITYAFLHADIFHLGGNMLFLWVFGDNIEDALGHVKFLIFYLLCAAAGAFLHGV----- 127
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VPAFLLG 282
++ S+ P +GASGA+ I+ + L+P+ ++ F IP +PA
Sbjct: 128 ----------ILPDSQAPLIGASGAIAGIVAAYLLLHPRVKVWVLAFGRIPLRIPAIYPL 177
Query: 283 VFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRR 322
+ + + ++ G+ +S AH+GG AL ++RR
Sbjct: 178 ILWVAVQFVMLLWGGDQQVSWPAHVGGIIAGALLIVVLKRR 218
>gi|448561159|ref|ZP_21634511.1| rhomboid-like intramembrane serine protease [Haloferax prahovense
DSM 18310]
gi|445721391|gb|ELZ73059.1| rhomboid-like intramembrane serine protease [Haloferax prahovense
DSM 18310]
Length = 299
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 154 TISLDNFLSGRLH-----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
++S++ F +H T +TS F+H HIV N I L+FFG + R +G L+
Sbjct: 111 SLSINAFYLTSIHPEYVWTWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF 170
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
LV ++ M + S + +GASGA+ A++ + LNP +
Sbjct: 171 -----------LVSGMLAGLAQVGSSMLLSPGSVSAVVGASGAIMAVLGVLTVLNPGLKI 219
Query: 269 YFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
Y F IPVP +L + G + + +++ I+ AHL G + R++ +
Sbjct: 220 YLYFIIPVPLWLFTLGFAGISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGQ 274
>gi|389805798|ref|ZP_10202945.1| hypothetical protein UUA_01125 [Rhodanobacter thiooxydans LCS2]
gi|388447039|gb|EIM03053.1| hypothetical protein UUA_01125 [Rhodanobacter thiooxydans LCS2]
Length = 202
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
H L+T H D H++ NMI L+FFG +++ + A +G F L Y
Sbjct: 42 HRLVTYGLVHADFGHLLFNMITLFFFGR----------VMESFFASRMGPFGFALFYIGG 91
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
L +S + +LGASGAV+A++ I L P + + IP+PA + V
Sbjct: 92 LVVSILPTYLKNRSNPNYRSLGASGAVSAVLFAFILLAPWSRI-IVLVIPMPAIVYAVLY 150
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
G + G N++ SAHL GAA +
Sbjct: 151 TGYSIYMDRRGQGNVNHSAHLWGAAYGVI 179
>gi|297564876|ref|YP_003683848.1| rhomboid family protein [Meiothermus silvanus DSM 9946]
gi|296849325|gb|ADH62340.1| Rhomboid family protein [Meiothermus silvanus DSM 9946]
Length = 211
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 30/214 (14%)
Query: 123 SSEVVYGLIIANTAVFMLWRI---ADPKFMANNFTISLDNFL---SGRLHTLITSAFSHI 176
+ VV L++AN AVF+ W+ DP + F + + +S F H
Sbjct: 13 TPYVVRLLVLANLAVFV-WQFFFFPDPDQAILQYGFIPSRFWADPTSEWPRIFSSMFMHG 71
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
+ HI+ NM L+ FG +I LG L Y+ G + ++ QG+
Sbjct: 72 GLAHILGNMWFLWVFGDNIEDQLGHFRFLVFYLLGGVAAAL--------------AQGL- 116
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKAT---LYFDFFIPVPAFLLGVFLIGKDMLRI 293
V + P +GASGA++A++ I L P+AT L +PVPAF+ + +L+
Sbjct: 117 VFASTDVPMVGASGAISAVLGAYIVLFPRATVLSLVGWIPLPVPAFIYLGYWALIQLLQS 176
Query: 294 IEGNSNISGSAHLGG-----AAVAALAWARIRRR 322
G I+ AH+GG V A A ++ RR
Sbjct: 177 FAGVEGIAFWAHIGGFIFGTVLVRAFALPQVSRR 210
>gi|281421497|ref|ZP_06252496.1| rhomboid family protein [Prevotella copri DSM 18205]
gi|281404569|gb|EFB35249.1| rhomboid family protein [Prevotella copri DSM 18205]
Length = 312
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTIS----LDNFLSGRLH--TLITSAFSHIDVE 179
V L+I N F+ + D K M ++ L FL+ H L+T F H +
Sbjct: 7 VTKNLLIVNVVAFLACMLMD-KSMGGGSGLTDMFGLHFFLASDFHIYQLVTYMFMHGGFQ 65
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV--YHAFLAMSSKRQGMWV 237
HI+ NM L+ FG + R GP+ L Y+ +G +F Y ++A
Sbjct: 66 HILFNMFALWMFGCVVERVWGPKKFLFYYIVCGVGAGLFQEAAQYITYVAKDMAAYDYVS 125
Query: 238 VDPSRT---------PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
V+ +R +GASGA+ AI+L + P L F F +PVP F+IG
Sbjct: 126 VNGARITMEQYLNLWTTVGASGAIYAILLAFGMIYPNERL-FIFPLPVP-IKAKFFVIGY 183
Query: 289 DMLRIIE----GNSNISGSAHLGG 308
++ ++ + ++ AHLGG
Sbjct: 184 AVIELVSTFSLSDDGVAHIAHLGG 207
>gi|448582210|ref|ZP_21645714.1| rhomboid-like intramembrane serine protease [Haloferax gibbonsii
ATCC 33959]
gi|445731858|gb|ELZ83441.1| rhomboid-like intramembrane serine protease [Haloferax gibbonsii
ATCC 33959]
Length = 299
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSVSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + R++ +
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQRVKGQ 274
>gi|448353180|ref|ZP_21541957.1| rhomboid family protein [Natrialba hulunbeirensis JCM 10989]
gi|445640757|gb|ELY93843.1| rhomboid family protein [Natrialba hulunbeirensis JCM 10989]
Length = 305
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAF 225
T +TS F+H D+ HI N I ++FFG + R +G ++L+ ++GA+ G
Sbjct: 123 TWVTSIFAHGDIIHIAFNAIVIFFFGPLVERYVGSRDFLILFLVSGAVAG---------- 172
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L+ + + V P LGASGA AIM + LNP T+Y +PV ++L V
Sbjct: 173 LSQVAIQIYQGPVLPGTGGVLGASGAALAIMGVLTILNPNLTVYLYMIVPVRLWMLAV 230
>gi|375256270|ref|YP_005015437.1| peptidase, S54 family [Tannerella forsythia ATCC 43037]
gi|363407619|gb|AEW21305.1| peptidase, S54 family [Tannerella forsythia ATCC 43037]
Length = 234
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 164 RLHTLITSAFSHIDVE---HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV--- 217
+ + LIT F H D HI NM ++ FG + GP+ L Y+ IG ++
Sbjct: 54 KFYQLITYMFMH-DTHSFGHIFFNMFAVFMFGRILEVAWGPKRFLTFYIVTGIGAALVQE 112
Query: 218 ---FYLVYH-AFLAMSSKRQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
FY ++ A L S Q + +DP S +GASGAV I+L L P A LYF
Sbjct: 113 LTWFYRIHSLAVLNGISISQQI-AMDPGISILVTIGASGAVFGILLAFGMLFPNAPLYF- 170
Query: 272 FFIPVPAFLLGVFLIGKDMLRIIEG-----NSNISGSAHLGG 308
FIP+P F+IG ++ G N N++ AHLGG
Sbjct: 171 MFIPIPI-KAKYFVIGYGLIEFFMGVSNCSNDNVAHFAHLGG 211
>gi|91772866|ref|YP_565558.1| rhomboid-like protein [Methanococcoides burtonii DSM 6242]
gi|91711881|gb|ABE51808.1| Rhomboid family protein with AN1-like zinc finger domain
[Methanococcoides burtonii DSM 6242]
Length = 279
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLIT F H H+ NM+ L+FFG + + +G + L +Y I ++
Sbjct: 129 TLITHMFLHASFGHLFFNMLVLFFFGRELEKRIGKDLFLYVYFISGIIAAL--------- 179
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP---AFLLGV 283
G + + P +GASGA+ + L P +Y +FIP+ A LL V
Sbjct: 180 -------GYSITSANNVPIIGASGAIMGVFAALTILAPNMEVYV-YFIPMKIKYALLLFV 231
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
L D + ++ N ++ +AHL G V + +I++
Sbjct: 232 LL---DFM-LLNANDMVAHTAHLSGVLVGVIMGYKIKK 265
>gi|448346155|ref|ZP_21535043.1| rhomboid family protein [Natrinema altunense JCM 12890]
gi|445633165|gb|ELY86365.1| rhomboid family protein [Natrinema altunense JCM 12890]
Length = 304
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T TS F+H + HI N I L+FFG + R +G L++ + G + L A
Sbjct: 121 TWFTSIFAHGGLYHIAGNSIVLFFFGPLVERYVGSRKFAILFL---VSGVLAGLGQIAIQ 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVF 284
+ + VV P +GASGA AIM + LNP +Y F +PVP +LL G
Sbjct: 178 ILQTP-----VVTPLTPGVVGASGAALAIMGVLTILNPGLKVYLYFILPVPIWLLTAGYA 232
Query: 285 LIGKDMLR-IIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+I L + G S I+ AHL G V LA+ + ++
Sbjct: 233 VISITFLSGAVGGGSGIAHMAHLVG-LVIGLAYGQYVKQ 270
>gi|386321444|ref|YP_006017606.1| hypothetical protein RIA_1146 [Riemerella anatipestifer RA-GD]
gi|325335987|gb|ADZ12261.1| Uncharacterized membrane protein [Riemerella anatipestifer RA-GD]
Length = 245
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 97/236 (41%), Gaps = 48/236 (20%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 13 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFPHLLFNMI 68
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ---------- 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 69 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQQGVDLASVFR 128
Query: 234 GMWVVDPSR--------------------TPALGASGAVNAIMLLDIFLNPKATLYFDFF 273
G + +PS TP +GASGA+ ++ P A + F
Sbjct: 129 GANLNNPSLNIRAIFGRSDEVAQLQQFLITPMVGASGAIFGVLAAFAVTYPNAGIMI-LF 187
Query: 274 IPVP---AFLLGVFLIGKDMLRIIE-GNSNISGSAHLGGAAVAAL---AWARIRRR 322
IP P L + ++G L + N++ AHLGGA V + W+R R R
Sbjct: 188 IPFPIKAKILFPIIIVGSIYLGFTQMAGDNVAHFAHLGGALVGYILIKMWSRNRFR 243
>gi|299144761|ref|ZP_07037829.1| rhomboid family protein [Bacteroides sp. 3_1_23]
gi|298515252|gb|EFI39133.1| rhomboid family protein [Bacteroides sp. 3_1_23]
Length = 296
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVAGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|313206565|ref|YP_004045742.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|383485869|ref|YP_005394781.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|416110158|ref|ZP_11591877.1| Rhomboid family protein [Riemerella anatipestifer RA-YM]
gi|442314232|ref|YP_007355535.1| putative membrane protein [Riemerella anatipestifer RA-CH-2]
gi|312445881|gb|ADQ82236.1| Rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|315023439|gb|EFT36447.1| Rhomboid family protein [Riemerella anatipestifer RA-YM]
gi|380460554|gb|AFD56238.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|441483155|gb|AGC39841.1| putative membrane protein [Riemerella anatipestifer RA-CH-2]
Length = 244
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 97/236 (41%), Gaps = 48/236 (20%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 12 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFPHLLFNMI 67
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ---------- 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 68 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQQGVDLASVFR 127
Query: 234 GMWVVDPSR--------------------TPALGASGAVNAIMLLDIFLNPKATLYFDFF 273
G + +PS TP +GASGA+ ++ P A + F
Sbjct: 128 GANLNNPSLNIRAIFGRSDEVAQLQQFLITPMVGASGAIFGVLAAFAVTYPNAGIMI-LF 186
Query: 274 IPVP---AFLLGVFLIGKDMLRIIE-GNSNISGSAHLGGAAVAAL---AWARIRRR 322
IP P L + ++G L + N++ AHLGGA V + W+R R R
Sbjct: 187 IPFPIKAKILFPIIIVGSIYLGFTQMAGDNVAHFAHLGGALVGYILIKMWSRNRFR 242
>gi|259488294|tpe|CBF87629.1| TPA: rhomboid family protein, putative (AFU_orthologue;
AFUA_1G09150) [Aspergillus nidulans FGSC A4]
Length = 571
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N +F+LWR P + + N + IS+ + R+ L+ + F
Sbjct: 350 RMWPSLPPAAATVSAIIGLNVGIFVLWRAWPPAWRLLNRYFISVAAY--PRVFGLVGNVF 407
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ NM L+FFG + +G L LY+A + GS L H R
Sbjct: 408 SHQHLMHLGINMSVLWFFGTKLHDEIGRGNFLALYIASGVFGSFASLTMHVL------RN 461
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-------IPVPAFLLGVFLI 286
+++ +LGAS A+ ++ L+P F + PA++ L+
Sbjct: 462 SLFLT------SLGASSAIAGVLAASALLHPGDKWTIAFLPREWQESLSAPAWMFFAGLV 515
Query: 287 GKDMLRIIEGN--SNISGSAHLGGAAVAAL 314
D++ + + AHLGG A+
Sbjct: 516 TFDIVGAVMKRHVPKLDYYAHLGGYLTGAV 545
>gi|333377250|ref|ZP_08468986.1| hypothetical protein HMPREF9456_00581 [Dysgonomonas mossii DSM
22836]
gi|332886463|gb|EGK06707.1| hypothetical protein HMPREF9456_00581 [Dysgonomonas mossii DSM
22836]
Length = 220
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TSA H D H++ NM+ LYFF I + G L +Y IGG + L H
Sbjct: 51 LLTSATLHGDYMHLLFNMMTLYFFSDIITYSFGVWIYLAIYFLSIIGGGLLSLFIH---- 106
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--VPAFLLGVFL 285
+++ A+GASG V I+ I + P L F FFIP +P ++ G+
Sbjct: 107 ---RKE-------YYYSAIGASGGVVGILFAAIAVYPTMPLRF-FFIPIDIPGWIFGLGY 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ + +++ NI AH+GGA V +
Sbjct: 156 LAFSIYGMLKKVGNIGHDAHMGGAIVGIVV 185
>gi|221069925|ref|ZP_03546030.1| Rhomboid family protein [Comamonas testosteroni KF-1]
gi|220714948|gb|EED70316.1| Rhomboid family protein [Comamonas testosteroni KF-1]
Length = 500
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
++IS N + TS F H H++ NM+ L+ FG ++ LG L Y+
Sbjct: 145 ERWSISYANGAGWQPLQAFTSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVI 204
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
G IG S+F L+++A + LGASGA++A+M + + + F
Sbjct: 205 GGIGASLFALMFYAGMGGYG---------------LGASGAISALMAMYAVMYRMRRIRF 249
Query: 271 DF-------FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
+ + PA ++ +G ++L+ + G ++ AH GG
Sbjct: 250 FYMLLFYFNYASWPALIMLPVWMGVELLQHLLGGKQVAYMAHFGG 294
>gi|417762000|ref|ZP_12409996.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417769446|ref|ZP_12417362.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417775235|ref|ZP_12423091.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418673108|ref|ZP_13234433.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|418680768|ref|ZP_13242007.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418690065|ref|ZP_13251183.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418716234|ref|ZP_13276248.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|418726000|ref|ZP_13284612.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|421123434|ref|ZP_15583714.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|400327490|gb|EJO79740.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400360788|gb|EJP16758.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|409942189|gb|EKN87810.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|409948596|gb|EKN98584.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409960781|gb|EKO24534.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410343485|gb|EKO94716.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410574930|gb|EKQ37956.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410579891|gb|EKQ47727.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|410787917|gb|EKR81646.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455669206|gb|EMF34365.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 197
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFVLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + D LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---DNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLIYTYFSSKSGAADGINHDAHLWGA 172
>gi|448369650|ref|ZP_21556202.1| rhomboid family protein [Natrialba aegyptia DSM 13077]
gi|445650825|gb|ELZ03741.1| rhomboid family protein [Natrialba aegyptia DSM 13077]
Length = 305
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T +TS F+H + HIV N I ++FFG + R +G L++ +GA+ G
Sbjct: 127 TWVTSVFAHGGILHIVFNSIVIFFFGPLVERYVGSRKFAALFIVSGALAG---------- 176
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
L+ + + V P LGASGA AIM + LNPK T+Y PVP ++L
Sbjct: 177 LSQVAIQIYQGPVIPGFGGVLGASGAALAIMGVLTVLNPKLTVYLYMIFPVPIWVL---T 233
Query: 286 IGKDMLRI----IEGNSNISGSAHLGGAAVAALAWARIRRR 322
G ++ I G +I+ +AHL G V LA+ +R
Sbjct: 234 AGTAVISIFFIGTGGGGDIAHAAHLVGLLV-GLAYGEYVKR 273
>gi|392391024|ref|YP_006427627.1| hypothetical protein Ornrh_1677 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522102|gb|AFL97833.1| putative membrane protein [Ornithobacterium rhinotracheale DSM
15997]
Length = 237
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
DNF R +++ F H D+ H+ NM+ L+ FG ++ LGP+ + LY A A+G V
Sbjct: 46 DNF---RSFQILSHMFMHGDLTHLFFNMLALFMFGSTVEMVLGPKRYVILYFASALGAYV 102
Query: 218 F-----YLVYHAFLA-----------MSSKRQGMWVVDPSR------TPALGASGAVNAI 255
YL +A +S+ + M + TP +GASGA+ +
Sbjct: 103 LFNATNYLEAQQLIAAADLSPQQVALLSTLKPMMGIPGLETLSAIYSTPMVGASGAIFGV 162
Query: 256 MLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDMLRIIEGN--SNISGSAHLGGAAVA 312
++ L P A L F IP+ A + + +++ I+ N NI+ AH+GGA +
Sbjct: 163 LIAFGMLFPNAVLMLIFPPIPIKAKYIIPLYVLLELVLAIQSNPGDNIAHYAHIGGAIIG 222
>gi|254459891|ref|ZP_05073307.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium
HTCC2083]
gi|206676480|gb|EDZ40967.1| peptidase, S54 (rhomboid) family [Rhodobacteraceae bacterium
HTCC2083]
Length = 255
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H + HI NM+ L+ FG ++ + G IG +FYLV F
Sbjct: 70 YTLVTSQFLHGGIMHIGGNMLFLWIFGDNMEDEM-----------GHIGFLIFYLVSGVF 118
Query: 226 LAMSSKRQGMWVVDPSRT-PALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPV 276
A++ W+V+PS T +GASGA+ +M + L PKA ++F F P+
Sbjct: 119 AALAQ-----WIVEPSSTIVTIGASGAIAGVMGGYLLLFPKAKVDILLILIVFFRIF-PI 172
Query: 277 PAF-LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
PA+ +LGV+ L+I GN +S LGG A A A
Sbjct: 173 PAWVMLGVWF----ALQI--GNGVVS-DPDLGGVAYWAHA 205
>gi|389610057|dbj|BAM18640.1| rhomboid-7 [Papilio xuthus]
Length = 347
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITS 171
+W + LR S +V Y + AN VF WRI FM F + + + ++ S
Sbjct: 132 KWWNSLRP--SDKVFYPIFAANLLVFGAWRIRSLHPFMIKYFCSNPGG--AAKCIPMVLS 187
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
FSH H+ +NM LY F + +LG E + +Y++ + S ++Y L
Sbjct: 188 TFSHYSPFHLAANMYVLYSFMPAAVASLGKEQFVAMYLSAGVISSFASVLYKVLL----N 243
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGK 288
+ G+ +LGASGA+ +++ P L F+P+ F G ++
Sbjct: 244 QPGL---------SLGASGAIMSVLSFVCLQYPDTRLSI-IFLPMYTFAAGSAIKAIMAV 293
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWA 317
D+ +I G +AHLGG A+ +AW
Sbjct: 294 DLAGVILGWRFFDHAAHLGG-ALFGIAWC 321
>gi|68468321|ref|XP_721720.1| potential Rhomboid family membrane protein [Candida albicans
SC5314]
gi|46443652|gb|EAL02932.1| potential Rhomboid family membrane protein [Candida albicans
SC5314]
gi|238880628|gb|EEQ44266.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 327
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+++ LI N AVF++WRI ++ + I + L TL+ SAFSH H N
Sbjct: 127 SLLWSLIGINGAVFLMWRIPRLQWFTMKYGILFKDNLQSPW-TLLGSAFSHQSFAHFFIN 185
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M+ FG ++ LG +Y+ A+ S L FL S
Sbjct: 186 MLAFQSFGSTLVAFLGVSNFTIMYLNSAVISSFASLAIPMFLGSSLS-----------VA 234
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLRIIEGNSNI 300
+LGASGA+ ++ + FL P + + FFIP+P LG L + G +
Sbjct: 235 SLGASGAIFSVFGVFSFLFPASPVGL-FFIPIPGGAWMLFLGTTLWNAAGTVLRWGTFDY 293
Query: 301 SGSAHLGGAAVA 312
+AHLGG+ V
Sbjct: 294 --AAHLGGSIVG 303
>gi|17549219|ref|NP_522559.1| hypothetical protein RS02331 [Ralstonia solanacearum GMI1000]
gi|17431471|emb|CAD18149.1| putative uncharacterized membrane transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 197
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + R LG LY+A + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAA---FTQMAVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVPAFLLG-VFL 285
+S+ G P +GASG V ++L L P + L IP+PA+L V+
Sbjct: 105 LSTLPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLIPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L I +S I+ AHLGG A L W +R R
Sbjct: 156 LVELTLGISGSHSGIAHFAHLGGMAGSGVLLWRWLRGR 193
>gi|398808520|ref|ZP_10567383.1| putative membrane protein [Variovorax sp. CF313]
gi|398087552|gb|EJL78138.1| putative membrane protein [Variovorax sp. CF313]
Length = 471
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT+AF H H++ NM+ L+ FG S+ LG L Y+ GA+G S
Sbjct: 135 TWITAAFLHGSTGHLLGNMLFLFLFGFSVELALGRGTYLSFYLLGAVGASAL-------- 186
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIM-LLDIFLNPKA-----TLYFDF-FIPVPAF 279
W LGASGA++A+M + + K L+F F ++ PA
Sbjct: 187 -------AGWAYAGKDGYGLGASGAISALMGMYAVMYRLKRIRFFYQLFFYFNYVTAPAL 239
Query: 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
LL I ++++ G I+ AHLGG
Sbjct: 240 LLLPAWIVNELMQHWLGGQGIAYMAHLGG 268
>gi|418711617|ref|ZP_13272374.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|421117141|ref|ZP_15577510.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410011270|gb|EKO69392.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410768103|gb|EKR43359.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|456972660|gb|EMG13004.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 197
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFVLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + D LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---DNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLIYTYFSSKSGAADGINHDAHLWGA 172
>gi|262198763|ref|YP_003269972.1| rhomboid family protein [Haliangium ochraceum DSM 14365]
gi|262082110|gb|ACY18079.1| Rhomboid family protein [Haliangium ochraceum DSM 14365]
Length = 371
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 21/149 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++S F H D+ H++ NM+ L+ +G ++ LGP + +Y+A GG+V L Y AFL
Sbjct: 61 TLLSSMFLHADIWHLLGNMLYLWIYGDNVEHRLGPLGYIGVYLA---GGAVATLSYAAFL 117
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-----TLYFDFFIPVPAFLL 281
+ + P +GASGA++A++ PK L+ + I P +L
Sbjct: 118 SPALM----------ELPLVGASGAISALLGFYFVWFPKNRVRVFILFRVWRIRAP-IVL 166
Query: 282 GVFLIGKDMLR--IIEGNSNISGSAHLGG 308
G++++ ++L I + ++ AHLGG
Sbjct: 167 GIYVLWDNVLPLLITASSDGVAYGAHLGG 195
>gi|21483546|gb|AAM52748.1| RH66343p [Drosophila melanogaster]
Length = 380
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
+++ N F +WR+ P + T N + + + S FSH H+ +NM +
Sbjct: 180 ILLCNLVAFAMWRV--PALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVM 237
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F + +LG E L +Y++ + S+ ++Y A ++ + GM +LGA
Sbjct: 238 HSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKA----ATSQAGM---------SLGA 284
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSAH 305
SGA+ ++ P L F+P F G L+G D ++ G +AH
Sbjct: 285 SGAIMTLLAYVCTQYPDTQLSI-LFLPALTFSAGAGIKVLMGIDFAGVVMGWKFFDHAAH 343
Query: 306 LGGA 309
LGGA
Sbjct: 344 LGGA 347
>gi|83815079|ref|YP_444821.1| S54 family peptidase [Salinibacter ruber DSM 13855]
gi|83756473|gb|ABC44586.1| peptidase, S54 (rhomboid) family, putative [Salinibacter ruber DSM
13855]
Length = 282
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL- 226
L+T +F H + HI NM+ L++ G R G + +Y+ A+GG++ L+
Sbjct: 36 LVTYSFMHTGLFHIGINMLLLFWVGREFERMHGSDQFWSVYLTTAVGGALICLLLSPIAP 95
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++S QG P LGAS +V ++ L P + FF VP + + +
Sbjct: 96 SISGGMQG-----GRSIPVLGASASVLGVLTTVAILYPYKQIRLLFFGVVPLLWVVIGFL 150
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
G D L + N + +AH GGA
Sbjct: 151 GIDALMALRPGGNTAVAAHWGGA 173
>gi|389846157|ref|YP_006348396.1| rhomboid family protein/GlpG-like protein [Haloferax mediterranei
ATCC 33500]
gi|448616224|ref|ZP_21664934.1| rhomboid family protein/GlpG-like protein [Haloferax mediterranei
ATCC 33500]
gi|388243463|gb|AFK18409.1| rhomboid family protein/GlpG-like protein [Haloferax mediterranei
ATCC 33500]
gi|445750879|gb|EMA02316.1| rhomboid family protein/GlpG-like protein [Haloferax mediterranei
ATCC 33500]
Length = 295
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I LYFFG + R +G L +LV
Sbjct: 128 TWVTSIFAHGGFYHIVGNSIVLYFFGPLVERYVGSRKFAAL-----------FLVSGMLA 176
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + T +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 177 GLAQVGSSMLLSPGIPTSVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 236
Query: 287 GKDMLRIIEGNS--NISGSAHLGGAAVAALAWARIRRR 322
G + + S I+ AHL G + R++ +
Sbjct: 237 GISVFFFLSPGSGGGIAHFAHLIGLVIGLAYGQRVKGK 274
>gi|359442292|ref|ZP_09232162.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
gi|358035903|dbj|GAA68411.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
Length = 361
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADPKF--MANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
V GLI+ NT +F L+ + F + +NF ++ + G L T++T F H + H+V
Sbjct: 154 VTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMHLV 213
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-S 241
NM LY G ++ LG + L Y+A + S ++V P S
Sbjct: 214 GNMYFLYIVGDNLEDVLGHKRFLLWYLACGLLASF----------------ASYIVSPMS 257
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLIGKDMLRIIEGNS 298
P +GASGA+ + + + A+L F F I + A +G ++ + G
Sbjct: 258 TIPGVGASGAIAGLFGMYLMWFRHASLTFMFIIYQKKLSAVWFFAIWLGFNIFGAVTGPD 317
Query: 299 NISGSAHLGG 308
I AH+GG
Sbjct: 318 GIDYGAHIGG 327
>gi|343084832|ref|YP_004774127.1| rhomboid family protein [Cyclobacterium marinum DSM 745]
gi|342353366|gb|AEL25896.1| Rhomboid family protein [Cyclobacterium marinum DSM 745]
Length = 209
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 141 WRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL- 199
W+ +P+F+ N G +TS F H D H++ NM YFFG + L
Sbjct: 21 WK--NPEFINKNLFTPYIIKTDGAYGRFLTSGFIHKDGTHLLFNMFTFYFFGNVVESYLN 78
Query: 200 ---GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS--KRQGMWVVDPSRTPALGASGAVNA 254
GPE G + +FYL+ + + K Q +PS ALGASG +A
Sbjct: 79 YAFGPE-------LGIVAFVLFYLIAIIIADIPTYLKEQN----NPSYH-ALGASGGTSA 126
Query: 255 IMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ I L P + + +P F+LG+ +G + G NI+ AH GA L
Sbjct: 127 TVFASIILMPLSDICIFGIFCLPGFILGLLFLGYAFYKGRAGGDNINHDAHFYGAVFGIL 186
Query: 315 AWARIRRR 322
I
Sbjct: 187 VIVLISPE 194
>gi|86133301|ref|ZP_01051883.1| rhomboid family protein [Polaribacter sp. MED152]
gi|85820164|gb|EAQ41311.1| rhomboid family protein [Polaribacter sp. MED152]
Length = 285
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD--PKFMAN--NFTI---SLDNFLSGRLH---TLI 169
+Y +V LI N AVF++ + + AN NF + +LDN ++ TL+
Sbjct: 10 RYKQGNIVEKLIYINIAVFVITILINVLQGLYANSTNFIVNWFALDNSINALFTKPWTLL 69
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
+ F H D HI+ N+I +Y+ G + LL Y+ G G V YL + +
Sbjct: 70 SYGFLHADFLHILMNLIVIYYIGNLFLEYFTQKQLLTFYLLGTFFGGVLYLFSQNYFPL- 128
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
+ + +GAS ++AI + P + F V + L F IG D
Sbjct: 129 --------FEGDNSVLVGASAGISAIFIGIATYIPNYQIKLRFIGFVKLWHLAAFWIGLD 180
Query: 290 MLRIIEGNSNISGSAHLGGA 309
++ +I GN+ AHLGGA
Sbjct: 181 IISLI-GNNAGGHFAHLGGA 199
>gi|17231423|ref|NP_487971.1| hypothetical protein alr3931 [Nostoc sp. PCC 7120]
gi|17133065|dbj|BAB75630.1| alr3931 [Nostoc sp. PCC 7120]
Length = 223
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 37/208 (17%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNF-------TISLDNFLSGRLHTLITSAFSHIDVEH 180
YGLI N VF L ++ N F L + L+G TL TS F H H
Sbjct: 18 YGLIGMNVLVF-LHEVSLSNAQLNQFFSQYAVVPQELTSNLAGEWPTLFTSQFLHGGWWH 76
Query: 181 IVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
++SNM+ L+ FG +I LG +YL +FYL A A+ GM
Sbjct: 77 LISNMVFLWVFGNNIEERLGHFKYL------------IFYLACGALAALCQWFIGM---- 120
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFF---IPVPAF-LLGVFLIGKDML 291
S P+LGASGA++ ++ + P+A ++ FF I VPA ++G+F + +
Sbjct: 121 SSTIPSLGASGAISGVLGAYLIRFPQARVTTLIFLGFFVTTISVPALVIIGIFFVQNVIS 180
Query: 292 RIIEGNSNISGSAHLGGAAVAALAWARI 319
++ + + S GG A WA I
Sbjct: 181 GLVSLQAAANMSVQTGGVAY----WAHI 204
>gi|398335808|ref|ZP_10520513.1| intramembrane protease [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 199
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMVSFYSFGRNLEITVGPIKFVLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + D LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNL---DNPLYATLGASGGVCGVLFATILFYPNMSLYMMFIPIPIPGAIYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLAYTYFSSRSGAADGINHDAHLWGA 172
>gi|332664184|ref|YP_004446972.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332998|gb|AEE50099.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 228
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 126 VVYGLIIANTAVFMLW---RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
V Y L+ N VF+L +F+ I + R++TLITS F H V HIV
Sbjct: 18 VSYTLLAINIVVFLLQLSQGDQQGQFIMEYGAIPAEVTQGQRVYTLITSMFLHGSVGHIV 77
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ L+ F +I +G L Y+AG LV HA ++ S+
Sbjct: 78 GNMLFLWIFADNIEAVIGSTRFLIFYLAGG-------LVAHA--------AHIYFNMDSQ 122
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLI------GKDMLRI 293
P +GASGA+ ++ + + P++ + F I VPA L F I G L+I
Sbjct: 123 IPTVGASGAIAGVLGAYMIMFPQSQVKVLFLIFPFRVPALLFLGFWIFSQFQYGVGSLQI 182
Query: 294 IEGNSN-ISGSAHLGGAAVAAL-------AWARIRRRGF 324
++ I+ AH+GG A+ + R +RGF
Sbjct: 183 ETAETDGIAYWAHIGGFVFGAVRGFSLRNEYIRSLKRGF 221
>gi|354545487|emb|CCE42215.1| hypothetical protein CPAR2_807640 [Candida parapsilosis]
Length = 328
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTLITSAFSHI 176
L+Q+ + +V+ +I N AVF++WR+ + + I L DN S TL+ SAFSH
Sbjct: 122 LKQHPQA-LVWSIIAINGAVFLMWRVPQLQRFTMRYAILLKDNIQSP--WTLLWSAFSHQ 178
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
H NM+ F +S+ LG +Y+ A+ S L L S
Sbjct: 179 SFAHFFINMLCFQSFAVSLVGILGVSNFTIMYLNAAVLSSFASLAIPMVLGSSLA----- 233
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLLGVFLIGKDMLR 292
+LGASGA+ ++ +L P + + FFIPVP LG L
Sbjct: 234 ------VASLGASGAIFSVFGCFSYLFPASPVGI-FFIPVPGGAWVLFLGTMLWNAAGCA 286
Query: 293 IIEGNSNISGSAHLGGAAVA 312
+ G + +AHLGG+ V
Sbjct: 287 LRWGTFDY--AAHLGGSLVG 304
>gi|423346054|ref|ZP_17323742.1| hypothetical protein HMPREF1060_01414 [Parabacteroides merdae
CL03T12C32]
gi|409220852|gb|EKN13805.1| hypothetical protein HMPREF1060_01414 [Parabacteroides merdae
CL03T12C32]
Length = 199
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL-----LKLYMAGAIGGSVFYL 220
+ LIT F H D+ H++ NM + FG + G L + LY G + S++ L
Sbjct: 41 YRLITHGFVHADMTHLLVNMFTFWSFGTYMESAFGYLGLGTGGYIGLYFGGMVAASLYDL 100
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ +R+ DP ++GASGAV+A++ IFL+P + F +P+P +
Sbjct: 101 I---------RRRN----DPYYV-SIGASGAVSAVLFTSIFLDPWGKILFFAVLPIPGIV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
GV + + N++ +AH GA
Sbjct: 147 FGVIYLAYCQYMARKAGDNVNHNAHFYGA 175
>gi|402831919|ref|ZP_10880589.1| peptidase, S54 family [Capnocytophaga sp. CM59]
gi|402280352|gb|EJU29063.1| peptidase, S54 family [Capnocytophaga sp. CM59]
Length = 266
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 140 LWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
LW+I P ++A +SL L+ R T +T +F H H V N I LYF G+
Sbjct: 37 LWQIETPFVRDYLALWQHVSL---LAKRPWTWLTYSFFHASFLHSVFNAIMLYFVGVLFM 93
Query: 197 RTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
P+ L +Y+ G + G + ++V ++ L + LGAS + A +
Sbjct: 94 NLFTPKRFLAIYIGGVVAGGLLFMVLYSLLPAFAGHDDY---------LLGASAGIMAPL 144
Query: 257 LLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
+ P +Y +P + +G ++ D++ I GN+ AHLGGA V L
Sbjct: 145 ICLATYTPSYRIYLFGVFSLPLWSIGALMVLIDLVSIPIGNAG-GHIAHLGGALVGFLYA 203
Query: 317 ARIRRR 322
++ R
Sbjct: 204 CHLKGR 209
>gi|295674543|ref|XP_002797817.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280467|gb|EEH36033.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 576
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 354 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 411
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G I + LG L LY++ + S+ L H S
Sbjct: 412 AANMLILWFVGTRIHQELGRGDFLSLYLSSGVFASLTSLTVHVLQNKLS----------- 460
Query: 242 RTPALGASGAVNAIML--LDIFLNPKATLYF 270
+LGASGA+ ++ I N K T+ F
Sbjct: 461 -VTSLGASGAIAGLVAAWCIIHSNDKLTIAF 490
>gi|448407631|ref|ZP_21573826.1| Rhomboid family protein [Halosimplex carlsbadense 2-9-1]
gi|445674881|gb|ELZ27416.1| Rhomboid family protein [Halosimplex carlsbadense 2-9-1]
Length = 310
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-GAIGG--SVFYLVYH 223
T TS F+H HI N I ++FFG + +G L++ GA+ G V + +Y
Sbjct: 129 TWFTSIFAHGGFGHIAINSIVIFFFGRIVEDYVGSRDFAVLFLGSGALAGLGQVGFQIY- 187
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+ G+ P +GASGA AIM + LNP T+Y F +PVP +LL V
Sbjct: 188 -------QYGGIPAPGPGVAGVIGASGAALAIMAVLTVLNPNLTVYLYFLLPVPLWLLTV 240
Query: 284 FLIGKDMLRIIEGNSNISGSAH 305
G + I+ G+A
Sbjct: 241 GYTGYTVYLILSTGIGAGGTAQ 262
>gi|392533728|ref|ZP_10280865.1| rhomboid-like protein [Pseudoalteromonas arctica A 37-1-2]
Length = 361
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADPKF--MANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
V GLI+ NT +F L+ + F + +NF ++ + G L T++T F H + H+V
Sbjct: 154 VTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMHLV 213
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-S 241
NM LY G ++ LG + L Y+A + S ++V P S
Sbjct: 214 GNMYFLYIVGDNLEDVLGHKRFLLWYLACGLLASF----------------ASYIVSPMS 257
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLIGKDMLRIIEGNS 298
P +GASGA+ + + + A+L F F I + A +G ++ + G
Sbjct: 258 NIPGVGASGAIAGLFGMYLIWFRHASLTFMFVIYQKKLSAVWFFAIWLGFNIFGAVTGPD 317
Query: 299 NISGSAHLGG 308
I AH+GG
Sbjct: 318 GIDYGAHIGG 327
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
Y +I VF+L + DP ++ F +S+ + LS R L+TS F H + H+ NM+
Sbjct: 76 YIIIGITVLVFILQLLLDP-WLTGLFDLSMGSLLS-RPWGLVTSMFLHAGLAHLFFNMLA 133
Query: 188 LYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
L+FFG + R + + L LY +G + G V ++ + +
Sbjct: 134 LFFFGPLLERRIESKGFLALYFGSGILAGLVQVFIF------------------PTSAVI 175
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN-ISGSAH 305
GASGA+ ++ L P T+ +F+P+ + + D+ ++ G + I+ +AH
Sbjct: 176 GASGAIFGVLGALTVLMPDLTVIL-YFVPLKMVYVTILFAILDLYPMLTGTPDGIAHAAH 234
Query: 306 LGG--AAVAALAWARIRRR 322
L G A +AA W R R R
Sbjct: 235 LTGLAAGLAAGFWYRERYR 253
>gi|448300514|ref|ZP_21490513.1| rhomboid family protein [Natronorubrum tibetense GA33]
gi|445585333|gb|ELY39628.1| rhomboid family protein [Natronorubrum tibetense GA33]
Length = 294
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202
+A P+ + F +S N + T +TS F+H HIV N I ++FFG + R +G
Sbjct: 99 VAGPRVAQDLFVLSSWNI--EYVWTWVTSVFAHGGFMHIVFNSIVIFFFGPLVERYVGS- 155
Query: 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
LKL ++ ++V A + M DPS LGASGA AI+ + L
Sbjct: 156 --LKL--------AILFVVSGALAGLGQIGISMAQGDPSSV--LGASGAALAILGVITIL 203
Query: 263 NPKATLYFDFFIPVPAFLL 281
NP +Y F IP+P ++L
Sbjct: 204 NPNLRVYLFFMIPMPLWIL 222
>gi|321465959|gb|EFX76957.1| hypothetical protein DAPPUDRAFT_306013 [Daphnia pulex]
Length = 253
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 28/224 (12%)
Query: 108 ASFRYRWRSWLRQYGSSE---VVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSG 163
SFR + W +E + Y +++ANT V + WRI A +FM + F + F
Sbjct: 26 GSFRNQMNHWWNSQNMTEGQKLFYCILLANTTVLLAWRIPALTQFMISYFCS--NPFARA 83
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
++ S FSH H +NM LY F + +G E L Y++ + S+ ++
Sbjct: 84 VCWPMVFSTFSHHSFLHFGANMYVLYSFMNATTHYMGKEQFLAFYLSAGVISSLASHIFK 143
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
L M +LGASGA+ ++ +P A L F +P F
Sbjct: 144 TALRMPG-------------ISLGASGAIMGVLAYFCSQHPDALLQIAF---IPGFTFTA 187
Query: 284 -----FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
L+ D + +I +AHLGG A+ L W+ +R
Sbjct: 188 DSGLKALLCFDTVGLIMRWKLFDHAAHLGG-AIFGLFWSHWGQR 230
>gi|319900801|ref|YP_004160529.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
gi|319415832|gb|ADV42943.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
Length = 227
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
F+A+NF ++ IT F H H+ NM ++ FG + + GP+ L
Sbjct: 41 FLADNFNVA----------QFITYMFMHGGFTHLFFNMFAVWMFGRILEQVWGPKRFLFY 90
Query: 208 YMAGAIGG-----SVFYLVYHAFLAMSSKRQGMWVVDPSRT-----PALGASGAVNAIML 257
Y+A IG SV Y+ Y L+ + V P + +GASGAV AI+L
Sbjct: 91 YLACGIGAGLIQESVQYIHYETVLSAYDSVNTGYSVIPMKEYLNMMTTVGASGAVYAILL 150
Query: 258 LDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-----AHLGGAAVA 312
L P + F F +PVP F+IG ++ + G +N G AHLGG
Sbjct: 151 AFGMLFPNQQM-FIFPLPVP-IKAKYFVIGYALIELYSGFANNPGDNVAHFAHLGGMVFG 208
Query: 313 ALAWARIRRR 322
+ R++
Sbjct: 209 FILIMYWRKK 218
>gi|307200222|gb|EFN80516.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Harpegnathos saltator]
Length = 223
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 21/205 (10%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHT 167
+R + +W R + V+ ++ NT VF+ WR+ A K M F + + +S
Sbjct: 1 WRAKMETWWRNLTEGQRVFVPILFLNTIVFLAWRVPAFQKTMVRYFCSNPASSVS--CWP 58
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++ S FSH ++ H+ +NM L+ F I TLG E + LY++ + + +Y L
Sbjct: 59 MVFSTFSHYNIFHLAANMFVLHSFSSLIVSTLGKEQFVALYLSSGVVSNFVSYIYKTILK 118
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---F 284
+ +LGASGAV ++ P LY F+P+ F G
Sbjct: 119 LPVM-------------SLGASGAVLGVIGFTSTEYPTMPLYL-IFLPMFTFSAGATIKT 164
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGA 309
L+ D + I I + H+GG
Sbjct: 165 LLVIDTIGCIARWKWIDHAGHIGGT 189
>gi|17647867|ref|NP_523704.1| rhomboid-7 [Drosophila melanogaster]
gi|7303544|gb|AAF58598.1| rhomboid-7 [Drosophila melanogaster]
gi|220949428|gb|ACL87257.1| rho-7-PA [synthetic construct]
gi|220958598|gb|ACL91842.1| rho-7-PA [synthetic construct]
Length = 351
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
+++ N F +WR+ P + T N + + + S FSH H+ +NM +
Sbjct: 151 ILLCNLVAFAMWRV--PALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVM 208
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F + +LG E L +Y++ + S+ ++Y A ++ + GM +LGA
Sbjct: 209 HSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKA----ATSQAGM---------SLGA 255
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSAH 305
SGA+ ++ P L F+P F G L+G D ++ G +AH
Sbjct: 256 SGAIMTLLAYVCTQYPDTQLSI-LFLPALTFSAGAGIKVLMGIDFAGVVMGWKFFDHAAH 314
Query: 306 LGGA 309
LGGA
Sbjct: 315 LGGA 318
>gi|378727658|gb|EHY54117.1| rhomboid-like protein [Exophiala dermatitidis NIH/UT8656]
Length = 567
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 115/294 (39%), Gaps = 35/294 (11%)
Query: 38 RPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLF 97
RP +SF K R+Q L+L++ L R F + LL S L + + +
Sbjct: 280 RPPNSFEKWVLKAQN--RAQSKLTLESPEVTQKTLFQRLFPSFLLVSVLCGASYLYSQYW 337
Query: 98 FRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL 157
R + +R F S + L+ N A+F WR+ N + I
Sbjct: 338 TRPRHADRFFPDVSL----------SVATIGTLVALNVAIFAAWRMPPLWNSLNKYFIIA 387
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ +++ S FSH H+++NM+ L FG+ + +G + +Y+ + GS
Sbjct: 388 PAYPYA--FSMLGSLFSHQKFTHLLANMLTLVLFGLPLHEEVGRGTFVAIYLCSGLIGSF 445
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
L HA Q W+ T +LGASG I+ ++L+ + F P
Sbjct: 446 ASLARHAV-------QCNWL-----TTSLGASGCTYGIVAAYLYLHADSRFSILFLPPDL 493
Query: 278 A----FLLGVFL---IGKDMLRIIEGNSNISGSAHLGG--AAVAALAWARIRRR 322
A F G L G ++R + I HLGG + V A W R R
Sbjct: 494 AEKFSFTGGAVLAAITGYHIIRALGPVKRIDYVDHLGGLVSGVVAAWWWRTNRE 547
>gi|374386349|ref|ZP_09643849.1| hypothetical protein HMPREF9449_02235 [Odoribacter laneus YIT
12061]
gi|373224278|gb|EHP46618.1| hypothetical protein HMPREF9449_02235 [Odoribacter laneus YIT
12061]
Length = 305
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-------------TLITSAFSHI 176
LI N +F+L +I + + + + NFL L T+ T F+
Sbjct: 29 LIYINIGIFLLVKIINVLVILSGQKAGVGNFLLENLGIPAYFDSLLTHPWTVFTYMFTQF 88
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFLAMSSKRQGM 235
D H++ NM+ LY+FG + L +Y+ G + G+ Y L Y+ A R
Sbjct: 89 DFFHLLFNMLWLYWFGSFFLNHFTQKELTGVYLLGGLCGAFTYVLAYNVLPAFELSRYYS 148
Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIE 295
W A+GAS +V A++ P+ +Y PV L +F D+L I
Sbjct: 149 W--------AIGASASVMAVVFAVCLYLPQQRIYIFLIGPVKLIYLALFTAAIDILSIPS 200
Query: 296 GNSNISGSAHLGGA 309
N+ AHLGGA
Sbjct: 201 SNAG-GHIAHLGGA 213
>gi|392553138|ref|ZP_10300275.1| rhomboid-like protein [Pseudoalteromonas spongiae UST010723-006]
Length = 360
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 126 VVYGLIIANTAVFMLW--RIADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIV 182
V + LI N +F + I F+ NF + + +G+ + TL+T F H V H+V
Sbjct: 153 VNWSLIAINILIFCAYFFNIESFGFVLENFALRPADVNNGQEIWTLLTCVFLHGSVMHLV 212
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM LY G ++ LG + L Y+ IG S+F LV MS DP+
Sbjct: 213 GNMYFLYIIGDNLEDALGHKKYLMYYLICGIGASLFSLV------MSQ--------DPN- 257
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLIGKDMLRIIEGNSN 299
P++GASGA+ + + + A+L F F I + A I ++ +I
Sbjct: 258 IPSVGASGAIAGLFGMYLMWFRHASLTFMFVIYQKKLSAVWFFAIWIAINIFGLIVLQDG 317
Query: 300 ISGSAHLGGAAVA 312
+ AH+GG V
Sbjct: 318 VDYGAHIGGFVVG 330
>gi|383451073|ref|YP_005357794.1| rhomboid family protein [Flavobacterium indicum GPTSA100-9]
gi|380502695|emb|CCG53737.1| Rhomboid family protein [Flavobacterium indicum GPTSA100-9]
Length = 211
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 16/179 (8%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
II T + L DP F F ++ G+ + L +S F H D H+ NM +
Sbjct: 8 IIGATILVSLKGFNDPSFF-EKFKFNVSAVKYGQQYRLFSSGFLHADFFHLFFNMFSFWS 66
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASG 250
F + +L +Y + GS+F +H + A+GASG
Sbjct: 67 FSPILLANFETRNILLIYFGSMMLGSLFMYYFHK--------------NEPYYSAIGASG 112
Query: 251 AVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
AV+ I+ + L P L FFIP+P ++ V + + + NI +AH GGA
Sbjct: 113 AVSGIIYSAVLLEPNIRL-LVFFIPMPGYVFAVLYLAYSIFGMKGRFDNIGHTAHFGGA 170
>gi|194335065|ref|YP_002016925.1| rhomboid family protein [Prosthecochloris aestuarii DSM 271]
gi|194312883|gb|ACF47278.1| Rhomboid family protein [Prosthecochloris aestuarii DSM 271]
Length = 283
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
++ L+T F H + HI+ NM L+ FG I G + Y IG ++ L
Sbjct: 62 QIWQLVTYMFMHGGLAHILFNMFALWLFGAEIENYWGTKEFTAYYFVCGIGAALINLA-- 119
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
S P +GASGAV I+L + P ++ F P+ A
Sbjct: 120 -------------TTIGSPYPTVGASGAVFGILLAFGMMFPDRYIFLYFLFPIKA---KY 163
Query: 284 FLIGKDMLRIIEG--------NSNISGSAHLGGAAVAALAWARIRRRGF 324
F+ G + ++ G SNI+ AH+GG VA A+ +IR++G+
Sbjct: 164 FVAGYAAIELLMGINNSTMGSGSNIAHFAHIGG-MVAGFAYIKIRQQGW 211
>gi|75907992|ref|YP_322288.1| rhomboid-like protein [Anabaena variabilis ATCC 29413]
gi|75701717|gb|ABA21393.1| Rhomboid-like protein [Anabaena variabilis ATCC 29413]
Length = 223
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 37/208 (17%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNF-------TISLDNFLSGRLHTLITSAFSHIDVEH 180
YGLI N VF L ++ N F L + L+G TL TS F H H
Sbjct: 18 YGLIGMNVLVF-LHEVSLSNAQLNQFFSQYAVVPQELTSNLAGEWPTLFTSQFLHGGWWH 76
Query: 181 IVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
++SNM+ L+ FG +I LG +YL +FYL A A+ GM
Sbjct: 77 LISNMVFLWVFGNNIEERLGHFKYL------------IFYLACGALAALCQWFIGM---- 120
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFF---IPVPAF-LLGVFLIGKDML 291
S P+LGASGA++ ++ + P+A ++ FF I VPA ++G+F + +
Sbjct: 121 SSTIPSLGASGAISGVLGAYLIRFPQARVTTLVFLGFFVTTISVPALVIIGIFFVQNVIS 180
Query: 292 RIIEGNSNISGSAHLGGAAVAALAWARI 319
++ + + S GG A WA I
Sbjct: 181 GLVSLQAAANMSVQTGGVAY----WAHI 204
>gi|340718437|ref|XP_003397674.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Bombus terrestris]
Length = 343
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+R+ +W + E ++ + N VF+ W I P F + + R +
Sbjct: 121 WRHTMENWWKNLSEGERIFIPICFLNVLVFLSWHI--PAFRLTMYRYFSCTPTTSRCWPM 178
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+ FSH + H++ NM LY F LG E L LY+ + S +Y A + +
Sbjct: 179 LFVTFSHCSLLHLIVNMYVLYGFSKIAVAQLGREQFLALYLISGVVSSFSSYLYKAVVGI 238
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--- 285
R P+LGASGA+ + P A L F+P+ F +
Sbjct: 239 -------------RDPSLGASGAIMGVFGFVCTQFPNAYLSI-IFLPMFKFTANTVMKAV 284
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+G D L + +AHLGGA
Sbjct: 285 MGLDTLGCLMRWQRFDHAAHLGGA 308
>gi|347968223|ref|XP_312303.4| AGAP002626-PA [Anopheles gambiae str. PEST]
gi|333468105|gb|EAA08059.4| AGAP002626-PA [Anopheles gambiae str. PEST]
Length = 360
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIAD-----PKFMANN 152
R + + +R W + E ++ I A N V+ LWRI K+ A+N
Sbjct: 127 RMKHQRQEMEQWRKDLTGWWNKLSPGERIFAPICALNVIVYGLWRIPSLAPTMVKYFASN 186
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
+ + S FSH + HI++NM L+ F + TLG E L +Y++
Sbjct: 187 PAAKAVCW------PMFLSTFSHYSLFHILANMYVLHSFSHAAVATLGREQFLGVYLSAG 240
Query: 213 IGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF 272
+ S H F + +++ G+ +LGASGA+ I+ P L
Sbjct: 241 VIAS---FASHVFKTV-TRQPGL---------SLGASGAIMGILAYVCSQYPDTQLSI-L 286
Query: 273 FIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F+P+ F G ++G D+ ++ G +AHLGGA
Sbjct: 287 FLPMYTFSAGAAIKVIMGIDLAGVLLGWRIFDHAAHLGGA 326
>gi|383115324|ref|ZP_09936082.1| hypothetical protein BSGG_2794 [Bacteroides sp. D2]
gi|313695259|gb|EFS32094.1| hypothetical protein BSGG_2794 [Bacteroides sp. D2]
Length = 301
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGFLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G +V GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVAGATLV--------GASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALIV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGGA 202
>gi|448604368|ref|ZP_21657620.1| rhomboid-like intramembrane serine protease [Haloferax
sulfurifontis ATCC BAA-897]
gi|445744528|gb|ELZ96004.1| rhomboid-like intramembrane serine protease [Haloferax
sulfurifontis ATCC BAA-897]
Length = 299
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + ++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQHVKGR 274
>gi|427787773|gb|JAA59338.1| Putative integral membrane prote [Rhipicephalus pulchellus]
Length = 309
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 89 SFFDGKVL-FFRAQFPERSFASFRYRW---RSWLRQY---------GSSEVVYGLIIANT 135
SF V + R + R+ S R+ W R LRQ + V YGLI AN
Sbjct: 54 SFLGAAVWQYERMRREARAIVSQRWTWEPKRGSLRQQLNTWWHSIPEGNRVAYGLIAANA 113
Query: 136 AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSI 195
VF+LWR+ + + + +S L + S FSH + H+ +NM+ L F +
Sbjct: 114 VVFLLWRVPQMEPIMLRYFVSHPASKPLCL-PMFLSTFSHHSLFHLAANMVVLNSFAPTA 172
Query: 196 GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAI 255
LG E L +Y++G + S+ ++ +++ R M +LGASGA+ A+
Sbjct: 173 VALLGREQFLAMYVSGGVVSSLASYLHK----VATHRAAM---------SLGASGAILAV 219
Query: 256 MLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGSAHLGG 308
+ P A L F+P F L G D ++ + +AHLGG
Sbjct: 220 VGALCVQYPDAQLSI-IFLPFFTFSAAAALKGVLAFDTAGLLFRWQLLDHAAHLGG 274
>gi|448624096|ref|ZP_21670169.1| rhomboid-like intramembrane serine protease [Haloferax
denitrificans ATCC 35960]
gi|445750063|gb|EMA01502.1| rhomboid-like intramembrane serine protease [Haloferax
denitrificans ATCC 35960]
Length = 299
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H HIV N I L+FFG + R +G L+ LV
Sbjct: 129 TWVTSIFAHGGFYHIVGNSIVLFFFGPLVERYVGSRKFAALF-----------LVSGMLA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
++ M + S + +GASGA+ A++ + LNP +Y F IPVP +L +
Sbjct: 178 GLAQVGSSMLLSPGSLSAVVGASGAIMAVLGVLTVLNPGLRIYLYFIIPVPLWLFTLGFA 237
Query: 287 GKDMLRIIEGNSN-ISGSAHLGGAAVAALAWARIRRR 322
G + + +++ I+ AHL G + ++ R
Sbjct: 238 GISVFFFVSQSADGIAHFAHLIGLVIGLAYGQHVKGR 274
>gi|392568913|gb|EIW62087.1| hypothetical protein TRAVEDRAFT_163861 [Trametes versicolor
FP-101664 SS1]
Length = 313
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMAN-----------NFTISLDNFL 161
R R+ + S+ + +G+I N VF+ W +A K+ + NFT S +N
Sbjct: 100 RLRARINAIPSNYIFWGIIGLNGLVFVSWNLAWAKYQSTGDASSYLWLRRNFTSSAENMQ 159
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
GR T++TS FSH HI+ N YF + LG L LY+ G I S +
Sbjct: 160 GGRWWTVVTSCFSHESSMHILFNGFTYYFMAPLVLSILGNVGFLGLYLGGGITSSFAGIA 219
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AF 279
+ + + P + GASGA+ +++ + P AT IP+P AF
Sbjct: 220 WRNYNSPY----------PGPAGSHGASGAIYSVISFFACVAPTATFALFGIIPLPAWAF 269
Query: 280 LLGVFLI-GKDMLRIIEGNSNISGSAHLGG 308
+ G+FL G + ++ +G H+GG
Sbjct: 270 VTGIFLYDGYSAVNSKRVATDTAG--HIGG 297
>gi|325299445|ref|YP_004259362.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324318998|gb|ADY36889.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 222
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVEHIVSNMIG 187
L+I N F+ +A + N + L FL+ + LIT F H + +HI NM
Sbjct: 8 LLIINVLCFLGAMVARRYGVDLNDMLGLHFFLASDFNPAQLITYMFMHANFQHIFFNMFA 67
Query: 188 LYFFGMSIGRTLGPEYLLKLYM-----AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-- 240
++ FG ++ GP+ L Y+ AG I +V+Y Y S G +
Sbjct: 68 VWMFGRTLEMVWGPKRFLFYYILCGIGAGLIQEAVYYFEYADIYKYSGVDIGTGITLSVG 127
Query: 241 ---SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI---I 294
+ +GASGAV AI+L L P + + F F IP+P F+IG +L + I
Sbjct: 128 EFLNMQTTVGASGAVYAILLAFGMLFPNSEM-FIFPIPMP-IKAKYFVIGYAVLELVLGI 185
Query: 295 EGNSNISGSAHLGG 308
G I+ AHLGG
Sbjct: 186 SGGDGIAHFAHLGG 199
>gi|91082909|ref|XP_972425.1| PREDICTED: similar to rhomboid-7 CG8972-PA [Tribolium castaneum]
Length = 327
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 21/198 (10%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
+V + + N VF WRI + FM F + + +I S FSH H++
Sbjct: 121 EKVFVPICLINVLVFGAWRIPRLQPFMLKYFCSNPGS--KSVCWPMILSTFSHYSGFHLL 178
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
+NM L+ F +LG E L LY+ + S VY +K+ G+
Sbjct: 179 ANMYVLHSFSTGAVHSLGKEQFLGLYLGAGVISSFTSYVYKVI----TKQPGL------- 227
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSN 299
+LGASGA+ AI+ P+ L +P+ F G ++G D ++ G
Sbjct: 228 --SLGASGAIMAILGYVCTQYPETKLGI-ILLPIFTFSAGAAIKVIVGIDTAGVLMGWKF 284
Query: 300 ISGSAHLGGAAVAALAWA 317
+AHLGGAA + WA
Sbjct: 285 FDHAAHLGGAA-CGIMWA 301
>gi|392589747|gb|EIW79077.1| hypothetical protein CONPUDRAFT_145250 [Coniophora puteana
RWD-64-598 SS2]
Length = 443
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 116 SWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFS 174
+WL + V + L AN AV++LWR+ + FM+ +FT + LSGR +TL+TS FS
Sbjct: 165 AWLNAHEGRRVCWTLCAANAAVWVLWRVPRLQGFMSRSFT---HHPLSGRSYTLLTSVFS 221
Query: 175 HIDVEHIVSNMIGLYFFGMS 194
H H+ +N L FG +
Sbjct: 222 HKSFLHLAANSFALASFGTA 241
>gi|354611983|ref|ZP_09029935.1| Rhomboid family protein [Halobacterium sp. DL1]
gi|353191561|gb|EHB57067.1| Rhomboid family protein [Halobacterium sp. DL1]
Length = 320
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
FT++ ++ L + T ITS FSH HI+ N I LYFFG + + +G + L++A
Sbjct: 123 FTVTTEHPL--YVWTWITSVFSHGGFTHILLNSIVLYFFGPVVEQRIGSKKFAALFIAAG 180
Query: 213 IGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA-------LGASGAVNAIMLLDIFLNPK 265
+ L A + S W P +PA LGASGA+ +++ + LNP
Sbjct: 181 V------LAGLAQVGASLIMNPSWWGQP-LSPALNVGSAVLGASGAIASLLGVLTVLNPN 233
Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDML---RIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+Y F IP+P ++ G + G ++ AHL G + A+++R
Sbjct: 234 LRIYLYFIIPMPLWIATALFAGYSIFVSSAGGIGAGGVAQVAHLAGLGLGLAYGAKLKRE 293
Query: 323 G 323
G
Sbjct: 294 G 294
>gi|333912953|ref|YP_004486685.1| rhomboid family protein [Delftia sp. Cs1-4]
gi|333743153|gb|AEF88330.1| Rhomboid family protein [Delftia sp. Cs1-4]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T ITSAF H H+V NM+ L+ FG S+ LG L Y+ GA+G S+ H
Sbjct: 152 TWITSAFLHASTGHLVGNMLFLFMFGFSVELALGRATYLLFYLLGAVGASLLSSWVHGGA 211
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIM--------LLDIFLNPKATLYFDFFIPVPA 278
+ LGASGAV A+M L I + YF+ ++ PA
Sbjct: 212 GVYGH-------------GLGASGAVAALMGMYAVMYRLRRIRFFYQLFFYFN-YVTAPA 257
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAV-AALAWARIRRR 322
+L I ++L+ + AHLGG AAL +RR+
Sbjct: 258 LILLPAWIANEVLQHFFSGRGVDYMAHLGGLLTGAALMALHLRRK 302
>gi|357417155|ref|YP_004930175.1| hypothetical protein DSC_07415 [Pseudoxanthomonas spadix BD-a59]
gi|355334733|gb|AER56134.1| hypothetical protein DSC_07415 [Pseudoxanthomonas spadix BD-a59]
Length = 201
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG----SVFYL--V 221
L+T F H D H+ NM+ L+FFG I + +MA G +FYL +
Sbjct: 43 LLTHGFIHADFMHLFFNMLTLFFFGRPI----------EGFMAEQTGALWVFPLFYLSAL 92
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
A L K Q DP+ +LGASGAV+A++ I L P + + F P+PA +
Sbjct: 93 VVAILPTYLKHQK----DPNYF-SLGASGAVSAVLFAFILLAPWSRIVV-FVFPMPAIVF 146
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ + + G I+ SAHL GAA L
Sbjct: 147 AILYVAYSIWMDRRGGDRINHSAHLSGAAYGIL 179
>gi|254292851|ref|YP_003058874.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254041382|gb|ACT58177.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 231
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N+ G L T +T H D H+ N + FG + R LG L +Y+A IGG++F
Sbjct: 78 NWYDGPL-TFLTHGLLHADWAHVGMNAVFALAFGTGVVRALGVWRTLIIYVASQIGGALF 136
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
YL + + + + A+GASGAV+ + L K + F
Sbjct: 137 YLYFGQIMGGDT------------SIAVGASGAVSGLTGAVFLLMAKGQMLSQQF----G 180
Query: 279 FLLGVFLIGKDMLRIIEG---NSNISGSAHLGGAAVAALAWARIRR 321
L GVFL+G ML ++ S I+ AH+GG V AL+ A + R
Sbjct: 181 VLSGVFLLGNVMLAVVGPTLLGSVIAWEAHVGGYIVGALSAAIMLR 226
>gi|390955646|ref|YP_006419404.1| hypothetical protein Aeqsu_2948 [Aequorivita sublithincola DSM
14238]
gi|390421632|gb|AFL82389.1| putative membrane protein [Aequorivita sublithincola DSM 14238]
Length = 216
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ +SAF H D H++ NM+ LYFF + ++G Y + +Y+ + G++ +H
Sbjct: 47 MFSSAFLHADFSHLLFNMLTLYFFANVVIGSVGVIYFVVIYVVSLLAGNLLSFYFHK--- 103
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP--VPAFLLGVFL 285
D A+GASGAV I+ I P LY FFIP +PA+L G+
Sbjct: 104 -----------DEYHYSAIGASGAVMGILYSAILFFPNMGLYL-FFIPIAIPAWLFGMAY 151
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ + + + NI AH+GGA
Sbjct: 152 LLYSIYVMKKRMGNIGHDAHIGGA 175
>gi|448340715|ref|ZP_21529685.1| rhomboid family protein [Natrinema gari JCM 14663]
gi|445629655|gb|ELY82931.1| rhomboid family protein [Natrinema gari JCM 14663]
Length = 304
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H + HI N I L+FFG + R +G L++ + G + L A
Sbjct: 121 TWVTSIFAHGGLYHIAGNSIVLFFFGPLVERYVGSRKFAILFL---VSGVLAGLGQIAIQ 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVF 284
+ + VV P +GASGA AI+ + LNP +Y F +PVP +LL G
Sbjct: 178 ILQTS-----VVTPLTPGVVGASGAALAILGVLTVLNPGLKVYLYFILPVPIWLLTAGYA 232
Query: 285 LIGKDMLR-IIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+I L + G+ I+ AHL G V LA+ + ++
Sbjct: 233 VISITFLSGAVGGSGGIAHMAHLVG-LVIGLAYGQYVKQ 270
>gi|389861448|ref|YP_006363688.1| rhomboid family protein [Thermogladius cellulolyticus 1633]
gi|388526352|gb|AFK51550.1| Rhomboid family protein [Thermogladius cellulolyticus 1633]
Length = 447
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 31/212 (14%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNF-----LSGRLHTLI---TSAFSHIDVEH 180
GLI ANTAV++ + ++ ++I F S + LI T+ F+H D+ H
Sbjct: 19 GLIAANTAVYVYTSYQNYLLESSAWSIYSLGFTPYLLFSSPVQGLIRVFTAMFTHADILH 78
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I NM LY FG S+ LG L +Y A + S+F + AF ++S+ M
Sbjct: 79 IFFNMYFLYLFGYSVENYLGRLRYLLVYFASGVVASLF---HTAFSSVSNWGLLM----- 130
Query: 241 SRTPALGASGAVNAIM--LLDIFLNPKATLYFDFFI-----PVPAFLLGVFLIGKDMLRI 293
TPA+GASGA++ ++ L +F N K ++ I PV ++ VF+I L++
Sbjct: 131 --TPAVGASGAISGVLGAYLILFPNTKMSMCTILVILPVCFPVASY---VFMILWFALQV 185
Query: 294 IEG---NSNISGSAHLGGAAVAALAWARIRRR 322
I G + I+ AH+GG L I RR
Sbjct: 186 IYGYFTATTIATFAHVGGFLTGILGTWLIARR 217
>gi|402820323|ref|ZP_10869890.1| hypothetical protein IMCC14465_11240 [alpha proteobacterium
IMCC14465]
gi|402511066|gb|EJW21328.1| hypothetical protein IMCC14465_11240 [alpha proteobacterium
IMCC14465]
Length = 277
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++TS F H + H++ NM+ L+ FG +I +G + S + +Y
Sbjct: 72 TVLTSMFLHGGIMHLLGNMLYLWIFGDNIEDCVGSK-------------SRYIALYVCCG 118
Query: 227 AMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATL-----YFDFF--IPVPA 278
+ ++ Q + VDP S P +GASGA+ ++ + L+P+A + +F FF I VPA
Sbjct: 119 SAAAFAQSL--VDPNSMIPMIGASGAIAGMLGAYLVLHPRANIICLVGFFVFFRTINVPA 176
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
FL+ IG L + + +S ++ AH+GG
Sbjct: 177 FLVLGGWIGLQFLNLGQVDSGVAYVAHIGG 206
>gi|397773043|ref|YP_006540589.1| rhomboid family protein [Natrinema sp. J7-2]
gi|397682136|gb|AFO56513.1| rhomboid family protein [Natrinema sp. J7-2]
Length = 304
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H + HI N I L+FFG + R +G L++ + G + L A
Sbjct: 121 TWVTSIFAHGGLYHIAGNSIVLFFFGPLVERYVGSRKFAILFL---VSGVLAGLGQIAIQ 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL--GVF 284
+ + VV P +GASGA AI+ + LNP +Y F +PVP +LL G
Sbjct: 178 ILQTS-----VVTPLTPGVVGASGAALAILGVLTVLNPGLKVYLYFILPVPIWLLTAGYA 232
Query: 285 LIGKDMLR-IIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+I L + G+ I+ AHL G V LA+ + ++
Sbjct: 233 VISITFLSGAVGGSGGIAHMAHLVG-LVIGLAYGQYVKQ 270
>gi|298480086|ref|ZP_06998285.1| rhomboid family protein [Bacteroides sp. D22]
gi|298273895|gb|EFI15457.1| rhomboid family protein [Bacteroides sp. D22]
Length = 301
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G + +GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVVG--------STLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
IG D+L I N+ AHLGG A+A L +A +G
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|434407760|ref|YP_007150645.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
gi|428262015|gb|AFZ27965.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
Length = 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 51/215 (23%)
Query: 128 YGLIIANTAVFM-LWRIAD-------------PKFMANNFTISLDNFLSGRLHTLITSAF 173
YGLI N VF+ R++D P+ ++ NF +G TLITS F
Sbjct: 18 YGLIGMNILVFLHEVRLSDKPLEQFFQMYAVIPQELSTNF--------AGEWTTLITSQF 69
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
H H++SNM+ L+ FG +I LG +YL +FYL+ A A+
Sbjct: 70 LHGGWWHLISNMVFLWVFGNNIEDRLGHFKYL------------IFYLICGASAALCQWF 117
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKAT----LYFDFFIP---VPAF-LLGVF 284
GM S P+LGASGA+ ++ I P+A+ ++ FFI V A+ ++G+F
Sbjct: 118 IGM----NSAIPSLGASGAIAGVLGAYILWFPQASVVTLVFLGFFITTIRVSAWIIIGLF 173
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
I +I G + + +A++ + WA I
Sbjct: 174 FIQN----LISGFATLQAAANMSVESGGVAYWAHI 204
>gi|423214240|ref|ZP_17200768.1| hypothetical protein HMPREF1074_02300 [Bacteroides xylanisolvens
CL03T12C04]
gi|392693185|gb|EIY86420.1| hypothetical protein HMPREF1074_02300 [Bacteroides xylanisolvens
CL03T12C04]
Length = 301
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G + +GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVVG--------STLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
IG D+L I N+ AHLGG A+A L +A +G
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|254446868|ref|ZP_05060343.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
gi|198256293|gb|EDY80602.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
Length = 297
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 130 LIIANTAVFMLWRIAD----PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE----HI 181
+I AN AVF+L I D P ++ N F D+ SG + T IT +F H H+
Sbjct: 22 IIGANIAVFVLQNIFDREGGPGYIGNFFAFHSDSLQSGMIWTPITYSFLHKVSNGLPLHL 81
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+ NM+G++F G ++ LG L+LY + G++ + V +S + G V
Sbjct: 82 IGNMLGVFFLGRAVLPVLGQSRFLQLYFGASFVGAILWFV-------ASFQSGAGSV--- 131
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA---------FLLGVFLIGKDMLR 292
+GAS AV A++ L P + F +P +L + ++G
Sbjct: 132 ----IGASAAVFALLTFFACLYPDREIQLLLFFVLPIRVKPRYLAYVMLAISVLGLFFQE 187
Query: 293 IIEG-NSNISGSAHLGG 308
+ + I+ SAHLGG
Sbjct: 188 LFAARGAAIAHSAHLGG 204
>gi|398354870|ref|YP_006400334.1| hypothetical protein USDA257_c50510 [Sinorhizobium fredii USDA 257]
gi|390130196|gb|AFL53577.1| hypothetical protein USDA257_c50510 [Sinorhizobium fredii USDA 257]
Length = 263
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T +F H D+ H+ NM+ L+ FG ++ LG L Y+
Sbjct: 75 TFVTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLLFYLL---------------- 118
Query: 227 AMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIPVPAFLL 281
++ ++DP S P +GASGAV+ ++ L+PK ++ F +P+PA +
Sbjct: 119 CAAAGALAHGLIDPASEAPLIGASGAVSGVVAAYFLLHPKVRVWVLVLFRIPLPLPAAIP 178
Query: 282 GVFLIGKDM-LRIIEGNSNISGSAHLGGAAVAALAWARI-RRRG 323
F IG+ + ++ ++S SAH+GG +A LA I RRRG
Sbjct: 179 LAFWIGQQFYMFAVDPGGSVSWSAHVGG-IIAGLALVVILRRRG 221
>gi|262405996|ref|ZP_06082546.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647972|ref|ZP_06725523.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294806914|ref|ZP_06765739.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345510502|ref|ZP_08790069.1| rhomboid protein [Bacteroides sp. D1]
gi|229443212|gb|EEO49003.1| rhomboid protein [Bacteroides sp. D1]
gi|262356871|gb|EEZ05961.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636688|gb|EFF55155.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294445943|gb|EFG14585.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 301
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
SS+ G + +GAS +V AI+ + P + F + L + +
Sbjct: 128 PLFSSQVVG--------STLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
IG D+L I N+ AHLGG A+A L +A +G
Sbjct: 180 IGIDVLSITSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|311748421|ref|ZP_07722206.1| cytoplasmic membrane protein [Algoriphagus sp. PR1]
gi|126576933|gb|EAZ81181.1| cytoplasmic membrane protein [Algoriphagus sp. PR1]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G+ +TS F H D H++ NM YFFG + + L ++ L GG ++ +
Sbjct: 40 QGQWDRFVTSGFIHRDYMHLLFNMFTFYFFGGFVEQFLAYKFGL------GFGGLIYIVF 93
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
Y + +S + D S ALGASG A + I + P + + + +P F+L
Sbjct: 94 YILGIVLSDIPTYLKNQDHSYYRALGASGGTAATVFASIIIMPLSDICLFGILCLPGFIL 153
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G + +R G+ I+ AHL GA
Sbjct: 154 GGLFLIYSYVRGKNGDDAINHDAHLYGA 181
>gi|84687870|ref|ZP_01015738.1| rhomboid family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664125|gb|EAQ10621.1| rhomboid family protein [Rhodobacterales bacterium HTCC2654]
Length = 244
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 118 LRQYGSSE----VVYGLIIANTAVFMLWRIADPKFMANNF---TISLDNFLSGR-LHTLI 169
+R + SE V Y L+ N VF+ D + + F + + SG L TLI
Sbjct: 4 IRDHNPSERTPFVTYILVAINVVVFLGQLGLDDRALGEAFWTWGVVPERITSGNGLETLI 63
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
TS F H HI NM+ L+ FG ++ LG L Y+A +G ++F +
Sbjct: 64 TSQFLHSGFWHIAGNMLFLWIFGDNLEDELGHFGFLVFYLASGVGAAMFQI--------- 114
Query: 230 SKRQGMWVVDPSR-TPALGASGAVNAIMLLDIFLNPKA 266
+ DPS P +GASGA+ +M + L PKA
Sbjct: 115 -------LPDPSSGIPMVGASGAIAGVMGGYLLLFPKA 145
>gi|162312279|ref|NP_596266.2| mitochondrial rhomboid protease (predicted) [Schizosaccharomyces
pombe 972h-]
gi|3219925|sp|O14364.1|YOHB_SCHPO RecName: Full=Uncharacterized protein C13E7.11
gi|157310447|emb|CAB89886.2| mitochondrial rhomboid protease (predicted) [Schizosaccharomyces
pombe]
Length = 298
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNF--TISLDNFLSGRLHTLITSAFS 174
+ Q S +V +I N VF LWR P+F N F ++ N + + ++I SAFS
Sbjct: 71 IPQTSSRSLVLSIIGINVGVFALWR--APRFSHLNRFLQKYAVMNPIFINMPSMIVSAFS 128
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H H++ NM+ Y F +I G + Y++ + +V L++H L +K
Sbjct: 129 HQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHR-LRFGTK--- 184
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGVFLIGK---D 289
V P +LGASGA+ AI + P A++ F FIP+ +GV L+G D
Sbjct: 185 ---VTPG---SLGASGAIYAIAAATSYFFPNASVSIIFLPFIPIK---IGVALLGLMAFD 235
Query: 290 MLRII-EGNSN------ISGSAHLGGA 309
+I G S+ I +AHLGG
Sbjct: 236 AWGLISRGFSSFANFTLIDHAAHLGGG 262
>gi|149377602|ref|ZP_01895341.1| uncharacterized membrane protein [Marinobacter algicola DG893]
gi|149358144|gb|EDM46627.1| uncharacterized membrane protein [Marinobacter algicola DG893]
Length = 482
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYH 223
L+TLIT F H HI+ N++ L+ G ++ + LGP +LL + GA+ G VF
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLVFLFLLGFTVEKALGPGRFLLAYLLCGALSGVVF----T 210
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV------- 276
AF +M S P +GASG+++ +M + + + + F +F+ V
Sbjct: 211 AF-SMG-----------SHIPLVGASGSISGLMGMYVAIYGLQKIRFFYFVGVYFNYFRA 258
Query: 277 PAFLLGVFLIGKDMLRI-IEGNSNISGSAHLGG-AAVAALAW 316
PA + +GK++ G + I+ AH GG A A + W
Sbjct: 259 PALAILPVWLGKEIYDYWFAGATGIAYMAHAGGLVAGAGMVW 300
>gi|372223812|ref|ZP_09502233.1| putative transmembrane rhomboid family protein [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 289
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTI--------SLDNFLSGRLHTLITS 171
QY + LI N A+F++ +A F A+ + +F+ + ++IT
Sbjct: 9 QYARLSIAEKLIAINVAIFIVSGLAMALFGASEAAVMGWFQLPKEFGDFII-QPWSIITY 67
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAFLAMSS 230
+F H HI NMI L+F G + L +Y G I G +F+L+ Y+ F A+ +
Sbjct: 68 SFFHAGFGHIFWNMIMLWFASRIFLNLFGDKRYLTVYFLGVITGGLFFLLSYNVFPALLN 127
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM 290
S T +GAS V A++L P + FF V + +G F + D+
Sbjct: 128 ----------SNTALVGASAGVTAVLLFVCSYIPNQDVRVIFF-NVKLWHVGAFFVLVDL 176
Query: 291 LRIIEGNSNISGS-AHLGGA 309
++I G NI G AHLGGA
Sbjct: 177 IQIPYG-GNIGGRLAHLGGA 195
>gi|307719555|ref|YP_003875087.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533280|gb|ADN02814.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 231
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 37/226 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIA---DPKFMANNFTISLDNFLS----GRLHTLIT 170
+R + V +GLI+ N VF LW + +F+ + + + G IT
Sbjct: 8 VRSWSFPWVNWGLIVTNVLVF-LWMAGLGPEAEFVVGRWGLVPARVVGSGHPGVFVQFIT 66
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
+ F H H+ SNM+ LY FG ++ LG L Y+ I SV ++
Sbjct: 67 AMFLHGGWAHLFSNMLALYIFGDNVEDRLGSVRYLAFYLLSGIAASVTHIA--------- 117
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIPVPAFLLGVFLIG 287
+ S P +GASGA++ ++ + + P+A TL FF+P+ + +F IG
Sbjct: 118 ------LFPDSPVPMVGASGAISGVLAAYVLMFPRARVITLIPLFFLPMFVEIPALFYIG 171
Query: 288 KDML--------RIIEGNSNISGS---AHLGGAAVAALAWARIRRR 322
L I+ G G AH+GG AL R R
Sbjct: 172 GWFLSQLLNGFATIVTGVGAFGGVAWWAHVGGFVAGALMLPAFRAR 217
>gi|195119947|ref|XP_002004490.1| GI19585 [Drosophila mojavensis]
gi|193909558|gb|EDW08425.1| GI19585 [Drosophila mojavensis]
Length = 356
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
+++ N F LWR+ M N + + R+ + S FSH V HI +NM
Sbjct: 156 ILVCNLLAFGLWRVPS---MRNMMMTYFTSNPAARIVCWPMFLSTFSHYSVMHIFANMYV 212
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
L+ F + ++G E + +Y++ + S+ ++Y A +++ GM +LG
Sbjct: 213 LHSFSNAAVLSMGKEQFMAVYLSAGVFSSLMSVLYKA----GTRQPGM---------SLG 259
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSA 304
ASGA+ ++ P L F+P F G ++G D + G +A
Sbjct: 260 ASGAIMTVLAYVCAQYPDTQLSI-LFLPTVTFSAGAAIKVIMGIDFAGCVMGWKFFDHAA 318
Query: 305 HLGGA 309
HLGGA
Sbjct: 319 HLGGA 323
>gi|21226784|ref|NP_632706.1| hypothetical protein MM_0682 [Methanosarcina mazei Go1]
gi|452209269|ref|YP_007489383.1| rhomboid family serine protease [Methanosarcina mazei Tuc01]
gi|20905079|gb|AAM30378.1| integral membrane protein [Methanosarcina mazei Go1]
gi|452099171|gb|AGF96111.1| rhomboid family serine protease [Methanosarcina mazei Tuc01]
Length = 222
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL+T F H + H+ NMI LYFFG ++ R +G + LL ++ I ++ Y FL
Sbjct: 67 TLVTYIFLHAGLGHLFFNMIVLYFFGTALERKVGNKQLLGIFFTAGILSAIGY----TFL 122
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV----PAFLLG 282
+ + D P +GASGA+ + L P +Y +F+P+ L
Sbjct: 123 SRP-------IFDIYPGPMVGASGAIYGVFAALTVLEPNLRVYV-YFVPMRLKHALLLFA 174
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
VF D L ++ I+ +AHL G V RI+R
Sbjct: 175 VF----DFL-MVNSTDMIAHTAHLSGLFVGLYMGYRIKR 208
>gi|379731354|ref|YP_005323550.1| rhomboid family protein [Saprospira grandis str. Lewin]
gi|378576965|gb|AFC25966.1| rhomboid family protein [Saprospira grandis str. Lewin]
Length = 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAFLAM 228
+S H D H+ NM LY FG + + + G I G + YL+ Y + LA
Sbjct: 59 SSGLIHADGMHLGLNMFVLYQFGGQVEQVFSLVF-------GNIWGHILYLLLYVSALAA 111
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
SS D ALGASGAV+A++L + P +TL IP PA + + +
Sbjct: 112 SSFYSFEKHKDNYGYNALGASGAVSAVLLAYVLFAPTSTLLLFLIIPTPAIVAALGYLAY 171
Query: 289 DMLRIIEGNSNISGSAHLGGA 309
GN NI AH GA
Sbjct: 172 SHYMSKNGNDNIGHDAHFWGA 192
>gi|392954466|ref|ZP_10320017.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
gi|391857123|gb|EIT67654.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
Length = 189
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
+ V Y L+ N VF L ++ DP+ + + +L SG +IT AF H V H+
Sbjct: 2 TPVTYLLLGINIVVFGL-QLQDPQSLLPGY--ALWPLGSGFAPWQIITCAFLHGSVGHLA 58
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
+NM GL+ FG + R +G + LYMA + S+ A LA++S
Sbjct: 59 ANMFGLWMFGRDVEREIGSARFVNLYMASVVTASL------AQLAVTSAAA-------EA 105
Query: 243 TPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEG-NSNI 300
P +GASG + ++ L P + FF +P+PA VF+ + + G I
Sbjct: 106 QPTVGASGGLFGVLGAFALLFPSRRVMLIFFPVPLPA---PVFVTLYALFELYTGVTGTI 162
Query: 301 SGSAH 305
+G AH
Sbjct: 163 NGVAH 167
>gi|403365427|gb|EJY82497.1| hypothetical protein OXYTRI_19890 [Oxytricha trifallax]
Length = 243
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 129 GLIIA--NT---AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
G++IA NT ++++W NNFT S N GRLHT TS F+H+ +
Sbjct: 66 GILIAALNTFCYLMYLMWPRHQMYSYLNNFTFSKFNLNQGRLHTFFTSHFTHMSFLSYLL 125
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
+ + +Y F ++ GP +++K + GS + H GM
Sbjct: 126 DTVIIYLFCQNLSMMFGPVFVVKNILLSMFMGSFLLFLQH------QSSGGML------R 173
Query: 244 PALGASGAVNAIMLLDIFLNPKATLY-FDFFIPVPAFLLGVFLIGKDML 291
P G+ + ++ IF NP A+ Y I +PA+ + L+G D L
Sbjct: 174 PYYGSDAILRGLIFTIIFQNPSASFYLLPLPIQIPAWAIAAVLLGLDFL 222
>gi|288931169|ref|YP_003435229.1| rhomboid family protein [Ferroglobus placidus DSM 10642]
gi|288893417|gb|ADC64954.1| Rhomboid family protein [Ferroglobus placidus DSM 10642]
Length = 260
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 20/196 (10%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L QYG + + G+I T +F L + P+ M NF N L+TS F H
Sbjct: 68 LSQYGYNNIFLGII---TLMFFL-SLVFPQIM--NFLALYPNKFYFMPWQLVTSIFLHGS 121
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+H + N I L FFG + R LG + L+++ I G++FY+++
Sbjct: 122 FDHYLVNAIVLLFFGGELERRLGSKRYLEIFFLSGIVGNIFYILFS-------------F 168
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI-IEG 296
+ PA+GASGA+ IM + P+ + F IPV + ++L +
Sbjct: 169 ATNNFAPAVGASGALYGIMGALALIAPEIRVLLFFVIPVDIKTAILLFAAYNILMLPFTA 228
Query: 297 NSNISGSAHLGGAAVA 312
+ ++ AHLGG V
Sbjct: 229 FTGVAYIAHLGGLLVG 244
>gi|238485031|ref|XP_002373754.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
gi|220701804|gb|EED58142.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 345 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 402
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF---LAMSS 230
SH V H+ NM+ L+F G + +G L LY+A + GS L + L ++
Sbjct: 403 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGSFTSLTVNILKGNLGLT- 461
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIM 256
ALGASGA++A++
Sbjct: 462 --------------ALGASGAISALV 473
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N +F L ++A P + + G L+ L+TSAF H V HI NM
Sbjct: 79 VTYVLIAVNLVMFAL-QMASPN-LERALGLWPPAAADGELYRLVTSAFLHFSVTHIAFNM 136
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S
Sbjct: 137 LALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTFNALTAGAS 183
>gi|396586115|ref|ZP_10486089.1| peptidase, S54 family [Actinomyces sp. ICM47]
gi|395546456|gb|EJG14095.1| peptidase, S54 family [Actinomyces sp. ICM47]
Length = 241
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 47/223 (21%)
Query: 115 RSWLRQ------YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN-FLSGRLHT 167
R W+RQ G+ V Y A A+ +L +A F + +++L FL R T
Sbjct: 8 RGWVRQASRAAQMGAPVVTY----AMMAICILMYLATWVFPSLKSSLALVPLFLMSRPWT 63
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T AF H + HI+ NM+ LY+ G +I LG L +Y+ A+GGS F L +
Sbjct: 64 ILTGAFLHGGLLHILFNMLSLYWVGRAIEPVLGWWRFLTVYLLSALGGSAFILAWC---- 119
Query: 228 MSSKRQGMWVVDPSR--TPALGASGAV----NAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
++ PS +GASGAV A+ +L T P+ LL
Sbjct: 120 ---------LIQPSELLVGTVGASGAVFGLFGAVFVLQRLGGADTT-------PILT-LL 162
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA-W--ARIRR 321
G+ L+ + S IS AH+GGA V A W AR+ R
Sbjct: 163 GINLVYGFL------ASGISWQAHIGGAVVGVAATWVLARLAR 199
>gi|225678271|gb|EEH16555.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 585
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 363 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 420
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G + + LG L LY++ + S+ L H S
Sbjct: 421 AANMLILWFVGTRLHQELGRGDFLSLYLSSGVFASLTSLTVHVLQNKLS----------- 469
Query: 242 RTPALGASGAVNAIML--LDIFLNPKATLYF 270
+LGASGA+ ++ I N K T+ F
Sbjct: 470 -VTSLGASGAIAGLVAAWCIIHSNDKLTIAF 499
>gi|319954281|ref|YP_004165548.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422941|gb|ADV50050.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 251
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+E V LII N +F + +A M F + + R+ +IT F H HI+
Sbjct: 5 TEAVKHLIIINV-LFFVATLAIGDQMYEWFALWFPKNENFRIWQVITHMFMHGGPAHILF 63
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAFLAMSSK--------RQ 233
NM GL+ FG S+ LG + L LY + +G ++F L Y+ +L + S+ Q
Sbjct: 64 NMFGLWMFGSSVEEYLGKKQFLFLYFSAGLGAALFQLGFYYYEYLPIHSELINLGLTSDQ 123
Query: 234 GMWVVDPSRT-------------------------PALGASGAVNAIMLLDIFLNPKATL 268
+ ++ +RT +GASG + ++ + P A L
Sbjct: 124 IVDMISTNRTIDGLSEVQVSKLQEAFPIYRNTYFASMVGASGCIMGVLAAFGVMKPNAEL 183
Query: 269 YFDFFIPVPA----FLLGVFLIGKDMLRIIEGNSNISGS-----AHLGGAAVA 312
F+P+P F+ G+ L+ D+ + G S S S AH+GGA V
Sbjct: 184 ML-MFLPIPIKAKYFIPGIILL--DLFSALSGKSYFSPSNTAFMAHVGGAVVG 233
>gi|299142060|ref|ZP_07035194.1| rhomboid family protein [Prevotella oris C735]
gi|298576522|gb|EFI48394.1| rhomboid family protein [Prevotella oris C735]
Length = 289
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 160 FLSGRLH--TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
FL+ H L+T F H ++EHI NM L+ FGM + GP L Y+ IG V
Sbjct: 17 FLASDFHFYQLVTYMFMHANLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGV 76
Query: 218 ---------FYLVYHAFL---AMSSKRQGMWVVDP--SRTPALGASGAVNAIMLLDIFLN 263
FY+ + + A+S + + P + +GASGAV AI+L +
Sbjct: 77 FQEAAQFVSFYMTVSSQVPSFALSQFPEIAHQLSPMLNNWTTVGASGAVYAILLAFGMIF 136
Query: 264 PKATLYFDFFIPVPAFLLGVFLI----GKDML-RIIEGNSNISGSAHLGGAAVA 312
P L F IP+P + + + G ++ + N++ AHLGG V
Sbjct: 137 PNEKL---FIIPIPVPIKAKWFVMIYAGIELFAAMATTGDNVAHLAHLGGMVVG 187
>gi|374850826|dbj|BAL53805.1| rhomboid family protein [uncultured planctomycete]
Length = 221
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNF-----------TISLDN---FLSGRLHTLITSA 172
++ LI ANT VF L + P+ + F T+ D+ L L ITS
Sbjct: 1 MWALIAANTLVFFLEQTLTPRELEKLFRLCGIVPAATTTVLRDHVWALLPSELLRFITSL 60
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
F H H + NM LY FG ++ +GP +LL + G + G + L +
Sbjct: 61 FLHGGWLHFLGNMWTLYLFGDNVEDRMGPVRFLLFYLLCGVLAGWIHVLAHPT------- 113
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-------YFDFFIPVPAFLLGVF 284
S P +GASGA+ ++ + L P AT+ F +F+ +PA VF
Sbjct: 114 ---------SLVPTIGASGAIAGVLAAYLLLYPYATVITLIPLFIFPWFVELPAV---VF 161
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
+ + ++ EG ++ GG A WA I
Sbjct: 162 IGLWYLTQVFEGTLALAVDVAYGGVA----WWAHI 192
>gi|328770837|gb|EGF80878.1| hypothetical protein BATDEDRAFT_11066 [Batrachochytrium
dendrobatidis JAM81]
Length = 220
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 127 VYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+ LI N AVF LWR+ FM NF + + S R++T++TSAFS V H+ NM
Sbjct: 8 TWTLIACNLAVFFLWRLPPLGHFMNRNF---VHHSHSRRIYTMVTSAFSQKGVAHLAFNM 64
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L F +S+ YL + AI FYL A ++ S+ + + +
Sbjct: 65 FALNSFFISM------HYLHPMTHQEAIA---FYLSTAALSSLGSQVFMRLSKNTTMRSS 115
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG---KDMLRIIEGNSNISG 302
LG+SG V AI+ + P++ FIP LG + G D+ ++
Sbjct: 116 LGSSGVVWAIVAFVAYQRPESQAGI-IFIPGVEMPLGTLVSGFILLDLAGLLMKWKQFDH 174
Query: 303 SAHLGGA 309
+AHL GA
Sbjct: 175 AAHLSGA 181
>gi|323453274|gb|EGB09146.1| hypothetical protein AURANDRAFT_63657 [Aureococcus anophagefferens]
Length = 1186
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 21/148 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T H +H+ NM+ L G + + G LLK+++ A+ +V ++
Sbjct: 908 LLTHTVGHTGYDHLKGNMVNLLLVGPASEKEFGSMNLLKIFLYVAVSSAVAHM------- 960
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ P+ LGASG V A++LL+ L+ + + +P+ L +
Sbjct: 961 ---------ALGPANGYQLGASGVVFALILLNSLLSAHSGV-----VPLTFLLTAGLWVS 1006
Query: 288 KDMLRIIEGNSNISGSAHLGGAAVAALA 315
++ R +S AHL GA V LA
Sbjct: 1007 DEVFRFFFARDQVSHVAHLSGAVVGTLA 1034
>gi|257053517|ref|YP_003131350.1| Rhomboid family protein [Halorhabdus utahensis DSM 12940]
gi|256692280|gb|ACV12617.1| Rhomboid family protein [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGG--SVFYLVYH 223
T TS SH HI N I ++FFG + +G ++ L +GA+ G V +Y
Sbjct: 144 TWFTSVLSHGGFAHIAFNSIVIFFFGRLVEDYIGSRDFTLLFLSSGALAGLGQVLIQLYQ 203
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+ ++ V +GASGA AIM + LNP +Y F PVP +L+ +
Sbjct: 204 GLPSAAA-------VGYFPGGVVGASGAAIAIMGVLTILNPSLRVYVYFIFPVPIWLVTI 256
Query: 284 FLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRRR 322
L+ ++L + G ++ +AHL G A+ +R R
Sbjct: 257 GLVAMNVLGMFGAGGQGVANAAHLIGLAIGLAYGQHVRDR 296
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLD-----NFLSGRLHTLITSAFSHIDV 178
S + YGLI+ N ++ L I + I L N + G H LITS F H++
Sbjct: 156 SPITYGLILLNVIIWALINILHHNEFTDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
EHI+ NM+ L+ FG + LG + +YM I G++ L +
Sbjct: 216 EHILFNMLSLFIFGKLLESILGSWRMFGVYMLSGIIGNLVTLAF---------------- 259
Query: 239 DPSRTPALGASGAV 252
T +LGASGA+
Sbjct: 260 -SPDTFSLGASGAI 272
>gi|195401434|ref|XP_002059318.1| GJ18325 [Drosophila virilis]
gi|194142324|gb|EDW58730.1| GJ18325 [Drosophila virilis]
Length = 353
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLIT-----SAFSHIDVEHIVSN 184
+++ N F LWR+ + I + F S ++ S FSH V HI +N
Sbjct: 153 ILVCNLLAFGLWRLPAMR------NIMMTYFTSNPAARIVCWPMFLSTFSHYSVMHIFAN 206
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
M L+ F + ++G E + +Y++ + S+ ++Y A +++ GM
Sbjct: 207 MYVLHSFSNAAVLSMGKEQFMAVYLSAGVFSSLMSILYKA----GTRQPGM--------- 253
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNIS 301
+LGASGA+ ++ P L F+P F G ++G D + G
Sbjct: 254 SLGASGAIMTVLAYVCAQYPDTQLSI-LFLPTVTFSAGAAIKVIMGIDFAGCVMGWKFFD 312
Query: 302 GSAHLGGA 309
+AHLGGA
Sbjct: 313 HAAHLGGA 320
>gi|195333572|ref|XP_002033464.1| GM20394 [Drosophila sechellia]
gi|195582585|ref|XP_002081107.1| GD25869 [Drosophila simulans]
gi|194125434|gb|EDW47477.1| GM20394 [Drosophila sechellia]
gi|194193116|gb|EDX06692.1| GD25869 [Drosophila simulans]
Length = 351
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
+++ N F +WR+ P + T N + + + S FSH H+ +NM +
Sbjct: 151 ILLCNLVAFAMWRV--PALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVM 208
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F + +LG E L +Y++ + S+ ++Y A ++ + GM +LGA
Sbjct: 209 HSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKA----ATSQAGM---------SLGA 255
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSAH 305
SGA+ ++ P L F+P F G L+G D ++ G +AH
Sbjct: 256 SGAIMTLLAYVCTQYPDTQLSI-LFLPALTFSAGAGIKVLMGIDFAGVMLGWKFFDHAAH 314
Query: 306 LGGA 309
LGGA
Sbjct: 315 LGGA 318
>gi|148657204|ref|YP_001277409.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569314|gb|ABQ91459.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 231
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 37/200 (18%)
Query: 130 LIIANTAVFMLWRIA---DPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDVEHIV 182
LIIAN A F++ +A D +++ F + L+ ++ TL +S F H H++
Sbjct: 20 LIIANVAFFLI-EVALGTDAEWLVATFGVVPARLLANPGPDQIATLFSSMFLHGGWSHLL 78
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
SNM+ L+ FG ++ +G GG YL ++ + + ++ SR
Sbjct: 79 SNMLALFIFGDNVEDRMG-------------GGR--YLTFYIICGLIAALTHVFFNPDSR 123
Query: 243 TPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPAFL-LGVFLIGKDM---L 291
P +GASGA++ ++ + L P A TL FF+P +PA + LGV+ + + + L
Sbjct: 124 IPTIGASGAISGVLGAYLVLYPTARVITLIPIFFLPWFVEIPAVIYLGVWFLSQLLNGTL 183
Query: 292 RIIEGNSNISGS---AHLGG 308
II G G AH GG
Sbjct: 184 AIIIGAQGFGGVAWWAHAGG 203
>gi|408492452|ref|YP_006868821.1| membrane protein, rhomboid family [Psychroflexus torquis ATCC
700755]
gi|408469727|gb|AFU70071.1| membrane protein, rhomboid family [Psychroflexus torquis ATCC
700755]
Length = 295
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAF 225
T+IT AF H + H++SNM+ LYF G +L LY+ GAI G++ Y L Y+
Sbjct: 67 TIITYAFMHSGIFHVLSNMLILYFSGKFFLTYFSGRRMLNLYLLGAICGALVYALSYNLL 126
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A S R+ +GAS +V A ++ P + F + + + FL
Sbjct: 127 PAFSG---------TGRSYLIGASASVMATLVATATQAPNLQVRLFFLGNLKLWWIAAFL 177
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ D+++I N AHLGGA + L ++++
Sbjct: 178 VVLDVVQIPLSNPG-GHLAHLGGAFIGYLYIVQLKK 212
>gi|430742280|ref|YP_007201409.1| hypothetical protein Sinac_1327 [Singulisphaera acidiphila DSM
18658]
gi|430014000|gb|AGA25714.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+ TS F H H+ NM+ L+ FG ++ LG L +Y+A G+V +
Sbjct: 90 TIFTSMFLHASPLHLAGNMLYLWIFGDNVEEVLGTIRYLIVYLACGFVGTVLQ------I 143
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIPVPA-FLLG 282
AM+ S P LGASGA+ IM + + P+ L F F +PA +++G
Sbjct: 144 AMNQD---------SLIPTLGASGAIAGIMGMYVVWFPQNQVRVLVFRFITQMPALYVIG 194
Query: 283 VFLIGKDMLRIIEG---------NSNISGSAHLGGAAVAAL 314
+++ L+IIEG ++ AH+GGAA L
Sbjct: 195 FWIV----LQIIEGVGSAGKIGETGGVAYLAHIGGAATGIL 231
>gi|67521830|ref|XP_658976.1| hypothetical protein AN1372.2 [Aspergillus nidulans FGSC A4]
gi|40746399|gb|EAA65555.1| hypothetical protein AN1372.2 [Aspergillus nidulans FGSC A4]
Length = 448
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N +F+LWR P + + N + IS+ + R+ L+ + F
Sbjct: 227 RMWPSLPPAAATVSAIIGLNVGIFVLWRAWPPAWRLLNRYFISVAAY--PRVFGLVGNVF 284
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ NM L+FFG + +G L LY+A + GS L H R
Sbjct: 285 SHQHLMHLGINMSVLWFFGTKLHDEIGRGNFLALYIASGVFGSFASLTMHVL------RN 338
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-------IPVPAFLLGVFLI 286
+++ +LGAS A+ ++ L+P F + PA++ L+
Sbjct: 339 SLFLT------SLGASSAIAGVLAASALLHPGDKWTIAFLPREWQESLSAPAWMFFAGLV 392
Query: 287 GKDMLRIIEGN--SNISGSAHLGGAAVAAL 314
D++ + + AHLGG A+
Sbjct: 393 TFDIVGAVMKRHVPKLDYYAHLGGYLTGAV 422
>gi|94971691|ref|YP_593739.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94553741|gb|ABF43665.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 285
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N L G ++ L+T +F H H+ NM+GL+ FG I G L Y +GG
Sbjct: 56 NVLHGHVYELVTYSFLHAGGMHLFGNMLGLWMFGSQIEGDFGTRRFLSFYFWCVVGG--- 112
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP- 277
A ++ G+ + P P +GAS V I++ L+ +Y +P P
Sbjct: 113 -----ALTTVAVSYTGILGISP-LLPTIGASAGVYGILIAFGVLHADQEIY---MLPFPF 163
Query: 278 ----AFLLGVFLIGKDMLRIIEGN----SNISGSAHLGGAAVAALAWARIRRRG 323
+L+G+ ++ + E N ++I+ +AHLGG + RRG
Sbjct: 164 KVKAKYLVGILVVVTLAFALSESNGTSGASIAYAAHLGGLIFGYIYIKAFARRG 217
>gi|198274050|ref|ZP_03206582.1| hypothetical protein BACPLE_00187 [Bacteroides plebeius DSM 17135]
gi|198273128|gb|EDY97397.1| peptidase, S54 family [Bacteroides plebeius DSM 17135]
Length = 224
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 148 FMANNFTISLDNFL--------SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
F+A + + ++N L L LIT F H + HI NM ++ FG + +
Sbjct: 23 FVARKYGVDIENMLGLHFFLASDFNLGQLITYMFMHANFSHIFFNMFAVWMFGRVLEQVW 82
Query: 200 GPEYLLKLYMAGAIGGSVFYLV--YHAFLAM----SSKRQGMWVVDP----SRTPALGAS 249
GP+ L Y+ IG + V Y +L + S G+ ++ ++ +GAS
Sbjct: 83 GPKRFLTYYLICGIGAGLIQEVVQYVEYLTVWSNYDSVNTGLGIIPMDAFLNQLTTVGAS 142
Query: 250 GAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG---NSNISGSAHL 306
GAV I+L L P + + F F IP+P F+IG +L ++ G N ++ AHL
Sbjct: 143 GAVYGILLAFGMLFPNSQM-FVFPIPMP-IKAKYFVIGYAVLELLLGLGSNDGVAHFAHL 200
Query: 307 GGAAVAALAWARIRRR 322
GG + R++
Sbjct: 201 GGMLFGLILIVYWRKK 216
>gi|406953471|gb|EKD82714.1| hypothetical protein ACD_39C01138G0001, partial [uncultured
bacterium]
Length = 386
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 32/198 (16%)
Query: 127 VYGLIIANTAVFMLWRIADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
+Y LI+ N A+++ P FM + LD L+G+LHTL+TS F H + H+
Sbjct: 203 MYLLIMLNIAIYIHTGSLVPDKFMPFMREFGAVPLD-VLAGKLHTLVTSIFLHSNFWHLF 261
Query: 183 SNMIGLYFFGMSI-------GRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQG 234
+NM L+ FG ++ G+T GP + Y+ G + G + H LA
Sbjct: 262 ANMYVLFVFGDNVYDLFNDHGKTRGPLTFVVFYLIVGVLSGLI-----HIILAAGHPVT- 315
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY-----FDFFIPVPAFLLGVFLIGKD 289
S P +GASGAV+ IM PK +Y + F +P+ + LG +++
Sbjct: 316 ------STVPVVGASGAVSGIMAAYWRAFPKTRIYQIIFWYPFKLPIWLY-LGFWILFNI 368
Query: 290 MLRIIEGN-SNISGSAHL 306
L + G+ + +S AHL
Sbjct: 369 ALGLFAGSGARVSWQAHL 386
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 131 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 190
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S
Sbjct: 191 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAAS-------- 242
Query: 238 VDPSRTPALGASGAV------NAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDML 291
LGASGA+ I++L + + + P A L+ + LI
Sbjct: 243 --------LGASGAIFGLFGATGILVLRVRADVR---------PFVALLV-INLI----- 279
Query: 292 RIIEGNSNISGSAHLGGAAVAAL 314
I G SNI+ AH+GG V L
Sbjct: 280 -ITFGWSNIAWQAHIGGLVVGVL 301
>gi|70995032|ref|XP_752282.1| rhomboid family protein [Aspergillus fumigatus Af293]
gi|66849917|gb|EAL90244.1| rhomboid family protein, putative [Aspergillus fumigatus Af293]
gi|159131038|gb|EDP56151.1| rhomboid family protein, putative [Aspergillus fumigatus A1163]
Length = 568
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W ++ + ++ AN +F+LW+ M N + IS+ +++ + FS
Sbjct: 349 RMWPDMPPAAATAFAIMGANLTIFLLWKFPPAWRMLNRYFISVP--FKPHALSIVGNVFS 406
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H +H+ NM+ L+F G + +G L L+MA GS+ L H G
Sbjct: 407 HQQFKHMSLNMLMLWFIGTKLHDDIGRGNFLGLFMAAGAFGSMVSLTGHVL-------TG 459
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP-----VPAFLLGVFLIGKD 289
++ +LGASGA++ I+ L+ + FF+P V + V L G
Sbjct: 460 QLMIT-----SLGASGAISGIVAAWCLLHSQEKFTI-FFLPREWQEVISAKGWVLLTGFV 513
Query: 290 MLRIIEGNS-----NISGSAHLGG---AAVAALAW 316
I S + AHLGG AV ALAW
Sbjct: 514 AFEIFNLVSPFRVMKLDHFAHLGGYLIGAVWALAW 548
>gi|260432921|ref|ZP_05786892.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416749|gb|EEX10008.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 247
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 35/208 (16%)
Query: 123 SSEVVYGLIIANTAVFMLWR--IADPKFMAN---NFTISLDNFLSG-RLHTLITSAFSHI 176
+ VVY LI AN +F+ + + D + + ++ I G L TL+TS F H
Sbjct: 13 TPYVVYALIAANVLIFLSYVGFMDDARLINRFYFDYAIIPARISDGVALETLVTSMFLHG 72
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
H++ NM+ L+ FG ++ +G L YM IG + +++
Sbjct: 73 GWMHLIGNMLFLWIFGDNLEDEMGHLPFLLFYMVAGIGAGLVHII--------------- 117
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAF-LLGVFLIG 287
S P +GASGA+ A+M + + P+A +Y F +PAF +LGV+L G
Sbjct: 118 TAPGSLVPTIGASGAIAAVMGGYLLMFPRARVDILLILVVYVRVFT-IPAFVMLGVWL-G 175
Query: 288 KDMLRIIEGNSNISGS---AHLGGAAVA 312
L + N + G AH GG +
Sbjct: 176 MQFLGSLASNPDAGGVAYWAHTGGFVIG 203
>gi|86138617|ref|ZP_01057190.1| rhomboid family protein [Roseobacter sp. MED193]
gi|85824677|gb|EAQ44879.1| rhomboid family protein [Roseobacter sp. MED193]
Length = 261
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 39/207 (18%)
Query: 126 VVYGLIIANTAVFMLWR--IADPKFMAN---NFTISLDNFLSGR-LHTLITSAFSHIDVE 179
VVY LI AN ++++ +DP+ + + I + G +L TSAF H +
Sbjct: 16 VVYLLITANVLAYVMYAGLSSDPRALMQFYQAYAIIPAEIVGGENASSLFTSAFIHGGLM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G L Y+A +G V +++
Sbjct: 76 HLGGNMLFLWIFGDNLEDEMGHLPFLAFYLACGLGAGVIHVL---------------AAP 120
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA-------TLYFDFFIPVPA-FLLGVFLIGKDML 291
S+ P +GASGA+ +M + L PKA + F I VPA +LG++L+ L
Sbjct: 121 TSQVPTIGASGAIAGVMGGYLLLFPKARVDILLILIVFFRVITVPASLMLGLWLV----L 176
Query: 292 RIIEG---NSNISGS---AHLGGAAVA 312
+I G N N G AH GG AV
Sbjct: 177 QIFGGFGSNPNEGGVAYWAHAGGFAVG 203
>gi|402831710|ref|ZP_10880387.1| peptidase, S54 family [Capnocytophaga sp. CM59]
gi|402281097|gb|EJU29789.1| peptidase, S54 family [Capnocytophaga sp. CM59]
Length = 209
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 23/156 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LI+S F H EH++ NMI L+FF I +G + +Y+ + G++F L +
Sbjct: 46 LISSGFLHAGWEHLIFNMISLFFFHKIIIEEMGAGVFMLIYLGAIVLGNLFCLYIY---- 101
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ Q + A+GASG V+ I+ I L P+ + F +P +L G G
Sbjct: 102 ---RHQPYY-------SAIGASGGVSGIIFAAIALVPQLRVNF-----IPGWLFGTIYFG 146
Query: 288 KDMLRII---EGNSNISGSAHLGGAAVAALAWARIR 320
+ +++ EG+ N+ +AHLGGA + A ++
Sbjct: 147 YSVYQMLNPREGD-NVGHAAHLGGAIFGIIVIALLQ 181
>gi|345866795|ref|ZP_08818816.1| rhomboid family protein [Bizionia argentinensis JUB59]
gi|344048715|gb|EGV44318.1| rhomboid family protein [Bizionia argentinensis JUB59]
Length = 296
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
++I+ AF H D H NMI LYF G + L +Y GAI G V +L+ Y+ F
Sbjct: 61 SVISYAFVHYDFWHFFFNMIWLYFIGGMFTNMFSTKMGLNIYFLGAISGGVLFLLGYNLF 120
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
++ S T +GAS A+ A+++ P + F F + +G +
Sbjct: 121 PSLFQ----------SPTRLVGASAAIRALLIFLCAYMPSMDVKF-FTFNFKLWYIGAAI 169
Query: 286 IGKDMLRIIEG-----NSNISGS-AHLGGAAVAAL 314
+ D+L +I G N N G+ AHLGGA + L
Sbjct: 170 VAFDVLGVITGINDPINGNAGGNLAHLGGAILGYL 204
>gi|389759371|ref|ZP_10191765.1| hypothetical protein UU5_18447 [Rhodanobacter sp. 115]
gi|388430478|gb|EIL87642.1| hypothetical protein UU5_18447 [Rhodanobacter sp. 115]
Length = 221
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 20/150 (13%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R+ ++T AF H HI+ NM LY FG +I +T G + + Y AI ++ L
Sbjct: 62 RIWQVVTYAFMHGGFTHILFNMFALYMFGGAIEQTFGARHFVIYYFVCAIVAALAQL--- 118
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLG 282
L + G + P +GASGA+ ++L L P+ + F +P+PA+L
Sbjct: 119 --LVVKYFTHGFY-------PTIGASGAIFGLLLAFGMLYPQEKVMLLFLPVPMPAWL-- 167
Query: 283 VFLIGKDMLRIIEG----NSNISGSAHLGG 308
F+IG + + G + ++ AHLGG
Sbjct: 168 -FVIGYAAVELFMGVTGTEAGVAHFAHLGG 196
>gi|406673791|ref|ZP_11081009.1| hypothetical protein HMPREF9700_01551 [Bergeyella zoohelcum CCUG
30536]
gi|405585241|gb|EKB59074.1| hypothetical protein HMPREF9700_01551 [Bergeyella zoohelcum CCUG
30536]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+I++ F H D H+ NM LY F I T G L +Y+ I G++F L +
Sbjct: 44 MISAGFLHADFFHLFFNMYTLYIFSPIILSTFGTFSFLVIYLGSIIAGNLFCLYLYK--- 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV--PAFLLGVFL 285
D S A+GASG V+ ++ I L P L F IPV P F+ G+
Sbjct: 101 -----------DQSWYSAIGASGGVSGVLFASIALYPYLGL-MIFPIPVHIPGFVFGLLY 148
Query: 286 IGKDMLRIIE--GNSNISGSAHLGGAAVA 312
G + ++ NI +AH+GGA +
Sbjct: 149 FGYSVYMMLNPRQGDNIGHAAHIGGAVMG 177
>gi|83317564|ref|XP_731215.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23491183|gb|EAA22780.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADP-----------------------KFMANNFT 154
++ Y S V Y LI + V+ LW A P +FM F
Sbjct: 251 MQHYNKSPVTYSLIFLHFFVYFLWINAKPDNMSYSYFSPAPIKSHSFSLLTSEFMYKYFC 310
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 311 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGII 370
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY 269
S ++Y S + ++V LGASG++++I+ F++P +Y
Sbjct: 371 SSYIQILYQK--NSSYGYKNVYV--------LGASGSISSILATYTFIHPNHKIY 415
>gi|325285171|ref|YP_004260961.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324320625|gb|ADY28090.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 293
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKF----MANNFTI--SLDNFLSGRLHTLITSAF 173
QY + LI N +F+L I F + N F + ++ +F+ + +++T +F
Sbjct: 8 QYARLNIAEKLIAINVVIFLLNLILVNLFRLPNIVNWFNLPENIGDFIL-QPWSIVTYSF 66
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAFLAMSSKR 232
H HI NM+ LYFFG + + L +Y G I GG +F + Y+ A+ ++
Sbjct: 67 FHSGFGHIFWNMLMLYFFGRTFLNLFDAKKFLNVYFLGVIVGGFLFMIGYNTIPALLNQN 126
Query: 233 QGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLR 292
+ +GAS V AI++ P T+ I + + LGV ++ D+LR
Sbjct: 127 GVL----------IGASAGVTAILIYVCTYLPNQTVRL-LIIDLKLWHLGVIIVVLDLLR 175
Query: 293 IIEGNSNISGS-AHLGGAAVA 312
+ G N+ G +HLGGAA+
Sbjct: 176 LSNG-QNVGGMLSHLGGAALG 195
>gi|406876561|gb|EKD26088.1| hypothetical protein ACD_79C01375G0003 [uncultured bacterium]
Length = 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V+ L+ N +F+L K +N + N R + L+TS F H++ H+ N+
Sbjct: 12 VFTLVTINIVIFILM-----KLFSNELSFLFLNTSDVRWYQLLTSIFCHLEYSHLSGNLF 66
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
LY FG I G ++ Y+ IG ++F LV + G ++
Sbjct: 67 FLYIFGRLIEEQEGTMGVVVSYLICGIGANLFTLVLNF-------HSGYYI--------- 110
Query: 247 GASGAVNAIMLLDIFL--NPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
GASGA+ + + + + P+ T + FI P F+LG ++I + L+ + + NIS +
Sbjct: 111 GASGAIFGLFTISMLIKFKPRFTNIIEIFILTP-FVLG-YIITE--LKSLNNSDNISHES 166
Query: 305 HLGGAAVAALAWARIR 320
H+ G+ V L +R
Sbjct: 167 HIYGSIVGVLLIIGLR 182
>gi|302389193|ref|YP_003825014.1| rhomboid family protein [Thermosediminibacter oceani DSM 16646]
gi|302199821|gb|ADL07391.1| Rhomboid family protein [Thermosediminibacter oceani DSM 16646]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+S F G L+ ITS F H H++SNM L+ FG ++ +G L Y+
Sbjct: 54 TKLVVSGAPFSLGDLYPFITSIFLHGSTLHLISNMWILWLFGDNVEDRMGHIRFLLFYLL 113
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---T 267
+ VF+LV++ SR P +GASGA+ +M L P A T
Sbjct: 114 SGVIAGVFHLVFNPL---------------SRVPVVGASGAIAGVMGAYFVLFPSARIIT 158
Query: 268 LYFDFFIPVPAFL---LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
L FF+ VP F+ V+L + ++ G + +GGAAV+ +AW
Sbjct: 159 LVPTFFL-VPIFIQIPAVVYLFLWFLAQLYSGTV----LSVIGGAAVSGIAW 205
>gi|424841080|ref|ZP_18265705.1| putative membrane protein [Saprospira grandis DSM 2844]
gi|395319278|gb|EJF52199.1| putative membrane protein [Saprospira grandis DSM 2844]
Length = 223
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
+S H D H+ NM LY FG + E + L G ++ L+Y + LA S
Sbjct: 59 SSGLIHADGMHLGLNMFVLYQFGGQV------EQVFTLVFGNIWGHILYLLLYVSALAAS 112
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
S D ALGASGAV+A++L + P +TL IP PA + + +
Sbjct: 113 SFYSFEKHKDNYGYNALGASGAVSAVLLAYVLFAPTSTLLLFLVIPTPAIVAALGYLAYS 172
Query: 290 MLRIIEGNSNISGSAHLGGA 309
GN NI AH GA
Sbjct: 173 HYMSKNGNDNIGHDAHFWGA 192
>gi|256395229|ref|YP_003116793.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256361455|gb|ACU74952.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 252
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 41/227 (18%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN------------FLSGR---LHT 167
+S V +GLIIAN AVF+ IA + + +N L+G +
Sbjct: 4 TSVVTFGLIIANVAVFLSGPIAFAGVSPDAARKARENAYLYHYGAIPAQLLNGHGNPVWP 63
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ T+ F H H++ NM+ LY FG ++ LG + L Y+ IGG+
Sbjct: 64 VFTAMFVHAGWIHLLGNMLFLYIFGNNVEDVLGRLHFLAFYI---IGGA----------- 109
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLY----FDFFIP--VPAFL- 280
+S W + P +GASGA+ A++ ++L P+A + F +F+P VPA+L
Sbjct: 110 -ASTYAFAWANPTATGPLVGASGAIAAVLGAYVYLFPQARVTLLVPFLWFLPMRVPAWLV 168
Query: 281 LGVFLIGK----DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
LG + + + + G+++++ AH+ G + L A + RG
Sbjct: 169 LGFWFVVQLPEFQQTIGVAGSTDVAYFAHVSGFVLGLLYVALVIGRG 215
>gi|448309426|ref|ZP_21499287.1| rhomboid family protein [Natronorubrum bangense JCM 10635]
gi|445590731|gb|ELY44944.1| rhomboid family protein [Natronorubrum bangense JCM 10635]
Length = 320
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 138 FMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH---------IDVEHIVSNMIGL 188
F+ W I F +S +N L + T +TS F+H + + HI+ N I +
Sbjct: 106 FLAWLIGGWALHDTLFVLSSENPL--YIWTWVTSIFAHAPFFAQPGGVGIFHIIFNSIVI 163
Query: 189 YFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
+FFG + R +G ++ + ++GA+ G + +S+ + DPS LG
Sbjct: 164 FFFGPLVERYVGSRDFAVLFIVSGALAGL-------GQIGISAAQG-----DPSSV--LG 209
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
ASGA AIM + LNP T+Y F +PVP ++L
Sbjct: 210 ASGAALAIMGVITVLNPNLTVYLYFVLPVPIWIL 243
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 131 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 190
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S
Sbjct: 191 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAAS-------- 242
Query: 238 VDPSRTPALGASGAV------NAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDML 291
LGASGA+ I++L + + + P A L+ + LI
Sbjct: 243 --------LGASGAIFGLFGATGILVLRVRADVR---------PFVALLV-INLI----- 279
Query: 292 RIIEGNSNISGSAHLGGAAVAAL 314
I G SNI+ AH+GG V L
Sbjct: 280 -ITFGWSNIAWQAHIGGLVVGVL 301
>gi|374386915|ref|ZP_09644410.1| hypothetical protein HMPREF9449_02796 [Odoribacter laneus YIT
12061]
gi|373223150|gb|EHP45503.1| hypothetical protein HMPREF9449_02796 [Odoribacter laneus YIT
12061]
Length = 197
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL-----GPEYLLKLYMAGAIGGS 216
SG + LIT F H D+ H+ NM + FG I G L LY G I S
Sbjct: 37 SGEWYRLITHGFVHADMTHLFVNMFTYWSFGTYIESVFRYNDFGAWAYLGLYFGGMIVAS 96
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
++ L + + ++GASGAV A++ IFLNP + +P+
Sbjct: 97 LYDLFRYR--------------NEPYYSSIGASGAVAAVLFSCIFLNPWDKILLFAIVPI 142
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
P L GV + + +I+ +AH GA
Sbjct: 143 PGILFGVLYLVYCQYMAKQRGGHINHNAHFYGAV 176
>gi|380513121|ref|ZP_09856528.1| hypothetical protein XsacN4_17946 [Xanthomonas sacchari NCPPB 4393]
Length = 211
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAF 225
L+T F H D H++ NM+ LYFFG I E L++ + + +FYL + +
Sbjct: 48 LVTYGFIHADFPHLLFNMVTLYFFGGPI------EVLMERHTGNMLVYPLFYLSALVVSI 101
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVPAFLLGVF 284
L K Q +P+ +LGASGAV+A++ I + P +F IP+PA L VF
Sbjct: 102 LPSYLKNQK----NPNYM-SLGASGAVSAVLFAFILMAPWTGIFFFFIPIPIPAILYAVF 156
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+G + G N++ SAHL GAA +
Sbjct: 157 YVGYSIWMDRRGGDNVNHSAHLAGAAFGVM 186
>gi|350401821|ref|XP_003486271.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Bombus impatiens]
Length = 343
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 24/207 (11%)
Query: 111 RYRWRS----WLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
R WR+ W + E ++ + N VF+ W I P F + + R
Sbjct: 118 RTGWRNTMENWWKNLSEGERIFIPICFLNVLVFLSWHI--PAFRLTMYRYFSCTPTTNRC 175
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
++ FSH + H++ NM LY F LG E L LY+ + S +Y A
Sbjct: 176 WPMLFVTFSHCSLLHLIVNMYVLYGFSKIAVAQLGREQFLALYLISGVVSSFSSYLYKAV 235
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ + R P+LGASGA+ + P A L F+P+ F + +
Sbjct: 236 VGI-------------RDPSLGASGAIMGVFGFVCTQFPNAYLSI-IFLPMFTFTASMAM 281
Query: 286 ---IGKDMLRIIEGNSNISGSAHLGGA 309
+G D L + +AHLGGA
Sbjct: 282 KAIMGLDTLGCLMRWQRFDHAAHLGGA 308
>gi|218512905|ref|ZP_03509745.1| Rhomboid family protein [Rhizobium etli 8C-3]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H H+ NMI L+ FG ++ +G L Y+A + + H L
Sbjct: 74 TYLTYAFVHAGFWHLAGNMIFLWVFGDNVEDAMGHLRFLMFYLA----CAAAGALCHGLL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF----IPVPAFLLG 282
M+S+ P +GASGAV+ ++ + L+P+ ++ F +P+PAF+
Sbjct: 130 GMTSQ-----------APLVGASGAVSGVVAAYVMLHPRVRVWVLVFFRVPLPLPAFVPL 178
Query: 283 VFLIGKDMLRI-IEGNSNISGSAHLGGAAVAAL 314
+ IG+ + I S++S AH+GG L
Sbjct: 179 LLWIGQQFFMLAITPESDVSWGAHVGGIIAGGL 211
>gi|195485572|ref|XP_002091146.1| GE13484 [Drosophila yakuba]
gi|194177247|gb|EDW90858.1| GE13484 [Drosophila yakuba]
Length = 351
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 22/185 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
+++ N F +WR+ P T N + R+ + S FSH HI +NM
Sbjct: 151 ILLCNLVAFAMWRV--PALKGTMMTYFTSN-PAARVVCWPMFLSTFSHYSAMHIFANMYV 207
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
++ F + +LG E L +Y++ + S+ ++Y A + + GM +LG
Sbjct: 208 MHSFANAAVLSLGKEQFLAVYLSAGVFSSLMSVLYKA----GTSQAGM---------SLG 254
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSA 304
ASGA+ ++ P L F+P F G L+G D ++ G +A
Sbjct: 255 ASGAIMTLLAYVCTQYPDTQLSI-LFLPALTFSAGAGIKVLMGIDFAGVVLGWKFFDHAA 313
Query: 305 HLGGA 309
HLGGA
Sbjct: 314 HLGGA 318
>gi|194755283|ref|XP_001959921.1| GF11795 [Drosophila ananassae]
gi|190621219|gb|EDV36743.1| GF11795 [Drosophila ananassae]
Length = 349
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
+++ N F LWR+ P T N + + + S FSH HI +NM L
Sbjct: 149 ILVCNALAFALWRV--PALRNTMMTYFTSNPAAKVVCWPMFLSTFSHYSAMHIFANMYVL 206
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+ F + +LG E L +Y++ + S+ ++Y A + + GM +LGA
Sbjct: 207 HSFANAAVLSLGKEQFLAVYLSAGVFSSLMSVLYKA----GTSQAGM---------SLGA 253
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSAH 305
SGA+ +++ P L F+P F G ++G D + G +AH
Sbjct: 254 SGAIMSVLAYVCAQYPDTQLSI-LFLPALTFSAGAGIKVIMGIDFAGCVMGWKFFDHAAH 312
Query: 306 LGGA 309
LGGA
Sbjct: 313 LGGA 316
>gi|327401074|ref|YP_004341913.1| peptidase S54, rhomboid domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316582|gb|AEA47198.1| Peptidase S54, rhomboid domain protein [Archaeoglobus veneficus
SNP6]
Length = 262
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T F H +H + NMI L FFG + R G LK++ I G++ YL++ A
Sbjct: 114 IVTCIFLHGSFDHYLVNMIVLLFFGSELERRAGGNNYLKIFFLSGIAGNLAYLLF----A 169
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
S+ PALGASGA+ IM + P+ + F F IP+ +
Sbjct: 170 YSTGEL---------YPALGASGAIYGIMGTLAIIAPEIRVLFFFMIPMGIRTALLLFAA 220
Query: 288 KDMLRI-IEGNSNISGSAHLGGAAVAALAWARIR 320
D+ + + ++ +AHL G V ++R
Sbjct: 221 YDLFMLPFSAQTGVAHAAHLAGLLVGLYYGKKLR 254
>gi|407451588|ref|YP_006723312.1| hypothetical protein B739_0812 [Riemerella anatipestifer RA-CH-1]
gi|403312573|gb|AFR35414.1| putative membrane protein [Riemerella anatipestifer RA-CH-1]
Length = 244
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 96/236 (40%), Gaps = 48/236 (20%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 12 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFTHLLFNMI 67
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ---------- 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 68 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQQGVDLASVFR 127
Query: 234 GMWVVDPSR--------------------TPALGASGAVNAIMLLDIFLNPKATLYFDFF 273
G + +PS TP +GASGA+ ++ P A + F
Sbjct: 128 GANLNNPSLNIGAIFGRSDEVAQLQQFLITPMVGASGAIFGVLAAFAVAYPNAGIMI-LF 186
Query: 274 IPVP---AFLLGVFLIGKDMLRIIE-GNSNISGSAHLGGAAVAAL---AWARIRRR 322
IP P L + + G L + N++ AHLGGA V + W+R R R
Sbjct: 187 IPFPIKAKILFPIIIAGSIYLGFTQMAGDNVAHFAHLGGALVGYILIKMWSRNRFR 242
>gi|194883836|ref|XP_001976003.1| GG22614 [Drosophila erecta]
gi|190659190|gb|EDV56403.1| GG22614 [Drosophila erecta]
Length = 351
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 22/185 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
+++ N F +WR+ P T N + R+ + S FSH HI +NM
Sbjct: 151 ILLCNLVAFAMWRV--PALKGTMMTYFTSN-PAARVVCWPMFLSTFSHYSAMHIFANMYV 207
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
++ F + +LG E L +Y++ + S+ ++Y A + + GM +LG
Sbjct: 208 MHSFANAAVLSLGKEQFLAVYLSAGVFSSLMSVLYKA----GTSQAGM---------SLG 254
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV---FLIGKDMLRIIEGNSNISGSA 304
ASGA+ ++ P L F+P F G L+G D ++ G +A
Sbjct: 255 ASGAIMTLLAYVCTQYPDTQLSI-LFLPALTFSAGAGIKVLMGIDFAGVVLGWKFFDHAA 313
Query: 305 HLGGA 309
HLGGA
Sbjct: 314 HLGGA 318
>gi|167763760|ref|ZP_02435887.1| hypothetical protein BACSTE_02140 [Bacteroides stercoris ATCC
43183]
gi|167697876|gb|EDS14455.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 23/214 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L+I N +F+ +A + N + L FL+G + LIT F H H+ NM
Sbjct: 11 LLIINVLMFLGTIVAQSYGIDLNNYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFA 70
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-----YLVYHAFLAMSSKRQGMWVVDP-- 240
++ FG + + GP+ L Y+A IG + Y+ Y L+ + + P
Sbjct: 71 VWMFGRILEQVWGPKRFLFYYLACGIGAGLIQELVQYIHYETVLSAYDSVNTGYSIIPME 130
Query: 241 ---SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+ +GASGAV AI+L L P + F F +P P F+IG ++ + G
Sbjct: 131 EYLNMMTTVGASGAVYAILLGFGMLFPNQPM-FVFPLPFP-IKAKYFVIGYALIELFSGL 188
Query: 298 SNISGS-----AHLGGAA---VAALAWARIRRRG 323
+N G AHLGG + + W R + RG
Sbjct: 189 ANNPGDNVAHFAHLGGMIFGFILIMYW-RKKDRG 221
>gi|284165902|ref|YP_003404181.1| rhomboid family protein [Haloterrigena turkmenica DSM 5511]
gi|284015557|gb|ADB61508.1| Rhomboid family protein [Haloterrigena turkmenica DSM 5511]
Length = 310
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 25/164 (15%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
T TS F+H HIV N I ++FFG + R +G L++ +GA+ G
Sbjct: 133 TWFTSIFAHGGFMHIVFNSIVIFFFGPLVERYVGSRNFAILFLVSGALAG---------- 182
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF------ 279
L + + + P LGASGA AIM + LNP T+Y F IP P +
Sbjct: 183 LGQIAIQYVQGPITPLTPGVLGASGAALAIMGVLTVLNPNLTVYVYFIIPAPIWALTGLT 242
Query: 280 -LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
L VF IG G +I+ AHL G + L + +R
Sbjct: 243 ALASVFFIGTG------GGGDIAHMAHLVGLLI-GLGYGEYVKR 279
>gi|383789325|ref|YP_005473899.1| hypothetical protein [Spirochaeta africana DSM 8902]
gi|383105859|gb|AFG36192.1| putative membrane protein [Spirochaeta africana DSM 8902]
Length = 232
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAM 228
T F H V HI+ NM+ L+ FG + R LG E+L+ G + G ++ +L +
Sbjct: 83 TYMFLHGTVTHILFNMLILFVFGQYLERALGSIEFLVLYLGVGLLAG-----IFSLWLYI 137
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
++ +++ LGASGA+ + + LNP A LY IP+ A +L +
Sbjct: 138 TTGTYMIFL--------LGASGAIYGTVFVFAVLNPHAMLYLMGLIPISARMLVLLYTAL 189
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAAL 314
D+L + G +N + HL G AAL
Sbjct: 190 DLLSHLGGGTNTAHMTHLAGFGFAAL 215
>gi|186680986|ref|YP_001864182.1| rhomboid family protein [Nostoc punctiforme PCC 73102]
gi|186463438|gb|ACC79239.1| Rhomboid family protein [Nostoc punctiforme PCC 73102]
Length = 223
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 35/207 (16%)
Query: 128 YGLIIANTAVFM----LWRIADPKFMANNFTI--SLDNFLSGRLHTLITSAFSHIDVEHI 181
YGLI N VF+ L +F++ + L L+G TL TS F H H+
Sbjct: 18 YGLIGINIVVFLHEVSLSNAQLSQFLSQYAVVPQELTTNLNGEWITLFTSQFLHGGWWHL 77
Query: 182 VSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
+SNM+ L+ FG +I LG +YL +FYL A A+ GM
Sbjct: 78 ISNMLFLWVFGNNIEDRLGHAKYL------------IFYLACGALAALCQWFIGM----N 121
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKAT----LYFDFFIP---VPAF-LLGVFLIGKDMLR 292
S P+LGASGA++ ++ I P A ++ FI +PA ++G+F +
Sbjct: 122 SEIPSLGASGAISGVLGAYIIRFPHAKVMTLVFLGIFITTIRIPALVIIGLFFVQN---- 177
Query: 293 IIEGNSNISGSAHLGGAAVAALAWARI 319
+I G + + +AH+ WA I
Sbjct: 178 VISGLATLQTAAHMTVQTGGVAYWAHI 204
>gi|78356491|ref|YP_387940.1| rhomboid family protein [Desulfovibrio alaskensis G20]
gi|78218896|gb|ABB38245.1| Rhomboid family protein [Desulfovibrio alaskensis G20]
Length = 248
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 44/223 (19%)
Query: 127 VYGLIIANTAVFML---------------WRIADPKFMANNFTISLDNFLSGRLHTLITS 171
V+ +++ N AVFML + + +F + + + + G +T
Sbjct: 17 VWSILLLNIAVFMLQQGMTEQMLVSFLHLYGVVPARFTSPEWAL-FAGYPRGGYIAFLTH 75
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
F H HI++NM L+ F +I +GP + Y+A + +V +++++A
Sbjct: 76 MFIHGGWLHIIANMWTLWIFADNIEDVMGPVRFVLFYLACGLSATVVHILFNA------- 128
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-------TLYFDFFIPVPAFL-LGV 283
S P +GASGA+ +M + L P A L+F F +PA + LG+
Sbjct: 129 --------DSTIPVVGASGAIAGVMGAYLLLYPHAKVFTLIPVLFFPLFFELPAAIYLGI 180
Query: 284 FLI-----GKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ + G + + I+ AHLGG A + RR
Sbjct: 181 WFLTQFFSGVTSIVAPQQGGGIAWWAHLGGFAAGIVLLPYFRR 223
>gi|29348240|ref|NP_811743.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|383121827|ref|ZP_09942531.1| hypothetical protein BSIG_1819 [Bacteroides sp. 1_1_6]
gi|29340143|gb|AAO77937.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251841413|gb|EES69494.1| hypothetical protein BSIG_1819 [Bacteroides sp. 1_1_6]
Length = 224
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------TLITSAFSHIDVE 179
LII N VF +A + I L N+L LH LIT F H
Sbjct: 8 LIIINVLVFF------GTLVAQRYGIDLTNYLG--LHFFLASDFNPAQLITYMFMHGGFS 59
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF--------YLVYHAFLAMSSK 231
HI NM ++ FG + RT GP+ L Y+A IG + Y+V ++ +
Sbjct: 60 HIFFNMFAVFMFGTVLERTWGPKRFLFYYIACGIGAGLIQEGVQYIKYIVDYSHYSQVDI 119
Query: 232 RQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
G+ + + +GASGAV AI+L L P L F F +P P F+IG
Sbjct: 120 GTGIIPMGEFLNMLTTVGASGAVYAILLAFGMLFPNNQL-FIFPLPFPI-KAKFFVIGYA 177
Query: 290 MLRIIEGNSNISGS-----AHLGG 308
++ + G +N G AHLGG
Sbjct: 178 LIELYAGFANNPGDNVAHFAHLGG 201
>gi|348682858|gb|EGZ22674.1| hypothetical protein PHYSODRAFT_492126 [Phytophthora sojae]
Length = 349
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 59 SLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWL 118
++ L + + LL ++ + +R + D + LF+R R F W
Sbjct: 65 TMGLVSGGIIATSLLHKQEESGDFKGLIRNLYGDAEDLFYRGN--GRQFDD------PWF 116
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDNFLSG-RLHTLITSA 172
+ + V +I ANT VF LWR++ +FM +F S D + G R HTL+TSA
Sbjct: 117 ED-NNKKAVASIIAANTLVFGLWRVSFRNARLHQFMWRHFASSYDAVVYGKRFHTLLTSA 175
Query: 173 FSHIDVEHIVSNMIGLYFFG 192
FSHI H NM L+ FG
Sbjct: 176 FSHITFPHFGINMFMLWEFG 195
>gi|294941960|ref|XP_002783326.1| hypothetical protein Pmar_PMAR023448 [Perkinsus marinus ATCC 50983]
gi|239895741|gb|EER15122.1| hypothetical protein Pmar_PMAR023448 [Perkinsus marinus ATCC 50983]
Length = 698
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 29/161 (18%)
Query: 129 GLIIANTAVFMLWRIADPKF-------------MANNFTISLDNFLSGRLHTLITSAFSH 175
G+++ N AV+ WR F + NNFT S ++ GR H I FSH
Sbjct: 101 GMVLLNCAVYGAWRCTALSFRVTPRGGERLRRLLMNNFTCSWEDMAKGRWHQSILYGFSH 160
Query: 176 IDVEHIVSNMIGLYFFGMSI-GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
I H + N LYF G + R + +Y++G G+V ++ + +
Sbjct: 161 ITFPHFIFNTWLLYFIGCPLYDRLRNEKEFGAVYVSGLFAGAVAE-------TLTCRNRA 213
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
TP +GAS V A++ L P Y F IP
Sbjct: 214 --------TPLVGASSGVMALLASLSVLEPNRWWYMLFPIP 246
>gi|374327956|ref|YP_005086156.1| rhomboid family protein [Pyrobaculum sp. 1860]
gi|356643225|gb|AET33904.1| Rhomboid family protein [Pyrobaculum sp. 1860]
Length = 359
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 123 SSEVVYGLIIANTAVFML---WRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
S +V YGLII N VF++ +P + + ++N L+ ++ I S F+H V
Sbjct: 32 SPDVTYGLIIVNVIVFLVTLGMMFENPWAVGVTASEFVENPLNPKV---ILSMFAHAGVL 88
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG---AIGGSVFYLVYHAFLAMSSKRQGMW 236
HI+ NM+ LY +G ++ +G L YMA A+ V + A+ + R +
Sbjct: 89 HILGNMLFLYKYGDNVEAAMGRLRYLVFYMACGYVAVAAQVLFAS-----AVGTPRYML- 142
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI 274
P +GASGA++ ++ I+L P +T Y F I
Sbjct: 143 ------APMMGASGAISGVLGAYIYLWPGSTTYRCFCI 174
>gi|357044108|ref|ZP_09105792.1| hypothetical protein HMPREF9138_02264 [Prevotella histicola F0411]
gi|355367658|gb|EHG15086.1| hypothetical protein HMPREF9138_02264 [Prevotella histicola F0411]
Length = 320
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 32/207 (15%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG--------RLHTLITSAFSHID 177
V L+I N VF+ ++ N I L+N S R+ L+T F H
Sbjct: 7 VTKNLLIINILVFI------ATYVLNGLNIDLNNIFSLHFFLASDFRIWQLVTYMFMHGG 60
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-------LVYHAFLAMSS 230
V HI+ NM L+ FGM + GP+ L YM IG + VY +S
Sbjct: 61 VMHILMNMFMLWMFGMVVENVWGPKKFLFYYMVCGIGAGLCQELAQYGAYVYDGLAQYNS 120
Query: 231 KRQGMWVVDPSRT-----PALGASGAVNAIMLLDIFLNPKATLY---FDFFIPVPAFLLG 282
R +V P T +GASGA+ A++L L P+ ++ I +LG
Sbjct: 121 IRISTDLVVPMETYLNMMTTVGASGAIYAVLLAFGMLFPEERMFIIPIPIPIKAKWIVLG 180
Query: 283 VFLIGKDMLRII-EGNSNISGSAHLGG 308
+G ++ + N ++ AHLGG
Sbjct: 181 S--VGVELFSALGTSNDGVAHLAHLGG 205
>gi|85817538|gb|EAQ38712.1| rhomboid family protein [Dokdonia donghaensis MED134]
Length = 294
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD------PKFMANNFTISLD--NFLSGRLHTLITS 171
+Y ++ + LI+ N V++L+ I + F + D FL + +++T
Sbjct: 9 KYKTANIAIKLIVVNVLVYVLFNIISWLVGLGSGAFSQYFVLPSDVIRFLQ-QPWSVVTY 67
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
AF H H+ NM+ LY F + + L +Y+ GAI G V + + + L +
Sbjct: 68 AFLHSGFGHLFWNMVFLYVFSRFVLNLFSEKKFLAIYLLGAIAGGVLFALLYNVLPV--- 124
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDML 291
+G V+ LGAS AVNAI++ P A + F V + + F++ KD+L
Sbjct: 125 FRGTGVL-------LGASAAVNAIVVFIGTYTPDAEVRI-FTFNVKLWWIAAFIVVKDIL 176
Query: 292 RIIEGNSNISGSAHLGGAA 310
+ GN+ +HLGGAA
Sbjct: 177 LLDAGNAG-GLISHLGGAA 194
>gi|317476443|ref|ZP_07935692.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
gi|316907469|gb|EFV29174.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
Length = 227
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 23/214 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L+I N +F+ +A + N + L FL+G + LIT F H H+ NM
Sbjct: 11 LLIINVLIFLGTVVAQSYGIDLNQYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFA 70
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVYHAFLAMSSKRQGMWVVDPSR 242
++ FG + + GP+ L Y+ IG V Y+ Y L+ + V P +
Sbjct: 71 VWMFGRILEQVWGPKRFLFYYLVCGIGAGLIQELVQYIHYETVLSAYDSVNTGYSVIPMK 130
Query: 243 T-----PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+GASG+V AI+L L P + F F +P P F+IG ++ + G
Sbjct: 131 EYLNMMTTVGASGSVYAILLGFGMLFPNQPM-FIFPLPFPI-KAKYFVIGYALIELYSGF 188
Query: 298 SNISGS-----AHLGGAA---VAALAWARIRRRG 323
+N G AHLGG + + W R + RG
Sbjct: 189 ANNPGDNVAHFAHLGGMIFGFILIMYW-RKKNRG 221
>gi|218297189|ref|ZP_03497851.1| Rhomboid family protein [Thermus aquaticus Y51MC23]
gi|218242466|gb|EED09005.1| Rhomboid family protein [Thermus aquaticus Y51MC23]
Length = 210
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 24/208 (11%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEH 180
+ VV GL++AN F+L P+ + + F G+ + L TS F H H
Sbjct: 14 AWVVKGLVLANALAFLLELAWGPEAVVQAYGFVPALFFQDPLGQGYRLFTSMFLHGGFFH 73
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I+SNM L+ FG ++ +G L Y+ G + ++ QG+
Sbjct: 74 ILSNMWFLWVFGDNVEDRMGHGRFLLFYLLGGVA--------------AALAQGL-FTPA 118
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLY------FDFFIPVPAFLLGVFLIGKDMLRII 294
S P +GASGAV+A++ L P+A + F F+ PA + + +L+ +
Sbjct: 119 STVPMIGASGAVSAVLGAYYVLFPRAYVVSVVLFIFPLFVTFPAGVYLGYWAFLQLLQGL 178
Query: 295 EGNSNISGSAHLGGAAVAALAWARIRRR 322
G ++ AHLGG A R+ RR
Sbjct: 179 LGLPGVAWWAHLGGFLFGVWAGPRLARR 206
>gi|325185827|emb|CCA20333.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 285
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 80/206 (38%), Gaps = 50/206 (24%)
Query: 127 VYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEH 180
+ ++ N VF LWR++ ++M +F S D F+ R HTL+TSAFS + H
Sbjct: 77 IVAILGVNCVVFGLWRVSFYHRGMHRWMWRHFACSYDAVFMGKRFHTLVTSAFSQNTLPH 136
Query: 181 IVSNMIGLYFFGMSI--------------------GRTLGPEYLLKLYMAGAIGGSVFYL 220
+ NM L+ FG I + L L +YM I S +
Sbjct: 137 LAINMFMLWEFGSQIVDARVRVRNALMEAIRKRFRRKKLTENEFLAVYMGATIVSSTTSV 196
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
V + M S LGASG V A+ L + P+ L L
Sbjct: 197 VASRYRGMRS------------VYTLGASGCVMAVFTLYCVMYPEERL----------LL 234
Query: 281 LGVFLIGK-DMLRIIEGNSNISGSAH 305
G+F DMLR+ N+ G A+
Sbjct: 235 YGLFDCSALDMLRLTTAG-NVIGVAY 259
>gi|294084232|ref|YP_003550990.1| rhomboid family protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663805|gb|ADE38906.1| Rhomboid family protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 293
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 28/175 (16%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
P + ++ ++ D L T+ TS F H HI NM+ L+ FG ++ +G
Sbjct: 52 PALVLSDASLPADMVLVPAWMTIFTSMFLHGGWMHIGGNMLYLWIFGDNVEDAMG----- 106
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSK-RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP 264
S+ +++++A +++ QG+ + S P +GASG + I+ I L+P
Sbjct: 107 ----------SLKFILFYALCGVAAAFSQGL-IAPESTIPMIGASGGIAGILGAYIMLHP 155
Query: 265 KATL-------YFDFFIPVPAFL-LGVFLIGK--DMLRIIEGNS-NISGSAHLGG 308
KA++ F FI +PA+L LGV++ G+ + + + GN ++ AH+GG
Sbjct: 156 KASVRTLMVIFVFFRFINLPAWLVLGVWIAGQFVAVPQALSGNEGGVAYMAHIGG 210
>gi|443900175|dbj|GAC77502.1| integral membrane protease of the rhomboid family [Pseudozyma
antarctica T-34]
Length = 444
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
S +VV ++ N AVF+ W +A + +M NF L S R+ TL+TS FSH +
Sbjct: 213 SKQVVLPIVALNAAVFVAWTVAARRGGGWMMRNF---LHRPSSNRMRTLLTSVFSHQTLI 269
Query: 180 HIVSNMIGLYFFGMSI------------GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
H N + L+ FG + + P +L AG +V ++V
Sbjct: 270 HFGLNNMALWSFGGAALYAASQQHKRVPEASPTPHFLAFFATAGVFAATVSHIVTAIRFR 329
Query: 228 MSSKRQGMWVVDPS--RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV-- 283
+ +G+ V + R +LG+SGAV A +++ P A L +P F +GV
Sbjct: 330 RVAALRGLDVAKSTVGRQASLGSSGAVYAALVMSACAFPDAKLGI-ILLPFVTFPIGVGV 388
Query: 284 -FLIGKDMLRIIEGNSNISGSAHLGGAA-------VAALAWARIR 320
L+ D+ I+ AHL GAA V A AW ++
Sbjct: 389 AGLVALDVAGIVLRWRLFDHWAHLAGAAFGYAYFHVGAKAWEDLK 433
>gi|383764016|ref|YP_005442998.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381384284|dbj|BAM01101.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 228
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 34/173 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL TS F H + H++SNM LY FG ++ +G L Y+ + ++ ++
Sbjct: 60 TLFTSMFLHGGLFHLLSNMWALYIFGDNVEDRMGSGRFLIFYLLCGVAAAIVHV------ 113
Query: 227 AMSSKRQGMWVVDPSRT-PALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPA 278
+++PS T P +GASGA++ +M + L P A TL FFIP +PA
Sbjct: 114 ----------LMNPSSTIPTVGASGAISGVMGAYLVLFPFARVITLVPFFFIPYFFEIPA 163
Query: 279 -FLLGVFLIGKDMLRIIE---GNSNISGS---AHLGGAAVAALAWAR--IRRR 322
F +GV+ G+ + +I +I G AH+GG VA + AR I RR
Sbjct: 164 LFFIGVWFAGQLVNALITSALATPDIGGVAWWAHVGG-FVAGMVLARLFIVRR 215
>gi|326925578|ref|XP_003208989.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like, partial [Meleagris gallopavo]
Length = 266
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 24/234 (10%)
Query: 82 LSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFML 140
L S+++ F + + + P++ SFR + SW + V G+I AN +F L
Sbjct: 10 LKSRVQSYFEEARADWLDKIRPQKR-GSFRKQVNSWWNNLTEGQRTVTGIIAANVFIFCL 68
Query: 141 WRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
WR+ P FT + S L + ++ S FSH + H+ +NM L+ F S+ L
Sbjct: 69 WRL--PGMRRIMFTYFTSDPSSKALCSPMLLSTFSHFSLFHMAANMYVLWSFSSSVVSLL 126
Query: 200 GPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
G E + +Y+ AG I V Y+ A + K + P+LGASGA+ ++
Sbjct: 127 GCEQFIAVYLSAGVISTFVSYVAKMA----TGKFE----------PSLGASGAIMTVLAA 172
Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L I D + G +AHLGGA
Sbjct: 173 VCTKMPEAKLAI-IFLPMFTFTAGNALKAIIAFDTAGLALGWRFFDHAAHLGGA 225
>gi|428171029|gb|EKX39949.1| hypothetical protein GUITHDRAFT_75947, partial [Guillardia theta
CCMP2712]
Length = 164
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+ S FSHI + H NM L+ FG + LGPE L Y++ +
Sbjct: 1 LLGSTFSHITLPHFAFNMFALFSFGQPLVDVLGPENFLACYLSAGV-------------- 46
Query: 228 MSSKRQGMWV--VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGV 283
S GM + + TP+LGASGAV + L L P A F FI +PA + +
Sbjct: 47 -LSSLGGMMIKLMTTCTTPSLGASGAVLFMASLTALLWPSAQFGIIFLPFISLPAQTMLL 105
Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
++ D+ ++ G AHL A L
Sbjct: 106 GIVALDISGLVLGWRMFDHGAHLAAVATGFL 136
>gi|340620371|ref|YP_004738824.1| serine endopeptidase [Zobellia galactanivorans]
gi|339735168|emb|CAZ98545.1| Serine endopeptidase, family S54 [Zobellia galactanivorans]
Length = 216
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ ++TS F H+DV H+ NM LYFF + L +Y + GS+ +
Sbjct: 41 AGQKERMLTSGFLHVDVAHLFFNMFTLYFFAPVVVNWFSSGKFLAIYFLSLLAGSLLAVY 100
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFL 280
+H K++ + A+GASGAV ++ I L P L F +PVPA++
Sbjct: 101 FH-------KKEPYY-------SAVGASGAVTGVLYAAILLQPNMQLGIMFIPLPVPAYV 146
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G+ + + + NI +AH GGA
Sbjct: 147 FGIGYLLYSIYGMKSRMGNIGHTAHFGGA 175
>gi|291515609|emb|CBK64819.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Alistipes shahii WAL 8301]
Length = 200
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 25/212 (11%)
Query: 119 RQYGSSEVVYGLIIANTAVFM---LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH 175
R + + VV LII N V+M L + D ++ F + IT F H
Sbjct: 3 RYFQTPPVVKNLIIINVLVYMATALLPVGDTIMQYCALSLGTPYF---HTYQFITYMFLH 59
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAFLAMSSKRQG 234
+ EHI NM L+ FG ++ LG + L YM +G ++ YL AF
Sbjct: 60 ANFEHIFFNMFALWMFGRTLEYELGSQRFLTFYMVCGVGAALIQYLTALAF--------- 110
Query: 235 MWVVDPSRTPAL--GASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDML 291
P L GASGAV ++L ++P A + IP+ A + ++
Sbjct: 111 ------GELPLLLVGASGAVMGLLLAFGVMHPNAVIMLLIPPIPMKAKWFVIIYAVIELF 164
Query: 292 RIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
+G N++ AH+GG L +RRG
Sbjct: 165 LGWKGVGNVAHFAHVGGMLWGFLLLHWWKRRG 196
>gi|372271933|ref|ZP_09507981.1| rhomboid family protein [Marinobacterium stanieri S30]
Length = 481
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 52/233 (22%)
Query: 116 SWLRQYGSSEVVYGLIIA-------------------NTAVFMLWRIADPKFMANNFTIS 156
W RQ SE VY L A + ++ WR P A ++S
Sbjct: 76 DWARQAYDSEQVYWLAQAMLMDRTYYDQLQGEARQVFDEQLYARWRNERPDIQATFESVS 135
Query: 157 LDNFLSG------RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+F G TLIT F H D+ H++ NMI L G ++ +G L Y+
Sbjct: 136 --SFAYGLKATDVSFTTLITHQFLHGDLGHLLGNMIFLLICGFAVEAAIGHLRFLAFYLL 193
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAI--MLLDIFLNPKATL 268
G I V +V + S P +GASGA++ + M L +F +
Sbjct: 194 GGILAGVTQVVTNL---------------GSDVPLVGASGAISGVMAMYLAVFRLKRIEF 238
Query: 269 YFDFFI-----PVPAFLLGVFLIGKDMLR--IIEGNSNISGSAHLGGAAVAAL 314
++ F PA ++ IGK++ + +EG SN++ AH GG A+
Sbjct: 239 FYWIFCFAGYFRAPALMILPLYIGKEVYQYLFMEG-SNVAYMAHAGGFVAGAI 290
>gi|372210242|ref|ZP_09498044.1| hypothetical protein FbacS_08990 [Flavobacteriaceae bacterium S85]
Length = 205
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
+F N + S+ + G + L +S F H+D H+ NM LY F ++ + L
Sbjct: 16 QFFFNKYKFSVLSIQKGEQYRLFSSGFLHVDYFHLGFNMYALYLFSGTVLYSFSSVQFLL 75
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
+Y + G+ +L++ + DP + A+GASGAV I+ I L P
Sbjct: 76 VYGVSLLAGN--------YLSLFVHKN-----DPYYS-AVGASGAVTGIVYSSIVLFPDM 121
Query: 267 TLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
LY IP+ + G+ + + + N+ +AH+GGA L
Sbjct: 122 KLYLLLIPIPIKGYFFGIAYLLYSIYGMRNQVGNVGHTAHIGGAVAGYL 170
>gi|422323890|ref|ZP_16404927.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
gi|353344683|gb|EHB88984.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
Length = 270
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 55/226 (24%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
A P RSF + R W + Y LI+ N V+ L +I +++ N +S +
Sbjct: 61 ASSPTRSFIA-----RHW-------HITYTLILINVVVYGLQQIIPFRWVYNLGAMSGPS 108
Query: 160 FLSGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG-- 215
G + LIT F H D H+V NMI L+ FG+S+ R +G L +YMA +G
Sbjct: 109 VHRGEYYRLITHGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLFVYMAATLGAGF 168
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIP 275
SV+ Y+ SRT +GASG V LY FF+
Sbjct: 169 SVYIFDYY-----------------SRT--VGASGGVYG-------------LYGAFFVI 196
Query: 276 V------PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ L + LIG D+++ + + +IS + H GG ALA
Sbjct: 197 LLLRRQKDTARLFMLLIGIDVVQSLF-HPHISLAGHFGGLVSGALA 241
>gi|319954282|ref|YP_004165549.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422942|gb|ADV50051.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
+++T AF H D HI NM+ LYF G G + +Y GAI GG +F L Y+ F
Sbjct: 62 SIVTYAFFHGDFGHIFWNMVMLYFTGRIFMNLFGERKFVNVYFLGAIFGGLLFILSYNIF 121
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A+ + +GAS AV A+++ P + F V + +GV
Sbjct: 122 PALIGLNNSL----------IGASAAVMAVLIFVCTYTPNQEVRVILF-NVKLWHVGVVF 170
Query: 286 IGKDMLRIIEGNSNISGS-AHLGGAAVA 312
+ D+ I G NI G +HLGGA +
Sbjct: 171 VLIDLF-FIGGGVNIGGRLSHLGGAFIG 197
>gi|399992372|ref|YP_006572612.1| rhomboid protein-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656927|gb|AFO90893.1| rhomboid protein-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 258
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 35/205 (17%)
Query: 126 VVYGLIIANTAVFML--WRIADPKFMA---NNFTISLDNFLSG-RLHTLITSAFSHIDVE 179
V Y LI AN A+F L + P+ + N + + SG L TL+TS F H
Sbjct: 16 VTYALICANVAIFALTYFGYDSPRRLTALYNAYALLPAEVTSGYDLKTLLTSTFLHGSWM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G + Y+ IG + ++ +
Sbjct: 76 HLGGNMLFLWIFGDNMEDEMGHVPFIAFYLVSGIGAGLIHVASAPY-------------- 121
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAF-LLGVFLIGKDM 290
S P +GASGA+ +M + L P+A +YF F +PAF +LGV+L G
Sbjct: 122 -SLVPLVGASGAIAGVMGGYLLLFPRARVDILLILIIYFRVF-SIPAFVMLGVWL-GMQF 178
Query: 291 LRIIEGNSNISGS---AHLGGAAVA 312
L I + G AH GG V
Sbjct: 179 LGGIGSDPQAGGVAYWAHAGGFGVG 203
>gi|374815406|ref|ZP_09719143.1| rhomboid family protein [Treponema primitia ZAS-1]
Length = 207
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 24/207 (11%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRLHTLITSAFSHID 177
Y VV +I N V+++ RI +P+F + ++L+ L G +T F+H
Sbjct: 9 HYRYDNVVLYIIGINVLVYIMQRI-NPRFTS---YLALNPILIQRGFYWQFVTYMFAHGG 64
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-GAIGGSVFYLVYHAFLAMSSKRQGMW 236
+ HI+ NM+ L+ FG + R +G + L Y++ G + G + +++Y W
Sbjct: 65 ISHILFNMLALFIFGAQVERRMGSKEFLVYYLSTGILAGFLSFVIY-------------W 111
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG 296
LGASGA+ A+ L P + +Y +P+ A + ++G L +
Sbjct: 112 FTGSYGVFLLGASGALFAVQLAYATFFPDSVIYLWGILPLKA---PIMVLGFTALELFSS 168
Query: 297 NSNI-SGSAHLGGAAVAALAWARIRRR 322
+ SG AHL A A W R
Sbjct: 169 VTGFRSGVAHLTHLAGFAFGWIYFLVR 195
>gi|336246507|gb|AEI27594.1| rhomboid-7-like protein, partial [Trichoplusia ni]
Length = 284
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITS 171
+W + LR S +V Y ++ AN VF WR+ + FM F + S R ++ S
Sbjct: 133 KWWNSLRD--SEKVFYPILAANVLVFGCWRVRSLQPFMVKYFCSNPSG--SSRCLPMLLS 188
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
FSH H+ +NM LY F + +LG E + +Y++ + S +Y L
Sbjct: 189 TFSHYSALHLAANMYVLYSFMPAAVASLGKEQFVAMYLSAGVVSSFASFLYKVLL----N 244
Query: 232 RQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
+ G+ +LGASGA+ +++ P L F+P+ F
Sbjct: 245 QPGL---------SLGASGAIMSVLSYVCVQYPDTRLSI-IFLPMYTF 282
>gi|402304909|ref|ZP_10823972.1| peptidase, S54 family [Prevotella sp. MSX73]
gi|400380695|gb|EJP33508.1| peptidase, S54 family [Prevotella sp. MSX73]
Length = 339
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 126 VVYGLIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVE 179
+ L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H E
Sbjct: 32 ITKNLLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFE 90
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----YLVYHAFLAMSS----K 231
HI+ NM L+ FG + GP+ L Y++ +G +F V +A SS
Sbjct: 91 HILFNMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLFQELAQFVQFYVVAGSSIPGFS 150
Query: 232 RQGMWVVDPSRTPAL------GASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLL 281
+W V + +L GASGA+ AI+L + P+ + F F +P+P F++
Sbjct: 151 LSDIWAVAAANGASLNSWTTVGASGAIYAILLAFGMIFPEERI-FIFPLPIPIKAKWFVM 209
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGG 308
G I + I ++ AHLGG
Sbjct: 210 GYAAI-ELFSAIATTGDGVAHIAHLGG 235
>gi|294055651|ref|YP_003549309.1| rhomboid family protein [Coraliomargarita akajimensis DSM 45221]
gi|293614984|gb|ADE55139.1| Rhomboid family protein [Coraliomargarita akajimensis DSM 45221]
Length = 312
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLL 205
F+ F +S F +L T+ T F H HI+ NM+GL+F G I LG +
Sbjct: 56 FLTQWFALSGYGFQQFKLWTIWTYGFLHSTQGFFHILGNMLGLFFIGRMIEPVLGKAKFV 115
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
LY +GA+ G + YL +H G P +GAS AV A++ L P+
Sbjct: 116 GLYFSGALLGGLAYLFFHF-------NDGF--------PVVGASAAVLALLSFFCLLQPE 160
Query: 266 --ATLYFDFFIPV---PAFLLGVFL-------IGKDMLRIIEG---NSNISGSAHLGGAA 310
TL F +PV P +L L I ++ ++E S ++ SAHLGG
Sbjct: 161 RPITLLLFFVLPVTIKPKWLFWAVLVISALGAIAYELPSMLESGHMTSPVAHSAHLGGMI 220
Query: 311 VAAL 314
L
Sbjct: 221 AGIL 224
>gi|448377469|ref|ZP_21560165.1| rhomboid family protein [Halovivax asiaticus JCM 14624]
gi|445655413|gb|ELZ08258.1| rhomboid family protein [Halovivax asiaticus JCM 14624]
Length = 244
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 137 VFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMS 194
V ++ R DP+ F ++ + + T +TS F+H I + HI N I ++FFG
Sbjct: 35 VQLIVRSIDPQLHQTLFVLTPQH--PEYVWTWVTSIFAHSPIKITHIAFNSIAIFFFGPL 92
Query: 195 IGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGASG 250
+ R L L++ AGA+ G + + AF S PA LGASG
Sbjct: 93 LSRYLSDRQYWGLFLGAGALAG-LSQIAVQAF---------------SPGPAAGVLGASG 136
Query: 251 AVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
A AI+ + L+P +YF FFIP+P ++L + +L + S++ G AH
Sbjct: 137 AALAILGVITILHPNLKVYFMFFIPMPLWILTLGFAVLSLLMVGFSLSSLGGIAH 191
>gi|386347650|ref|YP_006045899.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412617|gb|AEJ62182.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 231
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 37/226 (16%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIA---DPKFMANNFTISLDNFLS----GRLHTLIT 170
+R + V +GLI+ N VF LW + + + + F ++ + G +T
Sbjct: 8 VRSWSFPWVNWGLIVTNVLVF-LWMVGLGPEAELVVRRFGLTPAYVVGSGDPGVFVQFLT 66
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
+ F H H+ SNM+ LY FG ++ LG L Y+ I SV ++
Sbjct: 67 AMFLHGGWAHLFSNMLALYIFGDNVEDRLGSGRYLIFYLLSGIAASVVHIA--------- 117
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIPVPAFLLGVFLIG 287
+ S P +GASGA++ ++ + + P A TL FF+P+ + +F IG
Sbjct: 118 ------LFPHSTVPMVGASGAISGVLAAYVLMFPTARVITLIPVFFLPLFVEIPALFYIG 171
Query: 288 --------KDMLRIIEGNSNISGS---AHLGGAAVAALAWARIRRR 322
I+ G G AH+GG AL R R
Sbjct: 172 GWFVSQLLNGFATIVTGVGAFGGVAWWAHVGGFVAGALMLPAFRAR 217
>gi|317504626|ref|ZP_07962593.1| rhomboid family protein [Prevotella salivae DSM 15606]
gi|315664247|gb|EFV03947.1| rhomboid family protein [Prevotella salivae DSM 15606]
Length = 319
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 40/219 (18%)
Query: 126 VVYGLIIANTAVFML-WRIADPKFMANNFTISLDN------FLSG--RLHTLITSAFSHI 176
V L++ N F+L W + FM I L+N FL+ + + L T F H
Sbjct: 7 VTKNLLLINVIAFILMWLLQRVSFMGGT-PIDLNNIFGLHFFLATDFQFYQLFTYMFMHA 65
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV---------FYLVYHAFL- 226
++EHI NM L+ FGM + GP L Y+ IG + FYL + +
Sbjct: 66 NLEHIFFNMFALWMFGMVVEHVWGPRRFLFYYIICGIGAGIFQEAAQFCSFYLTVSSHIP 125
Query: 227 --AMSSKRQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYF---------DFF 273
+ Q + + P + +GASGA+ AI+L L P L+ FF
Sbjct: 126 SFTIGQLPQIAYQLSPMLNNWTTVGASGAIYAILLAFGMLFPNERLFIIPIPIPIKAKFF 185
Query: 274 IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
+ + A G+ L+ + + + N++ AHLGG V
Sbjct: 186 VMIYA---GIQLV----MALSTTSDNVAHLAHLGGMIVG 217
>gi|315607054|ref|ZP_07882058.1| rhomboid family protein [Prevotella buccae ATCC 33574]
gi|315251108|gb|EFU31093.1| rhomboid family protein [Prevotella buccae ATCC 33574]
Length = 339
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 126 VVYGLIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVE 179
+ L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H E
Sbjct: 32 ITKNLLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFE 90
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----YLVYHAFLAMSS----K 231
HI+ NM L+ FG + GP+ L Y++ +G +F V +A SS
Sbjct: 91 HILFNMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLFQELAQFVQFYVVAGSSIPGFS 150
Query: 232 RQGMWVVDPSRTPAL------GASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLL 281
+W V + +L GASGA+ AI+L + P+ + F F +P+P F++
Sbjct: 151 LSDIWAVAAANGASLNSWTTVGASGAIYAILLAFGMIFPEERI-FIFPLPIPIKAKWFVM 209
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGG 308
G I + I ++ AHLGG
Sbjct: 210 GYAAI-ELFSAIATTGDGVAHIAHLGG 235
>gi|300693980|ref|YP_003749953.1| peptidase s54, rhomboid family [Ralstonia solanacearum PSI07]
gi|299076017|emb|CBJ35328.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
PSI07]
gi|344169739|emb|CCA82101.1| putative peptidase S54, rhomboid family [blood disease bacterium
R229]
Length = 197
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + R LG LY+A + + + F
Sbjct: 48 LVTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAAFTQIAVVGFFT 107
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVPAFLLG-VFL 285
+ P +GASG V ++L L P + L IP+PA+L V+
Sbjct: 108 FPAG------------PIVGASGGVFGLLLAYAVLFPRRMILLLIPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +S ++ AHLGG A L W R R
Sbjct: 156 LVELTLGVSGSHSGVAHFAHLGGMAGSGVLLWRWFRGR 193
>gi|371777326|ref|ZP_09483648.1| rhomboid family protein [Anaerophaga sp. HS1]
Length = 296
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL+T F H D H++ N++ LY+FG + LL +Y+ G IGG++ +L+ FL
Sbjct: 70 TLLTYMFLHYDFFHLLFNVLYLYWFGRLFVDLIDGGKLLTIYILGGIGGALVFLLAFNFL 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
G ++ LGAS +V AI+ +NP +Y PV L +
Sbjct: 130 PAFYPGGGGSIL-------LGASASVMAILFAVARVNPNFVVYVFLIGPVKLKYLALVAF 182
Query: 287 GKDMLRIIEGNSNISGS-AHLGGAAVA 312
D++ I G +N G AH+GGA V
Sbjct: 183 LIDLVS-IPGMANAGGHLAHIGGALVG 208
>gi|410684900|ref|YP_006060907.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CMR15]
gi|299069389|emb|CBJ40655.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CMR15]
Length = 197
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + R LG LY+A + + A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERALGGARTGVLYLASVLSAA---FTQMAVMG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVPAFLLG-VFL 285
+++ G P +GASG V ++L L P + L IP+PA+L V+
Sbjct: 105 LTTLPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLIPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L I + I+ AHLGG A L W +R R
Sbjct: 156 LVELTLGISGSHRGIAHFAHLGGMAGSGVLLWRWLRGR 193
>gi|448317483|ref|ZP_21507036.1| rhomboid family protein [Natronococcus jeotgali DSM 18795]
gi|445603384|gb|ELY57347.1| rhomboid family protein [Natronococcus jeotgali DSM 18795]
Length = 293
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 24/162 (14%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYH 223
T +TS F+H + H+V N I ++FFG + R +G + L++ +GA+ G
Sbjct: 120 TWVTSVFAHDPGGITHLVFNSIVVFFFGPLVERYVGSKNFAILFVVSGALAGL------- 172
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+A+S+ QG+ T LGASGA AIM + LNP +Y F +PVP ++L
Sbjct: 173 GQVAISAA-QGV------PTSVLGASGAALAIMGVLTVLNPNLKVYLYFILPVPIWVL-- 223
Query: 284 FLIGKDMLRII----EGNSNISGSAHLGGAAVAALAWARIRR 321
IG ++ ++ G I+ AHL G + IRR
Sbjct: 224 -TIGTALISVVYIGTGGGGPIAHGAHLVGLLIGLGYGEYIRR 264
>gi|333377215|ref|ZP_08468951.1| hypothetical protein HMPREF9456_00546 [Dysgonomonas mossii DSM
22836]
gi|332886428|gb|EGK06672.1| hypothetical protein HMPREF9456_00546 [Dysgonomonas mossii DSM
22836]
Length = 253
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 39/229 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL--HTLITSAFSHIDVEHIVSNMIG 187
LII N V++ + + +N+ ++L F S H +IT F H + HI NM
Sbjct: 19 LIIINFLVWIADELLGSRLNMSNY-LALHYFYSEHFMPHQIITYMFMHGSLGHIFFNMFA 77
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVYHAFLA-MSSK------RQGM 235
+Y FG ++ GP+ L YM IG + + Y+ H+ A MS++ +GM
Sbjct: 78 VYMFGRTLEMVWGPKRYLVYYMLTGIGAAALQMLITYIRVHSIEANMSAEAISTVYNEGM 137
Query: 236 WVV-------DPS--------RTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAF 279
++ DP T +GASGAV +++ L P L FF +P+ A
Sbjct: 138 GILMSNRNYTDPDMGALNLLVNTSMVGASGAVFGVLVAFGMLFPNVELMMLFFPVPIKA- 196
Query: 280 LLGVFLIGKDMLRIIEG-----NSNISGSAHLGGAAVAALAWARIRRRG 323
F+IG ++ + G N++ AHLGG R++G
Sbjct: 197 --KWFVIGYGVMELFLGIVDNAGDNVAHFAHLGGLITGFFIILYWRKKG 243
>gi|329964254|ref|ZP_08301355.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
gi|328525559|gb|EGF52602.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
Length = 227
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS- 216
DNF + +L IT F H HI NM ++ FG + + GP+ L Y+A IG
Sbjct: 44 DNFNAAQL---ITYMFMHGSFTHIFFNMFAVWMFGRILEQVWGPKRFLFYYLACGIGAGL 100
Query: 217 ----VFYLVYHAFLAMSSKRQGMWVVDPSRT-----PALGASGAVNAIMLLDIFLNPKAT 267
V Y+ Y L+ + V P + +GASGAV AI+L L P
Sbjct: 101 IQEIVQYVHYETVLSAYDSVNTGYSVIPMKEYLNMMTTVGASGAVYAILLAFGMLFPNQP 160
Query: 268 LYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-----AHLGGAA---VAALAWARI 319
+ F F +P P F+IG ++ + G +N G AHLGG + + W R
Sbjct: 161 M-FIFPLPFP-IKAKYFVIGYALIELYSGFANNPGDNVAHFAHLGGMIFGFILIMYW-RK 217
Query: 320 RRRG 323
+ RG
Sbjct: 218 KNRG 221
>gi|327350805|gb|EGE79662.1| rhomboid family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 583
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ + +++ S FSH H+
Sbjct: 363 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVPLYPYS--ISIVGSIFSHQQFRHL 420
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G + LG L LY + + S+ L H Q V
Sbjct: 421 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL-------QNKLTVT-- 471
Query: 242 RTPALGASGAVNAIM 256
+LGASGA+ ++
Sbjct: 472 ---SLGASGAIAGLV 483
>gi|392969396|ref|ZP_10334811.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
gi|387841590|emb|CCH56869.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
Length = 307
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 130 LIIANTAVFMLWRIADPKF-MANN--------FTISLDNFLSGRLH---TLITSAFSHID 177
LI+ NT VF+ +A MAN +++ LS LH TL T F+H D
Sbjct: 22 LILVNTVVFLTLLLARVGLTMANQPGTYDFILAQLTIPATLSAFLHKPWTLFTYFFTHQD 81
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAFLAMSSKRQGMW 236
+ HI+ NM+ LY+FG I LG L+ LY G + GG+++ L+Y+ ++ +
Sbjct: 82 IFHILYNMLFLYWFGRLIDEYLGNRRLVGLYFLGGLAGGALYLLMYNLVPYFQNQAESAQ 141
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIE- 295
++ S A GA + P T + FF PV + F I +L I +
Sbjct: 142 MLGASAAAFSVAVGAATLL--------PNYTFHLLFFGPVRIKYIVFFFI---VLSIAQS 190
Query: 296 GNSNISGS-AHLGGA 309
N G+ AHLGG
Sbjct: 191 AGPNAGGNLAHLGGT 205
>gi|167038270|ref|YP_001665848.1| rhomboid family protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116677|ref|YP_004186836.1| Rhomboid family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166857104|gb|ABY95512.1| Rhomboid family protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929768|gb|ADV80453.1| Rhomboid family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 227
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
IS F S L+ ITS F H + H++SNM L+ FG ++ +G L Y+
Sbjct: 54 TKLVISGVPFSSSDLYPFITSMFLHGNTLHLISNMWILWLFGDNVEDRMGHIRFLIFYLL 113
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---T 267
+ VF+LV++ S+ P +GASGA+ IM L P A T
Sbjct: 114 SGVIAGVFHLVFNPL---------------SQVPVVGASGAIAGIMGAYFVLFPSARIIT 158
Query: 268 LYFDF-----FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
L F F+P+PA V+L + ++ G + +GG V +AW
Sbjct: 159 LVPSFFLVPVFLPIPAV---VYLFLWFLTQLYSGTVY----SVIGGTTVGGIAW 205
>gi|228472182|ref|ZP_04056948.1| rhomboid family protein [Capnocytophaga gingivalis ATCC 33624]
gi|228276385|gb|EEK15109.1| rhomboid family protein [Capnocytophaga gingivalis ATCC 33624]
Length = 245
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 124 SEVVYGLIIANTAVFMLWR-IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++ V LIIAN F+L I + A + I NF + + + F H V HI
Sbjct: 4 TKAVAHLIIANVLFFLLAHFIPMLQDKAALYYIENPNF---QWWQVFSHLFMHASVAHIF 60
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG-----SVFYLVYHAFL----------- 226
NM LY FGM + G + Y A +G +V Y +H+ L
Sbjct: 61 FNMFALYSFGMPLESYFGSNRFIVFYFACGLGAAFLHTAVNYYEFHSALDILQSKGFSIS 120
Query: 227 -AMSSKRQGMW---------------VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYF 270
A ++GM+ ++ PA+GASGA+ I++ L P A L
Sbjct: 121 QAQELLQKGMYNTGWEEALSESDFKDMMSAYMIPAVGASGAIYGILVAFGVLFPNAELML 180
Query: 271 DFF-IPVPAFLLGVFLIGKDMLRIIEG----NSNISGSAHLGGAAVA 312
F IP+ A LI D+ + G SNI+ AH+GGA +
Sbjct: 181 MFLPIPIKAKYFIPILIALDLFSGVTGYSIFGSNIAHFAHVGGALIG 227
>gi|295133316|ref|YP_003583992.1| transmembrane rhomboid family protein [Zunongwangia profunda
SM-A87]
gi|294981331|gb|ADF51796.1| transmembrane rhomboid family protein [Zunongwangia profunda
SM-A87]
Length = 304
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA-IGGSVFYLVYHAF 225
T+I+ +F H + H+ SNM+ LYF G+ P+ LL Y G IGG VF L Y+ F
Sbjct: 68 TIISYSFLHGGIWHLASNMLILYFSGIYFLNFFSPKRLLNYYFLGVIIGGLVFMLSYNLF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A S ++ +GAS V A+++ P + V + + L
Sbjct: 128 PAFSG----------GKSYLVGASAGVMAVLIGVATQAPNMYVRLLIIGNVKFWWIAATL 177
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ D+++I GN+ AHLGGA + L ++ +
Sbjct: 178 VAIDIIQIPMGNAG-GHLAHLGGAGLGYLYTTQLHK 212
>gi|261198913|ref|XP_002625858.1| rhomboid family protein [Ajellomyces dermatitidis SLH14081]
gi|239595010|gb|EEQ77591.1| rhomboid family protein [Ajellomyces dermatitidis SLH14081]
Length = 570
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ + +++ S FSH H+
Sbjct: 350 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVPLYPYS--ISIVGSIFSHQQFRHL 407
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G + LG L LY + + S+ L H Q V
Sbjct: 408 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL-------QNKLTVT-- 458
Query: 242 RTPALGASGAVNAIM 256
+LGASGA+ ++
Sbjct: 459 ---SLGASGAIAGLV 470
>gi|95929749|ref|ZP_01312490.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
gi|95134045|gb|EAT15703.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
Length = 397
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 26/156 (16%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RL L S F H + H+ NM+ L+ FG ++ LGP L LY+ + +VF+
Sbjct: 88 RLDDLFFSLFLHAGLLHLAGNMLFLWIFGDNVEYRLGPWLYLVLYLFTGVMATVFF---- 143
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-YFDFFIP------- 275
++ +D S TP +GASGA++ I+ P+ + F F P
Sbjct: 144 ----------ALFTLD-SYTPLIGASGAISGILGCYFIWFPRNKVKTFIFLFPFIMTTIL 192
Query: 276 VPA-FLLGVFLIGKDMLR--IIEGNSNISGSAHLGG 308
+PA +LGVFL+ ++L + S ++ AH+GG
Sbjct: 193 LPARLVLGVFLVIDNVLPFLFVHSGSGVAHGAHIGG 228
>gi|78188027|ref|YP_378365.1| hypothetical protein Cag_0043 [Chlorobium chlorochromatii CaD3]
gi|78170226|gb|ABB27322.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 264
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+I+AN AVFML R+ + + F I NF + ++ F H + H+ NM
Sbjct: 8 IILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFY---IWQPVSYMFMHGGLTHLFFNM 64
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
L+ FG I G Y IG ++ L+ S P
Sbjct: 65 FALWMFGAEIENYWGTRQFTIYYFICGIGAALINLI---------------ATMHSPYPT 109
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG--------N 297
+GASGAV ++L + P ++ FF P+ A F+ G +L + G
Sbjct: 110 IGASGAVYGVLLAFGMMFPNRYIFLYFFFPIKA---KYFIAGYALLEFVSGLGSREMGSG 166
Query: 298 SNISGSAHLGGAAVA 312
SNI+ AHLGG +
Sbjct: 167 SNIAHFAHLGGMLIG 181
>gi|298207996|ref|YP_003716175.1| transmembrane rhomboid family protein [Croceibacter atlanticus
HTCC2559]
gi|83850637|gb|EAP88505.1| putative transmembrane rhomboid family protein [Croceibacter
atlanticus HTCC2559]
Length = 299
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS-VFYLVYHAF 225
TLIT AF H + HI+ NM+ L++ P+ LL Y GAI G+ VF L Y+ F
Sbjct: 67 TLITYAFFHSGLWHILGNMLILFYASQYFLNYFSPKRLLNYYFLGAICGALVFMLSYNVF 126
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A + R+ +GAS AV A+++ P + F + + + FL
Sbjct: 127 PAFQGQ---------GRSTLIGASAAVMAVLVGIATHIPHMRIRLMFLGSIKFWWIAAFL 177
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ D+++I N AHLGGA
Sbjct: 178 VVIDVIQIPLNNPG-GHLAHLGGA 200
>gi|73540854|ref|YP_295374.1| rhomboid-like protein [Ralstonia eutropha JMP134]
gi|72118267|gb|AAZ60530.1| Rhomboid-like protein [Ralstonia eutropha JMP134]
Length = 155
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H ++ H+ NM+GL+ FG S+ +LGP +L +Y+A + + L ++A
Sbjct: 61 LLTYGFLHANLAHLAFNMLGLWMFGRSVEASLGPGRMLAVYLASLVSAGLIQLAVLGYIA 120
Query: 228 MSSKRQGMWVVDPSRTPALGASGAV 252
P+ P +GASGAV
Sbjct: 121 ------------PAHMPTIGASGAV 133
>gi|45658768|ref|YP_002854.1| hypothetical protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45602012|gb|AAS71491.1| cytoplasmic membrane protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 198
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 42 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFILFYLGTILITSVI------- 94
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + +P + LGASG V ++ I P +LY F IP+P + V
Sbjct: 95 ----SWRKNL--GNPHYS-TLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 147
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 148 YLIYTYFSSKSGAADGINHDAHLWGA 173
>gi|288926929|ref|ZP_06420827.1| rhomboid family protein [Prevotella buccae D17]
gi|288336288|gb|EFC74671.1| rhomboid family protein [Prevotella buccae D17]
Length = 314
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 126 VVYGLIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVE 179
+ L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H E
Sbjct: 7 ITKNLLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFE 65
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----YLVYHAFLAMSS----K 231
HI+ NM L+ FG + GP+ L Y++ +G +F V +A SS
Sbjct: 66 HILFNMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLFQELAQFVQFYVVAGSSIPGFS 125
Query: 232 RQGMWVVDPSRTPAL------GASGAVNAIMLLDIFLNPKATLYFDFFIPVPA----FLL 281
+W V + +L GASGA+ AI+L + P+ + F F +P+P F++
Sbjct: 126 LSDIWAVAAANGASLNSWTTVGASGAIYAILLAFGMIFPEERI-FIFPLPIPIKAKWFVM 184
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGG 308
G I + I ++ AHLGG
Sbjct: 185 GYAAI-ELFSAIATTGDGVAHIAHLGG 210
>gi|386812611|ref|ZP_10099836.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386404881|dbj|GAB62717.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 291
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 124 SEVVYGLIIANTAVFMLWRI-------ADPKFMANNFTI-----------SLDNFLS--- 162
++V+ LIIAN +VFML + P+ ++ + + D F
Sbjct: 17 TQVIMVLIIANASVFMLQLLFSTVSSQWSPQTTVSDVQVEYTPVQQWSYPAFDTFTKLFW 76
Query: 163 ---------GRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
G L T F H H++ NM+ L+ FG + R LG L LY
Sbjct: 77 LYPPDALGHGWLWQFFTYMFLHSTANPWHLIFNMLVLWMFGSEVERVLGSRRFLTLYFTA 136
Query: 212 AIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFD 271
I + ++ + +M +GASGA+ AI + P +T+ F
Sbjct: 137 GIFAGICNCIFTPWASM-----------------VGASGAIFAIEIAFAMYFPNSTVIFY 179
Query: 272 FFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
FF +L+ +F I+ N+NI+ AHLGG
Sbjct: 180 FFPIKAKYLVMIFTSITIFNCILPRNNNIAHFAHLGG 216
>gi|239609879|gb|EEQ86866.1| rhomboid family protein [Ajellomyces dermatitidis ER-3]
Length = 570
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ + +++ S FSH H+
Sbjct: 350 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVPLYPYS--ISIVGSIFSHQQFRHL 407
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G + LG L LY + + S+ L H Q V
Sbjct: 408 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL-------QNKLTVT-- 458
Query: 242 RTPALGASGAVNAIM 256
+LGASGA+ ++
Sbjct: 459 ---SLGASGAIAGLV 470
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 130 LIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMI 186
+I N +F L+ + ++ + ++ + L+GR L TL+T+ F H D+ H+ NM
Sbjct: 157 IIALNCIIFSLYAFSYETTDWVIEHLAMTPADILAGRELWTLVTATFLHGDLMHLAGNMY 216
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
LY G +I +G + L LY I S+ ++ S G+ P++
Sbjct: 217 FLYVVGDNIEDAVGHKKYLALYFFCGIAASL--------VSFFSNMHGL-------IPSV 261
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLIGKDMLRIIEGNSNISGS 303
GASGA+ + + A+L F + + L + +G ++ +I N + +
Sbjct: 262 GASGAIAGFFAIYLLWFRHASLTFMIVVFQKKISPVLFFIIWLGFNLFGMIMANQGVDYA 321
Query: 304 AHLGG 308
AHLGG
Sbjct: 322 AHLGG 326
>gi|18312405|ref|NP_559072.1| integral membrane protein (rhomboid related) [Pyrobaculum
aerophilum str. IM2]
gi|18159859|gb|AAL63254.1| integral membrane protein (rhomboid related), putative [Pyrobaculum
aerophilum str. IM2]
Length = 230
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T F H + HIV NMI L+ FG ++ G L LY+ + + ++ Y A +
Sbjct: 57 VTHMFLHGGLLHIVGNMIYLWVFGDNVEDHYGHFRFLALYLMWGLAAA--FVHYWAVASQ 114
Query: 229 SSKRQGMWVV-DPSRTPALGASGAVNAIMLLDIFLNPKA-TLYFDFFI-----PVPAF-L 280
++ + VV DP PA+GASGA++ ++ + L P A L FFI +PA+
Sbjct: 115 AALLSAVGVVGDPMWVPAVGASGAISGVLGAYMVLYPHARILTLTFFIVITLVEIPAWAY 174
Query: 281 LGVFLIGKDMLRIIE----GNSNISGSAHLGGAAVAALAWARIRRR 322
+G + I + +E +S ++ AH+GG AL RRR
Sbjct: 175 IGFWFIYQLFYGALEFITLQSSGVAYFAHIGGFIAGALTALIYRRR 220
>gi|149370647|ref|ZP_01890336.1| rhomboid family protein [unidentified eubacterium SCB49]
gi|149356198|gb|EDM44755.1| rhomboid family protein [unidentified eubacterium SCB49]
Length = 290
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+ +T +F H D H++ NMI L+FF + P+ L +Y+ GAI G + Y++ Y+ F
Sbjct: 63 SFLTYSFIHFDFFHLLFNMIWLHFFSRFVLNIFTPKRFLTVYLLGAIAGGLMYVLSYNVF 122
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
D + LGAS +V AIM+ +P T + F + + + +F+
Sbjct: 123 PVFE---------DGLPSVLLGASASVTAIMVFIATHSPN-TAFRLFNWTIKLWHIALFI 172
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
D++R+ G + AH GG AV +AR +G
Sbjct: 173 FVYDLIRLPIGGNAGGMLAHFGG-AVFGYIYARQLLKG 209
>gi|147919993|ref|YP_686253.1| hypothetical protein RCIX1707 [Methanocella arvoryzae MRE50]
gi|110621649|emb|CAJ36927.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 271
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH--IDVEHIVSNM 185
Y LI V++L ++ F N SL + T++T F+H + HI NM
Sbjct: 85 YILIGLTVLVYILQKLLPVSFTYNYLAFSLSSLFYAPW-TIVTQVFAHDWFSLFHIFFNM 143
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMA-GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
+ L+FFG + R +G L LY+ G + G L++ P
Sbjct: 144 LALFFFGPLLERQIGSGRFLGLYLGTGILAGLAQVLIFPG------------------AP 185
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
LGASGA+ IM + L P ++ FFIP+ + V L L ++ I+ A
Sbjct: 186 VLGASGAIMGIMGTLVVLMPNLRIWL-FFIPM-KLIYAVILFALYDLILLPSGDMIAHGA 243
Query: 305 HLGGAAVAALAWARIRRR 322
HL G + +++R
Sbjct: 244 HLVGLLAGVIFGLMLKKR 261
>gi|409124088|ref|ZP_11223483.1| transmembrane rhomboid family protein [Gillisia sp. CBA3202]
Length = 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 30/213 (14%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLW-RIADPKFMAN----------NFTISL 157
FRY+ ++ + VV LI N VF+L+ I F+ N F L
Sbjct: 6 KFRYKLQT-------ATVVEKLIAINVVVFILFFLIKTIAFLFNLPSDFITEWLVFPKEL 58
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
F+ + ++IT +F H + HI+SNM+ LY+ G+ P+ LL Y G + G++
Sbjct: 59 GEFVF-KPWSIITYSFLHSGIWHILSNMLILYYAGIYFLNYFSPKKLLTFYFLGVVIGAL 117
Query: 218 FYLV-YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276
Y++ Y+ F A + ++ +GAS V ++++ P + F +
Sbjct: 118 VYMLSYNLFPAFEA---------TGKSYLVGASAGVMSVLVGVATKVPNMKIRLMFLGSI 168
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
+ + FL+ D+++I GN+ AHLGGA
Sbjct: 169 KFWYIAAFLVVIDIIQIPFGNAG-GHFAHLGGA 200
>gi|294827700|ref|NP_710831.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073007|ref|YP_005987324.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|421084984|ref|ZP_15545839.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421102026|ref|ZP_15562636.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|293385543|gb|AAN47849.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353456796|gb|AER01341.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|410368171|gb|EKP23549.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432377|gb|EKP76733.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456826075|gb|EMF74445.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456982498|gb|EMG19087.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 197
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFILFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + +P + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNLG--NPHYS-TLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLIYTYFSSKSGAADGINHDAHLWGA 172
>gi|410027785|ref|ZP_11277621.1| hypothetical protein MaAK2_01234 [Marinilabilia sp. AK2]
Length = 209
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+ S H D H++ NM YFFG + E L M + G VF Y + +
Sbjct: 47 VLSGLIHKDQMHLLFNMFTFYFFGRVV------EMFLLYRMGKSTGLMVFLFFYFGAIVV 100
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
S + R ALGASG V A + I + P + + I +P F+LG+ +
Sbjct: 101 SDLPTYFKHKENYRYRALGASGGVAAAVFASIMIMPLSDICLFGLICLPGFVLGLLFLIY 160
Query: 289 DMLRIIEGNSNISGSAHLGGA 309
++ +G+ I+ AHL GA
Sbjct: 161 TFVQARKGSDGINHDAHLYGA 181
>gi|379730313|ref|YP_005322509.1| rhomboid family protein [Saprospira grandis str. Lewin]
gi|378575924|gb|AFC24925.1| rhomboid family protein [Saprospira grandis str. Lewin]
Length = 320
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
TL + F H + H++ NM+ LY+FG + L + +Y++ + G +F+L+ Y+ F
Sbjct: 72 TLFSYMFLHSGIWHLLMNMLVLYWFGRLLNNLLKDRQIWGIYLSSGLSGGLFFLLSYNLF 131
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
A + S +GAS V ++L L PKA++ F V + +
Sbjct: 132 PAFYGQ--------SSTAVIVGASAGVMGVVLAAAALTPKASMRFILIGNVQLQYVALAF 183
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ D++ + NS AHLGGAA+ L +RR
Sbjct: 184 VLIDLVSVSLNNSG-GHLAHLGGAAMGWLFIYLLRR 218
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + LITS F H + EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 195 NVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN-- 252
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
FL++S + T + GASGA+ ++ I + + +Y I
Sbjct: 253 ------FLSLSFN---------TDTVSAGASGAIFGLIGAIIVMMIISKVYSRKMIGQLL 297
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
L V LIG +L SN++ AHLGG
Sbjct: 298 IAL-VILIGFSLLL-----SNVNIMAHLGG 321
>gi|443475962|ref|ZP_21065890.1| Peptidase S54, rhomboid domain [Pseudanabaena biceps PCC 7429]
gi|443019115|gb|ELS33256.1| Peptidase S54, rhomboid domain [Pseudanabaena biceps PCC 7429]
Length = 217
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL----------SGRLHTLITSA 172
+S VVY LI+ N +F ++ + P F + L+N+ S L++S
Sbjct: 13 TSIVVYTLILVNVLIFG-YQTSLPNFQLGEW---LENWALFPKELVANPSKHAIALLSSQ 68
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSK 231
F H + H+V NM LY FG +I LG L Y+ G I G
Sbjct: 69 FLHGSIFHLVGNMWFLYLFGNNIEDRLGHWKFLFFYLICGVIAGI--------------- 113
Query: 232 RQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKATL----YFDFF---IPVP-AFLLG 282
G V P S P +GASGA++ +M + P+A + + FF IP+P A LG
Sbjct: 114 --GQVVTAPTSMVPMVGASGAISGVMGAYLIRFPRARILSLVFLGFFVTAIPIPAAVFLG 171
Query: 283 VFLIGKDMLRIIEGNSNISGS---AHLGGAAVAALAWARIRRRG 323
+++ G+ + + N N+ G AH+ G V A+A I + G
Sbjct: 172 LWIAGQTVYAAMA-NPNLPGIAYLAHISGFGVGAIAMFLISKFG 214
>gi|374704263|ref|ZP_09711133.1| rhomboid family protein [Pseudomonas sp. S9]
Length = 470
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L L + F H H+ NM+ L+ FG ++ LG L LY+ + + +
Sbjct: 124 LEGLFGAMFLHGSFSHLAGNMLFLFIFGFALEIALGRWLYLGLYLTCGVASHLLW----- 178
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF---------IP 275
W++DP+ +GASGA++ +M ++L +FF
Sbjct: 179 -----------WIMDPAWVTGVGASGAISGLM--GMYLAIYGLRRINFFYWLGPLFGYFR 225
Query: 276 VPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
PA + +GK++ ++ N N + AHLGG LA
Sbjct: 226 APALWILPVWMGKELYGLLMANDNTNYYAHLGGLGAGFLA 265
>gi|440750147|ref|ZP_20929391.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436481188|gb|ELP37369.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 263
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 135 TAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMS 194
+A+F L+ I P+F+ F +T F H D H+ SNM GL+ FG
Sbjct: 31 SAIFALYHIQSPRFIPTQF---------------LTYMFMHADGWHLFSNMFGLFVFGPL 75
Query: 195 IGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ +GP+ LL L+M +G V Y Y +F
Sbjct: 76 LEEFIGPKKLLTLWMVCGVGAGVLYSGYTSF 106
>gi|281203870|gb|EFA78066.1| hypothetical protein PPL_08712 [Polysphondylium pallidum PN500]
Length = 429
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 108 ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFM---ANNFTISLDNFLSGR 164
SF R S + + + +I N A+F+L + +P F +N+F S+ N +S
Sbjct: 151 GSFIERILSRFKITEGTLTIASIIALNGAIFLLLK--NPAFFNRYSNHFFCSVHN-ISSH 207
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+ S F+HI+ H + NM+GL+ FG +G L LY+ G + G++ + +
Sbjct: 208 PMCLLLSNFTHIEGFHFLFNMVGLWSFGQVAYEYMGMLPFLALYVGGGLMGTLTSVTHK- 266
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP--KATLYFDFFIPVPAFLLG 282
+ P++GASG V A++ I P + ++ F F+ + +
Sbjct: 267 -----------LITRGFNIPSIGASGCVLAVVAASILFEPNNRVSIIFLPFLSFESHTML 315
Query: 283 VFLIGKDMLRIIEGN--SNISGSAHLGGAAVAALAWARIRRR 322
LI D+ ++ +N S HLG A+ R +
Sbjct: 316 YALIAFDLAGVLGLGRFTNWDHSCHLGSTLAGAILADSYRYK 357
>gi|126663854|ref|ZP_01734849.1| hypothetical protein FBBAL38_10242 [Flavobacteria bacterium BAL38]
gi|126624118|gb|EAZ94811.1| hypothetical protein FBBAL38_10242 [Flavobacteria bacterium BAL38]
Length = 208
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG + +S F H+D +H+ NM LYFF + Y L +Y+ + G++
Sbjct: 38 SGEQLRMFSSGFLHVDFQHLFFNMFTLYFFAPYVIYNTTVLYFLYIYIGSLLAGNLLTFY 97
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+H + A+GASGAV ++ I L P +Y F +P ++
Sbjct: 98 FHK--------------NDYSYRAVGASGAVTGVIFSAILLEPNLYMY-GF---IPGYIF 139
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGA 309
G + + + N NI AH GGA
Sbjct: 140 GFAYLLFSIYGMKAKNDNIGHVAHFGGA 167
>gi|448324757|ref|ZP_21514169.1| rhomboid family protein [Natronobacterium gregoryi SP2]
gi|445617720|gb|ELY71313.1| rhomboid family protein [Natronobacterium gregoryi SP2]
Length = 307
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 167 TLITSAFSHID--VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T +TS F+H + HIV N I ++FFG + R +G + ++ ++V A
Sbjct: 124 TWVTSTFAHSPGMLTHIVFNSIVIFFFGPIVERYVGSKKF-----------AILFVVSGA 172
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+S + ++ TP LGASGA AIM + LNP +Y F IP+P ++L
Sbjct: 173 LAGLSQIT--LTALEGGTTPVLGASGAALAIMGVITILNPNLKVYLFFMIPMPLWVL 227
>gi|429192000|ref|YP_007177678.1| hypothetical protein Natgr_2046 [Natronobacterium gregoryi SP2]
gi|429136218|gb|AFZ73229.1| putative membrane protein [Natronobacterium gregoryi SP2]
Length = 319
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 167 TLITSAFSHID--VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T +TS F+H + HIV N I ++FFG + R +G + ++ ++V A
Sbjct: 136 TWVTSTFAHSPGMLTHIVFNSIVIFFFGPIVERYVGSKKF-----------AILFVVSGA 184
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+S + ++ TP LGASGA AIM + LNP +Y F IP+P ++L
Sbjct: 185 LAGLSQIT--LTALEGGTTPVLGASGAALAIMGVITILNPNLKVYLFFMIPMPLWVL 239
>gi|90420254|ref|ZP_01228162.1| possible serine protease, rhomboid family [Aurantimonas
manganoxydans SI85-9A1]
gi|90335588|gb|EAS49338.1| possible serine protease, rhomboid family [Aurantimonas
manganoxydans SI85-9A1]
Length = 290
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T +F H+D+ HI NM+ L+ FG ++ G V +LV++ A
Sbjct: 123 LTYSFLHLDIWHIGGNMLFLWVFGDNVEDAF---------------GHVKFLVFYLACAA 167
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF--IP--VPAFLLGVF 284
+ + S +GASGAV+ + + L+P+ ++ F IP +PA+LL +
Sbjct: 168 AGAGLHALMFPGSEATLIGASGAVSGVAAAYLMLHPRVWVWVLAFGRIPLNLPAWLLLMV 227
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
IG + G ++S +AH GG A +RRRG
Sbjct: 228 WIGLQFVLFASGAEDVSYAAHAGGILAGAALTLVLRRRG 266
>gi|418731204|ref|ZP_13289617.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|410774099|gb|EKR54118.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 197
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL TS F H D H++ NM+ Y FG ++ T+GP + Y+ + SV
Sbjct: 41 YTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFVLFYLGTILITSVI------- 93
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVF 284
S R+ + +P + LGASG V ++ I P +LY F IP+P + V
Sbjct: 94 ----SWRKNLG--NPHYS-TLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVL 146
Query: 285 LIGKDMLRIIEGNSN-ISGSAHLGGA 309
+ G ++ I+ AHL GA
Sbjct: 147 YLIYTYFSSKSGAADGINHDAHLWGA 172
>gi|198274049|ref|ZP_03206581.1| hypothetical protein BACPLE_00186 [Bacteroides plebeius DSM 17135]
gi|198273127|gb|EDY97396.1| peptidase, S54 family [Bacteroides plebeius DSM 17135]
Length = 297
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRI-----------ADPKFMANNFTISLDNFLSGRLHT 167
R++ ++V L+ N AVF++ + A P + F+ R T
Sbjct: 12 RKFQQGDIVLRLVYVNVAVFLVVTLVQIFLTLFNVLASPWMNYLELPAWTETFIR-RPWT 70
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAFL 226
LIT F H V HI+ NM+ L++FG ++L LY G I G + Y L Y+ F
Sbjct: 71 LITYMFMHAGVLHILFNMLWLFWFGRLFLAFFSSKHLRGLYFLGGICGGLLYMLAYNVFP 130
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
VV S LGAS +V AI++ P + F F V + +F++
Sbjct: 131 YFQD------VVYSSYL--LGASASVLAIVVAVSVREPNYPVQFLFIGTVRLKYVALFMV 182
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
D+L + N+ AHLGGA
Sbjct: 183 ALDLLFMTSENAG-GHIAHLGGA 204
>gi|448330906|ref|ZP_21520182.1| rhomboid family protein [Natrinema versiforme JCM 10478]
gi|445610742|gb|ELY64511.1| rhomboid family protein [Natrinema versiforme JCM 10478]
Length = 300
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 142 RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
R+ P+ M F L + + T +TS F+H HIV N I ++FFG + R +G
Sbjct: 98 RVFGPELMQTLFV--LRPYYPQYVWTWVTSIFAHGGFMHIVGNSIVIFFFGPLVERYVGS 155
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP----ALGASGAVNAIML 257
L++A + LA + + P+ P +GASGA AI+
Sbjct: 156 RKFAILFLASGV------------LAGLGQIGIQIIQTPTVMPFTPGVVGASGAALAILG 203
Query: 258 LDIFLNPKATLYFDFFIPVPAFLL--GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+ LNP +Y F +PVP +LL G I L G I+ AHL G + L
Sbjct: 204 VLTVLNPGLKVYLYFILPVPIWLLTAGYAFISVAFLS-TGGGGGIAHMAHLVGLLI-GLG 261
Query: 316 WARIRRR 322
+ +R
Sbjct: 262 YGEYVKR 268
>gi|419759794|ref|ZP_14286081.1| rhomboid family protein [Thermosipho africanus H17ap60334]
gi|407515171|gb|EKF49951.1| rhomboid family protein [Thermosipho africanus H17ap60334]
Length = 233
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S + I+ F H HI+ NM L+ FG ++ LG L Y+ G + F++
Sbjct: 76 SNPIFPFISHMFVHGGWSHILGNMWFLWIFGDNVEDRLGHFNYLLFYLTGGLFALFFHMS 135
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM---LLDIFLNPKATL---YFDFFIP 275
++ F S P +GASGA++A+M ++ + + +L + F I
Sbjct: 136 FNLF---------------SPYPLVGASGAISAVMGAYFVNFWYSKIVSLVIWFVPFLIE 180
Query: 276 VPAFLLGVFLIGKDMLRIIEGN-SNISGS-----AHLGGAAVAALAWARIRRR 322
+PAF ++L ++I+ G SNI+GS AH GG + +R+RRR
Sbjct: 181 IPAF---IYLFIWFTIQILNGTLSNITGSGVAYWAHAGGFIYGMIIGSRVRRR 230
>gi|389792719|ref|ZP_10195903.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
gi|388435906|gb|EIL92795.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
Length = 201
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMIGL 188
+IIA T V +P+ M N+ + R + L+T H D H++ NM L
Sbjct: 6 IIIAITCVVSYLAFRNPRLM-NDLILWPPAIARQREYYRLVTYGLVHADFGHLLFNMFTL 64
Query: 189 YFFGMSI----GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
+FFG + + LG + Y IGG VF + L K + DP+
Sbjct: 65 FFFGRVMEGFFAQRLGSFGFVLFY----IGGLVF-----SILPTYLKHRN----DPNYR- 110
Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSA 304
+LGASGAV+A++ I L P + +P+PA + V + G N++ SA
Sbjct: 111 SLGASGAVSAVLFAFILLAPWQRI-LVLVVPMPAIVYAVLYTAYSIYMDRRGQGNVNHSA 169
Query: 305 HLGGAAVAAL 314
HL GAA +
Sbjct: 170 HLWGAAYGVI 179
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + LITS F H + EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 195 NVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN-- 252
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
FL++S + T + GASGA+ ++ I + + +Y I
Sbjct: 253 ------FLSLSFN---------TDTVSAGASGAIFGLIGAIIAMMIISKVYSRKMIGQLL 297
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
L V LIG +L SN++ AHLGG
Sbjct: 298 IAL-VILIGFSLLL-----SNVNIMAHLGG 321
>gi|323343528|ref|ZP_08083755.1| rhomboid family protein [Prevotella oralis ATCC 33269]
gi|323095347|gb|EFZ37921.1| rhomboid family protein [Prevotella oralis ATCC 33269]
Length = 311
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF----- 218
++ L T F H EHI NM+ L+ FG + R G + L Y+ +G +F
Sbjct: 53 HIYQLFTYMFMHAGFEHIFFNMLMLWMFGCVVERVWGAKKFLFYYICCGVGAGLFQELAQ 112
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPAL------GASGAVNAIML-LDIFLNPKATLYFD 271
++ ++ F + + + + AL GASGA+ AI+L + + + +F
Sbjct: 113 FMQFYFFTSNNYPGVEFTTIVKAAGSALNGWTTVGASGAIYAILLAFGMTFSEEKMFFFP 172
Query: 272 FFIPVPAFLLGVFLIGKDM-LRIIEGNSNISGSAHLGG 308
F IP+ A V G ++ L +++ AHLGG
Sbjct: 173 FPIPIKAKWFVVICAGIELFLSFTSTGDHVAHVAHLGG 210
>gi|345868399|ref|ZP_08820387.1| rhomboid family protein [Bizionia argentinensis JUB59]
gi|344047159|gb|EGV42795.1| rhomboid family protein [Bizionia argentinensis JUB59]
Length = 216
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G+ +V ++IA A+ +D F + ++ + G + +S F H+D H+
Sbjct: 2 GNLSIVIIVVIAANALISFKGFSDFSFF-EKYKFNIGAIVRGEKIRMFSSGFLHVDTSHL 60
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM L+ F + LG L +Y+ + G++ L +H +
Sbjct: 61 FFNMFSLFIFADVVLVFLGNFKFLIVYIGSLLLGNLLSLYFHK--------------EEH 106
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFF-IPVPAFLLGVFLIGKDMLRIIEGNSNI 300
A+GASGAV I+ I L P +LY F IP+PA++ G+ + + + NI
Sbjct: 107 HYSAVGASGAVMGIVYAAILLQPNMSLYLFFIPIPIPAYIFGIGYLLYSIYGMKNRVGNI 166
Query: 301 SGSAHLGGA 309
AH GGA
Sbjct: 167 GHDAHFGGA 175
>gi|218131483|ref|ZP_03460287.1| hypothetical protein BACEGG_03101 [Bacteroides eggerthii DSM 20697]
gi|217986415|gb|EEC52752.1| peptidase, S54 family [Bacteroides eggerthii DSM 20697]
Length = 227
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 23/214 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L+I N +F+ +A + N + L FL+G + LIT F H H+ NM
Sbjct: 11 LLIINVLMFLGTVVAQSYGIDLNQYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFA 70
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVYHAFLAMSSKRQGMWVVDPSR 242
++ FG + + GP+ L Y+ IG V Y+ Y L+ + V P +
Sbjct: 71 VWMFGRILEQVWGPKRFLFYYLVCGIGAGLIQELVQYIHYETVLSAYDSVNTGYSVIPMK 130
Query: 243 T-----PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+GASG+V AI+L L P + F F +P P F+IG ++ + G
Sbjct: 131 EYLNMMTTVGASGSVYAILLGFGMLFPNQPM-FIFPLPFP-IKAKYFVIGYALIELYSGF 188
Query: 298 SNISGS-----AHLGGAA---VAALAWARIRRRG 323
+N G AHLGG + + W R + RG
Sbjct: 189 ANNPGDNVAHFAHLGGMIFGFILIMYW-RKKNRG 221
>gi|373955987|ref|ZP_09615947.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
gi|373892587|gb|EHQ28484.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
Length = 288
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L+ R T T F H + H++ NM+ ++ G LG + L+ LY+ G + G++ Y+
Sbjct: 66 LATRFWTPFTYMFMHGGILHLLFNMLWFFWIGQIFEEYLGGKKLITLYILGGLAGALVYV 125
Query: 221 V-YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
V Y+ F + ++ +GA+ +V A+++ L P T+ FF V
Sbjct: 126 VAYNVFPLFTEVKE--------TANTVGATASVMAVIVGTATLLPDYTISMMFFGAVKLK 177
Query: 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
L + I D+L I+ N+ AHLGGA + + ++R
Sbjct: 178 WLAIVYILFDLLSIVGPNAG-GEFAHLGGALLGFIYIKQLRN 218
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + LITS F H + EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 199 NVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN-- 256
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
FL++S + T + GASGA+ ++ I + + +Y I
Sbjct: 257 ------FLSLSFN---------TDTVSAGASGAIFGLIGAIIAMMIISKVYSRKMIGQLL 301
Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
L V LIG +L SN++ AHLGG
Sbjct: 302 IAL-VILIGFSLLL-----SNVNIMAHLGG 325
>gi|302669450|ref|YP_003829410.1| peptidase [Butyrivibrio proteoclasticus B316]
gi|302393923|gb|ADL32828.1| membrane-associated peptidase rhomboid family [Butyrivibrio
proteoclasticus B316]
Length = 216
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
+ Y SS V L+I N +F+L + P + G H L+T+ F H D+
Sbjct: 18 KIYKSSYVTIALVIINAVIFVLGSMFFPFIYTIGVMYTPSVLQDGEYHRLVTAMFLHQDI 77
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ +NM+ L G I LG +YMA I G++ + Y + + WV
Sbjct: 78 NHLFNNMMILLLVGAIIENYLGHVAYGIMYMAAGIFGNLLSMAYEV------RNEVTWV- 130
Query: 239 DPSRTPALGASGAVNAIM 256
+LGASGAV I+
Sbjct: 131 ------SLGASGAVMGIV 142
>gi|149280308|ref|ZP_01886430.1| putative transmembrane rhomboid family protein [Pedobacter sp.
BAL39]
gi|149228997|gb|EDM34394.1| putative transmembrane rhomboid family protein [Pedobacter sp.
BAL39]
Length = 250
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 51/227 (22%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG---------RLHTLITSAFSHI 176
VV L+I N F K++ NN ++ ++L G R+ L+T F H
Sbjct: 9 VVKNLLIINVLFF------AAKYVLNNIGLANLDYLLGAFYIDSPFFRVWQLVTYMFMHG 62
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG------GSVFYLVYH------- 223
D+ HI NM L+ FG I G + L Y+ +G G Y VYH
Sbjct: 63 DIAHIFFNMFALFMFGGVIESRWGAKRFLNFYLITGLGAVALQLGVQAYEVYHITGSIFN 122
Query: 224 -AFLAMSSKRQGMW--VVDPSRT-------------PALGASGAVNAIMLLDIFLNPKAT 267
M QG+ + P + P +GASGAV +++ L P
Sbjct: 123 SGITDMELVNQGIQANISIPGLSEEEKNTLLGIYGFPMVGASGAVFGLLVAFGMLYPNTE 182
Query: 268 LYFDFFIPVP---AFLLGVFLIGKDMLRI--IEGNSNISGSAHLGGA 309
LY IP+P F++ ++++ + L + I G+S I+ AHLGGA
Sbjct: 183 LYI-MLIPIPIKAKFIIPIYILAELFLGVARIPGDS-IAHYAHLGGA 227
>gi|427707669|ref|YP_007050046.1| rhomboid family protein [Nostoc sp. PCC 7107]
gi|427360174|gb|AFY42896.1| Rhomboid family protein [Nostoc sp. PCC 7107]
Length = 225
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYL 220
G TLITS F H H++SNM+ L+ FG +I LG +YL +FYL
Sbjct: 58 DGEWITLITSQFLHGGWWHLISNMVFLWVFGNNIEDRLGHFKYL------------IFYL 105
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFF--- 273
A A+ GM S P+LGASGA++ ++ + P A ++ FF
Sbjct: 106 TCGALAALCQWAIGM----NSPIPSLGASGAISGVLGAYLIRFPHARITTLIFLGFFATT 161
Query: 274 IPVPAF-LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
I VPA ++G+F + +I G +++ +A++ + WA I
Sbjct: 162 ISVPALVVIGIFFVQN----VISGLASLQAAANMSVQSGGVAYWAHI 204
>gi|325299446|ref|YP_004259363.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324318999|gb|ADY36890.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 298
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAF 225
TL+T F H + HI+ NM+ LY+FG +L LY+ G I G+ Y L Y+ F
Sbjct: 71 TLLTYMFMHAGILHILFNMLWLYWFGRLFLGFFSARHLRGLYVLGGIAGAALYMLAYNLF 130
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
++ LGAS +V AI++ P + F F V + VF+
Sbjct: 131 PYFEDAVYSSYL--------LGASASVLAIVVATAVREPDYPVQFMFIGTVRLKYVAVFM 182
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
+ D+L + N+ AHLGGA
Sbjct: 183 VALDLLFMTADNAG-GHLAHLGGA 205
>gi|217077218|ref|YP_002334936.1| rhomboid family protein [Thermosipho africanus TCF52B]
gi|217037073|gb|ACJ75595.1| rhomboid family protein [Thermosipho africanus TCF52B]
Length = 233
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S + I+ F H HI+ NM L+ FG ++ +G L Y+ G + F++
Sbjct: 76 SNPIFPFISHMFVHGGWSHILGNMWFLWIFGDNVEDRMGHFNYLLFYLTGGLFALFFHMA 135
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM---LLDIFLNPKATL---YFDFFIP 275
++ F S P +GASGA++A+M ++ + + +L + F I
Sbjct: 136 FNLF---------------SPYPLVGASGAISAVMGAYFVNFWYSKIVSLVIWFVPFLIE 180
Query: 276 VPAFLLGVFLIGKDMLRIIEGN-SNISGS-----AHLGGAAVAALAWARIRRR 322
+PAF ++L ++I+ G SNI+GS AH GG + +R+RRR
Sbjct: 181 IPAF---IYLFIWFTIQILNGTLSNITGSGVAYWAHAGGFIYGMIIGSRVRRR 230
>gi|300770522|ref|ZP_07080401.1| cytoplasmic membrane protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300762998|gb|EFK59815.1| cytoplasmic membrane protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 208
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R++T+ TS H D H++ NMI Y+FG L ++ ++ G + + +
Sbjct: 49 RVYTIFTSGLIHKDWGHLLFNMITFYYFGFG---------LESIFAGISVWGHFLFAILY 99
Query: 224 AFLAMSSKRQGMWVVDPSRTP---ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280
+ S +V P +LGASGA++A++ I +P+A L F IP+ A+L
Sbjct: 100 LLSLILSDIPT--IVQQKNNPGYYSLGASGAISAVLFGYILFDPQAELGIFFVIPMKAYL 157
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAH 305
V +G + N I+ SAH
Sbjct: 158 FAVLFMGYSYWASRKANDGINHSAH 182
>gi|425736005|ref|ZP_18854315.1| Rhomboid family protein [Brevibacterium casei S18]
gi|425478939|gb|EKU46122.1| Rhomboid family protein [Brevibacterium casei S18]
Length = 208
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 168 LITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
L+T A H H+++NMIGL+FFG + R LG L +Y+ GAIGGSV L
Sbjct: 36 LLTVALVHEQPSPIHLLANMIGLFFFGSFVERALGRGRFLAVYLLGAIGGSVMVL----L 91
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
LA R WV T +GASGAV AI+ + L P L + L V
Sbjct: 92 LAEPWSRD--WV-----TNNIGASGAVFAII--GVLLVPTKRLDRNI---TGVVLFVVLN 139
Query: 286 IGKDMLRIIEGNSNISGSAHLGG 308
G L +EG +S AHLGG
Sbjct: 140 FGYGFL--VEG---VSWEAHLGG 157
>gi|386820316|ref|ZP_10107532.1| putative membrane protein [Joostella marina DSM 19592]
gi|386425422|gb|EIJ39252.1| putative membrane protein [Joostella marina DSM 19592]
Length = 287
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
+++T AF H H+ NM+ LYF Y L +Y GA+ GG+ F L Y+ F
Sbjct: 64 SIVTYAFFHGGFMHLFWNMLLLYFSSRIFLNLFSKRYFLNVYFLGAVLGGAFFLLSYNIF 123
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
S +P +GAS A+ AI++ P + FF + + LGV
Sbjct: 124 PVFSR----------VNSPLIGASAAIMAILIFVCTYIPNQEVRLIFF-NIKLWYLGVAF 172
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ D++++ GNS AHLGGA + + +++
Sbjct: 173 VLLDLVQLPLGNSG-GHIAHLGGALLGYVYAKKLQE 207
>gi|363737050|ref|XP_422588.3| PREDICTED: presenilin associated, rhomboid-like [Gallus gallus]
Length = 310
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 22/233 (9%)
Query: 82 LSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFML 140
L S+++ F + + + P++ +FR + SW + V G+I AN +F L
Sbjct: 54 LKSRVQSYFEEARADWLDKIRPQKR-GNFRKQVNSWWNNLTEGQRTVTGIIAANVFIFCL 112
Query: 141 WRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG 200
WR+ + + + S D ++ S FSH + H+ +NM L+ F S+ LG
Sbjct: 113 WRLPGMRRIMFTYFTS-DPSSKALCSPMLLSTFSHFSLFHMAANMYVLWSFSSSVVSLLG 171
Query: 201 PEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLD 259
E + +Y+ AG I V Y+ A + K + P+LGASGA+ ++
Sbjct: 172 CEQFIAVYLSAGVISTFVSYVAKMA----TGKFE----------PSLGASGAIMTVLAAV 217
Query: 260 IFLNPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
P+A L F+P+ F G L I D + G +AHLGGA
Sbjct: 218 CTKMPEAKLAI-IFLPMFTFTAGNALKAIIAFDTAGLALGWRFFDHAAHLGGA 269
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 38 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 97
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S
Sbjct: 98 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAAS-------- 149
Query: 238 VDPSRTPALGASGAV------NAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDML 291
LGASGA+ I++L + + + P A L+ + LI
Sbjct: 150 --------LGASGAIFGLFGATGILVLRVRADVR---------PFVALLV-INLI----- 186
Query: 292 RIIEGNSNISGSAHLGGAAVAAL 314
I G SNI+ AH+GG V L
Sbjct: 187 -ITFGWSNIAWQAHIGGLVVGVL 208
>gi|270307582|ref|YP_003329640.1| rhomboid [Dehalococcoides sp. VS]
gi|270153474|gb|ACZ61312.1| rhomboid [Dehalococcoides sp. VS]
Length = 190
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 21/159 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+ITS F H D+ H+ +NMI LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TIITSLFVHADLWHLFANMITLYFFGNALLQMINQRSWLIIFFGGGLAGSLLFILLNA-- 107
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPAFLLGVFL 285
S +GASGAV A+ L P + + F +P+P L + +
Sbjct: 108 -------------GSFGYVIGASGAVFALGGTLAVLRPNSKVMVFPLPVPIP---LWIAV 151
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
IG + I+ +++ HLGG V A I++ F
Sbjct: 152 IGSFI--ILSFLPSVAWQGHLGGLLVGAACGYLIKQGKF 188
>gi|242208888|ref|XP_002470293.1| predicted protein [Postia placenta Mad-698-R]
gi|220730600|gb|EED84454.1| predicted protein [Postia placenta Mad-698-R]
Length = 215
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
++H + N YF ++ + LG L LY+ G I S +++H ++ KR
Sbjct: 81 KLDHFLVNAFSYYFMAPTVIQILGNARFLGLYLRGGIICSAASVLWHTYI----KR---- 132
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP--AFLLGVFLIGKDMLRII 294
+P+++ ++GASGA+ +++ + PKA++Y +P+P AF+ G+FL I+
Sbjct: 133 --NPNQS-SVGASGAIYSVLAFFACVMPKASIYIFGIVPMPAWAFVTGIFLWDTSS-AIL 188
Query: 295 EGNSNISGSAHLGGAAVAALAWARIR 320
+ + H+GG L + R+R
Sbjct: 189 DKRVGTDTAGHVGGLLAGILYFLRLR 214
>gi|255326467|ref|ZP_05367549.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
gi|255296507|gb|EET75842.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
Length = 270
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 94/224 (41%), Gaps = 51/224 (22%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
A P RSF + R W + Y LI+ N V+ L I ++M N +S
Sbjct: 61 ASSPTRSFIA-----RHW-------HITYTLILINVVVYGLQLIIPFRWMYNLGMMSGPR 108
Query: 160 FLSGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
G + LIT F H D H+V NMI L+ FG+S+ R +G L +YMA +G +
Sbjct: 109 VHHGEYYRLITHGFVHSQNDPMHMVWNMIYLFIFGVSLERMMGRWKFLFVYMAATLGAGL 168
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV- 276
+++ D R A+GASG V LY FF+ +
Sbjct: 169 ----------------SVYLFDYYRG-AVGASGGVYG-------------LYGAFFVILL 198
Query: 277 -----PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
L + LIG +++ + + NIS + H GG ALA
Sbjct: 199 LRRQKDTARLFMLLIGIGVVQSLF-HPNISHAGHFGGLVSGALA 241
>gi|400754042|ref|YP_006562410.1| rhomboid protein-like protein [Phaeobacter gallaeciensis 2.10]
gi|398653195|gb|AFO87165.1| rhomboid protein-like protein [Phaeobacter gallaeciensis 2.10]
Length = 258
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 35/205 (17%)
Query: 126 VVYGLIIANTAVFML--WRIADPKFMA---NNFTISLDNFLSG-RLHTLITSAFSHIDVE 179
V Y L++AN A+F+L + P+ + N + + SG TL+TS F H
Sbjct: 16 VTYALMVANIAIFVLTYFGYDSPRSLTALYNAYALLPAEVTSGYDWKTLLTSTFLHGSWM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G L Y+ IG + ++ +
Sbjct: 76 HLGGNMLFLWIFGDNMEDEMGHFTFLAFYLVSGIGAGLIHVASAPY-------------- 121
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAF-LLGVFLIGKDM 290
S P +GASGA+ +M + L P+A +YF F +PAF +LGV+L G
Sbjct: 122 -SLVPLVGASGAIAGVMGGYLLLFPRARVDILLILIVYFRVF-SIPAFVMLGVWL-GMQF 178
Query: 291 LRIIEGNSNISGS---AHLGGAAVA 312
L I + G AH GG V
Sbjct: 179 LGGIGSDPQAGGVAYWAHAGGFGVG 203
>gi|336255484|ref|YP_004598591.1| Rhomboid family protein [Halopiger xanaduensis SH-6]
gi|335339473|gb|AEH38712.1| Rhomboid family protein [Halopiger xanaduensis SH-6]
Length = 314
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAF 225
T TS F+H + HIV N I ++FFG + R +G +Y + ++GA+ G
Sbjct: 133 TWFTSIFAHGGLYHIVGNSIVIFFFGPLVERYVGSRDYAILFLVSGALAGL-------GQ 185
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
+A+ + G P LGASGA AI+ + LNP +Y F +PVP +LL
Sbjct: 186 IAIQIIQAGG--ASPFMGGVLGASGAALAILGVLTVLNPGLKVYLYFILPVPIWLL 239
>gi|344175451|emb|CCA88130.1| putative peptidase S54, rhomboid family [Ralstonia syzygii R24]
Length = 197
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T AF H V H+V NM G++ FG + R LG LY+A + + A +
Sbjct: 48 LVTYAFLHASVPHLVFNMFGMFMFGRDVERALGRARTGALYLASVLSAA---FTQMAVVG 104
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNP-KATLYFDFFIPVPAFLLG-VFL 285
+ + G P +GASG V ++L L P + L IP+PA+L V+
Sbjct: 105 LFTFPAG---------PIVGASGGVFGLLLAYAVLFPRRMILLLIPPIPMPAWLFATVYA 155
Query: 286 IGKDMLRIIEGNSNISGSAHLGG-AAVAALAWARIRRR 322
+ + L + +S ++ AHLGG A L W R R
Sbjct: 156 LVELTLGVSGSHSGVAHFAHLGGMAGSGVLLWRWFRGR 193
>gi|333999825|ref|YP_004532437.1| rhomboid family protein [Treponema primitia ZAS-2]
gi|333738842|gb|AEF84332.1| rhomboid family protein [Treponema primitia ZAS-2]
Length = 209
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+T F+H + HI+ NM+ L+FFG + R +G E+LL + G + G + + +Y
Sbjct: 56 LTYMFAHGSITHILFNMLALFFFGAQVERRMGSKEFLLYYLVTGVLAGVLSFCIY----- 110
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
W +GASGA+ A+ L P + +Y +P+ A V ++G
Sbjct: 111 --------WFTGAYMVQLMGASGALFAVQLAYATFFPDSMVYLWGILPLRA---PVMVLG 159
Query: 288 KDMLRIIEGNSNI-SGSAHLGGAAVAALAW 316
L + SG AHL A A W
Sbjct: 160 FTALELFSSVFGFRSGVAHLTHLAGFAFGW 189
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N F L ++A P + F + G ++ L+TSAF H + H+ NM
Sbjct: 69 VTYALIGINLLAFAL-QMASPG-LQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S
Sbjct: 127 LALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGAS 173
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 33/149 (22%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AF H + HI+ NM+ LY+ G +I LG L LY+ A+GGS F LV+
Sbjct: 114 TVLTGAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWC--- 170
Query: 227 AMSSKRQGMWVVDPSR--TPALGASGAV----NAIMLLDIFLNPKATLYFDFFIPVPAFL 280
++ PS +GASGAV A+ +L T L
Sbjct: 171 ----------LIQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTAILT--------L 212
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA 309
LG+ L+ M+ S IS H+GGA
Sbjct: 213 LGINLVYGFMV------SGISWQGHIGGA 235
>gi|389584183|dbj|GAB66916.1| hypothetical protein PCYB_102660 [Plasmodium cynomolgi strain B]
Length = 425
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 10/180 (5%)
Query: 138 FMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
F L+ +FM ++F +L+TLIT+ SH V+ ++ N I L++ G S
Sbjct: 230 FGLFNFLTLEFMYDHFCCGSKQLREKKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEM 289
Query: 198 TLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIML 257
+ + Y I S + YH S R + LGASG++++I+
Sbjct: 290 IITSKNFFLTYFISGIISSYVQICYH-----KSGRSSPY----GNVCVLGASGSISSILT 340
Query: 258 LDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAW 316
+ P +++Y + +P L ++ ++ + +G AHL G + L +
Sbjct: 341 TYTLMFPSSSIYLYGVLALPLALFTSLYCANEVYCVLTDKKDNTGHVAHLTGMFLGFLYY 400
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHI--DVEHIV 182
V Y LI N V++L I ++ + F + D +G + ++TS F H D HIV
Sbjct: 75 VTYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIV 134
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ LY FG+++ + +G L +Y+ +GGS G+ ++D
Sbjct: 135 MNMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGSF----------------GVLLLDDPT 178
Query: 243 TPALGASGA----VNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNS 298
+GASG + A +++ + L + + + G + G
Sbjct: 179 AEVVGASGGIFGLIGAYLVIMVVLRERDNIRALMIMIAVNVAFGFLVPG----------- 227
Query: 299 NISGSAHLGGAAVAALAWA 317
IS AH GG + ALA A
Sbjct: 228 -ISWQAHAGGFVIGALATA 245
>gi|387132659|ref|YP_006298631.1| peptidase, S54 family [Prevotella intermedia 17]
gi|386375507|gb|AFJ09253.1| peptidase, S54 family [Prevotella intermedia 17]
Length = 318
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 21/201 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVEHIVS 183
V L+I N F+ + I + N + L FLS H L+T F H HI+
Sbjct: 7 VTKNLLILNVLAFVAYIIFSGMGIDLNNLLGLHFFLSNDFHLWQLVTYMFMHGGYMHILM 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV--YHAFLAMSSKRQGMWVVDPS 241
NM L+ FGM + G + L YM IG + + Y ++A V +
Sbjct: 67 NMFMLWMFGMVMENVWGSKKFLLYYMVTGIGAGLCQELAQYATYMAEGLNHYQYVVTEMG 126
Query: 242 RTP---------ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI-GKDML 291
R P +GASGAV ++L P + F IP+P L ++I G +
Sbjct: 127 RMPMENYLSRWTTVGASGAVYGVLLAFGLTFPNERM---FIIPIPIPLKAKWIIFGSIAI 183
Query: 292 RIIEG----NSNISGSAHLGG 308
+ N ++ AHLGG
Sbjct: 184 ELFSAMGTSNDGVAHLAHLGG 204
>gi|383621732|ref|ZP_09948138.1| rhomboid family protein [Halobiforma lacisalsi AJ5]
gi|448702581|ref|ZP_21700014.1| rhomboid family protein [Halobiforma lacisalsi AJ5]
gi|445777142|gb|EMA28112.1| rhomboid family protein [Halobiforma lacisalsi AJ5]
Length = 321
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYH 223
T +TS F+H ++ HIV N I ++FFG + R +G + L++ +GA+ G
Sbjct: 137 TWVTSVFAHDPSNIFHIVFNSIVIFFFGPIVERYVGSKKFAILFVVSGALAG-------- 188
Query: 224 AFLAMSSKRQGM-WVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
LA ++ + G + P LGASGA AIM + LNP +Y F IP+P ++L
Sbjct: 189 --LAQTAIQIGQGYAAIPGIGGVLGASGAALAIMGVITILNPNLRVYLMFMIPMPLWVL 245
>gi|228473087|ref|ZP_04057844.1| rhomboid family protein [Capnocytophaga gingivalis ATCC 33624]
gi|228275669|gb|EEK14446.1| rhomboid family protein [Capnocytophaga gingivalis ATCC 33624]
Length = 210
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+++ F H EH++ NMI L+FF I +G + + +Y+ + G++F L +
Sbjct: 47 LLSAGFLHAGWEHLIFNMISLFFFHKVILVGMGVDVFMLIYIGAIVFGNLFCLYIY---- 102
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ Q + A+GASG V+ I+ I L P + F +P +L G G
Sbjct: 103 ---RHQPYY-------SAIGASGGVSGIIFASIALMPHLRVNF-----IPGWLFGTIYFG 147
Query: 288 KDMLRIIE--GNSNISGSAHLGGA 309
+ R+++ N+ +AHLGGA
Sbjct: 148 YSVYRMLDPRMGDNVGHAAHLGGA 171
>gi|189461650|ref|ZP_03010435.1| hypothetical protein BACCOP_02313 [Bacteroides coprocola DSM 17136]
gi|189431622|gb|EDV00607.1| peptidase, S54 family [Bacteroides coprocola DSM 17136]
Length = 225
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 149 MANNFTISLDNFLSGRLH----------TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
+A + I ++N L LH LIT F H + +HI NM ++ FG + +
Sbjct: 24 VARRYGIDVENLLG--LHFFLVSDFNPAQLITYMFMHANFQHIFFNMFAVWMFGRVLEQV 81
Query: 199 LGPEYLLKLYMAGAIGGSVFY--LVYHAFLAMSSKRQ----GMWVVDPS----RTPALGA 248
GP+ L Y+ IG + + Y +L S GM V+ + R +GA
Sbjct: 82 WGPKRFLFYYILCGIGAGLIQEAVQYTEYLVSWSHYDGVDTGMGVIPMAEFLNRLNTVGA 141
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI---IEGNSNISGSAH 305
SGAV AI+L L P + + F F +P+P F+IG +L + I G ++ AH
Sbjct: 142 SGAVYAILLAFGMLFPNSQM-FIFPLPMP-IKAKYFVIGYAVLELVLGIAGGDGVAHFAH 199
Query: 306 LGG 308
LGG
Sbjct: 200 LGG 202
>gi|434400323|ref|YP_007134327.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
gi|428271420|gb|AFZ37361.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
Length = 230
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 43/221 (19%)
Query: 121 YGSSEVVYGLIIANTAVFM--------------LWRIADPKFMANNFTISLDNFLSGRLH 166
Y + VVY LI N AVF+ L+ + P+ ++ +F S N
Sbjct: 11 YTTPVVVYVLIGINIAVFIHQVSLGSQLNDFFQLYAVI-PRQLSASFAGSPSNQPVPEYL 69
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS F H + HI NM+ L+ FG +I +LG L Y+ G + + H F
Sbjct: 70 TLITSQFLHGGLAHIGFNMLFLWIFGNNIEDSLGHFKFLLFYL----GCGILAGLTHWFF 125
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKAT----LYFDFFIP---VPA- 278
M+S TP +GASGA+ +M I PKA L FFI +PA
Sbjct: 126 DMNSI-----------TPTVGASGAIAGVMGAYILKYPKAQILTLLPLGFFITTVRIPAV 174
Query: 279 FLLGVFLIGKDM-----LRIIEGNSNISGSAHLGGAAVAAL 314
F LG + + + L + E + ++ AH GG A+
Sbjct: 175 FFLGFWFVQQAFSSVASLGLPENTAGVAYWAHAGGFIFGAI 215
>gi|298386067|ref|ZP_06995624.1| rhomboid family protein [Bacteroides sp. 1_1_14]
gi|298261295|gb|EFI04162.1| rhomboid family protein [Bacteroides sp. 1_1_14]
Length = 224
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 90/218 (41%), Gaps = 35/218 (16%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------TLITSAFSHIDVE 179
LII N VF +A + I L N+L LH LIT F H
Sbjct: 8 LIIINVLVFF------GTLVAQRYGIDLTNYLG--LHFFLASDFNPAQLITYMFMHGGFS 59
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF--------YLVYHAFLAMSSK 231
HI NM ++ FG + RT GP+ L Y+A IG + Y+V ++ +
Sbjct: 60 HIFFNMFAVFMFGTVLERTWGPKRFLFYYIACGIGAGLIQEGVQYIKYIVDYSHYSQVDI 119
Query: 232 RQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
G+ + + +GASGAV AI+L L P L F F +P P F+ G
Sbjct: 120 GTGIIPMGEFLNMLTTVGASGAVYAILLAFGMLFPNNQL-FIFPLPFPI-KAKFFVFGYA 177
Query: 290 MLRIIEGNSNISGS-----AHLGGAAVAALAWARIRRR 322
++ + G +N G AHLGG + R++
Sbjct: 178 LIELYAGFANNPGDNVAHFAHLGGMIFGFILIMYWRKK 215
>gi|345303205|ref|YP_004825107.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
gi|345112438|gb|AEN73270.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
Length = 239
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L TL TS F H H++ NMI L +G S+ T+G L Y+ + G + ++
Sbjct: 62 LLTLFTSMFLHGGFAHLIGNMIYLNVYGKSLEGTIGSGRFLVFYLLSGLAGGIAHV---- 117
Query: 225 FLAMSSKRQGMWVVDPSRT-PALGASGAVNAIMLLDIFLNPKATLYFD----FFIPVPAF 279
+++P+ T PA+GASGA++ ++ + L P+AT++ FF P+ A
Sbjct: 118 ------------LMNPTSTVPAIGASGAISGVLGAYLVLFPRATVFLVVPLLFFFPIVAL 165
Query: 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
L L+I+ G ++ + + GG A WA I
Sbjct: 166 PAVFVLTWWFALQIVGGLTSAAFTQVGGGVAY----WAHI 201
>gi|268316859|ref|YP_003290578.1| rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|262334393|gb|ACY48190.1| Rhomboid family protein [Rhodothermus marinus DSM 4252]
Length = 239
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L TL TS F H H++ NMI L +G S+ T+G L Y+ + G + ++
Sbjct: 62 LLTLFTSMFLHGGFAHLIGNMIYLNVYGKSLEGTIGSGRFLVFYLLSGLAGGIAHV---- 117
Query: 225 FLAMSSKRQGMWVVDPSRT-PALGASGAVNAIMLLDIFLNPKATLYFD----FFIPVPAF 279
+++P+ T PA+GASGA++ ++ + L P+AT++ FF P+ A
Sbjct: 118 ------------LMNPTSTVPAIGASGAISGVLGAYLVLFPRATVFLVVPLLFFFPIVAL 165
Query: 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
L L+I+ G ++ + + GG A WA I
Sbjct: 166 PAVFVLTWWFALQIVGGLTSAAFTQVGGGVAY----WAHI 201
>gi|383318423|ref|YP_005379265.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379045527|gb|AFC87583.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 229
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 24/122 (19%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H+ H++SNM+ L FG+ RTLG + L++ G +
Sbjct: 74 LLTGLFIHVTWLHLLSNMLFLVIFGVPTDRTLGSARFMLLFLLGGV-------------- 119
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAF 279
+S G ++ R P +G SGAV+A++ I L P+A LYF+ F+ +PA+
Sbjct: 120 -ASNLCGAISLEGYRAPIIGCSGAVSAVVGTYIALFPRARMGLVLPLGLYFE-FVRLPAW 177
Query: 280 LL 281
+L
Sbjct: 178 ML 179
>gi|354495102|ref|XP_003509671.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Cricetulus griseus]
Length = 311
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I ANT VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDLRKEINKWWNSLSDGQRTVTGIIAANTLVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LNRTMMRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHA---FLAMSSKR 232
+ +Y+ AG I V Y+ A + AMS K
Sbjct: 243 FVAVYLSAGVISNFVSYVCKVATGRYGAMSFKE 275
>gi|333993097|ref|YP_004525710.1| rhomboid family protein [Treponema azotonutricium ZAS-9]
gi|333734512|gb|AEF80461.1| rhomboid family protein [Treponema azotonutricium ZAS-9]
Length = 213
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFL--SGRLHTLITSAFSH- 175
QY ++ GL N VF+ ++ +P+ M ++++ L G L T F H
Sbjct: 12 QYNVVLILIGL---NILVFLGEKVFYNPRAMDITDYLAMNPVLVVHGYLWQFATYMFVHD 68
Query: 176 -IDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
HI+ NM+ L+ FG + R +G E+LL + G + G ++VY
Sbjct: 69 PFSYSHIIFNMLALFIFGTQVERYMGSTEFLLYYMLTGVLAGVFSFIVY----------- 117
Query: 234 GMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
W R +GASGA+ A+ L L P+ LY +P+ A ++ + ++ +
Sbjct: 118 --WFTGSYRVFLMGASGAIFAVQLAYAVLFPRNILYLWGILPLRAPVMVLGFTALEIFFM 175
Query: 294 IEG-NSNISGSAHLGGAAVAAL 314
+ G N++ HL G A L
Sbjct: 176 VTGLGGNVAHFTHLAGFAFGWL 197
>gi|354567593|ref|ZP_08986761.1| Peptidase S54, rhomboid domain protein [Fischerella sp. JSC-11]
gi|353542051|gb|EHC11515.1| Peptidase S54, rhomboid domain protein [Fischerella sp. JSC-11]
Length = 224
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 39/211 (18%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFT-------ISLDNFLSGRLHTLITSAFSHIDV 178
+ YGLI N VF L ++ N F + L +G TL TS F H +
Sbjct: 16 LTYGLIGMNVLVF-LHQLQLSTEQLNQFLQLYAVIPVQLTTNFAGEWTTLFTSQFLHGNW 74
Query: 179 EHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H++SNM+ L+ FG +I LG +YL +FYL AF A+ W
Sbjct: 75 WHLISNMLFLFVFGNNIEDRLGHFKYL------------IFYLSCGAFAALCQ-----WF 117
Query: 238 VD-PSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFFIP---VPA-FLLGVFLIGK 288
+ S+ P+LGASGA+ I+ I P + ++ F+ +PA FL+G F I
Sbjct: 118 ISMNSQIPSLGASGAIFGILGAYIIAFPHSRVVTLIFLGIFVTTVRIPALFLIGFFFIQN 177
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
+I G +++ +A++ WA I
Sbjct: 178 ----VISGVASLQAAANMSVETGGIAYWAHI 204
>gi|448358662|ref|ZP_21547339.1| rhomboid family protein [Natrialba chahannaoensis JCM 10990]
gi|445645244|gb|ELY98250.1| rhomboid family protein [Natrialba chahannaoensis JCM 10990]
Length = 303
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +TS F+H + HI N I ++FFG + R +G L + +LV A
Sbjct: 123 TWVTSIFAHGGIVHIAFNAIVIFFFGPLVERYIGSRNFL-----------ILFLVSGAIA 171
Query: 227 AMSSKRQGMWVVDPSRTPA-LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
+S M+ P P +GASGA AIM + LNP T+Y +PV ++L V
Sbjct: 172 GLSQVAIQMY--QPGVGPGVVGASGAALAIMGVLTILNPNLTVYLYMIVPVRLWMLAV 227
>gi|399926186|ref|ZP_10783544.1| rhomboid family protein [Myroides injenensis M09-0166]
Length = 284
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL+T +F H + H++ NM+ LYF + L Y+ GA+ G +F+L+ FL
Sbjct: 65 TLLTYSFIHAGIVHLILNMLVLYFVYQLFRTFFNDKQFLTCYLLGAMVGGIFFLIGSLFL 124
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
P + +GAS AV A ++ + +P + V + + F+I
Sbjct: 125 -------------PVGSVLVGASAAVIAPLIGLVTYSPNMEVRLMLVGRVKIWYIAAFII 171
Query: 287 GKDMLRIIEGNSNISGS-AHLGGA 309
D++++ +SNI G AHLGGA
Sbjct: 172 LLDIIQL--SSSNIGGHLAHLGGA 193
>gi|375011801|ref|YP_004988789.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359347725|gb|AEV32144.1| putative membrane protein [Owenweeksia hongkongensis DSM 17368]
Length = 294
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 130 LIIANTAVF---MLWRIADPKF---MANNFTI-----SLDNFLSGRLHTLITSAFSHIDV 178
LI+ N AVF +L RI F +A+ FT S L+ R TL T F H
Sbjct: 21 LILVNLAVFVVFLLLRIIGFLFQIQLADIFTQWTALPSNLGTLATRPWTLFTYMFLHEGF 80
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAFLAMSSKRQGMWV 237
HI+ NM+ LYF G +G LL Y+ G + G + Y++ Y+ F + S V
Sbjct: 81 LHILFNMLWLYFGGRLFMEYMGGRRLLSTYILGGLAGGILYIIAYNLFPSFSEAV----V 136
Query: 238 VDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+ +R GAS V AI++ P+ + F + +++ + D++ + +GN
Sbjct: 137 ISNNR----GASAGVMAIVIGVATYAPRYPVKIFFTLNAQLWMIAAAALLMDLIYLGDGN 192
Query: 298 SNISGSAHLGGAAVAALAWARIR 320
+ AHLGGA L+ ++++
Sbjct: 193 NAGGHIAHLGGALFGYLSVSQLK 215
>gi|319788527|ref|YP_004148002.1| rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317467039|gb|ADV28771.1| Rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 234
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 24/156 (15%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G + L T+ F H D H++ N++ L FG+ R +GP L L++AG
Sbjct: 69 DGSISRLFTALFLHADWAHLLGNLVFLLIFGLPAERAMGPWRFLLLFLAGG--------- 119
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-------YFDFFI 274
A+++ + + DP R +GASGAV+A++ + L P A L F F+
Sbjct: 120 -----AIANLAAVIVIDDPHRA-VIGASGAVSAVIGAYLALFPGARLGVVLPLGLFLEFV 173
Query: 275 PVPAFLL-GVFLIGKDMLRII-EGNSNISGSAHLGG 308
PAFLL G++ + + + I ++ +AH+ G
Sbjct: 174 RAPAFLLIGIWAVLQVVFAYIGPAFGEVAWAAHVAG 209
>gi|11498616|ref|NP_069844.1| hypothetical protein AF1011 [Archaeoglobus fulgidus DSM 4304]
gi|2649584|gb|AAB90231.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 330
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTIS--LDNFLSGRLHTLITSAFSH 175
L +YG++ V LII F+ I P M F + LD L+ LITS F H
Sbjct: 128 LMKYGANNTV--LIICTILFFI--SIVAPYEMVEIFALHPRLDVLLAMPWQ-LITSMFLH 182
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
++ H NM L FFG + R LG L+++ + G+V Y+ Y S G
Sbjct: 183 VEFWHFFVNMFVLLFFGTELERRLGDRKYLEIFFVSGLAGNVGYIAY-------SYAVG- 234
Query: 236 WVVDPSRTPALGASGAVNAIM 256
S PALGAS A+ +M
Sbjct: 235 -----SFAPALGASAAIFGVM 250
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 126 VVYGLIIANTAVFMLWRI--------ADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
V YGLI N VF+L A P F + S + SG L+T+ F H
Sbjct: 70 VTYGLIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKS--DVASGEYWRLLTAGFLHFS 127
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
V HI NM+ LY G + LG L +Y+ +GGS +++ A A+++
Sbjct: 128 VMHIAVNMLSLYILGRDLELALGMFRYLAIYLIALLGGSAAVMLFEADRAVTA------- 180
Query: 238 VDPSRTPALGASGAVNAIM--LLDIFLNPKATLYFDFFIPVPAF 279
GASGA+ +M +L I L + + PVP
Sbjct: 181 ---------GASGAIYGLMGAMLVIILKARVS-------PVPVL 208
>gi|336366880|gb|EGN95226.1| hypothetical protein SERLA73DRAFT_187574 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379600|gb|EGO20755.1| hypothetical protein SERLADRAFT_477242 [Serpula lacrymans var.
lacrymans S7.9]
Length = 425
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 50/222 (22%)
Query: 134 NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGM 193
NT V++ W+I P+F+ + + + LSG +TL+TS FSH H+V+N + L FG
Sbjct: 185 NTVVYLAWKI--PRFVPSMNRSFMHHPLSGLSYTLLTSVFSHRSFLHLVANSMALISFGS 242
Query: 194 SIGRTLGPEYLLKLYMAGAIGGS---------VFYLVYHAFLAMSSKRQGMWVV------ 238
+ TL YL + G G FY+ F ++S V+
Sbjct: 243 AA--TL---YLAREQQRGPTGYQESTTKWHFLAFYVAAGLFSGLASHAASTKVLFPRLVS 297
Query: 239 ---DPSRT-------------------PALGASGAVNAIMLLDIFLNPKAT---LYFDFF 273
PS T P+LGASGA+ A + L P A+ ++ FF
Sbjct: 298 QLSKPSGTLAAGTVAKSAAGATAKEILPSLGASGAIYAAVTLSALAFPDASISLIFLPFF 357
Query: 274 -IPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
IP+ + + + I D + I+ G AHL GA L
Sbjct: 358 AIPIQSGVGAI--IALDAIGILRGWKMFDHYAHLSGATFGVL 397
>gi|336173007|ref|YP_004580145.1| rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
gi|334727579|gb|AEH01717.1| Rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
Length = 286
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
++IT AF H V H+ NM+ L+F + L +Y GAI GG F L Y+ F
Sbjct: 60 SIITYAFLHYKVLHLAFNMLWLWFCSRMFLNLFSSKMALNIYFLGAISGGLTFLLFYNVF 119
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
S S P +GAS AV A+ + P L F F + + +G L
Sbjct: 120 PTFFSN---------SFFPLVGASAAVRALFIFLCAYMPNNDLRF-FSFNIKLWHVGAVL 169
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L + N AHLGGA
Sbjct: 170 IGFDILGVFGSNGG-GNLAHLGGA 192
>gi|395819378|ref|XP_003783069.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial-like [Otolemur
garnettii]
Length = 518
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGS-SEVVYGLIIANTAVFMLWRIAD- 145
+S+FDG + + FR W + V G+I A+ VF +WR+
Sbjct: 269 QSYFDGIKADWSDSIKPQKEGDFRKEINKWWNNLSDGQQTVTGIIAADIFVFCVWRVPSL 328
Query: 146 PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L + ++ S FSH + H+ +NM L+ F S G E
Sbjct: 329 QRTMIRYFT---SNPASKVLCSPMLLSTFSHFSIFHMAANMSVLWSFSPSKVNIXGQEQF 385
Query: 205 LKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
+ +Y+ AG I V Y+ +++ R G P+LGASGA+ ++
Sbjct: 386 MAVYLSAGVISNFVSYMC-----KVATGRYG---------PSLGASGAIMTLL 424
>gi|383860275|ref|XP_003705616.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Megachile rotundata]
Length = 262
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 105 RSFASFRYRWRSWLRQYGSS-----EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
+ + R WR ++ + S ++ + N VF+ W I + N + S
Sbjct: 30 KQWGIHRTGWRGAMQDWWDSLSEGEKIFVPICFLNILVFLSWHIPAFRTTMNQYFCS-SP 88
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVF 218
S L+ S FSH + H+++NM L+ F +TLG E + LY+ +G + G
Sbjct: 89 ASSALCWPLLLSTFSHYSLLHLMANMYVLHNFSTYAVKTLGKEQFVLLYLVSGVLSGFTS 148
Query: 219 YLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
+L LAM + P+LGASGAV I+ +P L FF P+
Sbjct: 149 HLYK---LAMGFQ-----------NPSLGASGAVMGIIGYSCIASPDIYLSIIFF-PMLK 193
Query: 279 FLLGV---FLIGKDMLRIIEGNSNISGSAHLGGA 309
F ++G D++ + +AHLGGA
Sbjct: 194 FKASTAIKVILGVDVMGCLLRWQRFDHAAHLGGA 227
>gi|313679035|ref|YP_004056774.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151750|gb|ADR35601.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 218
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 40/212 (18%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS--------GRLHTLITSAFSHID 177
VV L+ N AVF++ +A P A I F+ G + L+TS F H
Sbjct: 16 VVKALVALNAAVFLVELLASPA--AREAMIYTYGFVPRLFWADPLGEGYRLVTSQFLHGG 73
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
HI+ N+ L+ FG ++ L G F + Y A+++ QG V
Sbjct: 74 FSHILGNLWFLWVFGDNVEDRL--------------GRFRFLIFYLLGGALAALAQG--V 117
Query: 238 VDPSRT-PALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAFLLGVFLIGK 288
DP T P +GASG+++A++ L P+A L F++P AF LG + + +
Sbjct: 118 FDPGSTSPMIGASGSISAVLGAYFVLFPRAQILTLVWIILPLTFYLPA-AFYLGYWALLQ 176
Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIR 320
++ G SN++ AHLGG WA +R
Sbjct: 177 FFYALL-GGSNVAFWAHLGG---FVWGWAALR 204
>gi|56697844|ref|YP_168215.1| rhomboid family protein [Ruegeria pomeroyi DSS-3]
gi|56679581|gb|AAV96247.1| rhomboid family protein [Ruegeria pomeroyi DSS-3]
Length = 247
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 37/220 (16%)
Query: 126 VVYGLIIANTAVFM--LWRIADPKFMAN---NFTISLDNFLSGR-LHTLITSAFSHIDVE 179
VVY L+ AN A+F+ L + DP+ + ++ I G TL+TS F H
Sbjct: 16 VVYLLLAANIAIFLATLGIMDDPRLIGRFYYDYAIIPARISDGDGWQTLVTSIFLHGGWM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G Y+A IG + ++ +S
Sbjct: 76 HLGGNMLFLWIFGDNLEDEMGHLGFALFYLAAGIGAGLIHV-------LSGPG------- 121
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKAT--------LYFDFFIPVPAFLLGVFLIGKDML 291
S P +GASGA+ +M + L P+A +YF F +PAF++ +G L
Sbjct: 122 -SMVPTIGASGAIAGVMGGYLLLFPRARVDILLILFVYFRIFT-IPAFVMLGAWLGFQFL 179
Query: 292 RIIEGNSNISGS---AHLGGAAVAAL----AWARIRRRGF 324
+ + G AH GG AV + W + RGF
Sbjct: 180 GGFSSDPDTGGVAYWAHTGGFAVGLVLTLPLWLKRGGRGF 219
>gi|380692746|ref|ZP_09857605.1| rhomboid family protein [Bacteroides faecis MAJ27]
Length = 224
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 35/204 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------TLITSAFSHIDVE 179
LII N VF +A + I L N+L LH LIT F H
Sbjct: 8 LIIINVLVFF------GTLVAQRYGIDLTNYLG--LHFFLASDFNPAQLITYMFMHGGFS 59
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF--------YLVYHAFLAMSSK 231
HI NM ++ FG + RT GP+ L Y+ IG + Y+V ++ +
Sbjct: 60 HIFFNMFAVFMFGTVLERTWGPKRFLFYYIVCGIGAGLIQEGVQYIKYVVDYSHYSQVDI 119
Query: 232 RQGMWVVDP--SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
G+ + + +GASGAV AI+L L P L F F +P P F+IG
Sbjct: 120 GTGIIPMGDFLNMLTTVGASGAVYAILLAFGMLFPNNQL-FIFPLPFPI-KAKYFVIGYA 177
Query: 290 MLRIIEGNSNISGS-----AHLGG 308
++ + G +N G AHLGG
Sbjct: 178 LIELYAGFANNPGDNVAHFAHLGG 201
>gi|320100850|ref|YP_004176442.1| rhomboid family protein [Desulfurococcus mucosus DSM 2162]
gi|319753202|gb|ADV64960.1| Rhomboid family protein [Desulfurococcus mucosus DSM 2162]
Length = 447
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--------LIT 170
R GSS+ ++ AN V++ + + N +I F+ L T + T
Sbjct: 10 RGMGSSKATTLIVAANIVVYLYTSYRNMFLESTNESIYALGFIPALLFTDPLQGVVRIFT 69
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
+ F+H D HI NM L+ FG I +G L LY A + +F++ A + +
Sbjct: 70 AMFTHADFFHIFFNMYFLWLFGRRIESVIGSRRYLLLYFASGLAAVLFHV---AIIPVGG 126
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-YFDFFIPVPAFL---LGVFLI 286
D PA+GASGA++ ++ + L P A L + FF+ +P VFLI
Sbjct: 127 Y-------DSLVVPAVGASGAISGVLGAYLLLFPYARLMWCMFFLFLPYCFPVSTAVFLI 179
Query: 287 GKDMLRIIEGNSNISGS---AHLGGAAVAALAWARIRRRG 323
+++ G + G AH+GG VA LA + RG
Sbjct: 180 IWFAEQVLYGYMRLGGVAYFAHVGG-FVAGLALTYVLTRG 218
>gi|448337010|ref|ZP_21526095.1| rhomboid family protein [Natrinema pallidum DSM 3751]
gi|445627005|gb|ELY80337.1| rhomboid family protein [Natrinema pallidum DSM 3751]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 167 TLITSAFSHIDVE-------HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
T +TS F+H HIV N I ++FFG + R +G S+ +
Sbjct: 133 TWVTSVFAHSPFLLPGGSFFHIVGNSIVIFFFGPLVERYVGSRNF-----------SILF 181
Query: 220 LVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
+V +S + G+ VV + T LGASGA AIM + LNP +Y F +PVP +
Sbjct: 182 IVSGVLAGLS--QVGISVVQGNPTAVLGASGAALAIMGVLTILNPGLKVYLYFILPVPIW 239
Query: 280 LL 281
LL
Sbjct: 240 LL 241
>gi|386716797|ref|YP_006183123.1| hypothetical protein SMD_0352 [Stenotrophomonas maltophilia D457]
gi|384076359|emb|CCH10940.1| hypothetical protein SMD_0352 [Stenotrophomonas maltophilia D457]
Length = 230
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTRPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|420236439|ref|ZP_14740922.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
gi|391880266|gb|EIT88760.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
Length = 266
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 39/213 (18%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN---------FTISLDNFLSGRLHT 167
WL ++ + +I+ VF W IA+ + N F + D L+ T
Sbjct: 35 WLYEWRNGGTNMTVILIALCVF-FWLIAEILYFTNRPALAVYESAFVLRSDQSLA-HPWT 92
Query: 168 LITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
L+T F H ID+ HI NM+ LY G+S+ + LG L LY+ +G SV +L
Sbjct: 93 LLTVLFMHSIDISHIFFNMVSLYLAGLSLEKMLGHWEFLALYLVSGLGASVAFL------ 146
Query: 227 AMSSKRQGMWVVDPSRTPA--LGASGAVNAI---MLLDIFLNPKATLYFDFFIPVPAFLL 281
+S+ G PS A +GASGA+ + M++ +P + + L
Sbjct: 147 -LSALASG-----PSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAWSMVV-----FL 195
Query: 282 GVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
G+ L+ + S ++ AHLGG AV AL
Sbjct: 196 GLILVVPMLF-----GSGVAWQAHLGGFAVGAL 223
>gi|24212820|ref|NP_710301.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|45656018|ref|YP_000104.1| hypothetical protein LIC10107 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386072593|ref|YP_005986910.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|417768025|ref|ZP_12415960.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417770113|ref|ZP_12418023.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417774575|ref|ZP_12422439.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|417784897|ref|ZP_12432602.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|418669895|ref|ZP_13231269.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418680821|ref|ZP_13242059.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418689273|ref|ZP_13250395.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418698349|ref|ZP_13259326.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418705070|ref|ZP_13265935.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418707622|ref|ZP_13268442.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418713056|ref|ZP_13273783.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|418726914|ref|ZP_13285513.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|418730897|ref|ZP_13289373.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|421087379|ref|ZP_15548215.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421104653|ref|ZP_15565248.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117297|ref|ZP_15577660.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421123313|ref|ZP_15583595.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|421124526|ref|ZP_15584783.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133686|ref|ZP_15593832.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|24193473|gb|AAN47319.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|45599251|gb|AAS68741.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353456382|gb|AER00927.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|400327471|gb|EJO79722.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400349470|gb|EJP01763.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400361418|gb|EJP17384.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|409947667|gb|EKN97661.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409951686|gb|EKO06200.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409959661|gb|EKO23427.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410011008|gb|EKO69136.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410022131|gb|EKO88910.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410344057|gb|EKO95252.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410366105|gb|EKP21498.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410429628|gb|EKP74003.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|410437657|gb|EKP86756.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410575417|gb|EKQ38435.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410754185|gb|EKR15840.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410762492|gb|EKR28653.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410764921|gb|EKR35623.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410772043|gb|EKR47237.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410774459|gb|EKR54467.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|410790139|gb|EKR83833.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455670215|gb|EMF35242.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 222
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLA 227
I + F H ++ H+ NM L+F G ++ G +LL +MA I
Sbjct: 52 IGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALISS-----------L 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ S +G+ + DP TP +GASGA++ I + L+P + + IP P FL+ ++
Sbjct: 101 LDSFIRGVILHDP--TPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVY 158
Query: 288 KDMLRIIEGNSNISGSAHLGG 308
D+ + ++ AHLGG
Sbjct: 159 SDITNVFT-EDGVARWAHLGG 178
>gi|227536413|ref|ZP_03966462.1| transmembrane rhomboid family protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227243789|gb|EEI93804.1| transmembrane rhomboid family protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 225
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--- 220
++ +IT F H HI NM L FG I + LG + L Y+ +G V
Sbjct: 44 KVWQIITYMFMHGGFSHIFFNMFSLLMFGPMIEQVLGSKRFLNFYLFTGLGALVLQYGIQ 103
Query: 221 ---VYHAFLAMSSKRQGM-----------WVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
+Y RQG+ ++ + + TP +GASGA+ I+L +L P
Sbjct: 104 AIELYQLVGTSFPARQGIDMNALSFEQIAFIKEINYTPLVGASGAIYGILLAFAYLFPNI 163
Query: 267 TLYFDFFIPVP---AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
L FIP+P + +G ++ + L + +I+ AH+GGA A
Sbjct: 164 PLQL-IFIPIPIKAKYFIGGLIVIEIYLSLSRPGDSIAHLAHVGGALFA 211
>gi|196228586|ref|ZP_03127452.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
gi|196226867|gb|EDY21371.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
Length = 223
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 130 LIIANTAVFMLWRI----ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
LI+AN AVF W++ D MA L S + + TS F H H++ NM
Sbjct: 20 LILANVAVFAGWQLRVGLEDSVAMAGFLPEELTTKSSTTWYYVFTSMFMHGGWMHLIGNM 79
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-SRTP 244
L+ FG ++ G L Y+ + ++ + + VDP S+ P
Sbjct: 80 WFLWIFGRNVEDNCGAIRYLLFYLLCGVAATLSFTI----------------VDPHSKIP 123
Query: 245 ALGASGAVNAIMLLDIFLNPKATLY-------FDFFIPVPAFLLGVFLIGKDMLRIIEGN 297
+GASGA++ I+ + +P+A + F + +PA++ + IG + I +
Sbjct: 124 LVGASGAISGILGAYLLHHPRARVLTLVPLGPFIRLMEIPAWMFFLVWIGLQIASQILAS 183
Query: 298 -------SNISGSAHLGG 308
S ++ +AH+GG
Sbjct: 184 HTHGVQTSGVAYAAHIGG 201
>gi|294786262|ref|ZP_06751516.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315225796|ref|ZP_07867584.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|294485095|gb|EFG32729.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315119928|gb|EFT83060.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 266
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 167 TLITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TL+T F H ID+ HI NM+ LY G+S+ R LG L LY+ +G SV +L
Sbjct: 92 TLLTVLFMHSIDISHIFFNMVSLYLAGLSLERMLGHWEFLALYLVSGLGASVAFL----- 146
Query: 226 LAMSSKRQGMWVVDPSRTPA--LGASGAVNAI---MLLDIFLNPKATLYFDFFIPVPAFL 280
+S+ G PS A +GASGA+ + M++ +P + +
Sbjct: 147 --LSALASG-----PSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAWSMVV-----F 194
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
LG+ L+ + S ++ AHLGG AV AL
Sbjct: 195 LGLILVVPMLF-----GSGVAWQAHLGGFAVGAL 223
>gi|297616495|ref|YP_003701654.1| rhomboid family protein [Syntrophothermus lipocalidus DSM 12680]
gi|297144332|gb|ADI01089.1| Rhomboid family protein [Syntrophothermus lipocalidus DSM 12680]
Length = 213
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-GAIGGSVFYLVYH 223
L + IT F H HI+ NM L+ FG ++ +GP + Y+A G I G+ +Y
Sbjct: 55 LSSFITCTFLHGSWMHIIGNMWALFLFGNNVEDKMGPVRFILFYLACGVIAGATHCYIY- 113
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA-------TLYFDFFIPV 276
S P +GASGA+ +M + PKA +F + + +
Sbjct: 114 ---------------PQSTVPTVGASGALAGVMGAYFLMFPKARVLTLIPVFFFFYLVEI 158
Query: 277 PAFL-LGVFLI-----GKDMLRIIEGNSNISGSAHLGG 308
PA + LG + G L EG + I+ AH+GG
Sbjct: 159 PAVVYLGFWAFTQLASGTIALFAPEGAAQIAFWAHVGG 196
>gi|389693570|ref|ZP_10181664.1| putative membrane protein [Microvirga sp. WSM3557]
gi|388586956|gb|EIM27249.1| putative membrane protein [Microvirga sp. WSM3557]
Length = 235
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL T+ F H + H++ NM+ L+ FG ++ +G + ++ I S + HAF+
Sbjct: 73 TLATNIFLHGSLFHLIGNMLFLWVFGDNVEDAMGHVRFVVFFLLCGIAAS----LAHAFI 128
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
R P +GASG V+ ++ + L P+ ++ F +P L + I
Sbjct: 129 TTEPHR-----------PLIGASGGVSGVVAAYLILYPRVKIWGLFLKGIPLHLPAYWTI 177
Query: 287 G-----KDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
G + + G+ ++ AHLGG V AL +RRR
Sbjct: 178 GLWFALQLASAFLGGDESVGWFAHLGGFLVGALLIPLMRRR 218
>gi|319787457|ref|YP_004146932.1| rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465969|gb|ADV27701.1| Rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 226
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 25/196 (12%)
Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNF--TISLDNFL---SGRLHTLITSAFSHIDV 178
V L+IAN AVF+L + D F A + D F S + L++ F H +
Sbjct: 8 PVTKALLIANVAVFLLQLVLGDTTFSAFMLWPPLGFDPFWPAQSFQPWQLLSYGFLHGSL 67
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ NM+ LY FG + T GP L ++LV A + G W V
Sbjct: 68 GHLFFNMLALYMFGAPLESTWGPRRFLT-----------YWLVTVAGAGLCQLLVGWWAV 116
Query: 239 DPSRT--PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP----AFLLGVFLIGKDMLR 292
P +GASG V ++L L P + F P+P F++ VF + + +L
Sbjct: 117 SSGSPPYPTIGASGGVFGLLLAYGMLFPNQRVML-LFPPIPMKARTFVI-VFGVAELVLG 174
Query: 293 IIEGNSNISGSAHLGG 308
+ ++ AHLGG
Sbjct: 175 MTGWQPGVAHFAHLGG 190
>gi|298674393|ref|YP_003726143.1| rhomboid family protein [Methanohalobium evestigatum Z-7303]
gi|298287381|gb|ADI73347.1| Rhomboid family protein [Methanohalobium evestigatum Z-7303]
Length = 299
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T F H + H+ NM L+FFG + G + L ++ I S+
Sbjct: 144 TIVTHIFVHSNFAHLFLNMFVLFFFGNEFEKRFGKQRFLTVFFLAGIIASI--------- 194
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
G ++ + P +GASGAV I L P + F FFIP+ + LI
Sbjct: 195 -------GFALITTTPFPLVGASGAVIGIFASLAILVPDLPI-FVFFIPMRIKHAILLLI 246
Query: 287 GKDML-RIIEGNSNISGSAHLGGAAVAALAWARIRR 321
G + L II I+ SAHL G AV L I++
Sbjct: 247 GIEFLFFIINTQDMIAHSAHLMGMAVGILMGFWIKK 282
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ITS F H D H+ NM L+FFG + R LG L ++ A I G++ YLVY AFL
Sbjct: 75 IITSIFVHADFWHLFINMFVLFFFGNELERRLGERKYLIIFFASGIAGNLAYLVY-AFLT 133
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL---LGVF 284
+P PA+GAS A+ +M + P+ + F +P+P + + +F
Sbjct: 134 -----------NPF-IPAMGASAAIFGVMGALAIIAPEIRVVI-FPLPIPVSIKVAILLF 180
Query: 285 LIGKDMLRIIEGNSNISGSAHLGGAAVA 312
I +L ++ ++ AHL G V
Sbjct: 181 AIYDLLLLPFSYSTGVAHIAHLAGLLVG 208
>gi|374600022|ref|ZP_09673024.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|423325185|ref|ZP_17303026.1| hypothetical protein HMPREF9716_02383 [Myroides odoratimimus CIP
103059]
gi|373911492|gb|EHQ43341.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|404607194|gb|EKB06728.1| hypothetical protein HMPREF9716_02383 [Myroides odoratimimus CIP
103059]
Length = 274
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GR T I+ +F H + H++ NMI L+F L +Y+ GA+GGS+ Y +
Sbjct: 60 GRFWTFISYSFVHATIWHLLLNMIMLFFVSNLFFTFFTTRQFLFVYLPGALGGSILYYIS 119
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F AM S +GAS AV A ++ P+ + + +
Sbjct: 120 ALFFAMGS-------------GLVGASAAVMAPLIAVASFAPQMEVRLALLGRIKMIYIA 166
Query: 283 VFLIGKDMLRIIEGNSNISGS-AHLGGAAVA 312
F+I D+ ++ +SN+ G AHLGGA V
Sbjct: 167 GFIILIDLFQL--SSSNVGGHLAHLGGALVG 195
>gi|374316397|ref|YP_005062825.1| hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
gi|359352041|gb|AEV29815.1| putative membrane protein [Sphaerochaeta pleomorpha str. Grapes]
Length = 213
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHID 177
R + + LII N VF+L P+ + + + +F L G + T F H
Sbjct: 13 RNNTYTNITLKLIIINAVVFLLTTYIAPR--SAYYLAMIPSFVLHGYIWQFFTYMFVHGG 70
Query: 178 VEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
HI NM+ L+ FG + + +G E+LL + G + G + +L Y A
Sbjct: 71 FSHIFFNMLSLFIFGTMVEQRVGSKEFLLFYLLTGIVSGIISFLCYLA------------ 118
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDM-LRIIE 295
+ +GASGA+ ++L+ P A ++ IP+ A +L V ++ ++
Sbjct: 119 --AGTNVILVGASGAIYGVLLMFAVFYPYARVFVFGLIPIRAPVLVVLYAFIELSSQVFG 176
Query: 296 GNSNISGSAHLGGAAVAALAWARIRRR 322
N++ HL G A L + RIR +
Sbjct: 177 AGGNVAHLTHLSGLLFAYL-YCRIRMK 202
>gi|373461836|ref|ZP_09553572.1| hypothetical protein HMPREF9944_01836 [Prevotella maculosa OT 289]
gi|371950954|gb|EHO68805.1| hypothetical protein HMPREF9944_01836 [Prevotella maculosa OT 289]
Length = 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RL+ L+T F H +EHI NM L+ FGM + GP+ L Y+A IG +F
Sbjct: 53 RLYQLVTYMFMHASLEHIFFNMFALWMFGMVVENVWGPKKFLFYYIACGIGAGLFQEAAQ 112
Query: 224 ---AFLAMSSKRQGMWVVDPSRTP-----------ALGASGAVNAIMLLDIFLNPKATLY 269
+L ++S+ + + +GASGAV AI+L P L+
Sbjct: 113 FCSFYLTVASQYPSLSLAQLPEVARHLGDALNSWTTVGASGAVYAILLAFGMTFPNERLF 172
Query: 270 F---------DFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
+F+ + A G+ L + N N++ AHLGG V
Sbjct: 173 IIPIPIPIKAKWFVMIYA---GIELFSA----MSTTNDNVAHLAHLGGMVVG 217
>gi|114763968|ref|ZP_01443209.1| rhomboid family protein [Pelagibaca bermudensis HTCC2601]
gi|114543560|gb|EAU46574.1| rhomboid family protein [Roseovarius sp. HTCC2601]
Length = 247
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 45/225 (20%)
Query: 123 SSEVVYGLIIANTAVFM-LWRIADPKFMANNFTISLDNFLSGRLHT-------LITSAFS 174
+ V YGLI+AN +F+ W + N F I D L L T L+TS F
Sbjct: 13 TPYVTYGLIVANIVIFISYWGLFQNPRALNAFFI--DWALIPALVTEGYGFSGLLTSMFL 70
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H + H+ NM+ L+ FG +I LG L Y+A G + LV++ +S
Sbjct: 71 HGGLTHLAGNMLFLFIFGDNIEDALGHVKYLGFYLA---SGLIAALVHYVSAPLSP---- 123
Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKA------TLYFDF-FIPVPAF-LLGVFLI 286
P +GASGA+ +M + + PKA L F IPVPA+ +L V+
Sbjct: 124 --------IPTVGASGAIAGVMGAYLLMFPKARVDILVILIVIFKIIPVPAWIMLAVWF- 174
Query: 287 GKDMLRIIEG------NSNISGSAHLGG--AAVAALAWARIRRRG 323
L++ G S ++ AHLGG A +A +A +RR G
Sbjct: 175 ---SLQLFGGFGPAGDGSGVAYWAHLGGFVAGMALIAPTWLRRGG 216
>gi|110636442|ref|YP_676649.1| rhomboid family membrane protein [Cytophaga hutchinsonii ATCC
33406]
gi|110279123|gb|ABG57309.1| rhomboid family membrane protein [Cytophaga hutchinsonii ATCC
33406]
Length = 264
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 58/240 (24%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVSNMIGL 188
L+I N +F L I D + ++ I + G + ++T+ F H D H+ NM+GL
Sbjct: 11 LLIINVVLFALSYIFDNQLHLYHYLILHGVYAEGFAAYQIVTNIFMHADFRHLFGNMLGL 70
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF----------------------- 225
YFFG + LG + L LY +G + Y +A+
Sbjct: 71 YFFGPLLEHFLGFKKFLILYFVCGVGAGLLYWGINAYQVRLVREDAIAFLNSPNPDSFNQ 130
Query: 226 ----------------------------LAMSSKRQGMWVV-DPSRTPALGASGAVNAIM 256
L +K Q + VV D + LGASGA+ I+
Sbjct: 131 FVDKHNSHEYNNQLNLIDAYAEHPEDPELQQQTKHQVVQVVYDVTNFGLLGASGAIFGIL 190
Query: 257 LLDIFLNPKATLYFDFFIPVP---AFLLGVF-LIGKDMLRIIEGNSNISGSAHLGGAAVA 312
+ L P L F+PVP +L+GV+ I L N N++ H+ G A
Sbjct: 191 MAFALLFPNTELML-LFLPVPIKAKYLVGVYAAIEIYSLYANRPNDNVAHFVHIAGMIFA 249
>gi|427731898|ref|YP_007078135.1| hypothetical protein Nos7524_4800 [Nostoc sp. PCC 7524]
gi|427367817|gb|AFY50538.1| putative membrane protein [Nostoc sp. PCC 7524]
Length = 223
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 128 YGLIIANTAVFM---LWRIADPKFMANNFTI---SLDNFLSGRLHTLITSAFSHIDVEHI 181
YGLI N VF+ A N + + L S TL TS F H H+
Sbjct: 18 YGLIGMNVLVFLHELSLSTAQLNQFFNQYAVIPQELTTNFSSEWTTLFTSQFLHGGWWHL 77
Query: 182 VSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
+SNM+ L+ FG +I LG +YLL FYL A A+ GM
Sbjct: 78 ISNMVFLWVFGNNIEERLGHLKYLL------------FYLGCGALAALCQWFIGM----S 121
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFF---IPVPAF-LLGVFLIGKDMLR 292
S P+LGASGA++ ++ I P A ++ FF I +PA L+G+F +
Sbjct: 122 STIPSLGASGAISGVLGAYIIRFPHARVTTLVFLGFFVTTINIPALVLIGIFFLQN---- 177
Query: 293 IIEGNSNISGSAHLGGAAVAALAWARI 319
+I G +++ +A++ WA I
Sbjct: 178 VISGLASLQAAANMSVETGGVAYWAHI 204
>gi|325972771|ref|YP_004248962.1| peptidase S54, rhomboid domain [Sphaerochaeta globus str. Buddy]
gi|324028009|gb|ADY14768.1| Peptidase S54, rhomboid domain [Sphaerochaeta globus str. Buddy]
Length = 212
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 20/196 (10%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHIDVEHIVSNMIGL 188
L++ N V++L P+ + + + +F L G + T F H H++ NM+ L
Sbjct: 23 LVVLNALVYLLTAYIYPR--SAYYLAMIPSFVLGGYVWQPFTYMFVHGGFNHLLFNMLSL 80
Query: 189 YFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
+ FG + + +G E+LL +AG G V ++ Y+ + + +G
Sbjct: 81 FIFGSMVEKRIGSKEFLLFYLLAGLFSGIVSFISYY--------------LAGTNVILVG 126
Query: 248 ASGAVNAIMLLDIFLNPKATLYFDFFIPVPA-FLLGVFLIGKDMLRIIEGNSNISGSAHL 306
ASGA+ A++L+ P + ++ FIPV A L+ ++ I + ++ N++ HL
Sbjct: 127 ASGAIYAVLLMFAVFYPYSVIFVFGFIPVRAPILVILYAIIELSSQVFGRGGNVAHLTHL 186
Query: 307 GGAAVAALAWARIRRR 322
G A L + RIR R
Sbjct: 187 SGLVFAYL-YCRIRMR 201
>gi|156095542|ref|XP_001613806.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802680|gb|EDL44079.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 416
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
+FM +F + RL+TL+T+ SH + ++ N I L++ G S +
Sbjct: 238 EFMYTHFCCGVQQLRERRLYTLVTNLISHNTGQSLLLNTISLFYIGRSFEMAINSRNFFL 297
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP-SRTP-----ALGASGAVNAIMLLDI 260
Y I S + YH + G + + P S +P LGASG++++I+
Sbjct: 298 TYFLSGIISSYVQICYH--------KGGRFFLSPTSSSPYGNVCVLGASGSISSILATYT 349
Query: 261 FLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-AHLGGAAVAALAW 316
+ P++++Y + +P L ++ ++ + +G AHL G + L +
Sbjct: 350 LMFPRSSIYLYGVLALPLALFTSLYGANEVYCVLTDKKDNTGHVAHLTGMFLGILYY 406
>gi|346474066|gb|AEO36877.1| hypothetical protein [Amblyomma maculatum]
Length = 310
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 97/245 (39%), Gaps = 49/245 (20%)
Query: 89 SFFDGKVL-FFRAQFPERSFASFRYRWRS------------WLRQYGSSEVVYGLIIANT 135
SF V + R + RS S R+ W W S V Y LI N
Sbjct: 54 SFLGAAVWQYERMRREARSIVSQRWTWEPKRGRFRQQVHTWWQSVPEGSRVAYVLIATNV 113
Query: 136 AVFMLWRIA--DPKFMANNFT-------ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
AV +LWR+ +P FM F+ + L FLS FSH H+ +NM+
Sbjct: 114 AVCLLWRVPRLEP-FMVRYFSSHPASKSVCLPMFLS---------TFSHHSFLHLAANMV 163
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
L F + LG E + +Y++ + S+ ++L + R+G +L
Sbjct: 164 VLNSFAPTAVAILGREQFVAMYLSAGVISSL-----ASYLHKVAMRRG--------AMSL 210
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK---DMLRIIEGNSNISGS 303
GASGA+ A++ P A L F+P F L G D ++ + +
Sbjct: 211 GASGAILAVVATLCVQYPDAQLSI-IFLPFLTFSAAAALKGVLIFDAAGVLLRWRLLDHA 269
Query: 304 AHLGG 308
AHLGG
Sbjct: 270 AHLGG 274
>gi|325285172|ref|YP_004260962.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324320626|gb|ADY28091.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 247
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 90/223 (40%), Gaps = 38/223 (17%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++V+ LII N F+ + + M F++ + +L L++ F H HI
Sbjct: 5 TDVIKHLIIINVIFFLATQTLGDQ-MYQWFSLWFPENENFQLWQLVSHMFMHGGFMHIAF 63
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL----------AMSSKRQ 233
NM LY FG + + G L Y + IG ++ + + F + SK Q
Sbjct: 64 NMYALYAFGTPLEQMWGKNKFLFFYFSAGIGAALIHTGVNYFYFNQGLDAIVNSGVSKEQ 123
Query: 234 GMWVVDPSR----------------------TPALGASGAVNAIMLLDIFLNPKATLYFD 271
M +V + TPA+GASGA+ I++ + P A L
Sbjct: 124 VMGIVAEGKYMPDWYNVASKSTIDNFLSAYNTPAVGASGAIYGILVAFGMMFPNAELMMI 183
Query: 272 FF-IPVPAFLLGVFLIGKDMLRIIEGNSNISGS----AHLGGA 309
F IP+ A LIG D+ + G S G AH+GGA
Sbjct: 184 FLPIPIKAKYFIPVLIGIDLFSGLTGYSLFGGGIAHFAHIGGA 226
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N +F L ++A P + + G L+ L+TSAF H V HI NM
Sbjct: 80 VTYALIGLNLLMFAL-QMASPD-LDRALGLWPPAAADGELYRLLTSAFLHFSVTHIAFNM 137
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S
Sbjct: 138 LALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNALTAGAS 184
>gi|285019203|ref|YP_003376914.1| hypothetical protein XALc_2443 [Xanthomonas albilineans GPE PC73]
gi|283474421|emb|CBA16922.1| hypothetical uncharacterized membrane protein [Xanthomonas
albilineans GPE PC73]
Length = 218
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 81/198 (40%), Gaps = 38/198 (19%)
Query: 133 ANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
A A FMLW I DP NF I L+T AF H H++ NM+ LY
Sbjct: 29 ATFAPFMLWPIGSFDPFSSGQNFQI----------WQLLTYAFLHGGFSHLLFNMLALYM 78
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV--DPSRTPALGA 248
FG + +T G + L +YLV A + G W++ + P LGA
Sbjct: 79 FGGPLEQTWGNKRFLT-----------YYLVCVAGAGLCQLLVGWWMLRNGSAPYPTLGA 127
Query: 249 SGAVNAIMLL--DIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG----NSNISG 302
SG + ++L +F N + L F P+P F+I L ++ G ++
Sbjct: 128 SGGIFGLLLAFGMLFPNQRVMLLFP---PIP-MTARTFVIVFGALELVMGFAGWEPGVAH 183
Query: 303 SAHLGGAAVAALAWARIR 320
AHLGG W IR
Sbjct: 184 FAHLGG---MLFGWLMIR 198
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AF H + HI+ NM+ LY+ G +I LG L LY+ A+GGS F LV+
Sbjct: 53 TVLTGAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWC--- 109
Query: 227 AMSSKRQGMWVVDPSR--TPALGASGAV----NAIMLLDIFLNPKATLYFDFFIPVPAFL 280
++ PS +GASGAV A+ +L T L
Sbjct: 110 ----------LIQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTAILT--------L 151
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
LG+ L+ M+ S IS H+GGA A
Sbjct: 152 LGINLVYGFMV------SGISWQGHIGGAIAGVCA 180
>gi|307190111|gb|EFN74267.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Camponotus floridanus]
Length = 281
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 24/213 (11%)
Query: 105 RSFASFRYRWR----SWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDN 159
R F R WR +W R + ++ + N F+ WR+ P F N
Sbjct: 50 RQFRINRTGWRGEIETWWRNLTEGQKMFVPICFINVVTFLAWRV--PAFQKTMVRYFCAN 107
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
+ ++ S FSH + H+ +NM L+ F TLG E L LY++ + S
Sbjct: 108 PANATCWPMLLSTFSHYSIFHLAANMYVLHSFSTIAVTTLGKEQFLALYLSSGVIAS--- 164
Query: 220 LVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAF 279
HA+ M G+ +LGASGA+ ++ P L F+P+ F
Sbjct: 165 FASHAYKIMFGV-PGL---------SLGASGAIMGVLGFICTQYPDIRLSI-IFLPMFTF 213
Query: 280 LLGVFLIG---KDMLRIIEGNSNISGSAHLGGA 309
G+ + G D++ G +AHLGGA
Sbjct: 214 TAGMAIKGIMAMDVVGCTLGWKYFDHAAHLGGA 246
>gi|417762993|ref|ZP_12410976.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|418673977|ref|ZP_13235287.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409941049|gb|EKN86683.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410578960|gb|EKQ46811.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 204
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAFLA 227
I + F H ++ H+ NM L+F G ++ G +LL +MA I
Sbjct: 34 IGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALISS-----------L 82
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ S +G+ + DP TP +GASGA++ I + L+P + + IP P FL+ ++
Sbjct: 83 LDSFIRGVILHDP--TPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVY 140
Query: 288 KDMLRIIEGNSNISGSAHLGG 308
D+ + ++ AHLGG
Sbjct: 141 SDITNVFT-EDGVARWAHLGG 160
>gi|260795845|ref|XP_002592915.1| hypothetical protein BRAFLDRAFT_201921 [Branchiostoma floridae]
gi|229278139|gb|EEN48926.1| hypothetical protein BRAFLDRAFT_201921 [Branchiostoma floridae]
Length = 333
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 82/207 (39%), Gaps = 27/207 (13%)
Query: 113 RWRS-----WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH- 166
+WR W +VV +I N V+ LWRI P+ N S +
Sbjct: 106 QWRREINKFWQNLTEGQKVVSVIIGLNGLVYALWRI--PQCGPTMLKYFTSNIASTAICL 163
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF 225
++ S FSH H NM L+ F S LG E Y+ AG + Y F
Sbjct: 164 PMVLSTFSHYSFLHYAVNMYVLWSFSTSAVAILGKEQFTAFYLTAGVLSNLASYAAKVGF 223
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV-- 283
+R G P+LGASGA+ ++ L P+A L FF P F G
Sbjct: 224 -----QRFG---------PSLGASGAIMGVLGLVCTQVPEAQLAIVFF-PFVTFTAGSAI 268
Query: 284 -FLIGKDMLRIIEGNSNISGSAHLGGA 309
++G D ++ G +AHLGGA
Sbjct: 269 KVIMGLDAAGVLLGWRFFDHAAHLGGA 295
>gi|189465270|ref|ZP_03014055.1| hypothetical protein BACINT_01616 [Bacteroides intestinalis DSM
17393]
gi|189437544|gb|EDV06529.1| peptidase, S54 family [Bacteroides intestinalis DSM 17393]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 31/218 (14%)
Query: 130 LIIANTAVFMLWRIAD------PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
L+I N VF+ +A +++ +F ++ DNF + LIT F H H+
Sbjct: 11 LLIINVLVFLATIVAQSYGLDLARYLGLHFFLA-DNF---NIAQLITYMFMHGGFTHLFF 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVYHAFLAMSSKRQGMWVV 238
NM L+ FG + + GP+ L Y+ IG V Y+ Y L+ + + V
Sbjct: 67 NMFALWMFGRILEQVWGPKRFLFYYLVCGIGAGFIQEIVQYVHYEMVLSAYTSVNTGYSV 126
Query: 239 DP-----SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRI 293
P + +GASGA+ AI+L L P L F F +P P F+IG ++ +
Sbjct: 127 IPMGEYLNMMTTVGASGAIYAILLGFGMLFPNQPL-FIFPLPFP-IKAKYFVIGYALIEL 184
Query: 294 IEGNSNISGS-----AHLGGAA---VAALAWARIRRRG 323
G +N G AHLGG + + W R + RG
Sbjct: 185 YAGFANNPGDNVAHFAHLGGMIFGFILIMYW-RKKDRG 221
>gi|342319934|gb|EGU11879.1| Hypothetical Protein RTG_02124 [Rhodotorula glutinis ATCC 204091]
Length = 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
++WL + GLI V++ WR+ P+ + ++ D +SG+ T++TS FS
Sbjct: 119 QNWLEMSEAKRTAAGLIGVFGGVWLAWRL--PRRLGLGKWLAHDA-MSGKSVTMLTSTFS 175
Query: 175 HIDVEHIVSNMIGLYFFGM---------------SIGRTLGPEYLLKLYMAGAIGGSVFY 219
H + H+ N I L+ F S+ R+ L ++ G V
Sbjct: 176 HRTIPHLAFNSIALFSFTTAAFGTFNFSELMSTESLPRSTSRYEFLAFFV---TTGLVAS 232
Query: 220 LVYHAFLAMSSK----RQGMWVVDPSRT--PALGASGAVNAIMLLDIFLNPKATLYFDF- 272
L HA+ A QG+ +T P+LGASGAV AI+ L P ++ F
Sbjct: 233 LASHAWFARRVAGRLLAQGVPSAQVRQTVLPSLGASGAVYAIVSLSALSFPSTSVSLIFL 292
Query: 273 -FIPVPAFLLGVFLIGKDMLRIIEG 296
F P+P L L+ D++ +I G
Sbjct: 293 PFFPIPIGLATSALLIVDLVGLIRG 317
>gi|340521983|gb|EGR52216.1| predicted protein [Trichoderma reesei QM6a]
Length = 563
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR R+ +S G +IA N V++ WRI + N + I + + R TL
Sbjct: 332 RYRL---FREVSTSHATVGALIAINALVYLGWRIPPLWSLFNRYMIFV--VATVRPITLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+AFSH + H++ NM+ L+F G + +G L LY+ G++G GS+ +L
Sbjct: 387 TAAFSHTKLSHLLVNMVPLWFVGTCLHDEIGRADFLALYLGCGSVGFLGSLITYTLRGWL 446
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAV 252
++S LGASGA
Sbjct: 447 TVTS---------------LGASGAT 457
>gi|226290684|gb|EEH46168.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 581
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 362 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 419
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+NM+ L+F G R LG L LY++ + S+ L H S
Sbjct: 420 AANMLILWFVGT---RQLGRGDFLSLYLSSGVFASLTSLTVHVLQNKLS----------- 465
Query: 242 RTPALGASGAVNAIML--LDIFLNPKATLYF 270
+LGASGA+ ++ I N K T+ F
Sbjct: 466 -VTSLGASGAIAGLVAAWCIIHSNDKLTIAF 495
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS F H V HI NMI LY G + R LGP L +Y+ G +GGS A +A
Sbjct: 78 LLTSGFLHWSVVHIAMNMISLYLIGADLERVLGPVRYLAVYLIGLLGGS------AAVMA 131
Query: 228 MSSKRQGMWVVDPSRTPALGASGAV----NAIMLLDIFLNPKATLYFDFFI 274
+ S+ GASGAV A++++ I L AT +
Sbjct: 132 LGSE----------NVATAGASGAVYGLLGALLIVVIRLKLPATTLITVIV 172
>gi|414078562|ref|YP_006997880.1| rhomboid family protein [Anabaena sp. 90]
gi|413971978|gb|AFW96067.1| rhomboid family protein [Anabaena sp. 90]
Length = 219
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAF 225
TL TS F H H++SNM+ L+ FG +I LG +YLL FYL A
Sbjct: 63 TLFTSQFLHGGWWHLISNMVYLWVFGNNIEDRLGHFKYLL------------FYLTCGAI 110
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA----TLYFDFFIP---VPA 278
A+ GM+ S P+LGASGA++ ++ + P+A ++ FFI VPA
Sbjct: 111 AALCQWFIGMY----SAVPSLGASGAISGVLGAYLIWFPQARITTLIFLGFFITTINVPA 166
Query: 279 F-LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319
++G+F + +I G +++ +A++ WA +
Sbjct: 167 LVIIGIFFVQN----LISGFASLQAAANMSVEMGGVAYWAHL 204
>gi|399524860|ref|ZP_10765362.1| peptidase, S54 family [Atopobium sp. ICM58]
gi|398373815|gb|EJN51650.1| peptidase, S54 family [Atopobium sp. ICM58]
Length = 292
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 36/164 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AF H + HI+ NM+ LY+ G +I +G L LY+ A+GGS F + +
Sbjct: 114 TVLTGAFLHGGITHILFNMLSLYWVGRAIEPAMGRWRFLALYLVSALGGSAFIIAWC--- 170
Query: 227 AMSSKRQGMWVVDPSR--TPALGASGAV----NAIMLLDIFLNPKATLYFDFFIPVPAFL 280
++ PS +GASGAV A+ +L T+ L
Sbjct: 171 ----------LIQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTVILT--------L 212
Query: 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGA-AVAALAW--ARIRR 321
LG+ L+ M+ S IS H+GGA A A W AR+ R
Sbjct: 213 LGINLVYGFMV------SGISWQGHIGGAIAGVAATWVLARMAR 250
>gi|380692747|ref|ZP_09857606.1| rhomboid family protein [Bacteroides faecis MAJ27]
Length = 300
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 8/143 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L+T F H HI+ NM+ LY+FG ++L +Y+ G I G +FY+ +
Sbjct: 68 SLLTYMFMHAGFLHILFNMLWLYWFGSLFLYFFSGKHLRGVYVLGGICGGLFYMAAYNIF 127
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
S+ V P T +GAS +V AI+ + P + F V L + +I
Sbjct: 128 PYFSE------VLPHAT-LVGASASVLAIVAATAYREPNYRVQLFLFGAVRLKYLALIVI 180
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
G D+L I N+ AHLGGA
Sbjct: 181 GTDLLFITSNNAG-GHIAHLGGA 202
>gi|427388161|ref|ZP_18884044.1| hypothetical protein HMPREF9447_05077 [Bacteroides oleiciplenus YIT
12058]
gi|425724744|gb|EKU87618.1| hypothetical protein HMPREF9447_05077 [Bacteroides oleiciplenus YIT
12058]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
F+A+NF I+ LIT F H H+ NM L+ FG + + GP+ L
Sbjct: 41 FLADNFNIA----------QLITYMFMHGGFTHLFFNMFALWMFGRILEQVWGPKRFLFY 90
Query: 208 YMAGAIGGS-----VFYLVYHAFLAMSSKRQGMWVVDPSRT-----PALGASGAVNAIML 257
Y+ IG V Y+ Y L+ + V P + +GASGAV AI+L
Sbjct: 91 YLLCGIGAGFIQEIVQYIHYEMVLSAYDSVNTGYSVIPMKEYLNMMTTVGASGAVYAILL 150
Query: 258 LDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGS-----AHLGG 308
L P L F F +P P F+IG ++ + G +N G AHLGG
Sbjct: 151 GFGMLFPNQPL-FIFPLPFPI-KAKYFVIGYALIELYAGFANNPGDNVAHFAHLGG 204
>gi|322698483|gb|EFY90253.1| rhomboid family protein [Metarhizium acridum CQMa 102]
Length = 575
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR LR ++ G +IA N VF+ WR+ + N + I + + R TL
Sbjct: 332 RYRL---LRDVSTAHATVGTLIALNALVFLGWRVPPLWSLFNKYMIFV--VATVRPPTLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+ FSH + H++ NM+ L+F G ++ LG L LY+ GA G GS+ +L
Sbjct: 387 TAVFSHTRLSHMLVNMVPLWFIGTALHEELGRADFLTLYLGCGAAGFLGSLVTYTLRGWL 446
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAV 252
++S LGASGA
Sbjct: 447 TVTS---------------LGASGAT 457
>gi|170290174|ref|YP_001736990.1| rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174254|gb|ACB07307.1| Rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 452
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+TS F H D+ HI NM L+F G ++ LG + LY+ + S+F+ Y +
Sbjct: 67 LTSMFLHADIFHIFFNMYFLFFAGRAVEDALGSTRFIFLYLISGLAASIFHSAYSFIGGL 126
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL-------YFDFFIPVPAFLL 281
+S PA+GASGA++ ++ + P +L +F P+ A L
Sbjct: 127 TSY----------AIPAIGASGAISGVLGAYLLFYPGTSLVVCIPVFFFPLCFPMRASLY 176
Query: 282 GVFLIGKDMLRIIEGNSNISGS----AHLGG--AAVAALAWARIRRR 322
+F +++I G + I+G AH GG A +A L RRR
Sbjct: 177 ILFWFA---MQVIYGFARIAGGVAVFAHAGGFLAGIALLPILANRRR 220
>gi|354604586|ref|ZP_09022575.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
gi|353347165|gb|EHB91441.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
Length = 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 30/209 (14%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLD-------NFLSGRLHTLITSAFSH 175
+ VV LII N A+F L + P + + L NF RL+ LIT F H
Sbjct: 10 TPPVVKNLIIIN-ALFFLAEVILPNGLGDLLIDKLGLYPWQSPNF---RLYQLITHMFLH 65
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------------VYH 223
+ H+ NM L+ FG ++ +G + L YM IG + + H
Sbjct: 66 GGIAHLFMNMFALWMFGRTLEYDMGSKRFLIYYMITGIGAGLLQMGVSWIEISRLQAAAH 125
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
AM+ Q M + + +GASGAV ++L + P A + IP
Sbjct: 126 EMGAMTPYMQSM-IAARANVVTIGASGAVFGVLLAFGMMYPNAMIM--LLIPPIPIKAKY 182
Query: 284 FLIGKDMLRIIEG----NSNISGSAHLGG 308
F+IG +L + G S ++ AH+GG
Sbjct: 183 FVIGYGLLELSLGVTGAQSGVAHFAHVGG 211
>gi|351709631|gb|EHB12550.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Heterocephalus glaber]
Length = 378
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRI-A 144
+S+FDG K + + P++ R W + V G+I AN VF LWR+ A
Sbjct: 129 QSYFDGVKADWLDSIRPQKK-GDLRKEINKWWNNLSDGQRTVTGIITANVLVFCLWRVPA 187
Query: 145 DPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S+FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSSFSHFSLFHMAANMYVLWSFSSSIVSILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|254464363|ref|ZP_05077774.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium Y4I]
gi|206685271|gb|EDZ45753.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium Y4I]
Length = 256
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 35/205 (17%)
Query: 126 VVYGLIIANTAVFMLWRI--ADPKFMA---NNFTISLDNFLSGR-LHTLITSAFSHIDVE 179
VVY LI AN ++ + A P+ +A + + I + G TL TS F H +
Sbjct: 16 VVYALIAANVLAYIYYTASYASPRALAYFYDAYAIVPAEIIHGYGFETLFTSLFIHGGLM 75
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD 239
H+ NM+ L+ FG ++ +G L Y+ +G + ++ MS+
Sbjct: 76 HLGGNMLFLWIFGDNLEEEMGHLPFLLFYLLSGLGAGLIHV-------MSAPG------- 121
Query: 240 PSRTPALGASGAVNAIMLLDIFLNPKA--------TLYFDFFIPVPAF-LLGVFLIGKDM 290
S P +GASGA+ +M + + P+A +YF F +PAF +LGV+L
Sbjct: 122 -SMVPTVGASGAIAGVMGGYLLMFPRARVDILLILIVYFRIFT-IPAFVMLGVWL-AMQF 178
Query: 291 LRIIEGNSNISGS---AHLGGAAVA 312
L + + N G AH GG AV
Sbjct: 179 LGGLGSDPNQGGVAYWAHAGGFAVG 203
>gi|390444463|ref|ZP_10232240.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
gi|389664470|gb|EIM75962.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
Length = 265
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
GS VV ++ A+ L+ I P+F+ + I+ F H D H+
Sbjct: 18 GSFLVVSFILPELQAILALYYIQSPRFIPTQY---------------ISYMFMHADGWHL 62
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SNM+GL+ FG + ++LGP+ LL L+M +G + Y Y +F
Sbjct: 63 FSNMLGLFVFGPLLEQSLGPKRLLTLWMVCGVGSGLLYSGYTSF 106
>gi|313679165|ref|YP_004056904.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151880|gb|ADR35731.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 31/211 (14%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIA-DP---KFMANNFTISLDNFLS---GRLHTLIT 170
+R +G + V LI AN VF W+++ P ++ N + F + G + T
Sbjct: 8 IRHHGPALVTRLLIAANVLVF-FWQLSLGPEGFRWAVNAYGFVPKFFFADPAGEFGRIFT 66
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
S F H EHI+ NM L+ FG ++ LG L +Y+ IG + LV FL S+
Sbjct: 67 SMFLHGGFEHILGNMWFLWIFGPAVEARLGGGRYLLVYLLAGIGAA---LVEALFLPGST 123
Query: 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL---GVFLIG 287
P +GASGA++ ++ L P A + P+P F IG
Sbjct: 124 ------------VPMIGASGAISGVLGAYFLLFPTAWI-LTLIWPLPPIFFWFPAAFFIG 170
Query: 288 KDML-RIIEGNSNISGS---AHLGGAAVAAL 314
+L +++ G + G AH+GG V L
Sbjct: 171 YWVLIQVLYGALGLPGVAWWAHVGGFIVGYL 201
>gi|388256947|ref|ZP_10134127.1| integral membrane protein [Cellvibrio sp. BR]
gi|387939151|gb|EIK45702.1| integral membrane protein [Cellvibrio sp. BR]
Length = 461
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+ +T F H D+ H++ NM L G ++ +G L Y+ +G F
Sbjct: 126 SFLTHQFLHGDIMHLLGNMFFLIVCGFAVEAAIGHWRFLLFYLLSGVGA--------GFA 177
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAI--MLLDIFLNPKATLYFDFFIPV-----PAF 279
+++ W S P +GASGA++ + M L +F K ++ FF V PA
Sbjct: 178 QVATD----WT---SSQPLIGASGAISGVMAMYLAVFRFKKIEFFYWFFFLVGYFRAPAL 230
Query: 280 LLGVFLIGKDMLRI-IEGNSNISGSAHLG----GAAVAALAW 316
L+ F IGK++ + + +SN++ AH G GA + AW
Sbjct: 231 LILPFYIGKEIYQYQTDTDSNVAFMAHAGGFIAGAVLIGAAW 272
>gi|425744558|ref|ZP_18862613.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
gi|425490154|gb|EKU56454.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
Length = 268
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG+ L TS F H + H++ NM LY FG + G Y + LY+ + GSV
Sbjct: 63 SGQAERLFTSMFFHFGLIHLMLNMWALYIFGSVAEQLFGRSYYIALYVLAGLMGSVL--- 119
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
++L++ + DP P + A GA A+M L A F P+P
Sbjct: 120 -SSYLSIRDGYALLQHFDPKLLPHISA-GASGAVMGLG-----AALTVISLFPPLPQ--- 169
Query: 282 GVFLIGKDMLRIIEG--------NSNISGSAHLGGAAVAAL 314
FL+ K L ++ G S I+ +AH+GG + AL
Sbjct: 170 QRFLLDKKSLLMVMGINLVFGFTVSGINNAAHIGGMLMGAL 210
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N F L ++A P + F + G ++ L+TSAF H + H+ NM
Sbjct: 69 VTYALIGINLLAFAL-QMASPG-LQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ LYF G + LG + LY+ A+GGSV LVY
Sbjct: 127 LALYFVGPPLEAALGRARFITLYLVSALGGSV--LVY 161
>gi|29348241|ref|NP_811744.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|298386066|ref|ZP_06995623.1| rhomboid family protein [Bacteroides sp. 1_1_14]
gi|383121826|ref|ZP_09942530.1| hypothetical protein BSIG_1818 [Bacteroides sp. 1_1_6]
gi|29340144|gb|AAO77938.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251841412|gb|EES69493.1| hypothetical protein BSIG_1818 [Bacteroides sp. 1_1_6]
gi|298261294|gb|EFI04161.1| rhomboid family protein [Bacteroides sp. 1_1_14]
Length = 300
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 8/143 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L++ F H HI+ NM+ LY+FG ++L LY+ G I G +FY++ +
Sbjct: 68 SLLSYMFMHAGFLHILFNMLWLYWFGSLFLYFFSGKHLRGLYVLGGICGGLFYMIAYNIF 127
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
S+ P T +GAS +V AI+ + P + F V L + +I
Sbjct: 128 PYFSQTL------PFST-LVGASASVLAIVAATAYREPNYRVQLFLFGAVRLKYLALIVI 180
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
G D+L I N+ AHLGGA
Sbjct: 181 GTDLLFITSNNAG-GHIAHLGGA 202
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSA 172
W++ G + ++ + + N AV+ L + P+ A S D L GR LH LIT
Sbjct: 195 WQTAEPTMGETTLIGKIFLVNIAVYGLQTLM-PQLTAWGAKRS-DLLLEGRQLHRLITPV 252
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
F H + H+VSN L G ++ GP L Y+ + G++F V
Sbjct: 253 FLHGGIGHLVSNSYSLKSMGNNVEGAFGPARTLATYLVSGVAGNIFSAVN---------- 302
Query: 233 QGMWVVDPSRTPALGASGAV 252
S PA+GASGA+
Sbjct: 303 --------SPNPAVGASGAI 314
>gi|344205752|ref|YP_004790893.1| rhomboid family protein [Stenotrophomonas maltophilia JV3]
gi|343777114|gb|AEM49667.1| Rhomboid family protein [Stenotrophomonas maltophilia JV3]
Length = 230
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|150020776|ref|YP_001306130.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149793297|gb|ABR30745.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 233
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 30/166 (18%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
I+ F H H++ NM L+ FG ++ LG Y++G + F++++++F
Sbjct: 83 ISHMFIHGGWSHLLGNMWFLWIFGDNVEDRLGHFKYTIFYISGGLFALFFHMLFNSF--- 139
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIM---LLDIFLNPKATL---YFDFFIPVPAFLLG 282
S P +GASGA++A+M + + + TL + F I +PA
Sbjct: 140 ------------SLYPLVGASGAISAVMGAYFVQFWYSKIVTLIIWFIPFLIEIPAV--- 184
Query: 283 VFLIGKDMLRIIEGN-SNISGS-----AHLGGAAVAALAWARIRRR 322
+FL +++I+ G +NI+G+ AH+GG A ++++RR
Sbjct: 185 IFLFVWFLIQIVNGTFANITGTGIAYWAHIGGFIFGIYAGSKVKRR 230
>gi|319900800|ref|YP_004160528.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
gi|319415831|gb|ADV42942.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
Length = 296
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-VYHAF 225
+L+T F H + HI+ NM+ LY+FG + +L +Y+ G I G V Y+ Y+ F
Sbjct: 68 SLLTYMFMHAGLMHILFNMLWLYWFGALFLQFFSSRHLRGVYILGGICGGVLYMAAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ ++ LGAS +V A++ + P + F + L + +
Sbjct: 128 PYFRPMTEDSFM--------LGASASVLAVVAATAYREPNYPIRLFLFGTIRLKYLALIV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAAL 314
IG D+L I N+ AHLGGA L
Sbjct: 180 IGTDLLFITSSNAG-GHIAHLGGALAGLL 207
>gi|326335850|ref|ZP_08202029.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691994|gb|EGD33954.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 209
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LI+S F H + EH++ NMI LYFF I +G L +Y+ + G++F L +
Sbjct: 46 LISSGFLHANWEHLIFNMISLYFFHGIIIHGMGSFIFLLIYLGSIVFGNLFSLYIY---- 101
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
+ Q S A+GASG V+ I+ I L P + F +P + G
Sbjct: 102 ---RHQ-------SYYSAIGASGGVSGIIFAAIALFPYLQVNF-----IPGWFFGTLYFS 146
Query: 288 KDMLRIIE--GNSNISGSAHLGGAAVAALAWA 317
+ ++ N+ +AHLGGA +A A
Sbjct: 147 YSVYMMLNPRQGDNLGHAAHLGGAIFGLVAIA 178
>gi|163756485|ref|ZP_02163598.1| hypothetical protein KAOT1_08949 [Kordia algicida OT-1]
gi|161323593|gb|EDP94929.1| hypothetical protein KAOT1_08949 [Kordia algicida OT-1]
Length = 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V G+I+AN V + + D + + ++ G +ITSAF H D++H+ NM
Sbjct: 6 VTIGVIVANVLVSL--KGFDDYAFRSKYMFNVGAIHRGEHLRMITSAFLHADMQHLAFNM 63
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
I L+FF ++ LG L +Y+ + GS+F +H + A
Sbjct: 64 ITLFFFANTVIFELGATNFLLIYLGSLLLGSLFSFYFHK--------------NEYHYSA 109
Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
LGASGAV+ I+ I L P + +F IP F +G L ++ + NI AH
Sbjct: 110 LGASGAVSGILFSAILLRPHMMI--NFIIPGYVFAVGYLLFSIYGMK--KRTGNIGHDAH 165
Query: 306 LGGAAVAALAWARIRRR 322
GGA + +R+
Sbjct: 166 FGGAVAGFIITLALRKE 182
>gi|190572490|ref|YP_001970335.1| rhomboid family transmembrane protein [Stenotrophomonas maltophilia
K279a]
gi|424666760|ref|ZP_18103785.1| hypothetical protein A1OC_00318 [Stenotrophomonas maltophilia
Ab55555]
gi|190010412|emb|CAQ44020.1| putative rhomboid family transmembrane protein [Stenotrophomonas
maltophilia K279a]
gi|401069429|gb|EJP77950.1| hypothetical protein A1OC_00318 [Stenotrophomonas maltophilia
Ab55555]
gi|456737655|gb|EMF62332.1| Hypothetical protein EPM1_0006 [Stenotrophomonas maltophilia EPM1]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|47216517|emb|CAG02168.1| unnamed protein product [Tetraodon nigroviridis]
Length = 352
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSH 175
WL V G++ AN VF+ WR+ P + N S L T +I S+FSH
Sbjct: 138 WLSLTEGQRTVTGILAANALVFLCWRV--PALQPSMIRYFTSNPASKSLCTPMILSSFSH 195
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
H+ +NM L+ F S LG E + +Y++ AI
Sbjct: 196 FSFLHMAANMYVLWSFSTSAVSMLGREQFVAVYLSAAI 233
>gi|408823841|ref|ZP_11208731.1| rhomboid family protein [Pseudomonas geniculata N1]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|383809416|ref|ZP_09964936.1| peptidase, S54 family [Rothia aeria F0474]
gi|383447768|gb|EID50745.1| peptidase, S54 family [Rothia aeria F0474]
Length = 257
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHI--DVEHI 181
+ Y LI N V++L I ++ N F D S + ITS F H D H+
Sbjct: 74 NITYTLIGINVVVYLLQWIIPNYWVYNEFAYKADWVAYSHEYYRAITSGFLHSQNDPSHL 133
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
+ NM+ LY FG +I + +G L +Y+ +GGS +WV++P
Sbjct: 134 LLNMVSLYLFGAAIEKMIGNWRYLLVYLTAILGGSA----------------AVWVLEPH 177
Query: 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNIS 301
+GASG + +M +L L + L+GV +I ++ IS
Sbjct: 178 AV-VVGASGGIFGLM--GAYLTIMVALKERDNVRSVMVLIGVNVIYGFIM------PGIS 228
Query: 302 GSAHLGGAAVAALA 315
AHLGG A+A
Sbjct: 229 WQAHLGGFIAGAIA 242
>gi|322708891|gb|EFZ00468.1| rhomboid family protein [Metarhizium anisopliae ARSEF 23]
Length = 574
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR LR ++ G +IA N VF+ WR+ + N + I + + R TL
Sbjct: 332 RYRL---LRDVSTAHATVGTLIALNALVFLGWRVPPLWPLFNKYMIFV--VATVRPPTLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+ FSH + H++ NM+ L+F G ++ LG L LY+ GA G GS+ +L
Sbjct: 387 TAVFSHTRLSHMLVNMVPLWFIGTALHEELGRADFLALYLGCGAAGFLGSLVTYTLRGWL 446
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAV 252
++S LGASGA
Sbjct: 447 TVTS---------------LGASGAT 457
>gi|344211610|ref|YP_004795930.1| rhomboid family protein/GlpG-like protein [Haloarcula hispanica
ATCC 33960]
gi|343782965|gb|AEM56942.1| rhomboid family protein/GlpG-like protein [Haloarcula hispanica
ATCC 33960]
Length = 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T TS FSH + HI N I +YFFG + + +G + ++F+LV A
Sbjct: 132 TWFTSIFSHARWGLFHIFGNGIIIYFFGRLVEQQIGSKKF-----------AIFFLVSGA 180
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
+ M++ P+ LGASGA AIM L P +Y F IPVP + + F
Sbjct: 181 LAGLGQVGLQMFLSGPAYG-VLGASGAALAIMAFLTVLKPDLRVYLYFLIPVPIWAITAF 239
Query: 285 LIGKDMLRIIEGNSNISGSAHLGG 308
L I G ++ G+ LGG
Sbjct: 240 Y----FLLSIAGTFSMQGAGLLGG 259
>gi|46199412|ref|YP_005079.1| hypothetical protein TTC1110 [Thermus thermophilus HB27]
gi|55981443|ref|YP_144740.1| hypothetical protein TTHA1474 [Thermus thermophilus HB8]
gi|46197037|gb|AAS81452.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
gi|55772856|dbj|BAD71297.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIV 182
VV L++ N A F+L + P + F G + ++TS F H + H++
Sbjct: 16 VVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLL 75
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
SNM L+ FG ++ +G E L Y+ G + ++ ++ + S
Sbjct: 76 SNMWFLWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALF---------------MPAST 120
Query: 243 TPALGASGAVNAIMLLDIFLNPKATL------YFDFFIPVPAFLLGVFLIGKDMLRIIEG 296
P +GASGAV+A++ L P+A + F + +PA G +L L++++G
Sbjct: 121 VPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLALPA---GFYLGYWAFLQLVQG 177
Query: 297 NSNISGS---AHLGG 308
+ G AHLGG
Sbjct: 178 LLGVPGIAFWAHLGG 192
>gi|254520926|ref|ZP_05132981.1| peptidase, S54 (rhomboid) family, putative [Stenotrophomonas sp.
SKA14]
gi|219718517|gb|EED37042.1| peptidase, S54 (rhomboid) family, putative [Stenotrophomonas sp.
SKA14]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|423343017|ref|ZP_17320731.1| hypothetical protein HMPREF1077_02161 [Parabacteroides johnsonii
CL02T12C29]
gi|409216693|gb|EKN09676.1| hypothetical protein HMPREF1077_02161 [Parabacteroides johnsonii
CL02T12C29]
Length = 199
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F H D+ H++ NM + FG + G L G +V +
Sbjct: 43 LITHGFVHADMTHLLVNMFTFWSFGTYMESAFGYLGLGTGGYLGL---YFGGMVAASLYD 99
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
++ +R ++ V ++GASGAV+A++ IFL+P + F +P+P + GV +
Sbjct: 100 LARRRNDLYYV------SIGASGAVSAVLFTSIFLDPWGKILFFAVLPIPGIIFGVIYLA 153
Query: 288 KDMLRIIEGNSNISGSAHLGGA 309
+ NI+ +AH GA
Sbjct: 154 YCQYMAKKAGDNINHNAHFYGA 175
>gi|389722438|ref|ZP_10189077.1| hypothetical protein UU5_04134 [Rhodanobacter sp. 115]
gi|388441874|gb|EIL98110.1| hypothetical protein UU5_04134 [Rhodanobacter sp. 115]
Length = 202
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ L+T H D H+ NM+ L+FF GR + P Y + G G +FYL
Sbjct: 43 YRLLTYGLVHADGTHLFFNMLTLFFF----GRAMAPVYNASM---GIFGFGLFYL---GG 92
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
L +S + + S +LGASGAV+A++ I P + + IP+PA + V
Sbjct: 93 LLVSILPTYLKNRNNSNYYSLGASGAVSAVLFGYILFAPWSQI-LVLVIPMPAIIYAVLY 151
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAA 310
+ G +++ SAHL GAA
Sbjct: 152 TAYSIYMDRRGQDHVNHSAHLWGAA 176
>gi|386002483|ref|YP_005920782.1| rhomboid family protein [Methanosaeta harundinacea 6Ac]
gi|357210539|gb|AET65159.1| Rhomboid family protein [Methanosaeta harundinacea 6Ac]
Length = 236
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
G+I+ +F +A P F N+ L+ TLIT F H D+ H++ NMI L
Sbjct: 56 GMILILCVLFYFVSVAYPSF-TFNYLALRPALLAAHPWTLITHIFVHADMAHLLFNMIFL 114
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGA 248
+FFG + R +G L++++ + ++ G V P+ + +GA
Sbjct: 115 FFFGTELERRVGESRFLQIFIISGLVAAI----------------GQMAVLPAGS-MVGA 157
Query: 249 SGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGG 308
SGA+ +M + P+ T+ F IP+ + V L + NI+ AH+ G
Sbjct: 158 SGALFGVMGCLAVIAPEITVLLFFVIPL-SIRAAVVLFAIIDFAFMGSADNIAHMAHIAG 216
Query: 309 AAVAALAWA-----RIRRR 322
V LA+ R RRR
Sbjct: 217 LLV-GLAYGGILKDRYRRR 234
>gi|163756802|ref|ZP_02163911.1| rhomboid family protein [Kordia algicida OT-1]
gi|161323191|gb|EDP94531.1| rhomboid family protein [Kordia algicida OT-1]
Length = 298
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+IT AF H H++SN I LYF G + + +Y G + GS+F+L+ + FL
Sbjct: 69 TIITCAFLHASFGHLLSNCIVLYFSGRIFFTFFTEKQFITVYAYGILAGSLFFLLAYNFL 128
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ A+GAS AV AI++ P + I + +++ L+
Sbjct: 129 P---------TFRGTEATAVGASAAVLAILVAGAIYAPNYIVNLFGLIQIKYWIIAALLV 179
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAAL 314
+ I GN+ AH+GGA + L
Sbjct: 180 ISYISYIPYGNAG-GHYAHIGGALIGFL 206
>gi|448688552|ref|ZP_21694354.1| rhomboid family protein/GlpG-like protein [Haloarcula japonica DSM
6131]
gi|445779218|gb|EMA30155.1| rhomboid family protein/GlpG-like protein [Haloarcula japonica DSM
6131]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T TS FSH + HI N I +YFFG + + +G + ++F+LV A
Sbjct: 131 TWFTSIFSHARWGLFHIFGNGIIIYFFGRIVEQQIGSKKF-----------AIFFLVSGA 179
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVF 284
+ M++ P+ +GASGA AIM L P +Y F IPVP + + F
Sbjct: 180 LAGLGQVGLQMFLSGPAYG-VIGASGAALAIMAFLTVLKPDLRVYLYFLIPVPIWAITGF 238
Query: 285 LIGKDMLRIIEGNSNISGSAHLGG 308
L I G +I G+ LGG
Sbjct: 239 Y----FLLSIAGTFSIGGTGLLGG 258
>gi|329964253|ref|ZP_08301354.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
gi|328525558|gb|EGF52601.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
Length = 297
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+++T F H + HI+ NM+ LY+FG ++L +Y+ G I G V Y++ Y+ F
Sbjct: 68 SILTYMFMHAGLMHILFNMLWLYWFGALFLNFFSSKHLRGVYILGGICGGVLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
++D S LGAS +V AI+ + P + F + L + +
Sbjct: 128 PYFRP------MIDYSFM--LGASASVLAIVAATAYREPNYPIRLFLFGTIRLKYLALIV 179
Query: 286 IGKDMLRIIEGNSNISGSAHLGGA 309
IG D+L I N+ AHLGGA
Sbjct: 180 IGMDLLFITSSNAG-GHIAHLGGA 202
>gi|293608911|ref|ZP_06691214.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829484|gb|EFF87846.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 205
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
G++ IT F H D H++ NMI L+FFG SI + +Y + G +FYL
Sbjct: 43 GQIDRFITHGFIHADGTHLLFNMITLFFFG-SIIESFYRQYFYDM------GFVLFYLGG 95
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + S Q + + +LGASGAV+A++ I P ++ F
Sbjct: 96 LIFAILPSYLQHK---NDANWASLGASGAVSAVLFAYILFQPWKLIFVFFIPIPAIIFAI 152
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
++ + + GNS+I+ SAHL GAA +
Sbjct: 153 LY-VAYSIWAGKRGNSHINHSAHLWGAAYGIIV 184
>gi|156742892|ref|YP_001433021.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156234220|gb|ABU59003.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 231
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 37/204 (18%)
Query: 126 VVYGLIIANTAVFMLWRIA---DPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDV 178
V + +I+AN A F++ +A D + F + L+ ++ TL TS F H
Sbjct: 16 VNWAIILANIAFFLI-EVALGPDAERFVTMFAVVPARLLANPGPDQIATLFTSMFLHGGW 74
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H++SNM+ LY FG ++ +G L Y+ + ++ +++++
Sbjct: 75 SHLLSNMLALYIFGDNVEDRMGGGRYLTFYIICGLIAALTHILFN--------------- 119
Query: 239 DPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPAFL-LGVFLIGKDM 290
S P +GASGA++ ++ + L P A TL FF+P +PA + LGV+ + + +
Sbjct: 120 PDSPIPTIGASGAISGVLGAYLILYPTARVITLIPIFFLPWFVEIPALVYLGVWFLSQLL 179
Query: 291 ---LRIIEGNSNISGS---AHLGG 308
L II G G AH GG
Sbjct: 180 NGTLAIIIGAQGFGGVAWWAHAGG 203
>gi|300777685|ref|ZP_07087543.1| S54 family peptidase [Chryseobacterium gleum ATCC 35910]
gi|300503195|gb|EFK34335.1| S54 family peptidase [Chryseobacterium gleum ATCC 35910]
Length = 213
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LI+SAF H D H+ NM+ LYFF + G L LY I G++F L +
Sbjct: 45 LISSAFLHADFMHLFFNMLSLYFFQGVVISFFGETGFLILYFGSMILGNLFSLQIY---- 100
Query: 228 MSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIG 287
K Q + A+GASGAV+ I+ I + P + +F +P +L G G
Sbjct: 101 ---KNQPWY-------SAIGASGAVSGIIFASIAMAPN-EISVNF---LPGWLFGTLYFG 146
Query: 288 KDMLRIIEGN--SNISGSAHLGGA 309
+ ++ N+ +AHLGGA
Sbjct: 147 YSVYMMLNPKQWDNLGHAAHLGGA 170
>gi|194364083|ref|YP_002026693.1| rhomboid family protein [Stenotrophomonas maltophilia R551-3]
gi|194346887|gb|ACF50010.1| Rhomboid family protein [Stenotrophomonas maltophilia R551-3]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 25/147 (17%)
Query: 145 DPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD + + G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF 261
LL L++ +GG+V LV A M S Q + +GASGAV+A++ +
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQII----------IGASGAVSALIGAYLA 149
Query: 262 LNPKATL-------YFDFFIPVPAFLL 281
L P A L F F+ PA+LL
Sbjct: 150 LFPGARLGVVIPLGLFLEFVRAPAYLL 176
>gi|355779952|gb|EHH64428.1| hypothetical protein EGM_17628, partial [Macaca fascicularis]
Length = 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LIT 170
+W + LR V G+ AN VF LWR+ + M FT N S L + +
Sbjct: 51 KWWNNLRD--GQRTVTGITAANVLVFCLWRVPSLQRTMIRYFT---SNPASKVLCSPKLL 105
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMS 229
S FSH + H+ +N L+ F SI LG E + LY+ AG I V Y+ ++
Sbjct: 106 STFSHFSLFHMAANTYVLWSFSSSIVNILGQEQFMALYLSAGVISNFVSYVG-----KVA 160
Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL---I 286
+ R G P+LGASG + ++ P+ L F+P+ F L I
Sbjct: 161 TGRYG---------PSLGASGTIMMVLAAVCTKIPEGRLAI-IFLPMFTFTARNALKAII 210
Query: 287 GKDMLRIIEGNSNISGSAHLGGA 309
D +I G + HLGGA
Sbjct: 211 AVDTAGMIRGWKFFDHATHLGGA 233
>gi|268564576|ref|XP_002639150.1| C. briggsae CBR-ROM-5 protein [Caenorhabditis briggsae]
Length = 336
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 130 LIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIG 187
LI N AV++LW+ K FM FT +++ S L + ++ SAFSH + H+ NM
Sbjct: 136 LIGLNIAVYLLWKGKSIKPFMTRYFT---NSYASKSLCSPMLLSAFSHSSIIHLGLNMYV 192
Query: 188 LYFFGMSI-GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
+ F I + +GPE Y+ A+ S LV A + R G+ AL
Sbjct: 193 MSTFAPHIIEKFMGPEKFWSFYITAAVVSSFISLVDKAVM-----RSGI--------RAL 239
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL----GVF-LIGKDMLRIIEGNSNIS 301
GASGA+ A++ P A L F VP F V+ +I D+L +
Sbjct: 240 GASGAILAVLTYTCMQIPDARLSLIF---VPGFEFSAKSAVYGIIAFDLLGLFLRFRLFD 296
Query: 302 GSAHLGGA 309
+AHLGG+
Sbjct: 297 HAAHLGGS 304
>gi|302772887|ref|XP_002969861.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
gi|300162372|gb|EFJ28985.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
Length = 248
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S R + IT+ F H + HI SN+ LY FG + G L Y+ +G ++
Sbjct: 99 SPRWYQFITATFCHGNWGHISSNLFFLYMFGKLVEEEEGGFGLWASYIVTGVGANLLS-- 156
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
W++ P ++GASGAV + + + + L +D+ + +L
Sbjct: 157 --------------WLLLPGNVVSIGASGAVFGLFAISVLVK----LSWDWRKLLEVLVL 198
Query: 282 GVFLIGK--DMLRIIEGNSNISGSAHLGGAAVAA-LAWA 317
G F++ K + ++++ S+++ AH GA V L WA
Sbjct: 199 GQFVVNKVVEETQMLQAASSVNHVAHCAGAMVGVLLIWA 237
>gi|291295279|ref|YP_003506677.1| rhomboid family protein [Meiothermus ruber DSM 1279]
gi|290470238|gb|ADD27657.1| Rhomboid family protein [Meiothermus ruber DSM 1279]
Length = 211
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 143 IADPKFMANNFTISLDNFLS---GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
+ DP + + F++ G TL +S F H + HI+ NM L+ FG +I L
Sbjct: 34 LTDPAVVIGAYGFVPARFVADPFGEWITLFSSMFLHGSLLHILGNMWFLWVFGDNIEDRL 93
Query: 200 GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLD 259
G L Y+ G + ++ QG+ S P +GASGA++A++
Sbjct: 94 GHGRFLLFYLLGGVAAALI--------------QGLVSGFSSDVPMIGASGAISALLGAY 139
Query: 260 IFLNPKA---TLYFDFFIPVPAFL-LGVFLIGKDMLRIIEGNSNISGSAHLGG--AAVAA 313
I L P+A +L +PVPA + LG +L+ + G I+ AH+GG A V
Sbjct: 140 IVLYPRALILSLIGWIPVPVPAVIYLGYWLL-IQFVGDFMGEEGIAFWAHIGGFLAGVVL 198
Query: 314 LAW 316
+ W
Sbjct: 199 IRW 201
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ +G+ H L+TS F H++ HI NM+ L+ G + LG L LY+ +GGS
Sbjct: 116 EGISTGQYHRLLTSVFLHVEWWHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSA 175
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
++++ TP LGASGAV ++ + L + L ++ PV
Sbjct: 176 L----------------VYLLTAPNTPTLGASGAVCGLLGATVVLARR--LRYEMR-PV- 215
Query: 278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW------ARIRRRGF 324
LG+ L+ + + G ++S AH+GG AL A RRR F
Sbjct: 216 LVTLGLMLL---VTFVPFGGLSVSWQAHIGGLVTGALVALGLLVPAAGRRRAF 265
>gi|219850368|ref|YP_002464801.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219544627|gb|ACL26365.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 232
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 126 VVYGLIIANTAVFMLW----RIADPKFMANNFTISLDNFLSGRLH-----TLITSAFSHI 176
V + L+ AN VF+L R+A+ N + FLS L T+ TS F H
Sbjct: 16 VNWALLAANVVVFLLMARNVRLAESWI--NGLALVPVRFLSNPLDPTEWLTVFTSMFMHG 73
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
H+ SNM+ LY FG ++ +G + L Y+ + + + H F +S
Sbjct: 74 GWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAA----LTHVFFNPTSP----- 124
Query: 237 VVDPSRTPALGASGAVNAIMLLDIFLNPKA---TLYFDFFIP----VPAFL-LGVFLIGK 288
P +GASGA++ ++ + P A TL FF+P +PA + LG + + +
Sbjct: 125 ------IPTVGASGALSGVLAAYLLFFPSARIITLVPIFFLPWFVEIPAVVYLGFWFLSQ 178
Query: 289 ------DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
+L ++ ++ AH+GG A A L A I R+
Sbjct: 179 LANGVFSILIDVQAMGGVAWWAHIGGFA-AGLVLAPIFRQ 217
>gi|294506415|ref|YP_003570473.1| Rhomboid protease glpG [Salinibacter ruber M8]
gi|294342743|emb|CBH23521.1| Rhomboid protease glpG [Salinibacter ruber M8]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+ F H H+ NMI YFFG + LG L LY L HA L
Sbjct: 68 LTAGFVHASGTHLAFNMITFYFFGPLLEGILGIGAFLLLYFGSE-------LAAHA-LTF 119
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG------ 282
++ R DP+ + A+GASGA++ ++ P LY F +P+PA L
Sbjct: 120 AAHRD-----DPNYS-AVGASGAISGVVFAFCVFFPLRNLYLFFALPIPAVLFAFGYVFG 173
Query: 283 -VFLIGKDMLRIIEGNSN--ISGSAHLGGA 309
++ +G D G+ I+ AH+GGA
Sbjct: 174 SIYAMGGDSRGGARGSVGDWIAHEAHVGGA 203
>gi|429210153|ref|ZP_19201320.1| Rhomboid protease AarA [Pseudomonas sp. M1]
gi|428158927|gb|EKX05473.1| Rhomboid protease AarA [Pseudomonas sp. M1]
Length = 483
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L L S F H D H+ NM+ L+ FG ++ LG L LY+ + + +
Sbjct: 141 LLGLFGSMFLHGDFWHLAGNMVFLFIFGFALEIALGRLKYLALYLVSGLCSGLLW----- 195
Query: 225 FLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI-------PVP 277
W +DP +GASGA++ +M + I + + F +++ P
Sbjct: 196 -----------WALDPVWVTGIGASGAISGLMGMYIGVYGLRRIRFFYWLGPLLGYFSAP 244
Query: 278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAA 310
A + +GK++ ++ +++ AHLGG A
Sbjct: 245 ALWILPLWMGKELYGLLRAADHVNYYAHLGGLA 277
>gi|89094354|ref|ZP_01167295.1| integral membrane protein [Neptuniibacter caesariensis]
gi|89081413|gb|EAR60644.1| integral membrane protein [Oceanospirillum sp. MED92]
Length = 481
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L+T F H D+ H++ NM L FG ++ +G L Y+ + G + ++ +A
Sbjct: 149 SLLTHQFLHGDLLHLMGNMFFLIVFGFAVEAAIGQIRFLIFYLLSGLAGGILFMTVNA-- 206
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAI--MLLDIFLNPKATLYFDFFIPV-----PAF 279
S + +GASGA++ + M L +F K ++ FI V PA
Sbjct: 207 -------------DSPSALVGASGAISGVMAMYLGVFRLRKIEFFYWLFIFVGFIRAPAL 253
Query: 280 LLGVFLIGKDMLR-IIEGNSNISGSAHLGGAAVAAL 314
+ I ++ + + +SN++ AH+GG A+
Sbjct: 254 WVLALYIANELFNFMTQTDSNVAFMAHIGGFIAGAI 289
>gi|359407888|ref|ZP_09200362.1| putative membrane protein [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356677251|gb|EHI49598.1| putative membrane protein [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 284
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++ TS F H H+ SNM+ L+ F ++ +GP + Y +G
Sbjct: 73 SIFTSMFLHGGWLHLGSNMLYLWIFSDNVEDAMGPVRFIIFYALCGVGA----------- 121
Query: 227 AMSSKRQGMWVVDP-SRTPALGASGAVNAIMLLDIFLNPKAT-------LYFDFFIPVPA 278
A S ++DP S TP +GASG + I+ I L+PKA L F I +PA
Sbjct: 122 AFSQS-----IIDPFSVTPMVGASGGIAGILGAYILLHPKAAVRVFMLILVFIRIISLPA 176
Query: 279 FL-LGVFLIGK--DMLRIIEGNSNISGSAHLGG 308
+L LG+++ G+ + G +++ AH+GG
Sbjct: 177 WLVLGIWIAGQFVSAPTTLSGGGDVAYFAHIGG 209
>gi|300771462|ref|ZP_07081337.1| rhomboid family protein [Sphingobacterium spiritivorum ATCC 33861]
gi|300761451|gb|EFK58272.1| rhomboid family protein [Sphingobacterium spiritivorum ATCC 33861]
Length = 225
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--- 220
++ +IT F H HI NM L FG I + LG + L Y+ +G V
Sbjct: 44 KVWQIITYMFMHGGFTHIFFNMFSLLMFGPMIEQVLGSKRFLNFYLFTGLGALVLQYGIQ 103
Query: 221 ---VYHAFLAMSSKRQGM-----------WVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266
+Y RQG+ ++ + + TP +GASGA+ I+L +L P
Sbjct: 104 AIELYQLVGTSFPVRQGIDMNALSFEQIAFIKEINYTPLVGASGAIYGILLAFAYLFPNI 163
Query: 267 TLYFDFFIPVP---AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVA 312
L FIP+P + +G ++ + L + +++ AH+GGA A
Sbjct: 164 PLQL-IFIPIPIKAKYFIGGLIVIEIYLSLSRPGDSVAHLAHVGGALFA 211
>gi|452847249|gb|EME49181.1| hypothetical protein DOTSEDRAFT_163305 [Dothistroma septosporum
NZE10]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG--PEYLLKLYMAGAIGGSVFYLVY 222
L+T +T+ F H+D H++SNMIGL R G P ++ + + +I S +
Sbjct: 133 LYTWLTNGFIHLDASHLISNMIGLVSVAPICSRVPGMTPSHVFAITIGSSICASAAQVTE 192
Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
F + R+ A+GASG V A + + + + F I VP +++G
Sbjct: 193 WKFRVVPGHREAF-------MHAIGASGIVKAFIAVAAAGAREEPVTL-FGISVPCWIVG 244
Query: 283 VFLIGKD---MLRIIE-------------GNSNISGSAHLGGAA 310
+ I D +LR+ E I +AHLGGAA
Sbjct: 245 LLSIAGDVAGLLRLDELMVGKRKSWLDAMRQPRIGYAAHLGGAA 288
>gi|451855612|gb|EMD68904.1| hypothetical protein COCSADRAFT_109975 [Cochliobolus sativus
ND90Pr]
Length = 271
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 119 RQYGSSEVVYGLIIANTAVF----MLWRIADPKFMA------NNFTISLDNFLSGRLHTL 168
R +++V+Y L+ N AVF L + A F +T++ F +G +
Sbjct: 57 RVSANTKVLYTLMGTNIAVFSYAMYLQQQAAQGFPGPWHRFLRTWTLNFSEFKTGSYLPV 116
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGM---SIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ + F+H++ H+ SNM YF G S + P L + + + G + YL+ +
Sbjct: 117 LLANFTHVNAFHLFSNMFTFYFLGQFLASAAPLITPARFLTVALGSGLSGGLGYLISRYY 176
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
+ QG D R +G SG V + + L P A + +PVP + L
Sbjct: 177 ---KMRDQGPRARDTVR--GMGFSGVVMGVSSVAACLAPHAKVLIYGIVPVPLWGLVAGY 231
Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAW-ARIR 320
D + N+ I+ HLGG A L + A++R
Sbjct: 232 AVYDGYFVNSANTTIAHGGHLGGLAFGLLYYFAKLR 267
>gi|404406119|ref|ZP_10997703.1| hypothetical protein AJC13_11845 [Alistipes sp. JC136]
Length = 200
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 85/213 (39%), Gaps = 27/213 (12%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--LHT--LITSAFS 174
R + + VV LII N V+M A N + G HT IT F
Sbjct: 3 RYFQTPPVVKNLIIINVLVYM----ATALLPVGNQIMEYCALSLGTPFFHTYQFITYMFL 58
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAFLAMSSKRQ 233
H + EHI NM L+ FG ++ LG + L YM IG ++ YL AF
Sbjct: 59 HANFEHIFFNMFALWMFGRTLEYELGSQRFLTFYMVCGIGAALIQYLTALAF-------- 110
Query: 234 GMWVVDPSRTPAL--GASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDM 290
P L GASGAV ++L ++P A + IP+ A + ++
Sbjct: 111 -------GELPLLLVGASGAVMGLLLAFGVMHPNAVIMLLIPPIPMKAKWFVIIYAVIEL 163
Query: 291 LRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 323
G N++ AH+GG L +RRG
Sbjct: 164 FLGWRGVGNVAHFAHVGGMLWGFLLLHWWKRRG 196
>gi|150003566|ref|YP_001298310.1| transmembrane rhomboid family protein [Bacteroides vulgatus ATCC
8482]
gi|345517236|ref|ZP_08796714.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|423313295|ref|ZP_17291231.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
gi|149931990|gb|ABR38688.1| putative transmembrane rhomboid family protein [Bacteroides
vulgatus ATCC 8482]
gi|254833999|gb|EET14308.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|392685645|gb|EIY78960.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
Length = 225
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVEHIVSNMIG 187
L+I N F +A + N + L F++ + LIT F H +HI NM
Sbjct: 11 LLIINVLCFFGGVVAMKYGIDLNDLLGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFA 70
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVYHAFLAM-SSKRQGMWVVDPS 241
L+ FG ++ + GP+ L YM IG V Y+ Y L+ S G+ V+ +
Sbjct: 71 LWMFGRTLEQVWGPKRFLSYYMVCGIGAGLVQELVQYIQYVTELSQYDSVNTGIAVIPMA 130
Query: 242 R----TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEG- 296
+GASGA+ I+L L P + + F F IP P F++G L I G
Sbjct: 131 EYLNLMTTVGASGAIYGILLAFGMLFPNSQM-FVFPIPFPV-KAKYFVMGYAALEIFLGL 188
Query: 297 ---NSNISGSAHLGGAA---VAALAWARIRRRG 323
++ AHLGG + + W + G
Sbjct: 189 GASTDGVAHFAHLGGMIFGFILIMYWRKKNNNG 221
>gi|221056036|ref|XP_002259156.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193809227|emb|CAQ39929.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 372
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 138 FMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
F L+ +FM N+F +L+TLIT+ SH V+ ++ N I L++ G S
Sbjct: 227 FGLFNFLTTEFMYNHFCCGAQQLRERKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEM 286
Query: 198 TLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIML 257
+ Y + S + YH SS ++V LGASG++++I+
Sbjct: 287 IINSRNFFLTYFISGMISSYIQICYHKN-GRSSSYGNVYV--------LGASGSISSILT 337
Query: 258 LDIFLNPKATLYFDFFIPVPAFLLGV 283
+ PK +Y + +P GV
Sbjct: 338 TYTLMFPKNNIYLYGVLALPLVGSGV 363
>gi|189220422|ref|YP_001941062.1| membrane associated serine protease [Methylacidiphilum infernorum
V4]
gi|189187280|gb|ACD84465.1| Membrane associated serine protease [Methylacidiphilum infernorum
V4]
Length = 240
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
F ++ D L GRL +T AF H +VE H+++N I +YF G + + LG L L++
Sbjct: 55 FALTTDGVLHGRLWEFLTYAFLHDEVEPPHLLTNAIVIYFLGNQLEKVLGHLRLALLFLG 114
Query: 211 GAIGGSVFY-----------------LVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVN 253
GAI G + + +V+ LA + Q +W+ R+ N
Sbjct: 115 GAISGGLGWYFFGGPMHEHGLIGASGVVFSFLLAFAFCLQEIWI----RSIIFNQDIDSN 170
Query: 254 AIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAA 313
+ NP +FF+ + +L VF+I + + + + + S +AHL GA
Sbjct: 171 RFI-----FNP------NFFLIIQVLVL-VFVIFEALCVVFDIPTGSSHTAHLAGAIFGY 218
Query: 314 L 314
L
Sbjct: 219 L 219
>gi|83814935|ref|YP_444663.1| integral membrane protein [Salinibacter ruber DSM 13855]
gi|83756329|gb|ABC44442.1| putative integral membrane protein [Salinibacter ruber DSM 13855]
Length = 230
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+ F H H+ NMI YFFG + LG L LY L HA L
Sbjct: 68 LTAGFVHASGTHLAFNMITFYFFGPLLEGILGIGAFLLLYFGSE-------LAAHA-LTF 119
Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG------ 282
++ R DP+ + A+GASGA++ ++ P LY F +P+PA L
Sbjct: 120 AAHRD-----DPNYS-AVGASGAISGVVFAFCVFFPLRNLYLFFALPIPAVLFAFGYVFG 173
Query: 283 -VFLIGKDMLRIIEGNSN--ISGSAHLGGA 309
++ +G D G+ I+ AH+GGA
Sbjct: 174 SIYAMGGDSRGGARGSVGDWIAHEAHVGGA 203
>gi|379005158|ref|YP_005260830.1| hypothetical protein Pogu_2196 [Pyrobaculum oguniense TE7]
gi|375160611|gb|AFA40223.1| putative membrane protein [Pyrobaculum oguniense TE7]
Length = 231
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
L+ N AVF ++ + P+ + I + + + +T F H + HIV NMI L
Sbjct: 20 ALVFINIAVF-IYELVKPEIILQYSLIP--AYAWDQPYRWVTHMFLHGGLLHIVGNMIYL 76
Query: 189 YFFGMSIGRTLGPEYLLKLY-MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALG 247
+ FG ++ G L LY M G + V Y + A+ + G +P TP LG
Sbjct: 77 WVFGDNVEDHYGHLRFLLLYLMWGFVAALVQYQI-TAWQTAAMAAAGP-FNNPMYTPMLG 134
Query: 248 ASGAVNAIMLLDIFLNPKA---TLYFDFFI---PVPA-------FLLGVFLIGKDMLRII 294
ASGA++ ++ + L P+A TL F F I +PA FL +F D+ +
Sbjct: 135 ASGAISGVLGAYMILYPRATIVTLVFFFVITIVEIPAWVYIGFWFLYQLFYGAVDLFTL- 193
Query: 295 EGNSNISGSAHLGGAAVAALAWARIRRR 322
S ++ AH+GG AL A I RR
Sbjct: 194 -QPSGVAYFAHIGGFLAGALT-AMIYRR 219
>gi|294777625|ref|ZP_06743076.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
gi|294448693|gb|EFG17242.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
Length = 225
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS-----VFYLVY 222
LIT F H +HI NM L+ FG ++ + GP+ L YM IG V Y+ Y
Sbjct: 51 LITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFLSYYMVCGIGAGLVQELVQYIQY 110
Query: 223 HAFLAM-SSKRQGMWVVDPSR----TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
L+ S G+ V+ + +GASGA+ I+L L P + + F F IP P
Sbjct: 111 VTELSQYDSVNTGIAVIPMAEYLNLMTTVGASGAIYGILLAFGMLFPNSQM-FVFPIPFP 169
Query: 278 AFLLGVFLIGKDMLRIIEG----NSNISGSAHLGGAA---VAALAWARIRRRG 323
F++G L I G ++ AHLGG + + W + G
Sbjct: 170 V-KAKYFVMGYAALEIFLGLGASTDGVAHFAHLGGMIFGFILIMYWRKKNNNG 221
>gi|428777216|ref|YP_007169003.1| rhomboid family protein [Halothece sp. PCC 7418]
gi|428691495|gb|AFZ44789.1| Rhomboid family protein [Halothece sp. PCC 7418]
Length = 372
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 22/158 (13%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ LITS F H + +H+ SN+ LY FG + G ++ Y+ +G ++ L++
Sbjct: 225 YQLITSMFCHANWQHLSSNLFFLYLFGKLVEEEEGVMGIVGSYLICGLGANLMSLMFQ-- 282
Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
PS +LGASGAV + + + L L + + + +LG F+
Sbjct: 283 --------------PSYVVSLGASGAVFGLFTVSVLLK----LGWHWRRLLEVIILGQFV 324
Query: 286 IGKDM--LRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ + + L+ ++ I+ AHLGGA + + ++R
Sbjct: 325 LQRVLFELQNLDRVDGINRIAHLGGALMGVILILGLKR 362
>gi|393241997|gb|EJD49517.1| hypothetical protein AURDEDRAFT_182989 [Auricularia delicata
TFB-10046 SS5]
Length = 359
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 100 AQFPERSFASFRYRW----RSWLR-QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT 154
+ PER + RW +L+ Q S +V G+ + N +VF+ R P+ N
Sbjct: 45 SPLPERLRGNGALRWPFDNAEYLKYQLDSFQVATGITVINLSVFLAPRC--PRLWGNLGR 102
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
+ + LSGR +TL T+ F HIDV H+ N +YFF
Sbjct: 103 HMIHHGLSGRSYTLFTAGFCHIDVFHLACNTACIYFFA 140
>gi|406862785|gb|EKD15834.1| rhomboid family protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 552
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMA-NNFTISLDNFLSGRLHTLI 169
R WR W S+ + +I+AN V W P F N F I + + R LI
Sbjct: 321 RAEWRMWPDMPPSAATIIAIILANAIVLGAWHFP-PAFRGLNKFFIMVPGY--PRAIALI 377
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAM 228
+ FSH V H SNMI L+ FG + +G L +Y+ G GG F+++
Sbjct: 378 GAIFSHQTVTHFASNMIFLWIFGTRLHDEIGRGNFLAVYLICGVFGG---------FISL 428
Query: 229 SSKRQGMWVVDPS-RTPALGASGAVNAIMLLDIFLNPKATL-YFDFFIP-----VPAFLL 281
SS WV+ + + ++GAS AV +M + + K + F F P + + L
Sbjct: 429 SS-----WVIRNNFASSSVGASCAVAGVMATYLLSDSKEKMKLFGVFPPENWPSISSLAL 483
Query: 282 GVFLIGKDMLRIIEGNSNISGS--AHLGGAAVAALA 315
+IG D+L + + + +S HLGG A A
Sbjct: 484 LCLMIGTDVLFLWKKQNVVSIDHWGHLGGYAAGITA 519
>gi|340351726|ref|ZP_08674629.1| rhomboid family protein [Prevotella pallens ATCC 700821]
gi|339616940|gb|EGQ21575.1| rhomboid family protein [Prevotella pallens ATCC 700821]
Length = 319
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 21/201 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSAFSHIDVEHIVS 183
V L+I N F+ + + N + L FL+ H +IT F H HI+
Sbjct: 7 VTKNLLILNILAFIAGIMLSRMGIDLNNILGLHFFLANDFHLWQIITYMFMHGSFMHILM 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV--YHAFLAMSSKRQGMWVVDPS 241
NM L+ FGM + GP+ L Y+ IG + + Y ++A R +
Sbjct: 67 NMFMLWMFGMVMENVWGPKKFLLYYIITGIGAGLCQELAQYANYMAEGLNRYQYLATEMG 126
Query: 242 RTP---------ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI-GKDML 291
R P +GASGAV ++L P + F IP+P L ++I G +
Sbjct: 127 RIPMENYLNLWTTVGASGAVYGVLLAFGLTFPNERM---FIIPIPIPLKAKWIIMGSIAM 183
Query: 292 RIIEG----NSNISGSAHLGG 308
+ N ++ AHLGG
Sbjct: 184 ELFSAMSTTNDGVAHLAHLGG 204
>gi|145220568|ref|YP_001131277.1| rhomboid family protein [Chlorobium phaeovibrioides DSM 265]
gi|145206732|gb|ABP37775.1| Rhomboid family protein [Chlorobium phaeovibrioides DSM 265]
Length = 271
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 26/173 (15%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+NF R+ T F H HI NM L+ FG I G + + Y +G ++
Sbjct: 55 ENF---RIWQPFTYMFMHGGTTHIFFNMFALWMFGAEIENYWGTKEFIWYYFVCGVGAAI 111
Query: 218 FYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277
LV + P +GASGAV I+L + P ++ F P+
Sbjct: 112 INLV---------------ATTGTLYPTVGASGAVYGILLAFGMMFPGRYIFLYFLFPIK 156
Query: 278 A------FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
A F L F+ G R + SNI+ AHLGG + + + ++RR F
Sbjct: 157 AKYFIAGFALIEFMSGLGS-RTMGSGSNIAHFAHLGGMLIGFI-YITLKRRDF 207
>gi|126739140|ref|ZP_01754834.1| rhomboid family protein [Roseobacter sp. SK209-2-6]
gi|126719757|gb|EBA16465.1| rhomboid family protein [Roseobacter sp. SK209-2-6]
Length = 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 30/162 (18%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +L++S F H + H+ NM+ L+ FG ++ +G L Y+A IG + ++
Sbjct: 89 SGDGQSLLSSIFVHAGLMHLAGNMLFLWIFGDNMEEEMGHIPFLLFYLASGIGAGLIHV- 147
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFF-------I 274
W S P +GASGA+ +M + L PKA + F I
Sbjct: 148 --------------WSAPNSLVPTVGASGAIAGVMGGYLLLFPKAKVDILLFLIVYFRII 193
Query: 275 PVPAF-LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 315
+PAF +LG++ +I+ I S GG A A A
Sbjct: 194 TIPAFIMLGLWF-------VIQFIGGIGSSPEQGGVAYWAHA 228
>gi|20092655|ref|NP_618730.1| rhomboid protein [Methanosarcina acetivorans C2A]
gi|19917938|gb|AAM07210.1| rhomboid protein [Methanosarcina acetivorans C2A]
Length = 226
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L R TL+T F H + H+ NM+ LYFFG ++ R +G + LL ++ + ++ Y
Sbjct: 65 LLARPWTLVTYIFLHTGLWHLFFNMLVLYFFGTALERRVGNKQLLGIFFTAGVLSAIGY- 123
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV---- 276
AFL+ + ++ + P P +GASGA+ + L P +Y +F+P+
Sbjct: 124 ---AFLS-----RPIFNIYPG--PMVGASGAIYGVFAALTVLEPNIKVYV-YFVPMRLKH 172
Query: 277 PAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
L VF D L ++ + I+ +AHL G V R+++
Sbjct: 173 ALLLFAVF----DFL-MVNSSDMIAHTAHLSGLFVGLYMGFRMKK 212
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ YGLII N +++ L +D K + + N + G + LITS F H + EH
Sbjct: 158 MTYGLIIINVLIWLIMILYLNHFSDVKLLDLGGLVHF-NVVHGEWYRLITSMFLHFNFEH 216
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I+ NM+ L+ FG + +GP +L +Y+ + G+ F+++S
Sbjct: 217 ILMNMLSLFIFGKIVESIVGPLRMLGIYVISGLLGN--------FISLSFNLH------- 261
Query: 241 SRTPALGASGAV 252
T ++GASGA+
Sbjct: 262 --TVSVGASGAI 271
>gi|163815032|ref|ZP_02206419.1| hypothetical protein COPEUT_01188 [Coprococcus eutactus ATCC 27759]
gi|158449715|gb|EDP26710.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 377
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIGGSVFYLVYHAFL 226
L++S F H +H+V NM L+ FG ++ + LG + +Y ++G + G + + H
Sbjct: 96 LLSSMFLHSGFDHLVGNMFALFMFGSTVEKKLGSLRMTIIYFVSGIVSGLISMNLSH--- 152
Query: 227 AMSSKRQGMWVVDPSRTP-ALGASGAVNAIMLLDIFLN---PKATLYFDFFIPVPAFLLG 282
V+DPSR ++GASGAV +M +FL+ K D I + ++
Sbjct: 153 ----------VMDPSRMHFSIGASGAVFGVMCAAVFLSVMGSKKASRRDMTIAIVLVVI- 201
Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL--------AWARIRRRGF 324
I NI AH+GGA V + W R R F
Sbjct: 202 --------YAIYTYEENIDIYAHIGGAVVGGILAFALNVRKWERFRENKF 243
>gi|385209201|ref|ZP_10036069.1| putative membrane protein [Burkholderia sp. Ch1-1]
gi|385181539|gb|EIF30815.1| putative membrane protein [Burkholderia sp. Ch1-1]
Length = 196
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 30/208 (14%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT---ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N A F++ ++ DP + F + + + + L+T + H + H+ NM
Sbjct: 5 LIILNAAAFLVEQL-DPDRLIALFALWPVGGNGNPAFHVWQLLTYSLLHANFMHLAVNMF 63
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
LY FG + T+G +L+ LY I G++ L+ LA ++ R PA+
Sbjct: 64 ALYMFGRDVEATIGRAHLVVLYGTSVISGALLQLLVG--LADTT----------VRVPAI 111
Query: 247 GASGAVNAIMLLDIFLNPKATLYFDF-FIPVPAFLLGVFLIGKDMLRIIEG----NSNIS 301
GAS V +++ L P+ + F +P+PA+L F G +L ++ G S ++
Sbjct: 112 GASAGVFGLLVGYALLFPRRRVILLFPPVPMPAWL---FATGYGVLELLLGIAGAQSGVA 168
Query: 302 GSAHLG---GAAVAALAWA---RIRRRG 323
AH+G GA L W R RR G
Sbjct: 169 HFAHVGGMLGAVTLLLHWMHTPRERRLG 196
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 35/197 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMAN------NFTISLDNFLS---GRLHTLITSAFSHIDVEH 180
LI N AVF L +F++ F+ L + + + L+T+ F H ++ H
Sbjct: 94 LIGLNVAVFALVLSLGERFVSQLELIGYAFSPQLGEIVGVAHDQWYRLLTAVFLHQELSH 153
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I+ N++GL+F G + LG L LY+ +GGS A+L V +P
Sbjct: 154 ILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTL-----AYL----------VAEP 198
Query: 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNI 300
++ P+LGASGA+ +M + L + L + +LGV L+ + +I
Sbjct: 199 NQ-PSLGASGAIFGLMGAFVVLARRVQLDMRPVV----LILGVSLV------LTFTRPDI 247
Query: 301 SGSAHLGGAAVAALAWA 317
S H+GG A+ A
Sbjct: 248 SWEGHIGGLVTGAVIAA 264
>gi|381157556|ref|ZP_09866790.1| putative membrane protein [Thiorhodovibrio sp. 970]
gi|380881419|gb|EIC23509.1| putative membrane protein [Thiorhodovibrio sp. 970]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 23/152 (15%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY-LLKLYMAGAIGGSVFYLVYHAFL 226
++TS+ +H D +H++ NMI F ++ +G + + + A A+ Y V
Sbjct: 141 VLTSSLAHADWQHLIGNMIFFIAFAPALELLVGGKLRYIAILFATAVTADCAYSV----- 195
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFI--PV-----PAF 279
++ PALG SG V ++ L FL PKA + F++ PV PA+
Sbjct: 196 --------TVLLGAEPLPALGFSGVVTGMIGLSAFLMPKARIKTLFWVGFPVGHSYIPAW 247
Query: 280 LLGVFLIGKDMLRIIEGNS--NISGSAHLGGA 309
+L V+ IG D R+I N+ AH+ G
Sbjct: 248 ILAVWFIGLDTWRVISSADVGNVLVIAHVAGG 279
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHI--DVEHIV 182
V Y LI N V++L I ++ + F + D +G + ++TS F H D HIV
Sbjct: 75 VTYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIV 134
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR 242
NM+ LY FG+++ + +G L +Y+ +GGS G+ ++D
Sbjct: 135 MNMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGSF----------------GVLLLDDPT 178
Query: 243 TPALGASGAV 252
+GASG +
Sbjct: 179 AEVVGASGGI 188
>gi|60683641|ref|YP_213785.1| rhomboid family protein [Bacteroides fragilis NCTC 9343]
gi|265767352|ref|ZP_06095018.1| rhomboid family protein [Bacteroides sp. 2_1_16]
gi|336411621|ref|ZP_08592085.1| hypothetical protein HMPREF1018_04103 [Bacteroides sp. 2_1_56FAA]
gi|375360472|ref|YP_005113244.1| putative transmembrane rhomboid family protein [Bacteroides
fragilis 638R]
gi|383119731|ref|ZP_09940469.1| hypothetical protein BSHG_3456 [Bacteroides sp. 3_2_5]
gi|423251853|ref|ZP_17232861.1| hypothetical protein HMPREF1066_03871 [Bacteroides fragilis
CL03T00C08]
gi|423252833|ref|ZP_17233764.1| hypothetical protein HMPREF1067_00408 [Bacteroides fragilis
CL03T12C07]
gi|423259870|ref|ZP_17240793.1| hypothetical protein HMPREF1055_03070 [Bacteroides fragilis
CL07T00C01]
gi|423267525|ref|ZP_17246506.1| hypothetical protein HMPREF1056_04193 [Bacteroides fragilis
CL07T12C05]
gi|423271973|ref|ZP_17250942.1| hypothetical protein HMPREF1079_04024 [Bacteroides fragilis
CL05T00C42]
gi|423276022|ref|ZP_17254965.1| hypothetical protein HMPREF1080_03618 [Bacteroides fragilis
CL05T12C13]
gi|423282802|ref|ZP_17261687.1| hypothetical protein HMPREF1204_01225 [Bacteroides fragilis HMW
615]
gi|60495075|emb|CAH09894.1| putative transmembrane rhomboid family protein [Bacteroides
fragilis NCTC 9343]
gi|251944655|gb|EES85130.1| hypothetical protein BSHG_3456 [Bacteroides sp. 3_2_5]
gi|263252657|gb|EEZ24169.1| rhomboid family protein [Bacteroides sp. 2_1_16]
gi|301165153|emb|CBW24723.1| putative transmembrane rhomboid family protein [Bacteroides
fragilis 638R]
gi|335941417|gb|EGN03274.1| hypothetical protein HMPREF1018_04103 [Bacteroides sp. 2_1_56FAA]
gi|387775908|gb|EIK38012.1| hypothetical protein HMPREF1055_03070 [Bacteroides fragilis
CL07T00C01]
gi|392649104|gb|EIY42787.1| hypothetical protein HMPREF1066_03871 [Bacteroides fragilis
CL03T00C08]
gi|392659202|gb|EIY52828.1| hypothetical protein HMPREF1067_00408 [Bacteroides fragilis
CL03T12C07]
gi|392696328|gb|EIY89524.1| hypothetical protein HMPREF1079_04024 [Bacteroides fragilis
CL05T00C42]
gi|392696999|gb|EIY90186.1| hypothetical protein HMPREF1056_04193 [Bacteroides fragilis
CL07T12C05]
gi|392699527|gb|EIY92703.1| hypothetical protein HMPREF1080_03618 [Bacteroides fragilis
CL05T12C13]
gi|404581673|gb|EKA86369.1| hypothetical protein HMPREF1204_01225 [Bacteroides fragilis HMW
615]
Length = 224
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------TLITSAFSHIDVE 179
LII N +F+ +F+A ++ I+L ++L LH L T F H
Sbjct: 8 LIIINVLLFL------AQFVAQSYGINLSDYLG--LHFFLADNFNPAQLFTYMFMHGGFT 59
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-----YLVYHAFLAM-SSKRQ 233
HI NM ++ FG + + GP+ L Y+ +G + Y+ Y L+ +S
Sbjct: 60 HIFFNMFAVWMFGRILEQVWGPKRFLFYYILCGVGAGLLQEGVQYIQYVTELSQYTSVNI 119
Query: 234 GMWVVDPSR----TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
G ++ S +GASGAV AI+L L P L F F +P P F+IG
Sbjct: 120 GTGIIPMSEYLNMMTTVGASGAVYAILLAFGMLFPNQQL-FIFPLPFPI-KAKFFVIGYA 177
Query: 290 MLRIIEGNSNISGS-----AHLGGAA---VAALAWARIRRR 322
++ + G +N G AHLGG + + W + R
Sbjct: 178 LIELYAGFANNPGDNVAHFAHLGGMIFGFILIMYWRKKNRN 218
>gi|395212597|ref|ZP_10399870.1| rhomboid family protein [Pontibacter sp. BAB1700]
gi|394457114|gb|EJF11307.1| rhomboid family protein [Pontibacter sp. BAB1700]
Length = 305
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+I+ F+H HI+ NM+ LY+FG I LG + LL LY+ G I G + Y++ + +
Sbjct: 70 TIISYFFTHEGFLHIIFNMLNLYWFGQLIREYLGEKKLLSLYILGGIAGGLLYILSYNLI 129
Query: 227 AMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLI 286
+ R V+ +GAS +V A+++ L P T PV + FL+
Sbjct: 130 PYFADRAAYAVM-------IGASASVLAVVVAAATLIPNYTFNLLIIGPVRIKYIAAFLV 182
Query: 287 GKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
+ I N+ AHLGGA L +++R
Sbjct: 183 ILSISGAIGDNAG-GNIAHLGGALFGWLFIKQLQR 216
>gi|300025024|ref|YP_003757635.1| rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299526845|gb|ADJ25314.1| Rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 219
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMAN-NFTIS-LDNFLSGRLHTLITSAFSHIDVEHIVS 183
V YGLI N VF+L A +F+ + +F S ++ +G L TL+T+ F H H+
Sbjct: 17 VTYGLIAINVLVFLLELNAGDQFIQDWSFIPSRFNDDPAGNLPTLLTAMFMHGGWMHLFG 76
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ LY FG +I G L Y+A I ++ +V S
Sbjct: 77 NMLYLYIFGDNIEDRFGHVRFLAFYLACGI---------------AATFAQYYVNSGSSI 121
Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFF-----IPVPAFLLGVFLIGKDMLRIIEGNS 298
P +GASGA+ ++ I L P A + D F + +PA + F I + + +
Sbjct: 122 PNVGASGAIAGVLGAYILLFPHARV--DVFVIRQIVSLPALAVIGFWIVLQLFSSVGSIA 179
Query: 299 NISGSAHLGGAAVAA 313
+A +GG A A
Sbjct: 180 RTDETADVGGVAYMA 194
>gi|254478647|ref|ZP_05092019.1| peptidase, S54 (rhomboid) family [Carboxydibrachium pacificum DSM
12653]
gi|214035423|gb|EEB76125.1| peptidase, S54 (rhomboid) family [Carboxydibrachium pacificum DSM
12653]
Length = 227
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 30/174 (17%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
IS F L+ ITS F H ++ H++SNM L+ FG ++ +G L Y+
Sbjct: 54 TKLVISGVPFSGSDLYPFITSMFLHGNIFHLISNMWILWLFGDNVEDRMGHIRFLIFYIL 113
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA---T 267
+ VF+LV++ S P +GASGA+ +M L P A T
Sbjct: 114 SGVIAGVFHLVFNPI---------------SPVPVVGASGAIAGVMGAYFVLFPSARIIT 158
Query: 268 LYFDF-----FIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316
L F F+P+PA V+L + ++ G + +GG V +AW
Sbjct: 159 LVPSFFLVPVFLPIPAV---VYLFLWFLTQLYSGTVY----SVIGGTTVGGIAW 205
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,070,030,348
Number of Sequences: 23463169
Number of extensions: 209686072
Number of successful extensions: 673502
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 2026
Number of HSP's that attempted gapping in prelim test: 668471
Number of HSP's gapped (non-prelim): 4145
length of query: 324
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 182
effective length of database: 9,027,425,369
effective search space: 1642991417158
effective search space used: 1642991417158
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 77 (34.3 bits)