BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020597
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 201 PEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGA 251
P Y + +G S Y +YH F++ S Q W + SR P++ +GA
Sbjct: 89 PVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAW--ETSRNPSISLTGA 137
>pdb|3MV7|D Chain D, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|D Chain D, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|D Chain D, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
Length = 200
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
S ++ + VS + GL+++ G+ GPE+L LY AG
Sbjct: 17 SSLNCSYTVSGLRGLFWYRQDPGK--GPEFLFTLYSAG 52
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSH 175
RQY ++ GL +T F+ + +P + + N +SLD + G ++ +
Sbjct: 9 RQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS----- 63
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTL---GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
+I IG + +G+ L P + Y+ GA+G +++ +
Sbjct: 64 ----YIPPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGALGVQDYFI---------GEP 110
Query: 233 QGMWVVDPSRTP------ALGASGAVNAIMLLDI 260
+G + VDPSR P ALG +G LLD+
Sbjct: 111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDV 144
>pdb|4EI8|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Apo-Form
Length = 389
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 116 SWLRQYGSSEVVYG--LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITS 171
S +R ++ +G ++I N ++ + +P +AN +T + +++ LH L+TS
Sbjct: 165 SRIRSIAXNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTS 224
Query: 172 AFS 174
+F+
Sbjct: 225 SFT 227
>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From
Haemophilus Influenzae
pdb|3ODJ|A Chain A, Crystal Structure Of H. Influenzae Rhomboid Glpg With
Disordered Loop 4, Helix 5 And Loop 5
Length = 196
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIGGSV 217
I+ H+ HI+ N+ + FG I RT G LL LY +A AI G V
Sbjct: 54 ISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYV 103
>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
Length = 389
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 116 SWLRQYGSSEVVYG--LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITS 171
S +R ++ +G ++I N ++ + +P +AN +T + +++ LH L+TS
Sbjct: 165 SRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTS 224
Query: 172 AFS 174
+F+
Sbjct: 225 SFT 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,560,139
Number of Sequences: 62578
Number of extensions: 332682
Number of successful extensions: 785
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 8
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)