BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020597
         (324 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
          Length = 346

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
            +VY L+  N AVF LW++         + +   ++++ ++ ++I SAFSH +  H+  N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202

Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
           M+ L+ FG S+   LG      LYM  AI GS+F L Y     ++       +V PS   
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252

Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
            LGASGA+  ++    +L P A +   F  PVP      FL  +  +         +   
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310

Query: 303 SAHLGGAAVAAL 314
           +AHLGG+ +  L
Sbjct: 311 AAHLGGSMMGVL 322


>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
           taurus GN=PARL PE=2 SV=1
          Length = 377

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337


>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
           OS=Rattus norvegicus GN=Parl PE=2 SV=1
          Length = 377

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+PV  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337


>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
           OS=Danio rerio GN=parl PE=2 SV=1
          Length = 383

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
           + V G+I  NT V   WR+ A  +F+   FT +  +    R   ++ S+FSH  V H+V 
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225

Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
           NM  L+ F  SI   LG E  L LY++G +  +    V+      ++ R G         
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKT----ATGRLG--------- 272

Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGKDMLRIIEGNSNI 300
           P+LGASG++  ++       P+A L     +PV +F  G     L+  D+  ++ G    
Sbjct: 273 PSLGASGSIMTVLAAVCTKIPEAKLGI-VLLPVISFSAGNALKALVALDIAGLVLGWRFF 331

Query: 301 SGSAHLGGA 309
             +AHLGGA
Sbjct: 332 DHAAHLGGA 340


>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
           musculus GN=Parl PE=1 SV=1
          Length = 377

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+PV  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337


>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
           OS=Pongo abelii GN=PARL PE=2 SV=1
          Length = 379

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339


>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
           sapiens GN=PARL PE=1 SV=2
          Length = 379

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339


>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1
          Length = 298

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 30/207 (14%)

Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNF--TISLDNFLSGRLHTLITSAFS 174
           + Q  S  +V  +I  N  VF LWR   P+F   N F    ++ N +   + ++I SAFS
Sbjct: 71  IPQTSSRSLVLSIIGINVGVFALWR--APRFSHLNRFLQKYAVMNPIFINMPSMIVSAFS 128

Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
           H    H++ NM+  Y F  +I    G    +  Y++  +  +V  L++H  L   +K   
Sbjct: 129 HQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHR-LRFGTK--- 184

Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGVFLIGK---D 289
              V P    +LGASGA+ AI     +  P A++   F  FIP+    +GV L+G    D
Sbjct: 185 ---VTPG---SLGASGAIYAIAAATSYFFPNASVSIIFLPFIPIK---IGVALLGLMAFD 235

Query: 290 MLRII-EGNSN------ISGSAHLGGA 309
              +I  G S+      I  +AHLGG 
Sbjct: 236 AWGLISRGFSSFANFTLIDHAAHLGGG 262


>sp|Q2PP52|RHBL6_TOXGO Rhomboid-like protease 6 OS=Toxoplasma gondii GN=ROM6 PE=2 SV=1
          Length = 531

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 90/237 (37%), Gaps = 60/237 (25%)

Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
           Y   +++   ++ N AVF  WR+A          F+  +F +  +N    R++T +TS+ 
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLARARIYTFVTSSL 361

Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
           SH    H++ N+  +      +   L       L+   A+ G + +L+            
Sbjct: 362 SHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAALCGGLGHLLV----------- 410

Query: 234 GMWVVDPSRTPALGASG--------------------------AVNAIMLLDIFLNPKAT 267
                  SR P LGAS                            + A+ L+ + +  +A 
Sbjct: 411 -------SRQPVLGASAFAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAA 463

Query: 268 LYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL-AWARIRRRG 323
           +    F+  PAFL         +LR  +G   IS S HLGG A   L +W + R  G
Sbjct: 464 MA---FLARPAFL--ARFPASRLLRFAQG---ISWSGHLGGLAAGCLYSWYKRRVEG 512


>sp|Q9P7D8|YOFA_SCHPO Uncharacterized rhomboid protein P4H10.10, mitochondrial
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPBP4H10.10 PE=3 SV=1
          Length = 392

 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 130 LIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
           + + N  VF  W +A             +FM  +   SL N   GR  TL+ S FSH ++
Sbjct: 123 VCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQASLFNLYEGRWWTLVVSIFSHQNL 182

Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
            H++ N + +Y F   +    G    L +Y+   + G+
Sbjct: 183 AHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGN 220


>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
          Length = 281

 Score = 35.8 bits (81), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 30/156 (19%)

Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
           H +  H+  N + L+  G+   R  G   LL +Y+   IG ++F   +  +   +S    
Sbjct: 78  HSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSD--- 134

Query: 235 MWVVDPSR--TPALGASGAV------NAIMLLDIFLNPKATLYFDFFIPVPAFLLG---- 282
           +W  D +   T  +GASGA+      + I L+ + +N           P P  ++     
Sbjct: 135 LWT-DSTVYITIGVGASGAIMGIAAASVIYLIKVVINK----------PNPHPVIQRRQK 183

Query: 283 ---VFLIGKDMLRIIEG-NSNISGSAHLGGAAVAAL 314
                LI    L +I G  S +  +AH+GGA + AL
Sbjct: 184 YQLYNLIAMIALTLINGLQSGVDNAAHIGGAIIGAL 219


>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
           PE=1 SV=2
          Length = 507

 Score = 35.4 bits (80), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 18/85 (21%)

Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
           L+T    HI + H+  N + L+  G ++ R  G    L +Y+A  I GS+   V+  +  
Sbjct: 225 LLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPY-- 282

Query: 228 MSSKRQGMWVVDPSRTPALGASGAV 252
                           P+ GASGA+
Sbjct: 283 ----------------PSAGASGAI 291


>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
          Length = 404

 Score = 32.7 bits (73), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 22/125 (17%)

Query: 142 RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
           ++  P+++ N+        L  ++   +T  F H  +EH+  N++     G+ +    G 
Sbjct: 190 QVTHPRYLKNSLVYHPQ--LRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGA 247

Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM---LL 258
             +  +Y+AG + GS         LA+S        V     P +G+SG V A++   L 
Sbjct: 248 TRIGLVYVAGVVAGS---------LAVS--------VADMTAPVVGSSGGVYALVSAHLA 290

Query: 259 DIFLN 263
           +I +N
Sbjct: 291 NIVMN 295


>sp|Q9T6H8|CCF1_ARATH Putative cytochrome c biogenesis ccmF N-terminal-like mitochondrial
           protein OS=Arabidopsis thaliana GN=CCMFN1 PE=1 SV=3
          Length = 382

 Score = 32.3 bits (72), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 55  RSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRW 114
           R +Q   LK    L+ P + R    S L S+ R   FDG  LF+   +PER   +    W
Sbjct: 136 RYEQESGLKNQ--LYTPFVLRTLVDSELCSR-RNRTFDGPALFYAPLYPERKIKNPLDAW 192

Query: 115 R 115
           R
Sbjct: 193 R 193


>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
           GN=ydcA PE=3 SV=1
          Length = 199

 Score = 32.0 bits (71), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
           +G    LIT    H    H++ N + ++ F  ++ R LG    L +Y    I G++    
Sbjct: 55  NGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNI---- 110

Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGASGAV 252
                       G +V +P     +GASGA+
Sbjct: 111 ------------GTYVTEPLDYVHVGASGAI 129


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,654,315
Number of Sequences: 539616
Number of extensions: 4691114
Number of successful extensions: 13977
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13943
Number of HSP's gapped (non-prelim): 25
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)