Query 020597
Match_columns 324
No_of_seqs 245 out of 1464
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 99.9 2.4E-26 5.3E-31 213.7 -3.9 185 115-321 44-240 (278)
2 PRK10907 intramembrane serine 99.9 9.2E-26 2E-30 210.1 -1.7 176 123-319 93-268 (276)
3 COG0705 Membrane associated se 99.9 2.6E-24 5.7E-29 195.6 -2.2 184 123-321 16-211 (228)
4 KOG2980 Integral membrane prot 99.9 2.5E-22 5.5E-27 184.7 5.3 248 54-324 47-308 (310)
5 PF01694 Rhomboid: Rhomboid fa 99.8 1.6E-21 3.5E-26 164.2 0.4 143 161-323 2-144 (145)
6 KOG2632 Rhomboid family protei 99.7 4.2E-19 9.1E-24 161.0 -1.5 179 123-317 14-194 (258)
7 KOG2289 Rhomboid family protei 99.7 8.7E-19 1.9E-23 164.7 -1.8 138 159-319 113-252 (316)
8 KOG2290 Rhomboid family protei 99.2 1.4E-12 3E-17 125.7 0.8 134 162-317 448-581 (652)
9 PF04511 DER1: Der1-like famil 99.2 2.1E-12 4.7E-17 115.2 -0.9 174 123-318 1-179 (197)
10 KOG0858 Predicted membrane pro 99.1 1.4E-11 3E-16 110.8 -0.6 172 114-317 5-183 (239)
11 PF08551 DUF1751: Eukaryotic i 98.6 1.2E-08 2.5E-13 81.3 1.2 91 164-259 7-97 (99)
12 KOG2890 Predicted membrane pro 98.1 1.1E-06 2.3E-11 81.9 2.1 153 164-321 66-219 (326)
13 COG5291 Predicted membrane pro 98.0 3.7E-07 8.1E-12 82.4 -3.2 170 123-314 19-200 (313)
14 KOG4463 Uncharacterized conser 88.9 0.12 2.6E-06 47.8 -0.0 102 153-265 37-140 (323)
15 PTZ00382 Variant-specific surf 31.1 17 0.00037 28.6 0.2 18 306-323 78-95 (96)
16 PF08031 BBE: Berberine and be 22.5 36 0.00079 22.9 0.5 21 2-22 25-45 (47)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.91 E-value=2.4e-26 Score=213.72 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=132.9
Q ss_pred HHHHhhhCCCCeEEeeeeeccceeeeehccCc--------cccccceeEeeccccccchhhhhhhcccccchhHHHhhhh
Q 020597 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADP--------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186 (324)
Q Consensus 115 ~~w~~~~~~~~vt~~li~inv~vfll~~~~~~--------~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~ 186 (324)
+.-++++..+.++..++++++++|++....++ +.+.+..+..+..+.++|+||++|+.|+|.++.|+++||+
T Consensus 44 er~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~ 123 (278)
T PTZ00101 44 NLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVF 123 (278)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHH
Confidence 44567778889999999999999987554221 1233344567777788999999999999999999999999
Q ss_pred hhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhc---C
Q 020597 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL---N 263 (324)
Q Consensus 187 ~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~---~ 263 (324)
.++.+|..+|+.+|+.|++.+|+++|++|++++.... +...++||||+++|+++++... .
T Consensus 124 ~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~-----------------~~~~svGASgAifGLiGa~~~~lil~ 186 (278)
T PTZ00101 124 FQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVT-----------------YCPIKVGASTSGMGLLGIVTSELILL 186 (278)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHc-----------------cCCcEEehhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876542 1245799999999999987532 1
Q ss_pred CceeEEEEeeechhhHHHhHhhccccee-eeecCCCCcccccccchHHHHHHHHHHHhh
Q 020597 264 PKATLYFDFFIPVPAFLLGVFLIGKDML-RIIEGNSNISGSAHLGGAAVAALAWARIRR 321 (324)
Q Consensus 264 p~~~~~l~~~i~ip~~~l~~~~l~~~l~-~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~ 321 (324)
..... .+.........++.+.+. ......+++|+.||+||+++|++++..+.+
T Consensus 187 w~~~~-----~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~ 240 (278)
T PTZ00101 187 WHVIR-----HRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS 240 (278)
T ss_pred HHhhc-----cHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 11000 010000000011111111 111124789999999999999998876654
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.90 E-value=9.2e-26 Score=210.11 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=126.2
Q ss_pred CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~ 202 (324)
..|+|..++++|++||++..+........+.....+....+|+||++|++|+|.|+.|+++||+++|.+|..+|+.+|+.
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~ 172 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG 172 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 56789999999999999876654333333333333334578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHh
Q 020597 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282 (324)
Q Consensus 203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~ 282 (324)
+++.+|+++++++++.+.... ....+|+||++||++++......+.+..- ..+|.+...+.
T Consensus 173 ~~l~l~l~s~i~~~~~~~~~~------------------~~~~gGaSGvVygL~g~~~~~~~~~p~~~-~~lp~~~~~f~ 233 (276)
T PRK10907 173 KLIVITLISALLSGWVQSKFS------------------GPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLPRGLIAFA 233 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHc------------------cchhhHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHHHH
Confidence 999999999999998865531 13468999999999998655432211110 11233333222
Q ss_pred HhhcccceeeeecCCCCcccccccchHHHHHHHHHHH
Q 020597 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 319 (324)
Q Consensus 283 ~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~ 319 (324)
++.+....... ..++|++.||++|+++|++++...
T Consensus 234 llwl~~g~~~~--~g~~Ian~AHlgGli~Gll~g~~~ 268 (276)
T PRK10907 234 LLWLVAGYFDL--FGMSIANAAHVAGLAVGLAMAFWD 268 (276)
T ss_pred HHHHHHHHHHc--cCcccHHHHHHHHHHHHHHHHHHh
Confidence 22222212211 135799999999999999887644
No 3
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.87 E-value=2.6e-24 Score=195.58 Aligned_cols=184 Identities=28% Similarity=0.399 Sum_probs=139.9
Q ss_pred CCCeEEeeeeeccceeeeehccCccccc------cceeEeeccccc--c--chhhhhhhcccccchhHHHhhhhhhhhhc
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMA------NNFTISLDNFLS--G--RLHTLITSAFSHIDVEHIVSNMIGLYFFG 192 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~------~~f~l~p~~i~~--g--q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG 192 (324)
.++.+..++++|+++|+........... ..+...|..... + |+||++|++|+|.++.|+++||+.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4567788999999999876554322111 123334433321 1 89999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEe
Q 020597 193 MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF 272 (324)
Q Consensus 193 ~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~ 272 (324)
..+|+.+|+.+|+.+|+++++++++.+..... ....+.+||||+++|++++++...|..+.....
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~---------------~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~ 160 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP---------------KGGAPSLGASGAIFGLLGAYFLLFPFARILLLF 160 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc---------------cccCcccchhHHHHHHHHHHHHHccccchhhhh
Confidence 99999999999999999999999998655421 112579999999999999999999998776654
Q ss_pred e-echhhHHHhHhhcccceeeeecCC-CCcccccccchHHHHHHHHHHHhh
Q 020597 273 F-IPVPAFLLGVFLIGKDMLRIIEGN-SNISGSAHLGGAAVAALAWARIRR 321 (324)
Q Consensus 273 ~-i~ip~~~l~~~~l~~~l~~~~~~~-~~vs~~aHLgG~l~G~l~~~~~r~ 321 (324)
. ++.++..+..+.+..+++....+. ++|++.||++|+++|.+++....+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~ 211 (228)
T COG0705 161 LSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR 211 (228)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 566666555555555555433322 368999999999999998876654
No 4
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-22 Score=184.72 Aligned_cols=248 Identities=31% Similarity=0.475 Sum_probs=186.6
Q ss_pred ccccccccccchhhhhhhHHHHHHHHHHhHHH-HhhhhcCceEEEEEeccccchhh------hhhhhHHHHHhhhCCCCe
Q 020597 54 WRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQ-LRKSFFDGKVLFFRAQFPERSFA------SFRYRWRSWLRQYGSSEV 126 (324)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~w~~~~~~~~v 126 (324)
-++...++.+++++|.. .+++...+ +..+..|.+.+|+-+..|..+.+ .+++.++.|.+..+ .+
T Consensus 47 ~p~~~~r~~~~~g~fa~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~f~~F~~~~~k~w~~~~~--g~ 117 (310)
T KOG2980|consen 47 PPSVVSRSAKTHGFFAS-------ALGNTNLKLKFGNLVESRVGFFGSLLPSHGFEFGGFTGFQKRGWKHWISGAN--GV 117 (310)
T ss_pred CcccccccccCcceeec-------cchhhHHHHHhccccceeeEeecccCchhccccCCcccceecchHHHhhcCC--cc
Confidence 36788888888888833 33444443 44577889999998888765433 44666778877733 48
Q ss_pred EEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhcc-ccccccChHHHH
Q 020597 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGM-SIGRTLGPEYLL 205 (324)
Q Consensus 127 t~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~-~lE~~~G~~~fl 205 (324)
+++++++|+++|.+|++...+.+...+.++... ..--+|.+++|.|.|.+.+|+..||+.++.+.. .+....|...+.
T Consensus 118 v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~-~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~ 196 (310)
T KOG2980|consen 118 VFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNA-YKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFF 196 (310)
T ss_pred hhHHHHHHHHHHHHHHhcchhhhhhhHHhhccc-ccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcc
Confidence 999999999999999998654433333333222 223577899999999999999999999999988 888899999999
Q ss_pred HHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH--HhH
Q 020597 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGV 283 (324)
Q Consensus 206 ~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~--l~~ 283 (324)
++|+.++..+........ .. ..+..+.+||||+++++.++++.++|+.+.++.++.++|... ..-
T Consensus 197 AlylSa~~~~~~i~~~~~-v~------------~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~ 263 (310)
T KOG2980|consen 197 ALYLSAGVKGLFISVKDK-VP------------TSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFK 263 (310)
T ss_pred cceeccccccceeEeecc-cc------------ccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHH
Confidence 999966666655443321 10 124567899999999999999999999999999999988742 223
Q ss_pred hhcccceeeeecCCCCcccccccchHHHHHHH----HHHHhhcCC
Q 020597 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALA----WARIRRRGF 324 (324)
Q Consensus 284 ~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~----~~~~r~gRf 324 (324)
+++.+++..+..++.+.++.||++|.+.|..+ +..++|||+
T Consensus 264 ~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kgR~ 308 (310)
T KOG2980|consen 264 AIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRKGRF 308 (310)
T ss_pred HHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHcCcc
Confidence 55667777777778888999999999998765 457788885
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.82 E-value=1.6e-21 Score=164.19 Aligned_cols=143 Identities=31% Similarity=0.466 Sum_probs=102.6
Q ss_pred cccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCC
Q 020597 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240 (324)
Q Consensus 161 ~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~ 240 (324)
.++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|+++++++++...+...
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~---------------- 65 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP---------------- 65 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc----------------
Confidence 4689999999999999999999999999999999999999999999999999999988766531
Q ss_pred CCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHh
Q 020597 241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIR 320 (324)
Q Consensus 241 ~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r 320 (324)
...+.+|+||+++|++++.....|+.+..... +..........+...+.... .+++++.+|++|+++|++++..++
T Consensus 66 ~~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~hl~G~~~G~~~~~~~~ 141 (145)
T PF01694_consen 66 PNQPYVGASGAVFGLLGAFLFLYPQNKKRLRF--IYLALVVPIIVLVIILLLGF--IPNISFLGHLGGFLAGLLYGFLIL 141 (145)
T ss_dssp S-----SSHHHHHHHHHHHHHHHHCCCCCS-----HCCCCCCCCCCCHHHCTSS--SSTTTHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCcccchHHHHHHHHHHhhccchhhc--chHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 12268999999999999999888776543321 11111111111111111111 578899999999999999999988
Q ss_pred hcC
Q 020597 321 RRG 323 (324)
Q Consensus 321 ~gR 323 (324)
|+|
T Consensus 142 ~~~ 144 (145)
T PF01694_consen 142 RRP 144 (145)
T ss_dssp H--
T ss_pred Hcc
Confidence 875
No 6
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.72 E-value=4.2e-19 Score=161.02 Aligned_cols=179 Identities=19% Similarity=0.199 Sum_probs=144.1
Q ss_pred CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccC-h
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-P 201 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G-~ 201 (324)
.|..|..++.++.++|+....... .+.+.+..+.+.+.|+||++||+++|.+..|+++||+.+|.+|...|+..| +
T Consensus 14 ~p~~ts~~~~~~~~i~lv~~~~~i---~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t 90 (258)
T KOG2632|consen 14 IPLLTSIVVVLAILIYLVSFFPGI---VEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTT 90 (258)
T ss_pred chHHHHHHHHHHHHHHHHhccchh---hhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccce
Confidence 556677777777777765444332 244566777788899999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeC-CCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH
Q 020597 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD-PSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL 280 (324)
Q Consensus 202 ~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~-~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~ 280 (324)
.+++.+..+.++..++++++....... .| -++..++|.||+.+++++......|..+...++...+|+++
T Consensus 91 ~~~l~~~~llalf~gIl~ll~~~~~~~---------~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l 161 (258)
T KOG2632|consen 91 VRILMFTVLLALFSGILYLLAYHVFLL---------SDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVL 161 (258)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHhh---------cchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHH
Confidence 888888889999999998887642221 11 13445899999999999999999999887777788899998
Q ss_pred HhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597 281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317 (324)
Q Consensus 281 l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~ 317 (324)
.+++.++...+. .|+.|+.+|++|+++|+.|.+
T Consensus 162 ~Pw~lLi~~~~l----vp~aSFlghl~GllvG~ay~~ 194 (258)
T KOG2632|consen 162 APWALLIATQIL----VPQASFLGHLCGLLVGYAYAF 194 (258)
T ss_pred HHHHHHHHHHHH----ccCchHHHHHHHHHHHHHHHH
Confidence 888766655443 378999999999999999877
No 7
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.70 E-value=8.7e-19 Score=164.75 Aligned_cols=138 Identities=22% Similarity=0.303 Sum_probs=101.9
Q ss_pred cccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeee
Q 020597 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238 (324)
Q Consensus 159 ~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~ 238 (324)
....+|+||++|++|+|.++.|+++||+.+..+|..+|+..|..|+..+|++++++|++++.+..
T Consensus 113 ~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d--------------- 177 (316)
T KOG2289|consen 113 PVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFD--------------- 177 (316)
T ss_pred hhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhc---------------
Confidence 44668999999999999999999999999999999999999999999999999999999988752
Q ss_pred CCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH--HhHhhcccceeeeecCCCCcccccccchHHHHHHHH
Q 020597 239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 316 (324)
Q Consensus 239 ~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~--l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~ 316 (324)
++..++||||++||++++...---...... --+..+.. +.++.+.+++- ..+.++..+|+||.+.|..++
T Consensus 178 --~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m--~~~~~~l~~ll~Ii~i~l~~G----~~~~~~~~~h~gg~~~G~~~~ 249 (316)
T KOG2289|consen 178 --PNSISVGASGGVFALLGAHLSNLLTNWTIM--KNKFAALRTLLIIIFINLDLG----FAPYVDNFAHIGGLLAGFLLG 249 (316)
T ss_pred --cCCceecccHHHHHHHHHHHHHHHhhHHHh--cchHHHHHHHHHHHHHHHhhc----cccceeccccccccCCCcchh
Confidence 467799999999999998864321111100 00111111 11122222222 135678899999999888776
Q ss_pred HHH
Q 020597 317 ARI 319 (324)
Q Consensus 317 ~~~ 319 (324)
+..
T Consensus 250 fil 252 (316)
T KOG2289|consen 250 FVL 252 (316)
T ss_pred HHh
Confidence 644
No 8
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-12 Score=125.75 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=101.3
Q ss_pred ccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCC
Q 020597 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241 (324)
Q Consensus 162 ~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~ 241 (324)
+.|.||++||.|+|.++.|++..|...+.+-+-+|+..|..|...+|+++|+.|++++.++. +
T Consensus 448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFl-----------------p 510 (652)
T KOG2290|consen 448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFL-----------------P 510 (652)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeee-----------------c
Confidence 36999999999999999999999999999999999999999999999999999999987753 3
Q ss_pred CCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597 242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317 (324)
Q Consensus 242 ~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~ 317 (324)
+.+.+|.||+-+|+++...+-..+.+..+ .-|...+.=++....++.+ ...|.||++||+.|.++|++...
T Consensus 511 Y~~eVgPa~sQ~Gila~l~vEl~qs~~il----~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~ 581 (652)
T KOG2290|consen 511 YRAEVGPAGSQFGILACLFVELFQSWQIL----ERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSI 581 (652)
T ss_pred cccccCCcccccchHHHHHHHHHhhhHhh----hhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHH
Confidence 56789999999999988876544443322 2232211100000001111 12478999999999999987544
No 9
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=99.19 E-value=2.1e-12 Score=115.22 Aligned_cols=174 Identities=20% Similarity=0.110 Sum_probs=126.2
Q ss_pred CCCeEEeeeeeccceeeeehccCccccccceeEeeccc-cccchhhhhhhcccccch-hHHHhhhhhhhhhcccccccc-
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHIDV-EHIVSNMIGLYFFGMSIGRTL- 199 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i-~~gq~WrLlTs~F~H~~~-~HLl~Nm~~L~~fG~~lE~~~- 199 (324)
.||+|+.+++..+++.++....--+ ..+..++++.+ .+.|+||++|+.|.-++. .+.++|++.++..++.+|+..
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~--~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f 78 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIIS--PYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHF 78 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCC--HHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCC
Confidence 3678888777777777665443111 12334666665 468999999999998777 899999999999999999983
Q ss_pred -Ch-HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechh
Q 020597 200 -GP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP 277 (324)
Q Consensus 200 -G~-~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip 277 (324)
++ ..|+.+.+.+++.-.++..+.... ..+.+.+ .++.+..++..++..+|+.++.+++++++|
T Consensus 79 ~~~~ady~~~ll~~~~~i~~~~~~~~~~--------------~~~~~~l-~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~ 143 (197)
T PF04511_consen 79 QGRSADYLWFLLFGASLILILSLLIGPY--------------FFNIPFL-GSSLSFALTYIWSRKNPNAQVSFFGLFTIK 143 (197)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhccc--------------hhHHHHH-HHHHHHHHHHHHHHhCcccceeeEEEEEEC
Confidence 33 567777666555544444332100 0011123 355788888999999999999999999999
Q ss_pred hHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHH
Q 020597 278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 318 (324)
Q Consensus 278 ~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~ 318 (324)
+++++++.++++++.. +-+...++.|+++|++|+.+
T Consensus 144 a~ylP~~~~~~~~l~~-----~~~~~~~l~Gi~~Ghly~fl 179 (197)
T PF04511_consen 144 AKYLPWVLLAFSLLFG-----GSSPIPDLLGILVGHLYYFL 179 (197)
T ss_pred hhhHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHH
Confidence 9999999888887652 22567999999999999875
No 10
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=99.08 E-value=1.4e-11 Score=110.83 Aligned_cols=172 Identities=18% Similarity=0.081 Sum_probs=131.7
Q ss_pred HHHHHhhhCCCCeEEeeeeeccceeeeehcc--CccccccceeEeeccc-cccchhhhhhhcccccc-hhHHHhhhhhhh
Q 020597 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNF-LSGRLHTLITSAFSHID-VEHIVSNMIGLY 189 (324)
Q Consensus 114 ~~~w~~~~~~~~vt~~li~inv~vfll~~~~--~~~~~~~~f~l~p~~i-~~gq~WrLlTs~F~H~~-~~HLl~Nm~~L~ 189 (324)
...|+.+ .|++|+....+|+++-++-.+. ++. +..++|+.+ .+.|+||++|+.+.-+. -+|.++||+.++
T Consensus 5 l~~~~~~--iPpVTR~~~~~~v~tt~~~~l~lIsP~----~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~Fly 78 (239)
T KOG0858|consen 5 LLNFYLQ--IPPVTRYYTTACVVTTLLVRLDLISPF----QLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLY 78 (239)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHHHHhhcccCch----heEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHH
Confidence 4557777 8899999999999888775543 222 234566544 55699999999999988 499999999999
Q ss_pred hhccccccccCh---HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCce
Q 020597 190 FFGMSIGRTLGP---EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA 266 (324)
Q Consensus 190 ~fG~~lE~~~G~---~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~ 266 (324)
..++.+|+..-+ ..|+.+.+.+++.-.+..+..... .+ .++.++.+...++..+|+.
T Consensus 79 rY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~~-------------------fL-g~~l~~~l~YvWs~~Np~~ 138 (239)
T KOG0858|consen 79 RYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYIV-------------------FL-GQSLVFMLVYVWSKRNPDV 138 (239)
T ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-------------------HH-HHHHHHHHHHHHHhhCCCc
Confidence 999999986532 678887777777666554432211 12 3456778889999999999
Q ss_pred eEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597 267 TLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 317 (324)
Q Consensus 267 ~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~ 317 (324)
++.+++.+++++.++++++++++.+.- +.+ ...+-|+++|++|.+
T Consensus 139 ~v~F~g~~~f~a~YlPwvll~fs~l~g-----~~~-~~dllGi~~GHiy~f 183 (239)
T KOG0858|consen 139 IVSFFGLITFKAPYLPWVLLGFSFLFG-----GSI-LVDLLGIIVGHIYYF 183 (239)
T ss_pred eEEEEEEecCccccchHHHHHHHHHhC-----Cch-HHHHHhhhhheeEEE
Confidence 999999999999999999998887641 223 888999999988754
No 11
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.61 E-value=1.2e-08 Score=81.33 Aligned_cols=91 Identities=14% Similarity=0.242 Sum_probs=72.8
Q ss_pred chhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCC
Q 020597 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243 (324)
Q Consensus 164 q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~ 243 (324)
++|+++|+.|++.++..++.|...++..|+.+|+.||+++++.++++.++.++++..+....... ..++..++ ..
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~-i~~~~~~l----~~ 81 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYA-ITGNESYL----FV 81 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCCCcee----EE
Confidence 79999999999999999999999999999999999999999999999999988887765543322 12211111 14
Q ss_pred CCCCcccchhhhhhhh
Q 020597 244 PALGASGAVNAIMLLD 259 (324)
Q Consensus 244 ~~vGaSG~I~gll~~~ 259 (324)
+.-|..|.+.|+++++
T Consensus 82 ~i~G~~~~~~g~lVa~ 97 (99)
T PF08551_consen 82 PISGFMGVLAGFLVAF 97 (99)
T ss_pred EecCcHHhHhheEEEE
Confidence 5678888888887764
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=98.13 E-value=1.1e-06 Score=81.86 Aligned_cols=153 Identities=18% Similarity=0.083 Sum_probs=98.1
Q ss_pred chhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCC
Q 020597 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243 (324)
Q Consensus 164 q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~ 243 (324)
.+|+++|+.|+..+++-.+.|.+.|...|+.+|+.||..+++.+|.+.....+++......+ .+..+..-.++ ..
T Consensus 66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l-~Y~it~n~v~L----~~ 140 (326)
T KOG2890|consen 66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALL-LYMITDNHVYL----YI 140 (326)
T ss_pred hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHH-HHHHhcCceEE----EE
Confidence 68999999999999999999999999999999999999999999987666655554332211 11111111222 13
Q ss_pred CCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeee-cCCCCcccccccchHHHHHHHHHHHhh
Q 020597 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRR 321 (324)
Q Consensus 244 ~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~-~~~~~vs~~aHLgG~l~G~l~~~~~r~ 321 (324)
+..|..|.+.|++.++-..+|+..+...-..++..+.++...+.+.++..+ ......+...-..|..+++.|..+.++
T Consensus 141 ~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~ 219 (326)
T KOG2890|consen 141 PIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQR 219 (326)
T ss_pred EeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheeccc
Confidence 478999999999999999999986543111111111233322222221111 111223444445677777777666554
No 13
>COG5291 Predicted membrane protein [Function unknown]
Probab=98.01 E-value=3.7e-07 Score=82.40 Aligned_cols=170 Identities=15% Similarity=0.069 Sum_probs=102.8
Q ss_pred CCCeEEeeeeeccceeeeehcc--CccccccceeEeeccccccchhhhhhhcccccch-hHHHhhhhhhhhhcccccccc
Q 020597 123 SSEVVYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV-EHIVSNMIGLYFFGMSIGRTL 199 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~--~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~-~HLl~Nm~~L~~fG~~lE~~~ 199 (324)
.||+|+.+..+..++-++-.+. .+...+. ..|-.+..-|+||++|+..+-++- +.+++|.+.+|...+.+|+-.
T Consensus 19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly---~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~ 95 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLVSPWYSLY---YSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC 95 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCccceee---echhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence 6788877666555555443332 2211111 133344566999999999888876 999999999999999999853
Q ss_pred -ChH--HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeech
Q 020597 200 -GPE--YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV 276 (324)
Q Consensus 200 -G~~--~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~i 276 (324)
++. .+....+.+.+.--.++... ..+++=-+|.+..+-..+...+|+.++.+++.+++
T Consensus 96 f~~~lv~Y~~yl~~~~l~i~a~s~I~-------------------gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v 156 (313)
T COG5291 96 FNTSLVEYFWYLLVISLVIFAISNIY-------------------GGISALGTSFSATITYIWSKRNPRAIIQFFGFISV 156 (313)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHh-------------------cchhhhcchhhhheeeeeeecCCceEEEEEEeeec
Confidence 443 44433332222111111111 11222234555556666667789999999999999
Q ss_pred hhHHHhHhhcccceeeeec------CCCCcccccccchHHHHHH
Q 020597 277 PAFLLGVFLIGKDMLRIIE------GNSNISGSAHLGGAAVAAL 314 (324)
Q Consensus 277 p~~~l~~~~l~~~l~~~~~------~~~~vs~~aHLgG~l~G~l 314 (324)
|.++++.+.++++++.--. .+--+.|.-|-.|-+.|.+
T Consensus 157 ~gkYlP~Illgfsfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi 200 (313)
T COG5291 157 PGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI 200 (313)
T ss_pred chhhhhHHHHHHHHHhcCCccceeeeeeeeccccccccchhhhh
Confidence 9999999888877653210 0001345556666665543
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.12 Score=47.76 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=67.7
Q ss_pred eeEeeccccc--cchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcc
Q 020597 153 FTISLDNFLS--GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230 (324)
Q Consensus 153 f~l~p~~i~~--gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~ 230 (324)
|.++.+.+.. .|+||++.+.|.-.+-..+.+-.+.+|.+ +.+|+.+|+.+|..+.+.+++.+-+....+..+... .
T Consensus 37 f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il~~l~~~-~ 114 (323)
T KOG4463|consen 37 FGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVILLSLLKD-T 114 (323)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHHHHHHHH-H
Confidence 3444444432 49999999999999998888888877776 679999999999999888888777765543322111 0
Q ss_pred cccceeeeCCCCCCCCCcccchhhhhhhhhhcCCc
Q 020597 231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265 (324)
Q Consensus 231 ~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~ 265 (324)
.+ +.-..+.-|.+|+.+.-+-...|-
T Consensus 115 ~~---------nl~~~qp~~liFa~~~~~y~~ip~ 140 (323)
T KOG4463|consen 115 TA---------NLLTSQPYGLIFASFIPFYLDIPV 140 (323)
T ss_pred Hh---------hhhhcCCCceeeeeccceEEEecc
Confidence 11 223456666777766433333343
No 15
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=31.13 E-value=17 Score=28.58 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHHhhcC
Q 020597 306 LGGAAVAALAWARIRRRG 323 (324)
Q Consensus 306 LgG~l~G~l~~~~~r~gR 323 (324)
+.|+++|++.|++++|+|
T Consensus 78 ~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHHHHhheeEEeec
Confidence 345677888888888776
No 16
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=22.48 E-value=36 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.3
Q ss_pred ccccchHhhhhhcccccCCCc
Q 020597 2 QRLLSLKQLASKSNFLKNPTN 22 (324)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (324)
+||..+|+.=|..|+|.+|.|
T Consensus 25 ~rL~~iK~~yDP~n~F~~~q~ 45 (47)
T PF08031_consen 25 DRLRAIKRKYDPDNVFRFPQS 45 (47)
T ss_dssp HHHHHHHHHH-TT-TS-STTS
T ss_pred HHHHHHHHHhCccceeCCCCC
Confidence 589999999999999887754
Done!