Query 020597
Match_columns 324
No_of_seqs 245 out of 1464
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 6.2E-30 2.1E-34 223.9 -0.3 176 123-322 3-181 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 9.5E-30 3.3E-34 225.4 -3.6 175 123-321 8-185 (196)
3 2ks1_B Epidermal growth factor 6.8 2.8E+02 0.0097 17.6 2.2 8 316-323 32-39 (44)
4 2l2t_A Receptor tyrosine-prote 6.5 3.1E+02 0.011 17.5 2.2 8 316-323 31-38 (44)
5 2jwa_A Receptor tyrosine-prote 5.6 3.2E+02 0.011 17.4 1.9 9 315-323 31-39 (44)
6 2kxa_A Haemagglutinin HA2 chai 5.1 2.3E+02 0.0078 16.5 0.8 9 306-314 2-10 (30)
7 2k1k_A Ephrin type-A receptor 4.5 3.1E+02 0.011 16.8 1.2 8 306-313 13-20 (38)
8 2kpj_A SOS-response transcript 4.1 5.7E+02 0.019 17.7 2.7 19 7-25 51-69 (94)
9 1l1y_A Cellobiohydrolase; alph 3.4 2.5E+02 0.0087 28.0 0.1 12 17-28 51-62 (678)
10 2i15_A A05_ORF129, hypothetica 3.1 6.9E+02 0.024 18.9 2.3 19 66-84 57-75 (135)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=6.2e-30 Score=223.90 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=140.1
Q ss_pred CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~ 202 (324)
.+|+|..++++|+++|+++...+...+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~ 82 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG 82 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 56789999999999999887765444456677788777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhh---cCCceeEEEEeeechhhH
Q 020597 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF---LNPKATLYFDFFIPVPAF 279 (324)
Q Consensus 203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~---~~p~~~~~l~~~i~ip~~ 279 (324)
+++.+|+++++.+++++.+.. + ..++||||+++|++++... ..|+.+.. ++.+..
T Consensus 83 ~fl~~yl~~~i~~~l~~~~~~----------------~--~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~ 140 (181)
T 2xov_A 83 KLIVITLISALLSGYVQQKFS----------------G--PWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLI 140 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------C--SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------C--CCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHH
Confidence 999999999999999876642 1 1389999999999997754 56766542 344544
Q ss_pred HHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHhhc
Q 020597 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322 (324)
Q Consensus 280 ~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~g 322 (324)
.+..+.++.++... ..+++|+.||++|+++|++++..++|+
T Consensus 141 ~~~~~~~~~~~~~~--~~~~v~~~aHlgG~l~G~l~~~~~~~~ 181 (181)
T 2xov_A 141 IFALIWIVAGWFDL--FGMSMANGAHIAGLAVGLAMAFVDSLN 181 (181)
T ss_dssp HHHHHHHHHHHTTS--SCCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333333322 136899999999999999999888874
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=9.5e-30 Score=225.43 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=135.9
Q ss_pred CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202 (324)
Q Consensus 123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~ 202 (324)
.+++|..++++|+++|+++...+.....+++.++|+.+..+|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.
T Consensus 8 ~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~ 87 (196)
T 2nr9_A 8 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV 87 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 46789999999999999887765444456677888777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhc---CCceeEEEEeeechhhH
Q 020597 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL---NPKATLYFDFFIPVPAF 279 (324)
Q Consensus 203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~---~p~~~~~l~~~i~ip~~ 279 (324)
+++.+|+++++++++++.+.. + ..++||||+++|++++.+.. .|+. ..++.+..
T Consensus 88 ~~l~~yl~~~~~~~l~~~~~~----------------~--~~~vGaSGai~gl~g~~~~~~~~~~~~-----~~~~~~~~ 144 (196)
T 2nr9_A 88 KLLMLYVVASAITGYVQNYVS----------------G--PAFFGLSGVVYAVLGYVFIRDKLNHHL-----FDLPEGFF 144 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------C--SCCCCSHHHHHHHHHHHHHHHHSSTTS-----CCCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------C--CCeeeHHHHHHHHHHHHHHHHHhcchh-----hcchHHHH
Confidence 999999999999999876642 1 12899999999999976542 3332 12344444
Q ss_pred HHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHhh
Q 020597 280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321 (324)
Q Consensus 280 ~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~ 321 (324)
.+..+.+..++.... ..+++|+.||++|+++|++++..+++
T Consensus 145 ~~~~~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 145 TMLLVGIALGFISPL-FGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TTTTTTTTHHHHSCS-SCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333221 23589999999999999998876654
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.79 E-value=2.8e+02 Score=17.61 Aligned_cols=8 Identities=38% Similarity=0.285 Sum_probs=4.2
Q ss_pred HHHHhhcC
Q 020597 316 WARIRRRG 323 (324)
Q Consensus 316 ~~~~r~gR 323 (324)
++++||+|
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 45556553
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.47 E-value=3.1e+02 Score=17.50 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=4.2
Q ss_pred HHHHhhcC
Q 020597 316 WARIRRRG 323 (324)
Q Consensus 316 ~~~~r~gR 323 (324)
++++||+|
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 45556553
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.65 E-value=3.2e+02 Score=17.42 Aligned_cols=9 Identities=33% Similarity=0.216 Sum_probs=4.6
Q ss_pred HHHHHhhcC
Q 020597 315 AWARIRRRG 323 (324)
Q Consensus 315 ~~~~~r~gR 323 (324)
.+.++||+|
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 344556554
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=5.06 E-value=2.3e+02 Score=16.46 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=5.7
Q ss_pred cchHHHHHH
Q 020597 306 LGGAAVAAL 314 (324)
Q Consensus 306 LgG~l~G~l 314 (324)
+.|+++|++
T Consensus 2 lFGAIAGfi 10 (30)
T 2kxa_A 2 LFGAIAGFI 10 (30)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhhhh
Confidence 456677765
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=4.50 E-value=3.1e+02 Score=16.77 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=3.2
Q ss_pred cchHHHHH
Q 020597 306 LGGAAVAA 313 (324)
Q Consensus 306 LgG~l~G~ 313 (324)
+.|++.|.
T Consensus 13 IAGiVvG~ 20 (38)
T 2k1k_A 13 IVAVIFGL 20 (38)
T ss_dssp HHHHHHHH
T ss_pred eeeeehHH
Confidence 34444443
No 8
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=4.06 E-value=5.7e+02 Score=17.67 Aligned_cols=19 Identities=0% Similarity=0.134 Sum_probs=7.7
Q ss_pred hHhhhhhcccccCCCcccc
Q 020597 7 LKQLASKSNFLKNPTNFTF 25 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (324)
.+.+..+.+++.-+.+.++
T Consensus 51 ~~~l~~ia~~l~v~~~~l~ 69 (94)
T 2kpj_A 51 MGKVQALADYFNINKSDLI 69 (94)
T ss_dssp HHHHHHHHHHHTCCTHHHH
T ss_pred HHHHHHHHHHHCcCHHHHh
Confidence 3333344444433444444
No 9
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Probab=3.38 E-value=2.5e+02 Score=27.96 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=10.1
Q ss_pred ccCCCcccccCc
Q 020597 17 LKNPTNFTFSKP 28 (324)
Q Consensus 17 ~~~~~~~~~~~~ 28 (324)
.+||.|+|||||
T Consensus 51 I~dp~nGYFS~~ 62 (678)
T 1l1y_A 51 IKDPKNGYFSPD 62 (678)
T ss_dssp HHCGGGCSBCTT
T ss_pred ccCCCCCcccCC
Confidence 389999999965
No 10
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=3.15 E-value=6.9e+02 Score=18.87 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHhHH
Q 020597 66 AFLFNPLLARRFFTSLLSS 84 (324)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~ 84 (324)
+||+.||+|..+|-++-.+
T Consensus 57 ~ff~kpmlsd~ffi~sevi 75 (135)
T 2i15_A 57 SFFLKPMLSDAFFISSEVV 75 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchhhhHHHH
Confidence 8999999999999887754
Done!