BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020599
(324 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/266 (83%), Positives = 246/266 (92%)
Query: 51 VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQA 110
+CKASWQELAGV++FSAIPFTAVKAIANSPLGE LQ R+ E KK A+Q SSKFKALA++A
Sbjct: 51 ICKASWQELAGVVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKA 110
Query: 111 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
R ES WYGEERPRWLGPI Y YP+YL+GELPGDYGFDVAGL++DP+AFQ+YFNFEILHAR
Sbjct: 111 RKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHAR 170
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAML ALGAL+PEVLD+ GAFH +EPVWWRVGYSKL+G+TLDYLGIPGLH AG QGV+VI
Sbjct: 171 WAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVI 230
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
A CQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPLNLSKDPV+FEELKVKE
Sbjct: 231 AFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKE 290
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAMVAWLGFYIQAA TGKG +
Sbjct: 291 IKNGRLAMVAWLGFYIQAALTGKGPV 316
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/287 (78%), Positives = 253/287 (88%), Gaps = 1/287 (0%)
Query: 30 RKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRM 89
++I +P R + + +S +C+ASWQELAGVLVFSAIPFTAVKAIANS LGE L+ R+
Sbjct: 24 QRIYVPEPPRSRIAVT-RSRSICRASWQELAGVLVFSAIPFTAVKAIANSSLGESLRRRL 82
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
E KK A+++SS+FKA A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+A
Sbjct: 83 EEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIA 142
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GL KD + F KYFNFEILHARWAML ALGAL+PEVLD+ GAFH EPVWWRVGYSKLQGE
Sbjct: 143 GLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGE 202
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
TLDYLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 203 TLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGT 262
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
LFDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKG +
Sbjct: 263 LFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 309
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/286 (77%), Positives = 250/286 (87%), Gaps = 2/286 (0%)
Query: 31 KILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+IL KP +N + KS +C+ASWQELAGVLVFSAIPFTAVKAIANS +G L+ R+
Sbjct: 23 RILVSKP--RNRIAVTKSRSICRASWQELAGVLVFSAIPFTAVKAIANSSIGVSLRRRLE 80
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
E KK A+++SS+FK+ A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct: 81 EKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 140
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
L KD + F KYFNFEILHARWAML ALGAL+PEV D+ G FH EPVWWRVGYSKLQGET
Sbjct: 141 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGET 200
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
L+YLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 201 LEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 260
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKG +
Sbjct: 261 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 306
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/313 (76%), Positives = 265/313 (84%), Gaps = 8/313 (2%)
Query: 4 IQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVL 63
+ Q H + W+S S S S K+LALKP + +L S CKASWQELAGVL
Sbjct: 3 VLLQPHPSFSWISSSLFSQGS------KLLALKP--RKILFNGNPSSPCKASWQELAGVL 54
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
VFSAIPFTAVKA+ANSPLGE LQ R+ E+KK A+++SSKF+AL +AR ESLWYGEERPR
Sbjct: 55 VFSAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKARKESLWYGEERPR 114
Query: 124 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
WLGPIPYDYP+YLTGELPGDYGFDVAGLSKD +AFQ+YFNFEILHARWAML ALGAL PE
Sbjct: 115 WLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPE 174
Query: 184 VLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEC 243
VLD+ GAFH +EPVWWRVGYSKL+G+TLDYLGIPGLH AGSQGV+VIAICQALLMVGPE
Sbjct: 175 VLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEY 234
Query: 244 ARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
ARYCGIEALEPLGI+LPGDINYPGG LFDPLNLS D VA EELKVKEIKNGRLAMVAWLG
Sbjct: 235 ARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLG 294
Query: 304 FYIQAAFTGKGMI 316
FY QAA TGKG +
Sbjct: 295 FYAQAALTGKGPV 307
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/286 (77%), Positives = 250/286 (87%), Gaps = 4/286 (1%)
Query: 35 LKPSRKNLLLKPKSSL----VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+P L L+ S+ C+ASWQELAGVL+FSAIPFTAVKAIANSPLG LQ ++
Sbjct: 28 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLE 87
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+ K +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AG
Sbjct: 88 KKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAG 147
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G+T
Sbjct: 148 LSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDT 207
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLGIPGLHLAGSQGVIVIAICQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 208 LDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVL 267
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPLNLSKD AFEELKVKEIKNGRLAMVAWLGFY QAA TGKG +
Sbjct: 268 FDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPV 313
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/286 (77%), Positives = 250/286 (87%), Gaps = 4/286 (1%)
Query: 35 LKPSRKNLLLKPKSSL----VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+P L L+ S+ C+ASWQELAGVL+FSAIPFTAVKAIANSPLG LQ ++
Sbjct: 28 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLE 87
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+ K +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AG
Sbjct: 88 KKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAG 147
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G+T
Sbjct: 148 LSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDT 207
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLGIPGLHLAGSQGVIVIAICQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 208 LDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVL 267
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPLNLSKD AFEELKVKEIKNGRLAMVAWLGFY QAA TGKG +
Sbjct: 268 FDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPV 313
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/272 (80%), Positives = 244/272 (89%)
Query: 45 KPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFK 104
K + S ASWQELAGVL+FSAIPFTAVKAIANSPLGE LQ +M E K A+++SS FK
Sbjct: 34 KRRRSSFITASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEERKTFAVENSSTFK 93
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
ALA +AR ES WYGE+RPRWLGPI Y+YPSYLTGELPGDYGFD+AGL +DP+A QKYFNF
Sbjct: 94 ALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNF 153
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
EILHARWAML ++GAL+PE+LD++GAFH VEPVWWRVGYSKL+G+TLDYLGI GLH AGS
Sbjct: 154 EILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGS 213
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
QGV+VIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPLNLS DP AFE
Sbjct: 214 QGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFE 273
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKEIKNGRLAMVAWLGFY+QAA TGKG +
Sbjct: 274 ELKVKEIKNGRLAMVAWLGFYVQAALTGKGPV 305
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/265 (88%), Positives = 253/265 (95%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
CKASWQELAGVL+FSAIPFTAVKAIANSPLGE LQ+RM E KKAA+++SSKFKALA +A+
Sbjct: 45 CKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAK 104
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
NESLWYGEERPRWLGPIPYDYP+YLTGELPGDYGFD+AGL KDP+AFQKYFNFEILHARW
Sbjct: 105 NESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARW 164
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALGAL+PE+LD++GAFH VEPVWWRVGYSKL+G+TLDYLGIPG H AGSQGVIVIA
Sbjct: 165 AMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIA 224
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
ICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPLNLSKDPVAFEELKVKEI
Sbjct: 225 ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 284
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAMVAWLGFYIQAA TGKG +
Sbjct: 285 KNGRLAMVAWLGFYIQAAATGKGPV 309
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/283 (72%), Positives = 233/283 (82%)
Query: 34 ALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETK 93
A PS L + +S +ASWQELAGVLVFSAIPFTAVKA+ANSPLG L+ R+ + K
Sbjct: 13 AAPPSALPLRRRRRSHTPVRASWQELAGVLVFSAIPFTAVKALANSPLGARLRRRLEDRK 72
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
AA ++ +A +R ARN S WYG +RPRWLGP+PYDYP YLTGE PGDYGFD+AGL +
Sbjct: 73 AAAAAEADALRAASRGARNNSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGR 132
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP+AF YFNFEILH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDY
Sbjct: 133 DPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDY 192
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LGIPG +AG QGV+VIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDP
Sbjct: 193 LGIPGFRIAGGQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDP 252
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L LSKDPVAFE+LKVKEIKNGRLAMVAW GFYIQAA TGKG +
Sbjct: 253 LGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPV 295
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/265 (76%), Positives = 231/265 (87%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
+ASWQELAGVLVFSA+PFTAVKA+ANSPLG L+ R+ + K AA ++ ++ ARQAR
Sbjct: 37 VRASWQELAGVLVFSAVPFTAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RW
Sbjct: 97 TASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRW 156
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIA
Sbjct: 157 AMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
ICQALLMVGPE ARYCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVAFE+LKVKEI
Sbjct: 217 ICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEI 276
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAMVAWLGFYIQAA TGKG I
Sbjct: 277 KNGRLAMVAWLGFYIQAAVTGKGPI 301
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/265 (76%), Positives = 230/265 (86%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
+ASWQELAGVLVFSA+PFTAVKA+ANSPLG L+ R+ + K AA ++ ++ ARQAR
Sbjct: 37 VRASWQELAGVLVFSAVPFTAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RW
Sbjct: 97 TASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRW 156
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG +VPE+LD+ H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIA
Sbjct: 157 AMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
ICQALLMVGPE ARYCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVAFE+LKVKEI
Sbjct: 217 ICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEI 276
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAMVAWLGFYIQAA TGKG I
Sbjct: 277 KNGRLAMVAWLGFYIQAAVTGKGPI 301
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/272 (75%), Positives = 233/272 (85%)
Query: 45 KPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFK 104
+ + SL +ASWQELAGVLVFSAIPFTAVKA+ANSPLG L+ R+ + K AA ++ +
Sbjct: 23 RRRRSLSVRASWQELAGVLVFSAIPFTAVKALANSPLGARLRRRLEDRKAAAAAEADALR 82
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A AR ARN S WYG +RPRWLGP+PYDYP +LTGE PGDYGFD+AGL +DP+AF YFNF
Sbjct: 83 AAARGARNNSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNF 142
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
EILH RWAML ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG
Sbjct: 143 EILHCRWAMLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGG 202
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
QGVIVIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPVAFE
Sbjct: 203 QGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFE 262
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+LKVKEIKNGRLAMVAWLGFYIQAA TGKG +
Sbjct: 263 DLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 294
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/309 (64%), Positives = 239/309 (77%), Gaps = 8/309 (2%)
Query: 8 AHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSA 67
AH+T W S + G +++ R L + C+A+WQELAGV+VFSA
Sbjct: 26 AHSTRQWKS--KLGNPFKGAEVKQNCGSITRRNGQLPR------CRAAWQELAGVVVFSA 77
Query: 68 IPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
+PFT VKAIANS +GE LQ RML+TKKAA + + + + R+ES+WY E RP+WLGP
Sbjct: 78 LPFTLVKAIANSSIGEQLQQRMLKTKKAAQEAAGEAREAQSNVRDESMWYREGRPKWLGP 137
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
IPYDYP +L GE PGDYGFD+ GLS+DP AF++YFNFEILHARWAML ALG ++PE+LD
Sbjct: 138 IPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDR 197
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G EPVWW+VGY+KLQG+TLDYLGIPGLH+AG+QG++VIA CQ +LM+GPE ARYC
Sbjct: 198 FGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYC 257
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
GIEALEPLGIFLPGD+NYPGGALFDPL L+KD AFE+LKVKE+KNGRLAMVAWLGFY+Q
Sbjct: 258 GIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQ 317
Query: 308 AAFTGKGMI 316
A T KG I
Sbjct: 318 ALVTQKGPI 326
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/263 (73%), Positives = 218/263 (82%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
C+ASWQELAGVLVFSA PFTAVKAIANS LG+ LQ RM ETK AA S A +AR
Sbjct: 35 CRASWQELAGVLVFSAFPFTAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRAR 94
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+AGL KDP F K+FNFEILHARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG ++PEVL+ + E VWWRVGY+KL+G+TLDYLGIPGLH+ G+QG+IVIA
Sbjct: 155 AMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIA 214
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
ICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPL LSKDP FEELKVKEI
Sbjct: 215 ICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEI 274
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAMVAWLGFY+QA T KG
Sbjct: 275 KNGRLAMVAWLGFYVQALVTKKG 297
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/263 (73%), Positives = 217/263 (82%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
C+ASWQELAGVLVFSA PFTAVKAIANS LG+ LQ RM ETK AA S A +AR
Sbjct: 35 CRASWQELAGVLVFSAFPFTAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRAR 94
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+AGL KDP F K+FNFEILHARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG ++PEVL+ E VWWRVGY+KL+G+TLDYLGIPGLH+ G+QG++VIA
Sbjct: 155 AMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIA 214
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
ICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPL LSKDP FEELKVKEI
Sbjct: 215 ICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEI 274
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAMVAWLGFY+QA T KG
Sbjct: 275 KNGRLAMVAWLGFYVQALVTKKG 297
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/264 (76%), Positives = 228/264 (86%)
Query: 53 KASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARN 112
+ASWQELAGVLVFSA+PFTAVKA+A SPLG LL+ R+ + K +A ++ +A ARQAR+
Sbjct: 35 RASWQELAGVLVFSAVPFTAVKALAGSPLGALLRRRLEDRKASAAAEADALRAAARQARS 94
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S W+GE RPRWLGPIPYDYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWA
Sbjct: 95 SSFWFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 154
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGI GL +AG QGVIVIAI
Sbjct: 155 MLAALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAI 214
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPV FEELKVKEIK
Sbjct: 215 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIK 274
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAMVAWLGFY+QAA TGKG +
Sbjct: 275 NGRLAMVAWLGFYLQAAVTGKGPV 298
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/270 (73%), Positives = 227/270 (84%)
Query: 47 KSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKAL 106
+ S+ +ASWQELAGVLVFSA+PFTAVKAIANSPLG L+ R+ K +A ++ +A
Sbjct: 21 RKSMRVRASWQELAGVLVFSAVPFTAVKAIANSPLGASLRRRLESRKASAAAEADALRAA 80
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
AR+AR+ S WYG RPRWLGP+ YDYP +L GE PGDYGFD+AGL +DP+AF YFNFEI
Sbjct: 81 AREARSSSFWYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEI 140
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
LH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QG
Sbjct: 141 LHCRWAMLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQG 200
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+IVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPVAFEE
Sbjct: 201 IIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEF 260
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAMVAW+GFYIQAA TGKG +
Sbjct: 261 KVKEIKNGRLAMVAWIGFYIQAAVTGKGPV 290
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/191 (81%), Positives = 173/191 (90%)
Query: 126 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
GP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RWAML ALG +VPE+L
Sbjct: 35 GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELL 94
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
D+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIAICQALLMVGPE AR
Sbjct: 95 DLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYAR 154
Query: 246 YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
YCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVAFE+LKVKEIKNGRLAMVAWLGFY
Sbjct: 155 YCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFY 214
Query: 306 IQAAFTGKGMI 316
IQAA TGKG I
Sbjct: 215 IQAAVTGKGPI 225
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 152/186 (81%), Positives = 168/186 (90%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
DYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWAMLGALG +VPE+LD+ G
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
H VEPVWW+VGY+KLQG+TLDYLGIPGL +AG QG+IVIAICQALLMVGPE ARYCGIE
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGIE 120
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
ALEPLGI+LPGD+NYPGGALFDPL LSKDPVAFEELKVKEIKNGRLAMVAWLGFY+QAA
Sbjct: 121 ALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAAV 180
Query: 311 TGKGMI 316
TGKG +
Sbjct: 181 TGKGPV 186
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 161/261 (61%), Positives = 197/261 (75%), Gaps = 5/261 (1%)
Query: 58 ELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQ--DSSKFKALARQARNESL 115
++ GVL FSA+PF AV+A+A+S LG+ LQ R LE K+ + + + K LA AR+ES
Sbjct: 10 DVLGVLAFSALPFAAVQALADSDLGKKLQ-RDLEANKSEYKRAEQQREKELA-AARDESP 67
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYGEERP+WLGP+ YDYP+YL G PGDY +D L++D F +YF FE+LHARWAMLG
Sbjct: 68 WYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLG 127
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALGA +PE+L G +E WW VG +KLQGE L+YLG+ GL +AG QG+ +IAICQ
Sbjct: 128 ALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQV 187
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
LLM GPE AR CGIEALEPLG++LPGD NYPGG LFDPL LSKDP +F +L+VKEIKNGR
Sbjct: 188 LLMFGPEYARACGIEALEPLGLYLPGDKNYPGG-LFDPLGLSKDPASFADLQVKEIKNGR 246
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LA+VAW+GF QAA T KG I
Sbjct: 247 LALVAWVGFAAQAAVTRKGPI 267
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 196/273 (71%), Gaps = 2/273 (0%)
Query: 45 KPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFK 104
+P +SL +A +++ G+++FSA+PF AV+A+A+S LG+ L + K + +++ +
Sbjct: 53 QPSASLSLEAV-KDVGGLVLFSALPFVAVQALADSKLGKDLLAGLEAQKPLLRRQAAQQE 111
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R AR +S W+G RP WLGP+ P +L+GELPGDYG+D AGL +DP +Y
Sbjct: 112 AERRAARQQSPWFGAARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVEL 171
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL-QGETLDYLGIPGLHLAG 223
E+LHARWAMLGALGA+VPE+L + G+ +E WW VGY+KL GE L YLG+PGL +AG
Sbjct: 172 ELLHARWAMLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAG 231
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
QGV +IA CQ LLM GPE AR CGI ALEPLG+FLPGD NYPGG LFDPL LS D +
Sbjct: 232 GQGVAIIAFCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERY 291
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E ++V+EIKNGRLAMVAWLGF QAA T +G +
Sbjct: 292 EAMRVREIKNGRLAMVAWLGFAAQAAVTRQGPV 324
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/212 (64%), Positives = 158/212 (74%), Gaps = 3/212 (1%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
LQ ML + +++ KAL WYGE+ P WLG I Y YPSYLTGE+PGDY
Sbjct: 43 LQTLMLYYRAKNIRED---KALEEIGNTHFFWYGEDGPPWLGSISYKYPSYLTGEMPGDY 99
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
FD+ GL +DP+ KYFNFEILHARW L + A++P++L+++GA H VEPVWWR GYS
Sbjct: 100 DFDIVGLGQDPVELXKYFNFEILHARWVTLAFVSAVIPKILNLLGAVHFVEPVWWRAGYS 159
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN 264
KL+ TLDYL I GLHLAGSQG +VIAICQ L VGPE AR CG EAL+PLGI+LP DIN
Sbjct: 160 KLKVNTLDYLRIQGLHLAGSQGAVVIAICQILKQVGPEYARXCGTEALKPLGIYLPCDIN 219
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
YPGGALFDPLNLS DP AFEELKVKE+KNG L
Sbjct: 220 YPGGALFDPLNLSNDPEAFEELKVKEVKNGSL 251
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 135/265 (50%), Positives = 181/265 (68%), Gaps = 6/265 (2%)
Query: 54 ASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQ-DSSKFKALARQARN 112
++ ++ A + +F+A+P TA+ A++ S +G+ +Q + LE K LQ ++ K +A +AR
Sbjct: 115 STGEDGAAIFIFAALPITALTALSKSSVGKQVQEQ-LEAKLPELQAEADKTRAAHAEARR 173
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG RPR GP+ +L G + GD GFD GLSK+ +F KY E+LHARWA
Sbjct: 174 QSKWYGPSRPRLPGPL--GSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWA 231
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIA 231
MLG +G LVPE+L + G L EPVWW+VG SKL + TL++ GI G +AG QG+ +IA
Sbjct: 232 MLGVVGCLVPELLALRG-VDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIA 290
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQA+LM GPE ARY GI +LEP+G+FLPGD NYPGG FDPLN + D F E VKE+
Sbjct: 291 ACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEV 350
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM+A LGF++QAA T G +
Sbjct: 351 KNGRLAMLAMLGFFVQAAVTRVGPV 375
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/142 (82%), Positives = 127/142 (89%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDYLGIPG +AG QGV+VIAI
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPL LSKDPVAFE+LKVKEIK
Sbjct: 61 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIK 120
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAMVAW GFYIQAA TGKG
Sbjct: 121 NGRLAMVAWFGFYIQAAVTGKG 142
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 170/256 (66%), Gaps = 4/256 (1%)
Query: 62 VLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEER 121
+ VF+A+P TA+ A++ S +G+ +Q ++ ++ + + +QAR S WYG R
Sbjct: 1 IFVFAALPITALTALSKSSVGKQVQQQLEARLPELRAEAERQRQAHQQARQRSKWYGASR 60
Query: 122 PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
PR GP+ +L GE GD GFD L KDP AF ++ E+LHARWAMLG +G +V
Sbjct: 61 PRLPGPL--GGAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMV 118
Query: 182 PEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L + G L EPVWW+VG SKL + TL++ GI G +AG QG+ +IA CQA+LM G
Sbjct: 119 PELLALRGV-ELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGG 177
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
PE ARY GI +LEP+G+FLPGD NYPGG FDPLN + D F + V+EIKNGRLAMVA
Sbjct: 178 PEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVA 237
Query: 301 WLGFYIQAAFTGKGMI 316
LG ++QAA T KG +
Sbjct: 238 MLGLFVQAAVTKKGPV 253
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322
G A FDPL L KDP AF + E+ + R AM+ ++G + +G+ L +W
Sbjct: 79 GDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGVELGEPVW 134
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 158/258 (61%), Gaps = 6/258 (2%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERP 122
LV +A P + ++ S G L+ +LE + A S+ + L +A S YGE RP
Sbjct: 120 LVLAAFPIVGLTLLSKSDFGRRLEENILERRPALEAKRSEVERLREEAMEASPLYGEARP 179
Query: 123 RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
L P P +LTG L GD GFD L K P + + E+LHARWAML +G VP
Sbjct: 180 --LLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVP 237
Query: 183 EVLDMVGAF----HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E L + GA L EPVWW+VG +KL GE+L+Y G+ G +AG QGV VIA CQA+LM
Sbjct: 238 EALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLM 297
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
GPE ARY GI +LEP+G++LPGD NYPGGA FDP LS D F KV EI++GRLAM
Sbjct: 298 GGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAM 357
Query: 299 VAWLGFYIQAAFTGKGMI 316
VA LG + QA TG+G +
Sbjct: 358 VAMLGCFAQAIVTGEGPV 375
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 149/229 (65%), Gaps = 2/229 (0%)
Query: 90 LETKKAALQDSSKFKALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
++ ++ AL K + R +AR S +YG R ++LG + Y+YP++L G L GD GFD
Sbjct: 4 IDRERPALDAEKARKEMERAEARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDP 63
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
L+ ++Y E+LH RWAMLG +GA VPE LD G +L EPVWW+VG +K+
Sbjct: 64 LNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMNS 123
Query: 209 E-TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
+ LDYLG G H+AG G+ VIA CQ +LM GPE ARY GI +LEP+G++LPGD +YPG
Sbjct: 124 DIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPG 183
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GA FDP S D FE+ KV EIK+ RLAM+A LG IQA T +G I
Sbjct: 184 GAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQGPI 232
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 161/255 (63%), Gaps = 3/255 (1%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERP 122
+ SA P + I+ + GE L + + + A + + ++ + +AR S YG R
Sbjct: 104 FLLSAAPVVLLTVISKTSFGESLMKNIDDQRPALVAEKARRENERARARERSSLYGARRV 163
Query: 123 RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
++LG Y+YP++L G L GD GFD GL KD + + E+LHARWAMLG +G VP
Sbjct: 164 KFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKDDLPRMR--ELELLHARWAMLGIVGVAVP 221
Query: 183 EVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAICQALLMVGP 241
E+L+ G L EPVWW+VG +K+ + +LDY G+ G H+AG G+ +IA CQ +LM GP
Sbjct: 222 ELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGP 281
Query: 242 ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
E ARY GI++LEP+G++LPGD +YPGGA FDP +S D FE+ KV EIK+GRLAM+A
Sbjct: 282 EYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMIAM 341
Query: 302 LGFYIQAAFTGKGMI 316
LG QA T G I
Sbjct: 342 LGVAAQAFVTRAGPI 356
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 163/275 (59%), Gaps = 25/275 (9%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKA-------ALQDSSKFKALARQARNESL 115
L+FSA+P + ++ S LG+ L+ + + K+A + + +ALA+ +
Sbjct: 134 LLFSALPVVLLTCVSKSDLGDGLREQARKAKEADEGGTEGGREGRERMRALAKA--KFPM 191
Query: 116 WYGEERPRWL----------------GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
++G+ER RW+ + +PSYL G L GD FD LS +
Sbjct: 192 YFGKERGRWMPRKSVSFFSGGDSDDDASSSFMFPSYLDGTLAGDAQFDPLRLSDTEEKRR 251
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+ E+LH RWAML +G VPE+L GA L EP+WW++G L+G ++YLGI G
Sbjct: 252 RNVELELLHGRWAMLAVVGVCVPEILSRSGALELSEPIWWKIGEKVLEGIDVNYLGIEGF 311
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
H+AG+ G+I IA CQA+LM GPE ARY GIE+LEP+G++LPGD NYPGG FDP NLS D
Sbjct: 312 HIAGASGIIGIAFCQAVLMGGPEYARYVGIESLEPVGVYLPGDTNYPGGGPFDPFNLSAD 371
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
EL+V E+K+GRLAM+A LG + QA T +G
Sbjct: 372 AERDVELRVSEVKHGRLAMIAMLGVFAQAFVTREG 406
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 153/258 (59%), Gaps = 7/258 (2%)
Query: 65 FSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESL--WYGEERP 122
SA+P + AI+ + G L + +E ++ L+ R A ++ YG R
Sbjct: 123 LSALPIVLLTAISKTEFGAGLA-KSIEDRRPELEAERARVERERAAARATMPAHYGPTRR 181
Query: 123 RWL-GPIPYDYPSYLTGELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGAL 180
++L Y +P +L G L GD GFD GL S P +Y E+LH RWAMLG +GA
Sbjct: 182 KFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAA 241
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGE--TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VPE L G L EPVWW+VG +KL LDYLG+ G H+AGS G+ VIA CQ +LM
Sbjct: 242 VPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLM 301
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
GPE AR GI++L P+G++LPGD +YPGGA FDP +S D FE KV E+K+GRLAM
Sbjct: 302 GGPEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAM 361
Query: 299 VAWLGFYIQAAFTGKGMI 316
VA LG + QA TG G +
Sbjct: 362 VAMLGCFAQAWATGVGPV 379
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 127/211 (60%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ + + S+WYGE+RP+WLGP + PSYL+GE PGDYG+D AGLS DP F KY
Sbjct: 7 RTVKGKTTPTSMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYRE 66
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VWW+ G LDYLG P L A
Sbjct: 67 IEVIHARWAMLGALGCLTPELLAKNGV-SFGEAVWWKAGAQIFAPGGLDYLGNPSLVHA- 124
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q +I I Q LLM E R G E L D YPGG FDPL L+ DP F
Sbjct: 125 -QSIIAILASQVLLMGAIEGYRVYGGPGGEGL------DKVYPGGDYFDPLGLADDPDTF 177
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 178 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 208
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 140/246 (56%), Gaps = 22/246 (8%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A + + P+ + + M T+K + + +S+WYG +RP++LGP
Sbjct: 5 SANTFVGSKPVNKKMVTSMRRTQK-------------KSSAPDSVWYGPDRPQFLGPFSG 51
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D PSYLTGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G Q LDYLG +L +Q ++ I CQ +LM E R G
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLG--NANLVHAQSILAILGCQVVLMGAIEAYRVNGGP 169
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
E L PGD FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA
Sbjct: 170 LGEGLDPLYPGD-------KFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVV 222
Query: 311 TGKGMI 316
TGKG I
Sbjct: 223 TGKGPI 228
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 131/217 (60%), Gaps = 9/217 (4%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
+S + + + +S+WYG +RP++LGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 21 TSMRRTQKKGSAPDSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDYGWDTAGLSADPETFR 80
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 81 RYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NA 138
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
+L +Q ++ I CQ +LM E R G E L PGD FDPL L+ D
Sbjct: 139 NLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPGD-------KFDPLGLADD 191
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P F ELK+KEIKNGRLAM + GF++QA TGKG I
Sbjct: 192 PDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPI 228
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 138/232 (59%), Gaps = 19/232 (8%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ ++ + TKK +S + + + +S+WYG ERP++LGP D PSYLTGE PGD
Sbjct: 9 FIGSQAVTTKKV----TSMRRTQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGD 64
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 65 YGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGS 124
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLP 260
Q LDYLG L +Q ++ I CQ LLM E R G E L+PL
Sbjct: 125 QIFQEGGLDYLG--NSSLVHAQYILAILGCQVLLMGAIEAYRVNGGPLGEGLDPL----- 177
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + GFY+QA TG
Sbjct: 178 ----YPGGQ-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 133/201 (66%), Gaps = 13/201 (6%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYGE RP++LGP P+YLTGE PGDYG+D AGLS DP+ F+ Y E++HARWAMLG
Sbjct: 89 WYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLG 148
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L+ G F+L PVW++ G + + +DYLG P +L +Q + + Q
Sbjct: 149 ALGCIFPELLNSAG-FNL--PVWFKAGGTIFE-NGIDYLGNP--NLVHAQSALAVLSVQV 202
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R+ G PLG P D+ YPGGA FDPL +KDP ELKVKEIKNGR
Sbjct: 203 VLMGASEAYRFNG----GPLG--EPADVLYPGGA-FDPLGFAKDPSKAAELKVKEIKNGR 255
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM A LG+Y+QA TGKG I
Sbjct: 256 LAMTAMLGYYVQALATGKGPI 276
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/203 (52%), Positives = 129/203 (63%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S +YG ER WLGP+ PSYLTGE PGDYG+D AGLS DP F++Y E++HARWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G + EPVW++ G Q LDYLG PGL A Q ++ C
Sbjct: 111 LGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNPGLVHA--QSILATLAC 167
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVKEIKN
Sbjct: 168 QVILMGAIEGFRVNGGPAGEGL------DKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TG+G I
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPI 244
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 137/235 (58%), Gaps = 11/235 (4%)
Query: 84 LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELP 141
L+ NR L K +AA + + + A A++ + WYG +R +WLGP + P+YLTGE P
Sbjct: 5 LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F+KY E++HARWA+LGALG L PE+L EPVW++
Sbjct: 65 GDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKA 124
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
G LDYLG P L A Q ++ Q +LM E R G A E L PG
Sbjct: 125 GAQIFSEGGLDYLGSPALIHA--QNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPG 182
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 183 ES-------FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPI 230
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 135/236 (57%), Gaps = 17/236 (7%)
Query: 77 ANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYL 136
A + +G + N+ + T Q S + +++WYG +RP++LGP D PSYL
Sbjct: 6 AKTFIGSQVANKKMVTSMRRTQKKS--------SAPDNVWYGPDRPQFLGPFSGDCPSYL 57
Query: 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
TGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E
Sbjct: 58 TGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGES 117
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
VW++ G Q LDYLG +L +Q ++ I CQ LLM E R G E L
Sbjct: 118 VWFKAGSQIFQEGGLDYLG--NSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLD 175
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
PGD FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TG
Sbjct: 176 PLYPGD-------KFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 158/300 (52%), Gaps = 21/300 (7%)
Query: 20 CSSSSGGCSLRKILALK--PSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIA 77
C SS+G LR +A PS + + S L K E+ G + + P A+
Sbjct: 23 CVSSTG---LRSGVAATRGPSMVKVAARGVSQLANKRISGEM-GRNILAESPKAAMLVKT 78
Query: 78 NSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYL 136
+ +L+++ + + A K A Q WYG +R WLGP PSYL
Sbjct: 79 GAITNKLMKSGLSMNQIATAVTCQKIGGAACQE-----WYGPDRALWLGPFSEGAVPSYL 133
Query: 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
TGE PGDYG+D GLS DP F Y E++HARWAMLGALG + PE+L + EP
Sbjct: 134 TGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEP 193
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
VW++ G LDYLG P L A Q ++ I CQ +LM G E R G A E L
Sbjct: 194 VWFKAGSQIFAEGGLDYLGNPSLIHA--QSILAILACQVVLMGGAEAYRVNGGPAGEGL- 250
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D PGGA FDPL L+ DP F ELKVKEIKNGRLAM + LGFY+QA TGKG +
Sbjct: 251 -----DAINPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIATGKGPV 304
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 8/218 (3%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 32 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 92 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 151
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ + Q +LM E R G++ + G+ YPGG FDPL L
Sbjct: 152 P--NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGL 203
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 204 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 241
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 131/207 (63%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGSP--NLIHAQSILAIWA 163
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 122/202 (60%), Gaps = 10/202 (4%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 246 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 298
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + LGFY+QA TGKG +
Sbjct: 299 RLAMFSMLGFYVQAIATGKGPV 320
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 131/207 (63%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 122/202 (60%), Gaps = 10/202 (4%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 115 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 232
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 233 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 285
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + LGFY+QA TGKG +
Sbjct: 286 RLAMFSMLGFYVQAIATGKGPV 307
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 8/218 (3%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 35 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 94
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 95 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 154
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ + Q +LM E R G++ + G+ YPGG FDPL L
Sbjct: 155 P--NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGL 206
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 244
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 141/243 (58%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSTLFGEARVTMRKTT--------AKAKQVSSSSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG++ PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 246 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 298
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + LGFY+QA TGKG +
Sbjct: 299 RLAMFSMLGFYVQAISTGKGPV 320
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 101 SKFKALARQARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
++ K++ +RN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 13 AQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 72
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 73 AYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NS 130
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
+L +Q ++ I CQ +LM E R G E L PGD FDPL L+ D
Sbjct: 131 NLIHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGD-------KFDPLGLADD 183
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P F ELKVKEIKNGRLAM + GFY+QA TGKG I
Sbjct: 184 PDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 141/243 (58%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A A+Q + + WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSALFGEARVTMRKTA--------AKAKQLSSSNPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 127 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 244
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 245 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 297
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + LGFY+QA TGKG +
Sbjct: 298 RLAMFSMLGFYVQAISTGKGPV 319
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 124/202 (61%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 40 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL + EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNP--NLVHAQSILAVLG 157
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q LLM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 158 FQVLLMGAVEGFRINGLDGVG------NGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 211
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKG 233
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 131/218 (60%), Gaps = 8/218 (3%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + + R + + LWYG +R ++LGP PSYL+GE PGDYG+D AGLS DP
Sbjct: 30 LRDVAAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPE 89
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL EPVW++ G LDYLG
Sbjct: 90 AFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGN 149
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ + Q LLM E R G++ + G+ YPGG FDPL L
Sbjct: 150 P--NLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGL 201
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 202 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM GF++QA TGKG I
Sbjct: 214 ELKNGRLAMFPMFGFFVQAIVTGKGPI 240
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 128/208 (61%), Gaps = 10/208 (4%)
Query: 110 ARNESLWYGEERPRWLGPI-PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L L E VW++ G Q LDYLG P L +Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNP--SLVHAQSIL 138
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G PLG L D+ +P G FDPL L+ DP F ELKV
Sbjct: 139 AILGCQVVLMGLIEAYRVNG----GPLGKGL--DVLHP-GEKFDPLGLADDPDTFAELKV 191
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM + GFY+QA TGKG I
Sbjct: 192 KEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 131/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 81 LGELLQNRMLETKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTG 138
+G+ L + E + + +F ++ R ++ +S+WYG +RP++LGP PSYLTG
Sbjct: 12 VGQTLLKQQNELVRKVGGNGGRF-SMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTG 70
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
E PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW
Sbjct: 71 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVW 129
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIF 258
++ G Q LDYLG P +L +Q ++ I CQ +LM E R G PLG
Sbjct: 130 FKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGG----GPLGEG 183
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L D YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 184 L--DKIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 137/234 (58%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 1 QQNELVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 59
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 60 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQI 118
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I CQ +LM E R G E L+PL
Sbjct: 119 FSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL------- 169
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 170 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 220
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 132/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 141/246 (57%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N L L + +K A A+Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVSLSALFGEARVTMRKTT--------AKAKQVASSSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQA+LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQAVLMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 180 ----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSY TGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +++ + ++S+WYG +RP+WLGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 38 KTVSKSSGSDSIWYGADRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 97
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 155
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 156 -QSILAIWASQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 147/255 (57%), Gaps = 19/255 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGE 119
A + S+ F A KA+ N P LL + +K A A A+Q + S WYG
Sbjct: 3 AATMSLSSSTF-AGKAVKNVPSLALLGEARVTMRKTA--------AKAKQVSSGSPWYGA 53
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 DRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGC 113
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 VFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMG 170
Query: 240 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299
E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM
Sbjct: 171 AVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMF 223
Query: 300 AWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 SMFGFFVQAIVTGKG 238
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 124/208 (59%), Gaps = 10/208 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 138
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G E L + PG+ FDPL L+ DP F ELKV
Sbjct: 139 AILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGE-------KFDPLGLADDPDTFAELKV 191
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM + GFY+QA TGKG I
Sbjct: 192 KEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 136/233 (58%), Gaps = 11/233 (4%)
Query: 84 LLQNRMLETKKA--ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
+L+ R L ++ AL+D NE LWYG +R ++LGP PSYL GE P
Sbjct: 13 VLKTRFLGQTRSSSALRDVVAMGNGKFTMSNE-LWYGPDRVKYLGPFSAQTPSYLNGEFP 71
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP AF + E++H RWAMLGALG + PEVL+ EPVW++
Sbjct: 72 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKA 131
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
G LDYLG P +L +Q ++ + Q LLM E R G++ + G
Sbjct: 132 GAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG------EG 183
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF+IQA TGKG
Sbjct: 184 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQAIVTGKG 236
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 135/234 (57%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG L PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I CQ +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 132/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSQGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DAIYPGGA-FDPLGLADDPDAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +++ + ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 KTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 158 -QSILAIWACQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTF 209
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 126/210 (60%), Gaps = 8/210 (3%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 39 ASGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 99 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 156
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F
Sbjct: 157 QSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGLADDPVTFA 210
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 132/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 131/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 162 CQVVLMGFIEGYRVGG----GPLGEGL--DSIYPGGA-FDPLGLADDPEAFAELKVKEIK 214
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 131/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 KSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 162 CQVVLMGFVEGYRVGG----GPLGEGL--DAIYPGGA-FDPLGLADDPDAFAELKVKEIK 214
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 132/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEVVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 124/208 (59%), Gaps = 10/208 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+RN WYG +RP+WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 6 SRNAIEWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 65
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 66 ARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 123
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G E L PGD FDPL L+ DP F ELKV
Sbjct: 124 AILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGD-------KFDPLGLADDPDTFAELKV 176
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM + GFY+QA TGKG I
Sbjct: 177 KEIKNGRLAMFSMFGFYVQAIVTGKGPI 204
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 127/201 (63%), Gaps = 9/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAM
Sbjct: 50 SAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAM 109
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G +VEPVW++ G LDYLG PGL A Q ++
Sbjct: 110 LGALGCITPELLAKNGT-PIVEPVWFKAGAQIFAEGGLDYLGNPGLVHA--QSILATLAV 166
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVKEIKN
Sbjct: 167 QVILMGAIEGYRVNGGPAGEGL------DKLHPGGQFFDPLGLAEDPDAFAELKVKEIKN 220
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 221 GRLAMFSMFGFFVQAIVTGKG 241
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 72 AVKAIANSPLG--ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIP 129
A AI S L L+ R +K + D +A +S+WYG +RP++LGP
Sbjct: 2 AASAIQKSALAGQRGLRQRDELVRKVGVSDGRVSMRRTVKAAPQSIWYGPDRPKFLGPFS 61
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
PSYLTGE PGDYG+D AGLS DP F K E++HARWAMLGALG + PE+L G
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNG 121
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG- 248
E VW++ G LDYLG P +L +Q ++ I Q +LM E R G
Sbjct: 122 V-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWATQVVLMGFIEGYRVGGG 178
Query: 249 --IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
E L+PL YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 179 PLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 228
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 229 QAIVTGKG 236
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 137/235 (58%), Gaps = 16/235 (6%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L+ R +K + D +A +S+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 17 LKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDY 76
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQ 135
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPG 261
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 136 IFSEGGLDYLGNP--NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPL------ 187
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 188 ---YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 139/234 (59%), Gaps = 18/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 145/246 (58%), Gaps = 10/246 (4%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A++ A + L Q+ L K AL + ++ +S+WYG +RP++LGP
Sbjct: 4 SAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 123
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G
Sbjct: 124 -KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRVGG-- 178
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG L D YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 --GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 311 TGKGMI 316
TGKG I
Sbjct: 234 TGKGPI 239
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L + +K A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPSSALFGEARVTMRKTT--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFNEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 141/235 (60%), Gaps = 15/235 (6%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P EL+ R + T +A + + K +++ + ++S+WYG +RP++LGP + PSYL GE
Sbjct: 20 PANELV--RKVGTSQARV---TMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGE 74
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
GDYG+D AGLS DP F + E++HARWAMLGALG L PE+L G E VW+
Sbjct: 75 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWF 133
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFL 259
+ G LDYLG P L A Q ++ I CQ +LM E R G PLG
Sbjct: 134 KAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRVAG----GPLGDVT 187
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
D YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 188 --DPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 140/246 (56%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K A A +Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNLPSSSLFGEARVTMRKTA--------AKVKQVASGSPWYGSDRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 180 ----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 140/246 (56%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N L L + +K A A+Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVSLSALFGEARVTMRKTT--------AKAKQVASSSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 180 ----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 143/244 (58%), Gaps = 19/244 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ + SLWYG +R ++LGP
Sbjct: 13 AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSGSLWYGPDRVKYLGPFSG 64
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRVAG-- 179
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 180 --GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 311 TGKG 314
TGKG
Sbjct: 235 TGKG 238
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 145/252 (57%), Gaps = 18/252 (7%)
Query: 66 SAIPFTAVKA-IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRW 124
S I F+A+ A P EL+ +K F ++ +S+WYG +RP++
Sbjct: 4 SGIQFSAIAGQTALKPQNELV-------RKVGGNGGRFFMRRTVKSAPQSIWYGPDRPKY 56
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+
Sbjct: 57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 116
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECA 244
L G E VW++ G LDYLG P +L +Q ++ I CQ +LM E
Sbjct: 117 LSKNGV-QFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLMGFVEGY 173
Query: 245 RYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF
Sbjct: 174 RVGG----GPLGEDL--DKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 226
Query: 305 YIQAAFTGKGMI 316
++QA TGKG +
Sbjct: 227 FVQAIVTGKGPV 238
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 147/256 (57%), Gaps = 20/256 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSSSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G EPLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM
Sbjct: 171 GAVEGYRVAG----EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Query: 299 VAWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 FSMFGFFVQAIVTGKG 239
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 SQVVLMGLIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 131/211 (62%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 21 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 80
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 81 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 138
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 139 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 190
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 123/201 (61%), Gaps = 9/201 (4%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F Y E++HARWAMLG
Sbjct: 34 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLG 93
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L E VW++ G LDYLG L A Q ++ I CQ
Sbjct: 94 ALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHA--QSILAILGCQV 151
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM G E R G PLG L D +PGGA FDPL L+ DP F ELKVKEIKNGR
Sbjct: 152 VLMGGAEAFRVNG----GPLGEDL--DKLHPGGA-FDPLGLADDPDTFSELKVKEIKNGR 204
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM + GF++QA TGKG +
Sbjct: 205 LAMFSMFGFFVQAIVTGKGPV 225
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ AR++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS D F +
Sbjct: 39 RTVSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 138/234 (58%), Gaps = 18/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 132/209 (63%), Gaps = 7/209 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A+ ++++S+WYG +RP++LGP P+YLTGE PGDYG+D +GLS DP F+++ E
Sbjct: 27 AKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVE 86
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++HARWAMLGALG + PEVL+ E VW++ G L+YLG PGL A Q
Sbjct: 87 VIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHA--Q 144
Query: 226 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 285
++ + Q LLM E R G P G D YPGGA FDPL L+ DP E
Sbjct: 145 SIVATLVVQVLLMGAVEIYRANG---EGPSGFGEGQDNLYPGGA-FDPLGLADDPDTLAE 200
Query: 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LKVKE+KNGRLAM++ LGF++QA TGKG
Sbjct: 201 LKVKELKNGRLAMMSMLGFFVQAIVTGKG 229
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 132/231 (57%), Gaps = 10/231 (4%)
Query: 86 QNRMLETKKAALQDSSKFKAL--ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
Q L +K A A+ +R LWYG +R ++LGP PSYLTGE PGD
Sbjct: 16 QTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 75
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ EPVW++ G
Sbjct: 76 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 135
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
LDYLG P +L +Q ++ + Q +LM E R G+ + G+
Sbjct: 136 QIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG------EGNN 187
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 188 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 137/234 (58%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 132/231 (57%), Gaps = 10/231 (4%)
Query: 86 QNRMLETKKAALQDSSKFKAL--ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
Q L +K A A+ +R LWYG +R ++LGP PSYLTGE PGD
Sbjct: 14 QTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 73
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ EPVW++ G
Sbjct: 74 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 133
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
LDYLG P +L +Q ++ + Q +LM E R G+ + G+
Sbjct: 134 QIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG------EGNN 185
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 186 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 123/208 (59%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
R LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E+
Sbjct: 41 GRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 158
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q LLM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 159 ILAVLGFQVLLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 212
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 92 TKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PGD
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGD 68
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 69 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGA 127
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
Q LDYLG P +L +Q ++ I Q LLM E R G PLG L D
Sbjct: 128 QIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--DK 179
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 180 LYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 229
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 131/214 (61%), Gaps = 16/214 (7%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G + LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFREGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
Q ++ I CQ +LM E R G E + PL YPGG+ FDPL L+ DP
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAGGPLGEVVNPL---------YPGGS-FDPLGLADDP 203
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 204 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCDFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSTFGFFVQAIVTGKG 237
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 14 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSSSPWYGSDRVLYLGPLSGD 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++++WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 158 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 209
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 134/226 (59%), Gaps = 14/226 (6%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T K AL +K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AG
Sbjct: 13 TAKTALVKGNK--RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 68
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F+KY E++HARWAMLGALG + PE+L G E VW+R G +
Sbjct: 69 LSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGG 128
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P L A S G IVI+ Q +LM E R G A E L PG+
Sbjct: 129 LDYLGSPALIHAQSIGAIVIS--QVILMGLIEGYRVNGGPAGEGLDPLYPGES------- 179
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TGKG +
Sbjct: 180 FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPV 225
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 AQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 142/246 (57%), Gaps = 10/246 (4%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A++ A + L Q+ L K A+ ++ S+WYG +RP++LGP
Sbjct: 4 SAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSD 63
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 64 QIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G
Sbjct: 124 -KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRVGG-- 178
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG L D YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 179 --GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 311 TGKGMI 316
TGKG I
Sbjct: 234 TGKGPI 239
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 132/224 (58%), Gaps = 13/224 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
A L+D + A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS
Sbjct: 26 SNAPLRDIAA-AATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLS 84
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP AF + E++H RWAMLGALG + PEVL+ EPVW++ G LD
Sbjct: 85 ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLD 144
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGAL 270
YLG P +L +Q ++ + Q +LM E R G+ + GD N YPGG
Sbjct: 145 YLGNP--NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGV--------GDGNDLYPGGQY 194
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 195 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 8/210 (3%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 145/247 (58%), Gaps = 20/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTANK--------AKPVSSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 122 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVA 178
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G EPLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 179 G----EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 232 ALVTGKG 238
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 8/210 (3%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 123/207 (59%), Gaps = 10/207 (4%)
Query: 111 RNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
RN WYG +R +WLGP D PSYLTG+ PGDYG+D AGLS DP F+ Y E++HA
Sbjct: 22 RNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHA 81
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 82 RWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSILA 139
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G E L + PG+ FDPL L+ DP F ELKVK
Sbjct: 140 ILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGE-------KFDPLGLADDPDTFAELKVK 192
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM + GFY+QA TGKG I
Sbjct: 193 EIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 139/234 (59%), Gaps = 18/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRIAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 127/212 (59%), Gaps = 12/212 (5%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP--NLVHA 154
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVA 282
Q ++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV
Sbjct: 155 QSILAVLGFQVVLMGLVEGYRINGLPGV--------GDGNDLYPGGQYFDPLGLADDPVT 206
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 92 TKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PGD
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGD 68
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 69 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGA 127
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
Q LDYLG P +L +Q ++ I Q LLM E R G PLG L D
Sbjct: 128 QIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--DK 179
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 180 LYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 229
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
AR + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 97
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 98 IHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP--NLVHAQS 155
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q +LM E R G+ + G+ YPGG FDPL L+ DP F EL
Sbjct: 156 ILAVLGFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAEL 209
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 134/226 (59%), Gaps = 14/226 (6%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T K+ L +K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AG
Sbjct: 10 TTKSTLPKGNK--RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 65
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F+KY E++HARWAMLGALG + PE+L G E VW+R G +
Sbjct: 66 LSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGG 125
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P L A S G IVI+ Q +LM E R G A E L PG+
Sbjct: 126 LDYLGSPALIHAQSIGAIVIS--QVILMGLIEGYRVNGGPAGEGLDPLYPGES------- 176
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TGKG +
Sbjct: 177 FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPV 222
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 142/244 (58%), Gaps = 19/244 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG-- 180
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 181 --GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235
Query: 311 TGKG 314
TGKG
Sbjct: 236 TGKG 239
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 162 SQVVLMGLIEGYRVGG----GPLGEGL--DKLYPGGA-FDPLGLADDPEAFAELKVKELK 214
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A K + N P L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 ARKMVENIPSSALFGEARVTMRKTA--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L K L ++ R + +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LSRKVGNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTA 84
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G +
Sbjct: 85 GLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG-IKFGEAVWFKAGSQIFKEG 143
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
LDYLG P +L +Q ++ I Q +LM E R G PLG L D YPGGA
Sbjct: 144 GLDYLGNP--NLVHAQSILAIWASQVILMGAVEGYRVGG----GPLGEGL--DKIYPGGA 195
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELKVKE+KNGRLAM + GF+ QA TGKG I
Sbjct: 196 -FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPI 241
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 138/234 (58%), Gaps = 18/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVGLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 140/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L+ + + +K A A A+Q + S WYG +R +LG + +
Sbjct: 9 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGSLSGE 60
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 119
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW+ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 120 KFGEAVWFMAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG--- 174
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 175 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 230
Query: 312 GKG 314
GKG
Sbjct: 231 GKG 233
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ +
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAVWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 SQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 143/247 (57%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSSSEITGNGKVTMRKTASK--------AKTVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 41 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 158
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 159 ILAVLGFQVILMGLVEGYRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 212
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 133/217 (61%), Gaps = 10/217 (4%)
Query: 100 SSKFKALARQARNES--LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA 157
S++ + + R +++ S +WYG +RP +LGP + PSYL GE PGDYG+D AGLS DP +
Sbjct: 30 SNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDTAGLSADPES 89
Query: 158 FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
F + E++H RWAMLGALG + PE+L L EPVW++ G LDYLG P
Sbjct: 90 FARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 218 GLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277
+L +Q ++ + Q +LM E R G+ G+ GD+ YPGG FDPL L+
Sbjct: 150 --NLIHAQSILAVWAVQVVLMGAVEAYRTNGLP-----GVGEGGDL-YPGGKYFDPLGLA 201
Query: 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
DP ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 202 DDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 40 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 99
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 100 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 157
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 158 ILAVLGFQVILMGLVEGYRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 211
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 35 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGD 86
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 87 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 145
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 146 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 200
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 201 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 256
Query: 312 GKG 314
GKG
Sbjct: 257 GKG 259
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 14 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGD 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 141/243 (58%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L+ + + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E W++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAGWFKAGSQIFSDGGLDYLGNPSLVHA--QSLLAIWACQVVLMGAVEGYRIAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L++ P AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 143/247 (57%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E++ N + +K ++ A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSSYEIIGNGKVTMRKTVIK--------AKPVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VKA +P GE R+ K A + A + S WYG +R +LG
Sbjct: 13 AMAGTPVKASRAAPFGE---GRITMRKTAGKP---------KVAASSSPWYGSDRVLYLG 60
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ D PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 121 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRV 177
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 178 AG----GPLGEIV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 231 QAIVTGKG 238
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 146/256 (57%), Gaps = 20/256 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSFVG-KAVKLSPSSSEITGNGKVTMRKTATK--------AKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM
Sbjct: 171 GAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Query: 299 VAWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 FSMFGFFVQAIVTGKG 239
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 71 TAVKAIANSPLGELLQN-RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIP 129
T+ A+ ++ G+ L+ L K A + + A +A + S+WYG +RP +LGP
Sbjct: 3 TSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFS 62
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
PSYL+GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 63 GSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG 122
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 V-KFGEAVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRVAG- 178
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 ---GPLGEVE--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 232
Query: 310 FTGKGMI 316
TGKG I
Sbjct: 233 VTGKGPI 239
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+ + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 36 TMRKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNREL 95
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 96 EVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA-- 152
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 153 QSILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTFA 205
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/256 (45%), Positives = 147/256 (57%), Gaps = 20/256 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM
Sbjct: 171 GAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Query: 299 VAWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 FSMFGFFVQAIVTGKG 239
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 138/243 (56%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A K + N P L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 ARKMVENIPSSALFGEARVTMRKTA--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSFVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 141/247 (57%), Gaps = 21/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K A A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSAPELMGNGRVSMRKTA----------AKSVSSGSPWYGPDRVKYLGP 60
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 121 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRVA 177
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 178 G----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 231 AIVTGKG 237
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 136/233 (58%), Gaps = 10/233 (4%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
L Q L K + S ++ +S+WYG +RP++LGP PSYLTGE PGD
Sbjct: 17 LKQQNELVRKVGSFGSSRTTMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGD 76
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGS 135
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
LDYLG P +L +Q ++ I Q +LM E R G PLG L D
Sbjct: 136 QIFSEGGLDYLGNP--NLVHAQSILAIWASQVVLMGLIEGYRIGG----GPLGEGL--DS 187
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG +
Sbjct: 188 LYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 37 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 96
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 97 IHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQS 154
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 155 ILAVLGFQVVLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 208
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 123/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R I L +G G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 162 FQIVLMGLVEGFR---INGLPDVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKG 237
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 78 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 134
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 135 SQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 187
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 188 NGRLAMFSMFGFFVQAIVTGKGPI 211
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 140/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L + +K A A A+ + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 180 -GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 267
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG +
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 130/213 (61%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 163 VQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG +
Sbjct: 213 ELKNGRLAMTSMFGFFVQAIVTGKGPV 239
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 131/233 (56%), Gaps = 11/233 (4%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGD 143
+ L+ A K +A+ A + WYG R +WLGP + P+YLTGE PGD
Sbjct: 7 FSRKALQVSAKATGKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGD 66
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 67 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGV-QFGEAVWFKAGA 125
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
Q LDYLG P L A Q ++ CQ +LM E R G A E L PG+
Sbjct: 126 QIFQEGGLDYLGNPSLVHA--QNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGES 183
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 184 -------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 229
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 125/210 (59%), Gaps = 12/210 (5%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 39 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 98
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 99 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 156
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFE 284
++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV F
Sbjct: 157 ILAVLGFQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFA 208
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG D
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--D 186
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 187 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSALFGEARVTMRKTA--------AKAKQVSSSSPWYGADRVLYLGPLSRE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTG+ PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG--- 179
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG FDPL L++ P AF+ LKVKEIKNGRLAM + GF +QA T
Sbjct: 180 -GPLGEIV--DPLYPGGR-FDPLGLAERPQAFDALKVKEIKNGRLAMFSMFGFLVQAIVT 235
Query: 312 GKG 314
GKG
Sbjct: 236 GKG 238
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 143/246 (58%), Gaps = 10/246 (4%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A++ A + L Q+ L K + D ++ +S+WYG +RP++LGP
Sbjct: 4 SAIQQSAFAGQTALKQSNELVRKVGSSGDGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGV 123
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P +L +Q ++ I Q +LM E R G
Sbjct: 124 -KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGFVEGYRVGG-- 178
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG L D YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 --GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAII 233
Query: 311 TGKGMI 316
TGKG I
Sbjct: 234 TGKGPI 239
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG D
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--D 186
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 187 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 127/206 (61%), Gaps = 10/206 (4%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
++ ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F + E++H
Sbjct: 42 KSTSDSIWYGADRPKYLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIH 101
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG L PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 102 ARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIL 158
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I Q +LM E R G PLG D YPGG+ FDPL L+ DP F ELKV
Sbjct: 159 AIWASQVVLMGAVEGYRVAG----GPLGEIT--DPIYPGGS-FDPLGLADDPDTFAELKV 211
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM + GF++QA TGKG
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG D
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--D 186
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 187 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 140/235 (59%), Gaps = 19/235 (8%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P+ EL +R + T +A + ++ + + ++S+WYG +RP++LGP + PSYL GE
Sbjct: 20 PVNEL--SRKVGTSEARV-------SMRKSSGSDSIWYGADRPKFLGPFSGETPSYLNGE 70
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
GDYG+D AGLS DP F + E++HARWAMLGALG + PE+L G E VW+
Sbjct: 71 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV-KFGEAVWF 129
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFL 259
+ G LDYLG P L A Q ++ I CQ +LM E R G PLG
Sbjct: 130 KAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRVAG----GPLGEVT 183
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
D YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 184 --DPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 143/247 (57%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E L + +KAA + ++ A +S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPTASETLGEGRITMRKAAGK--------SKVATIDSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAIEGYRVA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVT--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 144/247 (58%), Gaps = 20/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTASK--------AKPVSSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 122 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVA 178
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 179 G----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 232 AIVTGKG 238
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 132/214 (61%), Gaps = 12/214 (5%)
Query: 105 ALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
+ R R+ ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 TMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 96 ELEVIHSRWAMLGALGCVFPEILARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLV 152
Query: 223 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
+Q ++ I Q +LM E R G PLG L D YPGG+ FDPL L+ DP A
Sbjct: 153 HAQSILAIWASQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGS-FDPLGLADDPEA 205
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
F ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 123/203 (60%), Gaps = 8/203 (3%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RW
Sbjct: 41 SNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 100
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 101 AMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVL 158
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEI
Sbjct: 159 GFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPATFAELKVKEI 212
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAM + GF++QA TGKG
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKG 235
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 129/209 (61%), Gaps = 10/209 (4%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
+ + + ++S+WYG +RP++LGP+ + PSYLTGE GDYG+D AGLS DP F + E
Sbjct: 37 MRKASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELE 96
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 97 VIHARWAMLGALGCVTPELLAKNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--Q 153
Query: 226 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 285
++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP F E
Sbjct: 154 SILAIWASQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTFAE 206
Query: 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K A+ + +S WYG +RP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 29 KPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 88
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG P L A
Sbjct: 89 LELIHARWAMLGALGCIFPELLGSYGV-PFGESVWFKAGAQIFQEGGLDYLGNPSLVHA- 146
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG L D YPGG+ FDPL L+ DP F
Sbjct: 147 -QSILAILGTQVILMGAIEGYRVNG----GPLGEGL--DKLYPGGS-FDPLGLADDPDTF 198
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 229
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 42 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 159
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 160 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKG 235
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 141/246 (57%), Gaps = 10/246 (4%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A+++ A + L Q L K ++ +S+WYG +RP++LGP
Sbjct: 4 SAIQSSAFAGQTSLKQQNELVRKVGNFSGGRATMRRTVKSTPQSIWYGADRPKYLGPFSE 63
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P +L +Q ++ I Q +LM E R G
Sbjct: 124 -KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWASQVVLMGLIEGYRVGG-- 178
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG L D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 --GPLGEGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 311 TGKGMI 316
TGKG +
Sbjct: 234 TGKGPV 239
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEVLSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 125/208 (60%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DP F EL
Sbjct: 160 ILAVLGFQVVLMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGLADDPATFAEL 213
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 214 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 241
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 137/230 (59%), Gaps = 11/230 (4%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N ++ A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NELVRKTGGAGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 266
LDYLG P +L +Q ++ I Q +LM E R G PLG L D YP
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DPIYP 190
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 191 GGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 142/244 (58%), Gaps = 19/244 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K+ A A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRITMRKSV--------AKAKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG-- 180
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 181 --GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235
Query: 311 TGKG 314
TGKG
Sbjct: 236 TGKG 239
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 125/212 (58%), Gaps = 8/212 (3%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKEIKNGRLAM + F++QA TGKG +
Sbjct: 210 ELKVKEIKNGRLAMFSMFRFFVQAIVTGKGSL 241
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 162 FQIVLMGLVEGFRINGLPDVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKG 237
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 136/234 (58%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 21 QQNELVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYR 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 6 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 65
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 66 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 124
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG D
Sbjct: 125 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--D 176
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 177 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 227
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 166 FQVVLMGLVEGYRINGLPGVG------EGNDLYPGGPYFDPLGLADDPVTFAELKVKEIK 219
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 220 NGRLAMFSMFGFFVQAIVTGKG 241
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 127/202 (62%), Gaps = 15/202 (7%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG RP++LGP PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 38 WYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAML 97
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG +VPE+LD G H+ W+ G + + L YLGIPGL A S ++ I Q
Sbjct: 98 GALGCVVPELLD--GTNHI---AWFNAGATIFSDDGLQYLGIPGLINAKS--IVATLIVQ 150
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G P G L D YPGG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 151 VILMSYVEGYRVNG----GPAGTGL--DAVYPGGS-FDPLGLADDPDTFSELKVKEIKNG 203
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM++ GF+IQA TG+G I
Sbjct: 204 RLAMLSMFGFFIQAIVTGEGPI 225
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 137/230 (59%), Gaps = 11/230 (4%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N ++ A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NELVRKTGGAGKGRTTMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 266
LDYLG P +L +Q ++ I Q +LM E R G PLG L D YP
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DPIYP 190
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 191 GGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGWGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 166 FQVVLMGLVEGYRINGLPGVG------EGNDLYPGGPYFDPLGLADDPVTFAELKVKEIK 219
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 220 NGRLAMFSMFGFFVQAIVTGKG 241
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 128/207 (61%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILERNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 163 TQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVILMGAIEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLAEDPE 206
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 47 NELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 107 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKG 240
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 137/235 (58%), Gaps = 16/235 (6%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L+NR +K + ++ +S+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 17 LKNRDELVRKVGVVGGRVSMRRTVKSAPQSIWYGADRPKYLGPFSEQTPSYLTGEFPGDY 76
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGV-KFGEAVWFKAGAQ 135
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPG 261
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 136 IFSEGGLDYLGNP--NLVHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL------ 187
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG +
Sbjct: 188 ---YPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 238
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 141/244 (57%), Gaps = 19/244 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG-- 180
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
PLG + D YPGG+ FDPL + DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 181 --GPLGEVV--DPLYPGGS-FDPLGPADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235
Query: 311 TGKG 314
TGKG
Sbjct: 236 TGKG 239
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 22 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 81
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG +L
Sbjct: 82 LELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGAQIFQEGGLDYLG--NSNLVH 138
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
+Q ++ I Q LLM E R G PLG L D YPGG+ FDPL L+ DP F
Sbjct: 139 AQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--DKLYPGGS-FDPLGLADDPDTF 191
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 192 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 222
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 135/234 (57%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q+ L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QHNELVRKVGMSQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP +F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --YPGGA-FDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 125/210 (59%), Gaps = 8/210 (3%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE GDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 284
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
EL+VKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 ELRVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 125/210 (59%), Gaps = 12/210 (5%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 4 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 63
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 64 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 121
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFE 284
++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV F
Sbjct: 122 ILAVLGFQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFA 173
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 174 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 203
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFTKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLAEDPE 206
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 136/230 (59%), Gaps = 11/230 (4%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N + A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NEFVRKTGGAGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 266
LDYLG P +L +Q ++ I Q +LM E R G PLG L D YP
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DPIYP 190
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 191 GGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 144/243 (59%), Gaps = 20/243 (8%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK ++ S EL+ N + +KAA + + A + S WYG +R ++LGP +
Sbjct: 18 AVK-LSPSSASELMGNGRVSMRKAATK---------KVAPSGSPWYGPDRVKYLGPFSGE 67
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 68 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV- 126
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 127 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG--- 181
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 182 -GPLGEVV--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 237
Query: 312 GKG 314
GKG
Sbjct: 238 GKG 240
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 121/202 (59%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 43 SDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQSILAVLG 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DPV ELKVKEIK
Sbjct: 161 FQVVLMGLVESFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTLAELKVKEIK 214
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKG 236
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 141/255 (55%), Gaps = 18/255 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGE 119
A + S+ F +S E+ N + +K + A+ A + S WYG
Sbjct: 3 ATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTK--------AKPASSSSPWYGP 54
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+R ++LGP + PSYLTGE P DYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 55 DRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+ PE+ G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 115 VFPELFARNG-IKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMG 171
Query: 240 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299
E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM
Sbjct: 172 AVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 300 AWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 225 SMFGFFVQAIVTGKG 239
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 145/258 (56%), Gaps = 24/258 (9%)
Query: 59 LAGVLVFSAIPFTAVKAI--ANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLW 116
+A +V S+ P A KA+ A SP EL+ N + +K SS S W
Sbjct: 1 MAATMVLSS-PSLAGKAVKLAPSPASELMGNGRISMRKTGKSVSSG-----------SPW 48
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGA
Sbjct: 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P L A Q ++ I Q +
Sbjct: 109 LGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWASQVV 165
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRL
Sbjct: 166 LMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFSELKVKEIKNGRL 218
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM + GF++QA TGKG
Sbjct: 219 AMFSMFGFFVQAIVTGKG 236
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 139/246 (56%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K A A A+ + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNLPSSALFGEARVTMRKTA--------AKAKPVPSGSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 180 ----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 267
LDYLG P +L +Q ++ I + +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATRVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG +
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 136/225 (60%), Gaps = 12/225 (5%)
Query: 94 KAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGL
Sbjct: 20 RAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 79
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 211
S DP F + E++H+RWAMLGALG + PE+L G E VW++ G L
Sbjct: 80 SADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGL 138
Query: 212 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271
DYLG P +L +Q ++ I CQ +LM E R G PLG L D YPGGA F
Sbjct: 139 DYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-F 189
Query: 272 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 190 DPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGIVFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 216 NGRLAMFSVFGFFVQAIVTGKGPI 239
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 140/247 (56%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KAI P E+L + +K A + + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAIKLGPTASEILSEGRVTMRKTAGK--------PKNVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K A+ + S WYG +R ++LGP + PSYLT E PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPVSSSSPWYGPDRVKYLGPFSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 130/213 (61%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 122 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 172
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 173 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 161 CQVVLMGFIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPDTAAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG +
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPV 237
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 122/202 (60%), Gaps = 8/202 (3%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 3 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 120
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 121 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIK 174
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 175 NGRLAMFSMFGFFVQAIVTGKG 196
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 122/201 (60%), Gaps = 8/201 (3%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
LWYG +R ++LGP PSYLTGE PG+YG+D AGLS DP AF K E++H RWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGA G + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGF 118
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIKN
Sbjct: 119 QVILMGLVEGLRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 172
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 173 GRLAMFSMFGFFVQAIVTGKG 193
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+ G E VW + G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWLKAGSQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ LLM E R G PLG+ + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVLLMGAVEGYRVAG----GPLGVVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE KNGRLAM + GF+IQA TGKG
Sbjct: 207 AFAELKVKETKNGRLAMFSMFGFFIQAIVTGKG 239
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 122/208 (58%), Gaps = 8/208 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E+
Sbjct: 43 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 102
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 103 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 160
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ + Q LLM E R G+ + G+ YPG FDPL L+ DP F EL
Sbjct: 161 ILAVLGFQVLLMGLVEGFRINGLPGVG------EGNNLYPGDQYFDPLGLADDPATFAEL 214
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 215 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 139/236 (58%), Gaps = 14/236 (5%)
Query: 81 LGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGEL 140
LG + N + E + + +SK ++ + S WYG +R ++LGP + PSYLTGE
Sbjct: 20 LGSSVSNIVGEGRITMRKTASK----SKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF 75
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 76 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFK 134
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLP 260
G LDYLG P L A Q ++ I Q +LM E R G PLG
Sbjct: 135 AGAQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRVAG----GPLGEIT- 187
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 188 -DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 136/227 (59%), Gaps = 12/227 (5%)
Query: 92 TKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 18 VSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 77
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 78 GLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEG 136
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
LDYLG P +L +Q ++ I CQ +LM E R G PLG L D YPGGA
Sbjct: 137 GLDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA 188
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 189 -FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 48 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 107
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA--QSILA 164
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 165 IWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPI 244
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 146/254 (57%), Gaps = 19/254 (7%)
Query: 59 LAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
+A + S+ F A KA+ N P + + +K A++ A+Q + S WYG
Sbjct: 2 VATTMSLSSSSF-AGKAVKNLPSPAHIGEARVTMRKTAVK--------AKQVSSGSPWYG 52
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 53 SDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 112
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 113 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLM 169
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM
Sbjct: 170 GAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
Query: 299 VAWLGFYIQAAFTG 312
+ GF++QA TG
Sbjct: 223 FSMFGFFVQAIVTG 236
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPL L+ DP +F ELKVK
Sbjct: 163 TQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDSFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 137/229 (59%), Gaps = 19/229 (8%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 267
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T KG +
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTDKGPV 239
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 133/220 (60%), Gaps = 12/220 (5%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ I Q +LM E R G PLG L D YPGGA FDPL L
Sbjct: 147 P--NLVHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGL 197
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ DP F ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPL L+ DP +F ELKVK
Sbjct: 163 TQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDSFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 140/247 (56%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KAI P E+L + +K A + + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAIKLGPTASEILGEGRVTMRKTAGK--------PKNVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/199 (51%), Positives = 124/199 (62%), Gaps = 10/199 (5%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLG
Sbjct: 44 WYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 103
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ
Sbjct: 104 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQV 160
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGR
Sbjct: 161 VLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGR 213
Query: 296 LAMVAWLGFYIQAAFTGKG 314
LAM + GF++QA TGKG
Sbjct: 214 LAMFSMFGFFVQAIVTGKG 232
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 140/248 (56%), Gaps = 19/248 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K + +A + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVPSSALFGEARVTMRKTGAKP---------KATSGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 122 GV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG 178
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 ----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
Query: 309 AFTGKGMI 316
TG G I
Sbjct: 232 IVTGNGPI 239
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 140/246 (56%), Gaps = 21/246 (8%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ +P E++ N + +K + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAVKLNPFSEIMGNGCISMRKTT-----------KPVPSGSPWYGPDRVKYLGPF 59
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 60 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 120 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWATQVVLMGAVEGYRIAG 176
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + LGF++QA
Sbjct: 177 ----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQA 229
Query: 309 AFTGKG 314
TGKG
Sbjct: 230 IVTGKG 235
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/203 (52%), Positives = 126/203 (62%), Gaps = 10/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 25 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 84
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 85 LGALGCVFPEVLSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAV 141
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIKN
Sbjct: 142 QVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKN 194
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 195 GRLAMFSMFGFFVQAIVTGKGPI 217
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 102
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELK 212
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 133/220 (60%), Gaps = 12/220 (5%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFARNRELELIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ I Q +LM E R G PLG L D YPGGA FDPL L
Sbjct: 147 P--NLVHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGL 197
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ DP F ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 143/245 (58%), Gaps = 13/245 (5%)
Query: 71 TAVKAIANSPL-GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIP 129
TA A+++S G+ ++N L A K A A+ + S WYG +R +LGP+
Sbjct: 3 TATMALSSSTFAGKAVKN--LPALGEARITMRKTVAKAKPVSSGSPWYGSDRVLYLGPLS 60
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 61 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 120
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 121 V-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVAG- 176
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 177 ---GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 230
Query: 310 FTGKG 314
TGKG
Sbjct: 231 VTGKG 235
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 140/247 (56%), Gaps = 21/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K A A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSAPELMGNGRVSMRKTA----------AKNVSSGSPWYGPDRVKYLGP 60
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I Q +LM E R
Sbjct: 121 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWASQVVLMGAVEGYRVA 177
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 178 G----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 231 AIVTGKG 237
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 145/256 (56%), Gaps = 20/256 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K + A+ + S WYG
Sbjct: 3 AATMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTVTK--------AKPLSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G PLG + D YPGG+ FDPL L++DP AF ELKVK IKNGRLAM
Sbjct: 171 GAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAM 223
Query: 299 VAWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 FSMFGFFVQAIVTGKG 239
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 33 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 92
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 93 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 150
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q LLM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 151 -QSILAIWATQVLLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 202
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 203 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 235
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 131/227 (57%), Gaps = 11/227 (4%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L + AA++ S + A + R WYG RP++LGP PSYL GE PGDYG+D A
Sbjct: 5 LTQRLAAVKPSGR--ATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTA 62
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 63 GLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEG 122
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
LDYLG P L A Q ++ + + Q LM E R G A E L D YPG A
Sbjct: 123 GLDYLGNPSLIHA--QSIVAVLLTQLTLMGLIEGYRVNGGPAGEGL------DALYPGEA 174
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELKVKE+KNGRLAMV+ GF++Q T KG I
Sbjct: 175 -FDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPI 220
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 43 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 103 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 159
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG L D YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 160 CQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTAAELKVKELK 212
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPI 236
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 132/217 (60%), Gaps = 18/217 (8%)
Query: 105 ALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
+ R R+ ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 5 TMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 64
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 65 ELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLI 121
Query: 223 GSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
+Q ++ I Q +LM E R G E L+PL YPGGA FDPL L+ D
Sbjct: 122 HAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADD 171
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 172 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 208
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPI 228
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 132/222 (59%), Gaps = 17/222 (7%)
Query: 100 SSKFKALARQARNESL-------WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
SSK + R + +S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 24 SSKVRGDGRISMRKSFAKPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 83
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 84 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLD 142
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG PGL A Q ++ I CQ +LM E R G PLG + D YPGG+ FD
Sbjct: 143 YLGNPGLVHA--QSILAIWACQVILMGAVEGYRIGG----GPLGEVI--DPLYPGGS-FD 193
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 194 PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPI 228
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 126/208 (60%), Gaps = 10/208 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPI 228
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 126/208 (60%), Gaps = 10/208 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+ G E VW++ G LDYLG P L A Q
Sbjct: 101 IHCRWAMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 157
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF EL
Sbjct: 158 ILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAEL 210
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VK +P GE R+ K AA S + S WYG +R +LG
Sbjct: 11 AMAGTPVKVSRATPFGE---GRITMRKTAAKPKVSA---------SGSPWYGSDRVLYLG 58
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 59 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 119 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRV 175
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 176 AG----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 228
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 229 QAIVTGKG 236
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 143/249 (57%), Gaps = 21/249 (8%)
Query: 71 TAVKAIANSPLGELLQ-----NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWL 125
T+ +++S +G+ +Q N ++ + ++ + RQ + S WYG +R ++L
Sbjct: 3 TSTMTLSSSFIGKAVQLAPTGNDLMGNGRVTMRKT------GRQVSSGSPWYGPDRVKYL 56
Query: 126 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
GP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 57 GPFSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 116
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 117 ARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYR 173
Query: 246 YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGR AM + GF+
Sbjct: 174 IAG----GPLGKVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFF 226
Query: 306 IQAAFTGKG 314
+QA TGKG
Sbjct: 227 VQAIVTGKG 235
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VK +P GE R+ K AA S + S WYG +R +LG
Sbjct: 12 AMAGTPVKVSRATPFGE---GRITMRKTAAKPKVSA---------SGSPWYGSDRVLYLG 59
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 120 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRV 176
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 177 AG----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 230 QAIVTGKG 237
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 126/203 (62%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G EPLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---EPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPI 241
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 143/255 (56%), Gaps = 19/255 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGE 119
A + S+ F A KA+ E+ +N + +K + A+ + S WYG
Sbjct: 3 AATMALSSSSF-AGKAVNVPSSSEITRNGKVTMRKTVTK--------AKPVSSGSPWYGP 53
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW MLGALG
Sbjct: 54 DRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGC 113
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+ PE+ G E VW++ G + LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 VFPELFARNGV-KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWACQVVLMG 170
Query: 240 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299
E R G PLG + D YPGG+ FDPL L+ DP AF EL+VKEIKNGRLAM
Sbjct: 171 AVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAELEVKEIKNGRLAMF 223
Query: 300 AWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 SMFGFFVQAIVTGKG 238
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 126/208 (60%), Gaps = 10/208 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KVKEIKNGRLAM + GF++QA TGKG
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 125/213 (58%), Gaps = 10/213 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 28 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 87
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LELIHARWAMLGALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 145
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ Q +LM E R G A E L PG+ FDPL L+ DP F
Sbjct: 146 -QNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTF 197
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 198 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 230
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 34 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 93
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 94 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHA- 151
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 152 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 203
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 139/242 (57%), Gaps = 22/242 (9%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
VK +SP EL N + +K+A + S + S WYG +R ++LGP +
Sbjct: 18 VKLTPSSP--ELFGNSRVTMRKSATKSVS----------SGSPWYGPDRVKYLGPFSGEP 65
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 124
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWASQVVLMGAVEGYRIAG---- 178
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TG
Sbjct: 179 GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 313 KG 314
KG
Sbjct: 236 KG 237
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 125/206 (60%), Gaps = 16/206 (7%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAT 163
Query: 234 QALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVKE
Sbjct: 164 QVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDAFAELKVKE 213
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + GF++QA GKG I
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVPGKGPI 239
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 125 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 177
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM + GF++QA TGKG
Sbjct: 178 VKEIKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 137/242 (56%), Gaps = 19/242 (7%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
V+ AN EL R K A + + A + S WYG +R ++LGP +
Sbjct: 18 VETSANPSSQELGGARFTMRKSATTK---------KVASSGSPWYGPDRVKYLGPFSGES 68
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 127
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRIAG---- 181
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TG
Sbjct: 182 GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 238
Query: 313 KG 314
KG
Sbjct: 239 KG 240
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 11/210 (5%)
Query: 107 ARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+RQ S+ +YG +R +WLGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 21 SRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREI 80
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVE-PVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L GA E VW++ G S + L+YLG P L A
Sbjct: 81 EVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHA- 139
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ + + Q ++M E RY G +E GD YPGGA FDPL L+ DP
Sbjct: 140 -QSIVAVLLTQLVIMGAAEAYRYAGEGPVE-----TSGDSLYPGGA-FDPLGLADDPDTL 192
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
ELKVKE+KNGRLAM + GF++QA TGK
Sbjct: 193 AELKVKELKNGRLAMFSMFGFFVQALITGK 222
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 134/223 (60%), Gaps = 11/223 (4%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K ++ A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTTKKVSASA-SPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 96
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 97 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 155
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 156 LGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 206
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 207 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 249
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLA + GF++QA TGKG +
Sbjct: 216 NGRLATFSMFGFFVQAIVTGKGPV 239
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 136/236 (57%), Gaps = 20/236 (8%)
Query: 89 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 143
M K+A++ S + +R AR WYG +RP++LGP D PSYLTGE PGD
Sbjct: 1 MAAIAKSAVRSSVRPTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGD 60
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 120
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLP 260
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 QIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL----- 173
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 174 ----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 224
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 205
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVI 97
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 155 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 207
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++QA TGKG
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 124/203 (61%), Gaps = 10/203 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARW
Sbjct: 45 SDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 104
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 105 AMLGALGCVTPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 161
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
Q +LM E R G PLG D YPGG+ FDPL L+ DP F ELKVKEI
Sbjct: 162 ASQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTFAELKVKEI 214
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAM + GF++QA TGKG
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKG 237
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 126/206 (61%), Gaps = 10/206 (4%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM + GF++QA TGKG
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 138/248 (55%), Gaps = 14/248 (5%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A P T P E + + A++ + + A S WYG +R ++LG
Sbjct: 2 AAPSTFAGQTGLKPQNEFVARNASNGSRVAMRKTGR----ASSVGGGSPWYGPDRVKYLG 57
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 58 PFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 117
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G E VW++ G + LDYLG P L A Q ++ I Q +LM E R
Sbjct: 118 KNG-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWASQVILMGAVEGYRI 174
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G PLG D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++
Sbjct: 175 AG----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV 227
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 228 QAIVTGKG 235
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 126/206 (61%), Gaps = 10/206 (4%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM + GF++QA TGKG
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 139/240 (57%), Gaps = 13/240 (5%)
Query: 75 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS 134
A+A P+ ++ L K ++ + K +A S WYG +R ++LGP + PS
Sbjct: 12 ALAGKPVKLTPSSQELGVAKFTMRKGATTKKVASSG---SPWYGPDRVKYLGPFSGEPPS 68
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194
YLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 69 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFG 127
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 254
E VW++ G LDYLG P L A Q ++ I Q +LM E R G P
Sbjct: 128 EAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRIAG----GP 181
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 182 LGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 126/206 (61%), Gaps = 10/206 (4%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM + GF++QA TGKG
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
RQ+ WYG +R +++GP PSYLTGE PGDYG+D AGLS +P F K E++
Sbjct: 44 RQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVI 103
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
HARWAMLG +G +VPE+L+ G + E VW++ G + E L+YLG P L +Q +
Sbjct: 104 HARWAMLGTVGCIVPELLERNGV-KIGEAVWFKAGSQIFRDEGLNYLGDP--KLIHAQNI 160
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ + Q +LM E R G PLG P D YPGG FDPL+L+ DP F LK
Sbjct: 161 LAVLAAQVILMGAIEGYRISG----GPLG--EPTDPLYPGGN-FDPLHLADDPEEFAILK 213
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM A LGFY+QA TGKG
Sbjct: 214 VKEIKNGRLAMFAMLGFYVQAIVTGKG 240
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 142/243 (58%), Gaps = 20/243 (8%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVKA ++ ELL N + +K A A + A + S WYG +R ++LGP +
Sbjct: 4 AVKAAPSN--SELLGNGRVSMRKTA--------APKKVAPSGSPWYGPDRVKYLGPFSGE 53
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 54 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV- 112
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 113 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRIAG--- 167
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 168 -GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 223
Query: 312 GKG 314
GKG
Sbjct: 224 GKG 226
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 203
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 204 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 127/207 (61%), Gaps = 16/207 (7%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D A +S DP F K E++H RWA
Sbjct: 7 ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWA 66
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 67 MLGALGCVFPELLVKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 123
Query: 233 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
CQ +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 124 CQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 173
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM + GF++QA TGKG I
Sbjct: 174 EIKNGRLAMFSMFGFFVQAIVTGKGPI 200
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ I Q +LM E R G PLG L D YP GA FDPL L
Sbjct: 147 P--NLVHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPSGA-FDPLGL 197
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ DP F ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 126/204 (61%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
N RLAM + GF++QA TGKG I
Sbjct: 214 NSRLAMFSMFGFFVQAIVTGKGPI 237
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 137/237 (57%), Gaps = 21/237 (8%)
Query: 89 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 142
M K+AL+ S + +A +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAVVAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFL 259
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---- 174
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 175 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFAKNRELELIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ I Q +LM E R G PLG L D YPGGA FDPL L
Sbjct: 147 P--NLVHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGL 197
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ DP F ELKVKE+KNGRLAM + GF++QA GKG I
Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVRGKGPI 237
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 155 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 207
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++QA TGKG
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 126/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 160 IWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIKNGRLAM + GF++QA TGKG
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 133/227 (58%), Gaps = 10/227 (4%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L K A + + A + + + S+WYG +RP +LGP PSYLTGE PGDYG+D A
Sbjct: 24 LSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTA 83
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F K E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEG 142
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
LDYLG P L A Q ++ I Q +LM E R G PLG D YPGG+
Sbjct: 143 GLDYLGNPSLVHA--QSILAIWAFQVVLMGAVEGYRVAG----GPLGEVE--DPLYPGGS 194
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 195 -FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 38 KAAGKVADSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 97
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 155
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 156 -QSILAIWATQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 145/256 (56%), Gaps = 14/256 (5%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K+ A + + S WYG +
Sbjct: 9 GSCAFAGGQLSSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSFA--SASPSPWYGPD 64
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 65 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 124
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGA 181
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +
Sbjct: 182 VEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFS 234
Query: 301 WLGFYIQAAFTGKGMI 316
GF++QA TGKG I
Sbjct: 235 MFGFFVQAIVTGKGPI 250
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 362 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 421
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 422 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 478
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+KNG
Sbjct: 479 VVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELKNG 531
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM A GFY+QA TG+G +
Sbjct: 532 RLAMFAMFGFYVQALVTGEGPV 553
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 602 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 661
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 662 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 718
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+KNG
Sbjct: 719 VVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELKNG 771
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM A GFY+QA TG+G +
Sbjct: 772 RLAMFAMFGFYVQALVTGEGPV 793
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 122 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 181
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 182 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 238
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+KNG
Sbjct: 239 VVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELKNG 291
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM A GFY+QA TG+G +
Sbjct: 292 RLAMFAMFGFYVQALVTGEGPV 313
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D YPGGA FDPL L+ DP F ELKVKE+KNGRLAM A GFY+QA TG+G +
Sbjct: 20 DALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPV 73
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 18/186 (9%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GL+ DP F + E+ + R AM G V ++ G A H+ +P
Sbjct: 268 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPF--- 324
Query: 201 VGYSKLQGETLDYLG----IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
+ G T Y+ P A + A + GP ++ G +
Sbjct: 325 ----NVNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTP 380
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+L G+ +PG +D L+ DP+ F + + E+ + R AM+ LG A G+
Sbjct: 381 SYLTGE--FPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVP 438
Query: 317 LVAALW 322
L +W
Sbjct: 439 LAEPVW 444
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 18/186 (9%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GL+ DP F + E+ + R AM G V ++ G A H+ +P
Sbjct: 508 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPF--- 564
Query: 201 VGYSKLQGETLDYLG----IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
+ G T Y+ P A + A + GP ++ G +
Sbjct: 565 ----NVNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTP 620
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+L G+ +PG +D L+ DP+ F + + E+ + R AM+ LG A G+
Sbjct: 621 SYLTGE--FPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVP 678
Query: 317 LVAALW 322
L +W
Sbjct: 679 LAEPVW 684
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 18/186 (9%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GL+ DP F + E+ + R AM G V ++ G A H+ +P
Sbjct: 28 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPF--- 84
Query: 201 VGYSKLQGETLDYLG----IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
+ G T Y+ P A + A + GP ++ G +
Sbjct: 85 ----NVNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTP 140
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+L G+ +PG +D L+ DP+ F + + E+ + R AM+ LG A G+
Sbjct: 141 SYLTGE--FPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVP 198
Query: 317 LVAALW 322
L +W
Sbjct: 199 LAEPVW 204
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCVTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPI 228
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 137/246 (55%), Gaps = 14/246 (5%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P T P E + + A++ + K A S WYG +R ++LGP
Sbjct: 13 PSTFAGQTGLKPQNEFVARNASNGSRIAMRKTGK----ASSVGGGSPWYGPDRVKYLGPF 68
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 69 SGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKN 128
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G + LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 129 G-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWASQVILMGAVEGYRIAG 185
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 186 ----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQA 238
Query: 309 AFTGKG 314
TGKG
Sbjct: 239 IVTGKG 244
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 139/239 (58%), Gaps = 13/239 (5%)
Query: 76 IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSY 135
+A P+ ++ L + ++ S+ K +A S WYG +R ++LGP + PSY
Sbjct: 13 LAGKPVKLTPSSQELGAARFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSY 69
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E
Sbjct: 70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGE 128
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
VW++ G LDYLG P L A Q ++ I Q +LM E R G PL
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRIAG----GPL 182
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 183 GEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 139/247 (56%), Gaps = 19/247 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E+ N +K + A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKFSPSSSEITGNGKATMRKTVTK--------AKPVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D A LS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVA 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 180 G----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 233 AIVTGKG 239
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 9/213 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+A + R + +YG +R ++LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 16 RATRQVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSADPETFSRYRE 75
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L GA + E VW++ G Q LDYLG +L
Sbjct: 76 LEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLG--NANLVH 133
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
+Q ++ + + Q +LM E R G A E D YPG A FDPL L+ DP
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNGGPAGEIT------DPIYPGEA-FDPLGLADDPDTL 186
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKEIKNGRLAMV+ GF+IQA TGKG I
Sbjct: 187 AELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPI 219
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 139/246 (56%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + +P + L +KAA + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLTPSSQELGAARFTMRKAATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 180 ----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 145/256 (56%), Gaps = 14/256 (5%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K+ A + + S WYG +
Sbjct: 4 GSCAFAGGQLSSLKPHTNQLLG--VGAGIHGESRVTMRKSATKKSFA--SASPSPWYGPD 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGA 176
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +
Sbjct: 177 VEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFS 229
Query: 301 WLGFYIQAAFTGKGMI 316
GF++QA TGKG I
Sbjct: 230 MFGFFVQAIVTGKGPI 245
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 140/247 (56%), Gaps = 22/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K + S S WYG +R ++LGP
Sbjct: 11 PAFAGKAVKLSPSAPELMGNGRVNMRKTFNKPPSG-----------SPWYGPDRVKYLGP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIA 176
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 177 G----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 229
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 230 AIVTGKG 236
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 125/204 (61%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G E L DI YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 161 VQVVLMGFIEGYRVGGGPLDEGL------DIIYPGGA-FDPLGLADDPDTAAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG +
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPV 237
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
+S K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F
Sbjct: 31 ASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 90
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+ E++H+RWAMLGALG + PE L G E VW++ G LDYLG P L
Sbjct: 91 RNRELEVIHSRWAMLGALGIVFPEPLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSL 149
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ D
Sbjct: 150 IHA--QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPTYPGGS-FDPLGLADD 200
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 201 PEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKG 235
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGSVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 121 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 171
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 109 LGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAC 165
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 166 QVVLMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKG 239
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 131/218 (60%), Gaps = 9/218 (4%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268
+ L+YLG P L A Q V++ + +M E RY G PLG L D YPGG
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEGYRYGG---GWPLGDDL--DRLYPGG 297
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
FDPL L+ DP AF ELKVKE+KNGRLAMVA LGFY+
Sbjct: 298 P-FDPLGLANDPDAFAELKVKEVKNGRLAMVAMLGFYV 334
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 125/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 45 AASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 104
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 105 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 161
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 162 IWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVK 214
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIKNGRLAM + GF++QA TGKG
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 139 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 198
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 199 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 255
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+KNG
Sbjct: 256 VVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELKNG 308
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM A GFY+QA TG+G +
Sbjct: 309 RLAMFAMFGFYVQALVTGEGPV 330
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 379 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 438
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 439 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 495
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+KNG
Sbjct: 496 VVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELKNG 548
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM A GFY+QA TG+G +
Sbjct: 549 RLAMFAMFGFYVQALVTGEGPV 570
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
+L +Q ++ I Q +LM E R G PLG D YPGGA FDPL L+ D
Sbjct: 1 NLVHAQSILAILAFQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADD 53
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P F ELKVKE+KNGRLAM A GFY+QA TG+G +
Sbjct: 54 PETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPV 90
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 18/186 (9%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GL+ DP F + E+ + R AM G V ++ G A H+ +P
Sbjct: 45 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPF--- 101
Query: 201 VGYSKLQGETLDYLG----IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
+ G T Y+ P A + A + GP ++ G +
Sbjct: 102 ----NVNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTP 157
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+L G+ +PG +D L+ DP+ F + + E+ + R AM+ LG A G+
Sbjct: 158 SYLTGE--FPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVP 215
Query: 317 LVAALW 322
L +W
Sbjct: 216 LAEPVW 221
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 18/186 (9%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GL+ DP F + E+ + R AM G V ++ G A H+ +P
Sbjct: 285 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPF--- 341
Query: 201 VGYSKLQGETLDYLG----IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
+ G T Y+ P A + A + GP ++ G +
Sbjct: 342 ----NVNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTP 397
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+L G+ +PG +D L+ DP+ F + + E+ + R AM+ LG A G+
Sbjct: 398 SYLTGE--FPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVP 455
Query: 317 LVAALW 322
L +W
Sbjct: 456 LAEPVW 461
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 153
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 205 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 203
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 204 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 146/256 (57%), Gaps = 14/256 (5%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K++A + + S WYG +
Sbjct: 4 GSCAFAGGQLSSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSVA--SASPSPWYGPD 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGA 176
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +
Sbjct: 177 VEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFS 229
Query: 301 WLGFYIQAAFTGKGMI 316
GF++QA TGKG I
Sbjct: 230 MFGFFVQAIVTGKGPI 245
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 130/213 (61%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+ + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELELIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 122 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 172
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 173 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 125/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 56 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 116 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 172
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 173 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 225
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 226 KNGRLAMFSMFGFFVQAIVTGKGPI 250
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 130/213 (61%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 30 KTAAKPKPAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 89
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 90 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 148
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 149 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 199
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 200 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 232
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 138/246 (56%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + SP + L +K+A + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLSPSSQELGASRFTMRKSATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVVLMGAVEGYRIAG 179
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 180 ----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 144/256 (56%), Gaps = 20/256 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N +K A A A+ + S WYG
Sbjct: 3 AATMALSSSTF-AGKAVKLSPSSSEITGNGRFTMRKTA--------AKAKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWA+L LG
Sbjct: 54 PDRVKYLGPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++VG LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLSRNGV-KFGEAVWFKVGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM
Sbjct: 171 GAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
Query: 299 VAWLGFYIQAAFTGKG 314
+ GF++QA TGKG
Sbjct: 224 FSMFGFFVQAIVTGKG 239
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 36 KTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGSVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWASQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 146/256 (57%), Gaps = 14/256 (5%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K++A + + S WYG +
Sbjct: 4 GSCAFAGGQXSSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSVA--SASPSPWYGPD 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGA 176
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +
Sbjct: 177 VEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFS 229
Query: 301 WLGFYIQAAFTGKGMI 316
GF++QA TGKG I
Sbjct: 230 MFGFFVQAIVTGKGPI 245
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 126/204 (61%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + ++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRIGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 132/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 42 RKAATKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 89
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 90 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 148
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 149 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPG 200
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 201 GS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 64
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 65 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 121
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF ELK
Sbjct: 122 LAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELK 174
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++QA TGKG
Sbjct: 175 VKELKNGRLAMFSMFGFFVQAIVTGKG 201
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 39 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 98
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 99 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 157
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 158 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 208
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 209 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 241
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 126/204 (61%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 132/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 42 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 89
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 90 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 148
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 149 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPG 200
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 201 GS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 135/235 (57%), Gaps = 14/235 (5%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELP 141
LL N + + + + S K+ +Q S+ WYG +RP++LGP PSYL GE P
Sbjct: 5 LLSNSFVVSARRTV---SSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYP 61
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F +Y E++H+RWA+LG LG + PE+L+ G E VW++
Sbjct: 62 GDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKA 121
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
G + L+YLG P L A Q +I Q +L+ E R G A E
Sbjct: 122 GAQIFSADGLNYLGNPSLVHA--QSIIATVATQVILLGLAEGYRVNGGPAGEIT------ 173
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D YPGGA FDPL L+ DP F ELKVKEIKNGRLA A LGF++QA TGKG I
Sbjct: 174 DPLYPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPI 227
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 133/224 (59%), Gaps = 13/224 (5%)
Query: 92 TKKAALQDSSKFKALARQAR-NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
++K AL+D +++ QA+ + LWYG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 24 SRKNALRD----RSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAG 79
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP AF + E++H RWAMLGALG + PEVL E VW++ G
Sbjct: 80 LSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGG 139
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P +L +Q ++ I CQ +LM E R G+ + GD+ YPGG
Sbjct: 140 LDYLGNP--NLVHAQSILAIWACQVILMGLVEGYRINGLPDVGE-----GGDL-YPGGQY 191
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL + DP ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 192 FDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 29 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 88
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 89 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 147
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 148 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 198
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 199 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 231
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 125/202 (61%), Gaps = 11/202 (5%)
Query: 112 NESL--WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
NE L +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HA
Sbjct: 40 NEKLGAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHA 99
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G + EPVW++ G Q LDYLG GL A Q ++
Sbjct: 100 RWAMLGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNAGLIHA--QSILA 156
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVK
Sbjct: 157 TLAVQVILMGAIEGYRVNGGPAGEGL------DKLHPGGQFFDPLGLAEDPDAFAELKVK 210
Query: 290 EIKNGRLAMVAWLGFYIQAAFT 311
EIKNGRLAM + GF++QA T
Sbjct: 211 EIKNGRLAMFSMFGFFVQAIVT 232
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 154
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 139/246 (56%), Gaps = 20/246 (8%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A +AI SP L + +KAA ++ + S WYG +R ++LGP
Sbjct: 11 PSLAGQAIKLSPSTPELSGGRISMRKAA----------SKSVSSGSPWYGPDRVKYLGPF 60
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 121 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWATQVILMGAVEGYRIAG 177
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 178 ----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQA 230
Query: 309 AFTGKG 314
TGKG
Sbjct: 231 IVTGKG 236
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 132/221 (59%), Gaps = 7/221 (3%)
Query: 96 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 371 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 156 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 216 IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLN 275
P L A Q V++ + +M E RY G + G L D YPGG FDPL
Sbjct: 491 NPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLG 543
Query: 276 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 544 LANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 584
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 125/211 (59%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y
Sbjct: 143 SGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYR 202
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
+ E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L A
Sbjct: 203 DAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 262
Query: 223 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
+ ++ + + + E R G PLG D +YPGG +FDPL LSKDP A
Sbjct: 263 SNL--LLTLVLELVFFFAAETWREAGE---GPLGKAQ--DKSYPGG-VFDPLGLSKDPAA 314
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
F E KVKE+KNGRLAM+A LG ++QA TG+
Sbjct: 315 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQ 345
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256
VW++ G + L+YLG P L A Q V++ + +M E RY G + G
Sbjct: 11 VWYKAGAQIFSADGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFG 66
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L D YPGG FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 67 REL--DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 123
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 124/204 (60%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 59 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 119 MLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWA 175
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVKEIK
Sbjct: 176 CQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVKEIK 228
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPI 252
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 139/246 (56%), Gaps = 19/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + + +K + + + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNMPSSALFGDARMTMRKTGAKP---------KVASGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE GDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 122 GV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG 178
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 ----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
Query: 309 AFTGKG 314
TGKG
Sbjct: 232 IVTGKG 237
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 126/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 173 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 99
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 100 RELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 156
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP
Sbjct: 157 VHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPE 209
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 210 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDY +D AGLS DP
Sbjct: 18 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPE 77
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 78 TFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 136
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +L +Q ++ I Q +LM E R G PLG L D YPGGA FDPL L
Sbjct: 137 P--NLVHAQSILAIWAVQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGL 187
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ DP F ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 188 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 227
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 122/206 (59%), Gaps = 7/206 (3%)
Query: 112 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 237 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 296
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 354
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
Q LLM E R G A G L D YPGG FDPL L+ DP F ELKVKE
Sbjct: 355 LATQVLLMGAVEAYR-AGNTAPGQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKE 410
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAMVA LGFY QA TG+G +
Sbjct: 411 IKNGRLAMVAMLGFYAQAIVTGEGPV 436
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 112/195 (57%), Gaps = 8/195 (4%)
Query: 120 ERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWAMLGALG
Sbjct: 2 DRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALG 61
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE L + EPVW++ G LDYLG L +Q +++I Q LLM
Sbjct: 62 VVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILGTQVLLM 119
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R L G L D YPGG FDPL L+ DP ELKVKEIKNGRLAM
Sbjct: 120 GAAEAYRTG--NGLGNFGKDL--DSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAM 174
Query: 299 VAWLGFYIQAAFTGK 313
A GFY+QA TG+
Sbjct: 175 FAMFGFYVQAIVTGE 189
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 9 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 68
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 69 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 125
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 126 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 178
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++QA TGKG
Sbjct: 179 VKELKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 121 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 171
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 136/238 (57%), Gaps = 9/238 (3%)
Query: 81 LGELLQNRMLETKK--AALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTG 138
L + +N + + A L S + A ++ N S WYG +R +WLGP+ + PSYLTG
Sbjct: 97 LTDPFENNLFQLTSGFAMLATSGRKAKAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTG 156
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
ELPGDYG+D AGL DP +Y E++HARWAMLGALG + PE+L G VW
Sbjct: 157 ELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVW 216
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIF 258
++ G + L+YLG P L A Q V++ + +M E RY G + G
Sbjct: 217 YKAGAQIFSADGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFGRE 272
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L D YPGG FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 273 L--DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 327
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 132/224 (58%), Gaps = 13/224 (5%)
Query: 96 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 575 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 156 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 694
Query: 216 IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG---DINYPGGALFD 272
P L A Q V++ + +M E RY G G+ G D YPGG FD
Sbjct: 695 NPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG-------GVGDSGRELDTLYPGGP-FD 744
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 745 PLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 788
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 125/211 (59%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y
Sbjct: 347 SGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYR 406
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
+ E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L A
Sbjct: 407 DAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 466
Query: 223 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
+ ++ + + + E R G PLG D +YPGG +FDPL LSKDP A
Sbjct: 467 SNL--LLTLVLELVFFFAAETWREAGE---GPLGKAQ--DKSYPGG-VFDPLGLSKDPAA 518
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
F E KVKE+KNGRLAM+A LG ++QA TG+
Sbjct: 519 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQ 549
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 119/200 (59%), Gaps = 7/200 (3%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +R +WLG P YLTGELPGDYG+D AGL DP +Y +++H RWAMLG
Sbjct: 838 YGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGV 897
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG PE ++ G EPVW++ G + L+YLG PGL A Q V++ + +
Sbjct: 898 LGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHA--QSVVLTFLSTLV 955
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G ++ G L D YPGG FDPL L+ DP AF ELKVKE+KNGRL
Sbjct: 956 LMGAVEAYRSAG--SVGDFGADL--DPLYPGGP-FDPLGLADDPEAFLELKVKEVKNGRL 1010
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AMVA GF++Q TGKG +
Sbjct: 1011 AMVAIFGFFVQGILTGKGPV 1030
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
+Q V++ + +LM E R G ++ G L D YPGG FDPL L+ DP AF
Sbjct: 3 AQSVVLTFLSTLVLMGAVEAYRSAG--SVGDFGADL--DPLYPGGP-FDPLGLADDPEAF 57
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
ELKVKE+KNGRLAMVA GF +Q TGKG +
Sbjct: 58 LELKVKEVKNGRLAMVAIFGFSVQGILTGKGPV 90
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 139/246 (56%), Gaps = 19/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K + +A + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVPSSGLFGEARMTMRKTGAKP---------KAASGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE GDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 122 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG 178
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 ----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
Query: 309 AFTGKG 314
TGKG
Sbjct: 232 IVTGKG 237
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 131/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGXVT--DPIYPG 197
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 198 GS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 56 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 116 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 172
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 173 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 225
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 226 KNGRLAMFSMFGFFVQAIVTGKGPI 250
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 127/209 (60%), Gaps = 10/209 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 157 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 209
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
VKEIKNGRLAM + GF++QA TGKG +
Sbjct: 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPV 238
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 138/243 (56%), Gaps = 23/243 (9%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK +SP EL+ N + +K SS S WYG +R ++LGP +
Sbjct: 17 AVKLSPSSP--ELMGNGRVSMRKTTKPVSSG-----------SPWYGPDRVKYLGPFSGE 63
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV- 122
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWATQVVLMGAVEGYRIAG--- 177
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T
Sbjct: 178 -GPLGEIT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 233
Query: 312 GKG 314
GKG
Sbjct: 234 GKG 236
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 127/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 44 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 104 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 160
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVK
Sbjct: 161 IWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVK 213
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPI 241
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 145/256 (56%), Gaps = 14/256 (5%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K++ + + S WYG +
Sbjct: 1 GSCAFAGGQISSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSVV--SASPSPWYGPD 56
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 57 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 116
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 117 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGA 173
Query: 241 PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +
Sbjct: 174 VEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFS 226
Query: 301 WLGFYIQAAFTGKGMI 316
GF++QA TGKG I
Sbjct: 227 MFGFFVQAIVTGKGPI 242
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPI 241
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 137/243 (56%), Gaps = 23/243 (9%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK ++P EL+ N + K+ R + S WYG +R ++LGP +
Sbjct: 17 AVKLSPSAP--ELMGNGRISMKRTT-----------RPVSSGSPWYGPDRVKYLGPFSGE 63
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAM GALG + PE+L G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGV- 122
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA 251
E VW++ G Q LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 KFGEAVWFKAGSQIFQEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG--- 177
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
PLG D YPGG+ FDPL L+ P AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 178 -GPLGEVT--DPIYPGGS-FDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 312 GKG 314
GKG
Sbjct: 234 GKG 236
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 131/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPG 197
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 198 GS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 54 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 113
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 114 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 170
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 171 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 223
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 224 KNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 134/224 (59%), Gaps = 12/224 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 202 PLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 125/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 54 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRW 113
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 114 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 170
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L++DP AF ELKVKEI
Sbjct: 171 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVKEI 223
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 224 KNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K++ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSVGKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWAVQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 206
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 123/210 (58%), Gaps = 10/210 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E+
Sbjct: 36 TKSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIEL 94
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q
Sbjct: 95 MHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QS 152
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+I QALLM E R G PLG GD YPGG+ FDPL L DP EL
Sbjct: 153 IIATVFIQALLMGLVEGYRVGG----GPLG--EAGDKMYPGGS-FDPLGLGDDPDTLAEL 205
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM + G++IQA TGKG +
Sbjct: 206 KVKEIKNGRLAMFSMFGYFIQAIVTGKGPV 235
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 126/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKVK
Sbjct: 160 IWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIKNGRLAM + GF++QA TGKG
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 140/242 (57%), Gaps = 21/242 (8%)
Query: 75 AIANSPL--GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
A+A +P+ G + R+ K AA + A + S WYG +R ++LGP +
Sbjct: 12 AMAGTPIKVGSFGEGRITMRKTAAKP---------KVAASGSPWYGPDRVKYLGPFSGEP 62
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-K 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 122 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLMGAVEGYRIAG---- 175
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TG
Sbjct: 176 GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 313 KG 314
KG
Sbjct: 233 KG 234
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 123/210 (58%), Gaps = 10/210 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E+
Sbjct: 36 TKSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIEL 94
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q
Sbjct: 95 MHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QS 152
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+I QALLM E R G PLG GD YPGG+ FDPL L DP EL
Sbjct: 153 IIATVFIQALLMGLVEGYRVGG----GPLG--EAGDKMYPGGS-FDPLGLGDDPDTLAEL 205
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM + G++IQA TGKG +
Sbjct: 206 KVKEIKNGRLAMFSMFGYFIQAIVTGKGPV 235
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 125/201 (62%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 217
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKG 238
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 124/208 (59%), Gaps = 10/208 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+RN WYG +R WLGP PSYL GE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 2 SRNAVEWYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIH 61
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 62 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 119
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I CQ +LM E R G PLG L D +PG + FDPL L+ DP F ELK+
Sbjct: 120 AILGCQVVLMGLIEAYRVNG----GPLGEGL--DTLHPGES-FDPLGLADDPDTFAELKI 172
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM + GFY+QA TGKG I
Sbjct: 173 KEIKNGRLAMFSMFGFYVQAIVTGKGPI 200
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 139/247 (56%), Gaps = 22/247 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + ++ A + + S WYG +R ++L P
Sbjct: 11 PSFAGKAVKLSPAPRELMGNGRVSMRRTA-----------KPTPSGSPWYGPDRVKYLSP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC 247
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRVA 176
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++Q
Sbjct: 177 G----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 229
Query: 308 AAFTGKG 314
A TGKG
Sbjct: 230 AIVTGKG 236
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 15/210 (7%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ A S WYG +RP +LG PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 57 AKSASGASFWYGADRPGYLGAFTRS-PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEV 115
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG +VPE+LD H+ W+ G + + + YLG+PG L ++
Sbjct: 116 IHARWAMLGALGIVVPELLDQTN--HV---AWFDAGATIFGPKGIQYLGVPG--LINAKN 168
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+I Q +LM E R G A E L D YPG + FDPL L+ DP F EL
Sbjct: 169 IIATVAVQVILMGAIEGYRVNGGPAGEGL------DKVYPGES-FDPLGLADDPDTFAEL 221
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 222 KVKEIKNGRLAMFSNFGFFVQAIVTGKGPI 251
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 126/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGWLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 173 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 109 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAT 165
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q LLM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 166 QVLLMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKG 239
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 127/205 (61%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 APSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 159
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVK
Sbjct: 160 IWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 131/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKAATKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPG 197
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 198 GS-FDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 110
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 168 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 220
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 221 KNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 153
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
+Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 VHAQSILAIWASQVILMGAVEGYRIGG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 206
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 129/228 (56%), Gaps = 11/228 (4%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDV 148
+ K + + K A + A + +YG R +WLGP + P+YLTGE PGDYG+D
Sbjct: 14 VSAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDT 73
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F++Y E++HARWAMLGALG L PE+L G E VW++ G
Sbjct: 74 AGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGT-QFGEAVWFKAGAQIFSE 132
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268
LDYLG P L A Q ++ CQ +LM E R G A E L PG+
Sbjct: 133 GGLDYLGNPSLVHA--QNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGES----- 185
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG +
Sbjct: 186 --FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 231
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 131/229 (57%), Gaps = 22/229 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPG 197
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 198 GS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 35 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 94
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 95 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 151
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 152 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 204
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 205 KNGRLAMFSMFGFFVQAIVTGKGPI 229
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 141/246 (57%), Gaps = 20/246 (8%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP +Q T + +++ ++K + S WYG +R +LGP+
Sbjct: 11 PSFAGKAVKFSPSTPEIQG----TGRVSMRKTTK------PVPSGSPWYGPDRVLYLGPL 60
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 121 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG 177
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 178 ----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230
Query: 309 AFTGKG 314
TGKG
Sbjct: 231 IVTGKG 236
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 140/246 (56%), Gaps = 25/246 (10%)
Query: 74 KAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
KAI SP + + + +KA + S + S WYG +R ++LGP + P
Sbjct: 16 KAIKLSPSTQDIGVGRVTMRKATTKKS---------VPSGSPWYGPDRVKYLGPFSGEAP 66
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
SYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KF 125
Query: 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IE 250
E VW++ G LDYLG P L A Q ++ I Q +LM E R G E
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAGGPPGE 183
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
++PL YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 184 VVDPL---------YPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 311 TGKGMI 316
TGKG I
Sbjct: 234 TGKGPI 239
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 16/205 (7%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 150
Query: 235 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 151 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 200
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 201 KNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 136/237 (57%), Gaps = 21/237 (8%)
Query: 89 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 142
M K+A + S + +A +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAAIVKSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFL 259
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---- 174
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 175 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 122/206 (59%), Gaps = 7/206 (3%)
Query: 112 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 464 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 523
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 581
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
Q LLM E R G A G L D YPGG FDPL L+ DP F ELKVKE
Sbjct: 582 LATQVLLMGAVEAYR-AGNTAPGQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKE 637
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM+A LGFY QA TG+G +
Sbjct: 638 IKNGRLAMMAMLGFYAQAIVTGEGPV 663
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 116/201 (57%), Gaps = 8/201 (3%)
Query: 114 SLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S WYG +R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWA
Sbjct: 223 SQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWA 282
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE L + EPVW++ G LDYLG L +Q +++I
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILG 340
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q LLM E R L G L D YPGG FDPL L+ DP ELKVKEIK
Sbjct: 341 TQVLLMGAAEAYRTG--NGLGNFGKDL--DSLYPGGP-FDPLGLANDPDTLAELKVKEIK 395
Query: 293 NGRLAMVAWLGFYIQAAFTGK 313
NGRLAM A GFY+QA TG+
Sbjct: 396 NGRLAMFAMFGFYVQAIVTGE 416
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 111/184 (60%), Gaps = 6/184 (3%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGELPGDYG+D AGL DP Q+Y E++H RWAMLGA+G +PE L+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
EP+W++ G E L+Y G P L A S ++ I Q LLM E R G A
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAILATQVLLMGAVEAYR-AGNTAP 118
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
G L D YPGG FDPL L+ DP F ELKVKEIKNGRLAMVA LGFY QA TG
Sbjct: 119 GQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTG 175
Query: 313 KGMI 316
+G +
Sbjct: 176 EGPV 179
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 133/224 (59%), Gaps = 12/224 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
+ ++ S+ K++ + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSATKKSVV--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 202 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 104 KALARQ---ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQK 160
KA R+ A +S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 47 KATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 106
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 220
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 107 NRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--Q 163
Query: 221 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
L +Q ++ I CQ +LM E R G PLG D YPGG FDPL L+ DP
Sbjct: 164 LIHAQSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDP 216
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
AF ++KVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 217 DAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 31 KSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 90
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 91 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 149
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 150 A--QSILAIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 200
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 201 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 233
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 125/201 (62%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 124/204 (60%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 14 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 74 MLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWA 130
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVKEIK
Sbjct: 131 CQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVKEIK 183
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPI 207
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 121/200 (60%), Gaps = 10/200 (5%)
Query: 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARWAML
Sbjct: 50 IWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAML 109
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G LDYLG P L A Q ++ I Q
Sbjct: 110 GALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWASQ 166
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G PLG D YPGG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 167 VILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTFAELKVKEIKNG 219
Query: 295 RLAMVAWLGFYIQAAFTGKG 314
RLAM + GF++QA TGKG
Sbjct: 220 RLAMFSMFGFFVQAIVTGKG 239
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 132/223 (59%), Gaps = 12/223 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 93 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 151
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 152 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 202
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L L+ DP AF ELKVKE+KNGRLAM + GF+ QA TGKG I
Sbjct: 203 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPI 245
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PS+LTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 130/233 (55%), Gaps = 18/233 (7%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFAAGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKG +
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 16/205 (7%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 34 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 93
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 94 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 151
Query: 235 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 152 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 201
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 202 KNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 122/201 (60%), Gaps = 10/201 (4%)
Query: 116 WYGEERPRWLGPIPY--DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
WYG +RP+WL P + P YLTGE PGDYG+D GLS DP F Y E+LHARWAM
Sbjct: 125 WYGPDRPKWL-PDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAM 183
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L M L EPVW++ G L +++DYLG P L + +I IA
Sbjct: 184 LGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSP--QLVHASSIIAIAAA 241
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q LLM G E R G+ P G D +PGG F+PL KD ELKVKEIKN
Sbjct: 242 QVLLMGGAEAYRASGV---APNGEEF--DKMHPGGYYFNPLKFGKDEADLAELKVKEIKN 296
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + LGFYIQAA TG G
Sbjct: 297 GRLAMFSMLGFYIQAATTGNG 317
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKG 238
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 126/214 (58%), Gaps = 19/214 (8%)
Query: 108 RQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
RQ ++ +YG +R +LGP D PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 27 RQVTRAAIEFYGPDRATFLGPF-TDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEV 85
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G E VW++ G + L+YLG L +Q
Sbjct: 86 IHARWAMLGALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLG--NSSLVHAQS 142
Query: 227 VIVIAICQALLMVGPECARYC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
+I CQ +LM G E R G+E L+ L YPGG FDPL L+ DP
Sbjct: 143 IIATLACQVILMGGAEAYRAAGEGPGLEGLDSL---------YPGGP-FDPLGLADDPDT 192
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 193 FSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 126/210 (60%), Gaps = 7/210 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 88 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 147
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 148 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 205
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 206 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 260
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 261 KVKELKNGRLAMVAMLGFYVQPLVTKAGPV 290
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 122/210 (58%), Gaps = 12/210 (5%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 323 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 382
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAML + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 383 IHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 435
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 436 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 490
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 491 KVKELKNGRLAMVAMLGFYVQPLVTKAGPV 520
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D YPGG FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 2 DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 55
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 134/221 (60%), Gaps = 12/221 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ +++++ K++A A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 42 RLTMREATGKKSVA--ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 99
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 100 DPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 158
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P +L +Q ++ I CQ +LM E R G PLG D YPGG FDP
Sbjct: 159 LGSP--NLVHAQSILAILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDP 209
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L + DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 210 LGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 30 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 89
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 90 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 146
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 147 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 200
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 201 GRLAMFSMFGFFVQAIVTGKGPI 223
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 131/234 (55%), Gaps = 17/234 (7%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D A +S DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG-LKFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDY G P +L +Q ++ I CQ +LM E R G E L+PL
Sbjct: 139 FSEGGLDYAGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPL------- 189
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PGGA FDPL L+ DP A ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 190 --LPGGA-FDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 143/258 (55%), Gaps = 23/258 (8%)
Query: 59 LAGVLVFSAIPFTAVKAIANSP--LGELLQNRMLETKKAALQDSSKFKALARQARNESLW 116
+A + S+ P A KA+ P ELL N + +K +A+ + S W
Sbjct: 1 MASTMALSS-PSLAGKAVKLGPSAASELLGNGRISMRKT----------IAKPVSSGSPW 49
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGA
Sbjct: 50 YGADRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG L +Q ++ I Q +
Sbjct: 110 LGCVFPELLARNGV-KFGEAVWFKAGAQIFSDGGLDYLG--NSSLVHAQSILAIWATQVV 166
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRL
Sbjct: 167 LMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRL 219
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM + GF++QA TGKG
Sbjct: 220 AMFSMFGFFVQAIVTGKG 237
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 126/210 (60%), Gaps = 7/210 (3%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 36 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 95
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 96 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 153
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 154 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 208
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKE+KNGRLAMVA LGFY+Q T G +
Sbjct: 209 KVKELKNGRLAMVAMLGFYVQPLVTKAGPV 238
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 64/96 (66%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 271 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 330
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
+HARWAMLGALG + PE+L G VW++ G
Sbjct: 331 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAG 366
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 141/246 (57%), Gaps = 18/246 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP + + T + ++ +SK + S WYG +R ++LGP
Sbjct: 11 PALAGKAVKLSPA----ASEVFGTGRVTMRKASK-----PTGPSGSPWYGSDRVKYLGPF 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I Q +LM E R G
Sbjct: 122 GV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWATQVILMGAVEGYRVAG 178
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA
Sbjct: 179 N---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 232
Query: 309 AFTGKG 314
TGKG
Sbjct: 233 IVTGKG 238
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 130/233 (55%), Gaps = 18/233 (7%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKG +
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 125/204 (61%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NG LAM + GF++QA TGKG I
Sbjct: 214 NGSLAMFSMFGFFVQAIVTGKGPI 237
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 130/233 (55%), Gaps = 18/233 (7%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 263
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKG +
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 125/208 (60%), Gaps = 16/208 (7%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 110
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 232 ICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
CQ +LM E R G E +P+ YPGG+ FDPL L+ DP AF ELKV
Sbjct: 168 ACQVILMGAVEGYRIAGGPLREVTDPI---------YPGGS-FDPLGLADDPDAFAELKV 217
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM + GF++QA TGKG I
Sbjct: 218 KEIKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 160 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 213
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPI 236
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 84 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 143
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 144 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 200
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 201 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 253
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 254 GRLAMFSMFGFFVQAIVTGKG 274
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 133/230 (57%), Gaps = 16/230 (6%)
Query: 91 ETKKAALQDSSKFKALARQ------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
+T+ A SS + R+ A + S WYG +R ++LGP + PSYLTGE PGDY
Sbjct: 20 QTELPATVRSSNGRVTMRKTAGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDY 79
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQ 138
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN 264
LDYLG P L A Q ++ I Q +LM E R G PLG D
Sbjct: 139 IFSEGGLDYLGNPSLIHA--QSILAIWATQVVLMGAVEGYRIAG----GPLGEVT--DPL 190
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 191 YPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 5 SPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 64
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 65 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWAT 121
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q LLM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 122 QVLLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 174
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 175 GRLAMFSMFGFFVQAIVTGKG 195
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K
Sbjct: 5 KTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKN 64
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 65 RELEVIHARWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 123
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 124 A--QSILAIWATQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 174
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 175 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 207
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 127/211 (60%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-EFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 160 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 213
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPI 236
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 9/194 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LG + + P+YLTGE GDYG+D AGLS DP F++Y E++HARWA
Sbjct: 39 DSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G + EPVW++ G Q L+YLG +L +Q +IV +
Sbjct: 99 MLGALGCITPELLANNGT-PIAEPVWFKAGAQIFQDGGLNYLG--NENLVHAQSIIVTLL 155
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G A E L D YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 156 VQVILMGTVEGYRVNGGPAGEGL------DKLYPGGDFFDPLGLADDPDTFAELKVKEIK 209
Query: 293 NGRLAMVAWLGFYI 306
NGRLAM + GF++
Sbjct: 210 NGRLAMFSMFGFFV 223
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 134/224 (59%), Gaps = 12/224 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
+LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 HLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 202 PLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 245
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 121/201 (60%), Gaps = 10/201 (4%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG ER +WLGP + P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 40 WYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 99
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 100 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 156
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R G A E L D YPG A FDPL L+ DP F ELKVKEIKNGR
Sbjct: 157 ILMGLVEGYRVNGGPAGEGL------DPLYPGEA-FDPLGLADDPDTFAELKVKEIKNGR 209
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM + GF++QA TG+G I
Sbjct: 210 LAMFSMFGFFVQAIVTGQGPI 230
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 140/246 (56%), Gaps = 20/246 (8%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP +Q T + +++ ++K + S WYG +R +LGP+
Sbjct: 11 PSFAGKAVKFSPSTPEIQG----TGRVSMRKTTK------PVPSGSPWYGPDRVLYLGPL 60
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 121 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG 177
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
PLG D YPGG+ FDPL + DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 178 ----GPLGEVT--DPLYPGGS-FDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230
Query: 309 AFTGKG 314
TGKG
Sbjct: 231 IVTGKG 236
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
K ++ S+ K +A S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 1 SKFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 57
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 58 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 116
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG P L A Q ++ I Q +LM E R G PLG + D YPGG+ FD
Sbjct: 117 YLGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FD 167
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 168 PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 209
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 124/200 (62%), Gaps = 10/200 (5%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +
Sbjct: 64 LGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVV 120
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G PLG L DI YPGGA FDPL L+ DP ELKVKE+KNGRL
Sbjct: 121 LMGFIEGYRVGG----GPLGEGL--DIIYPGGA-FDPLGLADDPDTAAELKVKELKNGRL 173
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM + GF++QA TGKG +
Sbjct: 174 AMFSMFGFFVQAIVTGKGPV 193
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 123/205 (60%), Gaps = 10/205 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 54 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 113
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 114 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 170
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 171 ACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVKEI 223
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRL M + GF++QA TGKG I
Sbjct: 224 KNGRLTMFSMFGFFVQAIVTGKGPI 248
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 132/221 (59%), Gaps = 13/221 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
K ++ S+ K +A S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 2 KFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 58
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 59 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 117
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I Q +LM E R G PLG + D YPGG+ FDP
Sbjct: 118 LGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDP 168
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 169 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 209
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 132/222 (59%), Gaps = 13/222 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
K ++ S+ K +A S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 3 SKFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 59
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 60 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 118
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG P L A Q ++ I Q +LM E R G PLG + D YPGG+ FD
Sbjct: 119 YLGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FD 169
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 170 PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 132/221 (59%), Gaps = 13/221 (5%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
K ++ S+ K +A S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 4 KFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 119
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I Q +LM E R G PLG + D YPGG+ FDP
Sbjct: 120 LGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDP 170
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 171 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 14 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 73
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 74 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 130
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 131 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 184
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM + GF++QA TGKG I
Sbjct: 185 GRLAMFSMFGFFVQAIVTGKGPI 207
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 179 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 215
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKG 236
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 215
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKG 236
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 127/211 (60%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 132 LAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 184
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++QA TGKG
Sbjct: 185 VKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 119/201 (59%), Gaps = 8/201 (3%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWAM
Sbjct: 43 DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PEVL E VW++ G LDYLG P +L +Q ++ I C
Sbjct: 103 LGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNP--NLVHAQSILAIWAC 160
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G+ + GD+ YPGG FDPL + DP ELKVKEIKN
Sbjct: 161 QVILMGLVEGYRINGLPDVGE-----GGDL-YPGGQYFDPLGFADDPETLAELKVKEIKN 214
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKG 235
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYL GE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 160 IWASQVVLMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAFSELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLIHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 124/201 (61%), Gaps = 9/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 46 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 162
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 129/225 (57%), Gaps = 10/225 (4%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T A Q + KA + R +YG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 12 TGITARQSTKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDYGWDTAG 71
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE-PVWWRVGYSKLQGE 209
LS DP F +Y E++H+RWA+LGALG L PE L GA E VW++ G S +
Sbjct: 72 LSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDD 131
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
L+YLG P L +Q ++ + Q +L+ E RY G ++ GD YPGG
Sbjct: 132 GLNYLGNP--QLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVD-----TSGDKLYPGG- 183
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L DP A ELKVKEIKNGRLA V+ GF++QA TGKG
Sbjct: 184 FFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFVQALVTGKG 228
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 109 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWAT 165
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 166 QVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKG 239
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 122/201 (60%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G L YLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLGNPSLVHA--QSILAIWAC 162
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ D AF ELKVKEIKN
Sbjct: 163 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDAEAFAELKVKEIKN 215
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKG 236
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 143/250 (57%), Gaps = 17/250 (6%)
Query: 69 PFTAVKAIANSPLGELL--QNRMLETKKAALQDSSKFKALARQAR--NESLWYGEERPRW 124
P A KA+ SP L+ + R+ K S++ + A + R S WYG +R ++
Sbjct: 13 PSFAGKAVKISPSNVLIFGEGRITMQDKTT---SNRPRTTAGKLRPATSSPWYGPDRVKY 69
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 70 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPEL 129
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECA 244
L G E VW++ G LDYLG P +L +Q ++ I Q +LM E
Sbjct: 130 LARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAVQVVLMGAVEGY 186
Query: 245 RYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
R G PLG D YPG + FDPL L+ DP AF ELKVKE+KNGRLAM + GF
Sbjct: 187 RIAG----GPLGEIT--DPLYPGNS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 239
Query: 305 YIQAAFTGKG 314
++QA TGKG
Sbjct: 240 FVQAIVTGKG 249
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 129/235 (54%), Gaps = 13/235 (5%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNES--LWYGEERPRWLGPIPYD-YPSYLTGELP 141
+ L+ A K A+QA S +YG R +WLGP + P+YLTGE P
Sbjct: 7 FSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFP 66
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++
Sbjct: 67 GDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGT-QFGEAVWFKA 125
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
G LDYLG P L A Q ++ Q +LM E R G A E L PG
Sbjct: 126 GAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPG 183
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 184 ES-------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 231
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K E++HARWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKG 238
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 126/211 (59%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAG---EGPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 16/205 (7%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 52 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 111
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 112 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 169
Query: 235 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 170 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 219
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 220 KNGRLAMFSMFGFFVQAIVTGKGPI 244
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 115/193 (59%), Gaps = 17/193 (8%)
Query: 126 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
GP+ PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLGALG L PE+L
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
G F EPVWW+ G L E LDYLG P +L +Q ++ Q +LM E R
Sbjct: 65 SQNG-FTFQEPVWWKAGAQILSSEGLDYLGKP--NLVHAQSIVATLAVQVILMGSAEAYR 121
Query: 246 YC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
G++ L+ L YPGG FDPL + DP ELKVKEIKNGRLAM +
Sbjct: 122 AAGSAPGVDGLDKL---------YPGGP-FDPLEFASDPDTLAELKVKEIKNGRLAMFSM 171
Query: 302 LGFYIQAAFTGKG 314
GF++QA TGKG
Sbjct: 172 FGFFVQAIVTGKG 184
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 126/211 (59%), Gaps = 9/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAG---EGPLG--EAEDLLYPGGS-FDPLGLAADPEAF 207
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 124/201 (61%), Gaps = 9/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 26 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 85
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 86 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 142
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 143 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 196
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 197 GRLAMFSMFGFFVQAIVTGKG 217
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 126/211 (59%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSY TGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+K+GRLAM + GF++QA TGKG
Sbjct: 206 AELKVKELKHGRLAMFSMFGFFVQAIVTGKG 236
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 125/205 (60%), Gaps = 10/205 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKVK
Sbjct: 160 IWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIK GRLAM + GF++QA TGKG
Sbjct: 213 EIKKGRLAMFSMFGFFVQAIVTGKG 237
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG FDPL L+ DP AF ++KVKE+KN
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGT-FDPLGLADDPEAFADVKVKELKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 136/236 (57%), Gaps = 21/236 (8%)
Query: 89 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 143
M K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGD
Sbjct: 1 MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGD 60
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGA 119
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLP 260
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 120 QIFAEGGLNYLG--NENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL----- 172
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 173 ----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 223
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 135/231 (58%), Gaps = 21/231 (9%)
Query: 94 KAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDV 148
K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGDYG+D
Sbjct: 3 KSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 62
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 63 AGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGSQIFAE 121
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINY 265
L+YLG +L +Q +I Q ++M E R G E L+PL +
Sbjct: 122 GGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---------H 170
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 171 PGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 220
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
K ++ S+ K +A S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 3 SKFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 59
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 60 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 118
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
YLG P L A Q ++ I Q +LM E R G PLG + D YPGG+ FD
Sbjct: 119 YLGNPSLVHA--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FD 169
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL L+ DP AF E KVKE+KNGRLAM + GF++QA TGKG
Sbjct: 170 PLGLADDPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFGELKVKELKK 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM++ GF++QA TGKG
Sbjct: 217 GRLAMLSMFGFFVQAIVTGKG 237
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 128/215 (59%), Gaps = 17/215 (7%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
++ + +S WYG +RP +LG + + PSYLTGE PGDYG+D AG S DP F +Y E+
Sbjct: 33 SKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEV 92
Query: 167 LHARWAMLGALGALVPEVLDMVGA-FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
+HARWA+LGALG + PE+L G F +W++ G + L+YLG P +L +Q
Sbjct: 93 IHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNP--NLIHAQ 150
Query: 226 GVIVIAICQALLMVGPECARYC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
++ Q ++M E R G+E L+ L YPGG FDPL L+ DP
Sbjct: 151 SILATLAVQVIVMGAAEGFRANGEAPGVEGLDTL---------YPGGP-FDPLGLADDPD 200
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
F ELKVKEIKNGRLAM A GF++QA TGKG I
Sbjct: 201 TFAELKVKEIKNGRLAMFACFGFFVQAIVTGKGPI 235
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 122/201 (60%), Gaps = 9/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F + +++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF+ QA TGKG
Sbjct: 219 GRLAMFSMFGFFAQAIVTGKG 239
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +LGP + PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 31 FYGPDRAGFLGPF-TESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 89
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G + L+YLG P L A Q +I CQ
Sbjct: 90 ALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLGNPSLVHA--QSIIATLACQV 146
Query: 236 LLMVGPECARYC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
+LM G E R G+E L+ L YPGG FDPL L+ DP F ELK KEI
Sbjct: 147 ILMGGAEAYRANGEGPGVEGLDSL---------YPGGP-FDPLGLADDPDTFAELKTKEI 196
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 197 KNGRLAMFSMFGFFVQAIVTGKGPI 221
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 140/250 (56%), Gaps = 28/250 (11%)
Query: 69 PFTAVKAIANSPLG-ELLQN---RMLETKKAALQDSSKFKALARQARNESLWYGEERPRW 124
P A KA+ +P EL N M +T KA + DS WYG +R ++
Sbjct: 11 PALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSP--------------WYGPDRVKY 56
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 57 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 116
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECA 244
L G E VW++ G LDYLG P L A Q ++ I Q +LM E
Sbjct: 117 LARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILSIWATQVILMGAVEGY 173
Query: 245 RYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
R G PLG + D YPGG+ FDPL L++DP ELKVKE+KNGRLAM + GF
Sbjct: 174 RVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGF 226
Query: 305 YIQAAFTGKG 314
++QA TGKG
Sbjct: 227 FVQAIVTGKG 236
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 123/200 (61%), Gaps = 10/200 (5%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +
Sbjct: 64 LGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAVQVV 120
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+KNGRL
Sbjct: 121 LMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRL 173
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM + GF++QA TGKG I
Sbjct: 174 AMFSMFGFFVQAIVTGKGPI 193
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L +Q ++ CQ
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKE+KNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKELKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPV 228
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 124/202 (61%), Gaps = 7/202 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P YLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG +VPE+L G VW++ G + + L+YLG P +L +Q ++ Q
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNP--NLIHAQSILATLAFQ 145
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
++M E R+ G P G D YPG FDP+ L++DP F ELKVKEIKNG
Sbjct: 146 VVVMGAAESFRFNGG---APGGFLEGNDRLYPGDQ-FDPMGLAEDPDTFAELKVKEIKNG 201
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TG+G I
Sbjct: 202 RLAMFSMFGFFVQAIVTGQGPI 223
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 123/204 (60%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+++WYG +RP++LGP PSYLTG+ PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QNIWYGPDRPKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G + E VW++ G LDYLG P L Q ++ I
Sbjct: 104 MLGALGCFFPEILSKNGV-NFGEAVWFKAGAQIFSEGGLDYLGNPA--LVRPQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG L D YPGGA FD L L++DP F E KVKE
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDHLGLAEDPDTFAEFKVKEFN 213
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + LGF++QA TGKG I
Sbjct: 214 NGRLAMFSMLGFFVQAIVTGKGPI 237
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 123/201 (61%), Gaps = 9/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTG+ PGDYG+D AGLS P F + E++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG D+ YPGG+ FDPL L+ DPVAF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRVPGD---GPLG--EAEDLLYPGGS-FDPLGLATDPVAFAELKVKEIKN 218
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKG 239
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 125/207 (60%), Gaps = 10/207 (4%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+
Sbjct: 48 SESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHS 107
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 164
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 165 IWASQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPI 244
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 125/211 (59%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEASWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 134 AQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLALADDPEAF 186
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 187 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 217
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + R +YG R +LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 24 KGTKQVTRAAIEFYGPNRAGYLGPFTKS-PSYLNGEYPGDYGWDTAGLSADPETFARYRE 82
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VWW+ G LDYLG P L A
Sbjct: 83 IEVIHARWAMLGALGCVTPELLAKNGV-SFGEAVWWKAGSQIFAPGGLDYLGNPSLIHA- 140
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q +I I Q LLM E R G A E L D YPG A FDPL L+ DP F
Sbjct: 141 -QSIIAIVFSQVLLMGLIEGYRVNGGPAGEGL------DALYPGEA-FDPLGLADDPDTF 192
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EL+VKEIKNGRLAM + GF++QA TGKG I
Sbjct: 193 AELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 125/205 (60%), Gaps = 17/205 (8%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 72 GALGCITPELLAKNG-IPFGEAVWFKAGSQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 128
Query: 235 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 129 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 178
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 179 KNGRLAMFSMFGFFVQAIVTGKGPI 203
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE GDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q + M E R G PLG + D YPGG+L DPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVVFMGAVEGYRVAG----GPLGEVV--DPLYPGGSL-DPLGLADDPEAFAELKVKEIKN 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM++ GF++QA TGKG
Sbjct: 217 GRLAMLSMFGFFVQAIVTGKG 237
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 121/202 (59%), Gaps = 8/202 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE GDYG+D AGLS DP F KY E++HARWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 89 GALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQ 145
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
LLM E R G P G D YPGGA FDPL L+ DP ELKVKEIKNG
Sbjct: 146 VLLMGAAESYRANGG---APGGFGEDLDSLYPGGA-FDPLGLADDPDTLAELKVKEIKNG 201
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TG+G I
Sbjct: 202 RLAMFSMFGFFVQAIVTGQGPI 223
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 125/206 (60%), Gaps = 11/206 (5%)
Query: 110 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 40 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 99
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
+RWAMLG LG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 100 SRWAMLGGLGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 156
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKV
Sbjct: 157 AIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKV 209
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM + GF++QA TGKG
Sbjct: 210 KEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 125/205 (60%), Gaps = 17/205 (8%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 92 GALGCITPELLAKNG-IPFGEAVWFKAGAQIFAEGGLNYLG--NENLIHAQSIIATLAFQ 148
Query: 235 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 149 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 198
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAM + GF++QA TGKG I
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPI 223
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 125/211 (59%), Gaps = 10/211 (4%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEACWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 134 AQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLALADDPEAF 186
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 187 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 217
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 119/202 (58%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPV 228
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 151
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
+Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 152 VHAQSILAIWASQVILMGAVEGYRIGG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 205 AFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 119/202 (58%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPV 228
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 127/212 (59%), Gaps = 11/212 (5%)
Query: 104 KALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
K +A+ + + S WYG +R ++LGP + PSYL+GE PGDYG+D AGLS DP F K
Sbjct: 3 KTVAKPKTVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNR 62
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 63 ELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 121
Query: 223 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP A
Sbjct: 122 --QSILAIWATQVILMGAVEGYRIAG----GPLGEVE--DPLYPGGS-FDPLGLADDPEA 172
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
F ELKVKEIKNGRLAM + GF++ A TGKG
Sbjct: 173 FAELKVKEIKNGRLAMFSMFGFFVXAIVTGKG 204
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 119/202 (58%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 96 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 152
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 153 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 205
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG +
Sbjct: 206 RLAMFSMFGFFVQAIVTGKGPV 227
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E V ++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVGFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKK 216
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKG 237
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 124/204 (60%), Gaps = 10/204 (4%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG++ AG+S DP F + E++H+RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWA 69
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 70 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 126
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E G E L D YPGGA F+PL L+ DP ELKVKE+K
Sbjct: 127 CQVVLMGFVEGYGVGGGPLGEGL------DKVYPGGA-FEPLGLADDPDTAAELKVKELK 179
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 180 NGRLAMFSMFGFFVQAIVTGKGPI 203
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG R +WLGP P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 39 FYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 98
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 99 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 155
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R G A E L D YPG A FDPL L+ DP F ELKVKEIKNGR
Sbjct: 156 ILMGLVEGYRVNGGPAGEGL------DPLYPGEA-FDPLGLADDPDTFAELKVKEIKNGR 208
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM + GF++QA TG+G I
Sbjct: 209 LAMFSMFGFFVQAIVTGQGPI 229
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 97 GALGIVTPELLQKNGV-QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+L+ E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VVLLGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 207 RLAMFSSFGFFVQAIVTGKGPI 228
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP FQ+Y E++HARWAML
Sbjct: 28 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 88 GALGIVTPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 144
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+L+ E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 145 VILLGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 197
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAM + GF++QA TGKG I
Sbjct: 198 RLAMFSSFGFFVQAIVTGKGPI 219
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 125/206 (60%), Gaps = 11/206 (5%)
Query: 110 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 102
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 SRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 159
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
I Q +LM E R G PLG + D YPGGA FDPL L+ DP A ELKV
Sbjct: 160 AIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEACAELKV 212
Query: 289 KEIKNGRLAMVAWLGFYIQAAFTGKG 314
K+IKNGRLAM + GF++QA TGKG
Sbjct: 213 KKIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 142/256 (55%), Gaps = 33/256 (12%)
Query: 65 FSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARN---ESLWYGEER 121
SA+ F A +A+A KA + + +A QA+ ES +YG R
Sbjct: 1 MSAVAFRAQRAVA---------------AKAGRKTTVSVQARRTQAKKAVPESPFYGPNR 45
Query: 122 PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +LG + + P+YL GE PGDYG+D AGLS DP F++Y E++HARWA+LGALG +V
Sbjct: 46 PLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVV 105
Query: 182 PEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP 241
PE+L G + VW++VG + L+YLG +L +Q ++ + Q +LM
Sbjct: 106 PELLARNGVAMPADGVWFKVGAEIFKEGGLNYLG--NENLVHAQSIVATLLVQLVLMGWA 163
Query: 242 ECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R G E L+PL YPGGA FDPL L+ DP ELKVKE+KNGR+AM
Sbjct: 164 EGYRINGGPLGEGLDPL---------YPGGA-FDPLGLADDPDTLAELKVKELKNGRMAM 213
Query: 299 VAWLGFYIQAAFTGKG 314
A GF +QA T KG
Sbjct: 214 AAMFGFLVQAIVTQKG 229
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
LAM + GF++QA TGKG +
Sbjct: 207 ALAMFSMFGFFVQAIVTGKGPV 228
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG PE+L G E VW++ G LDYLG P L A Q ++ + Q
Sbjct: 96 GALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATSAVQ 152
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 153 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 205
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLA + GF++QA TGKG +
Sbjct: 206 RLASFSMFGFFVQAIVTGKGPV 227
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 117/193 (60%), Gaps = 11/193 (5%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNGV-QFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
+LM E R G A E L D YPG + FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGL------DPLYPGKS-FDPLGLADDPDTFAELKVKEIKNG 206
Query: 295 RLAMVAWLGFYIQ 307
RLAM + GF++Q
Sbjct: 207 RLAMFSMFGFFVQ 219
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 125/207 (60%), Gaps = 10/207 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S W+G + ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 64 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 120
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I Q +LM E R G PLG + D YPGG+ FDPL L++ P AF ELK
Sbjct: 121 LAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEVPEAFAELK 173
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKE+KNGRLAM + GF++ A TGKG
Sbjct: 174 VKELKNGRLAMFSMFGFFVPAIVTGKG 200
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 114 SLW-YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S W +G ER +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 19 STWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 78
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 79 MLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWA 135
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG + G + YPGG+ FDPL L+ DP AF ELKVKEIK
Sbjct: 136 TQVILMGAVEGYRVAG----GPLGK-VTGPL-YPGGS-FDPLGLADDPEAFAELKVKEIK 188
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 189 NGRLAMFSMFGFFVQAIVTGKG 210
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 131/234 (55%), Gaps = 31/234 (13%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F AMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETF-------------AMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 125
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
LDYLG P +L +Q ++ I Q +LM E R G E L+PL
Sbjct: 126 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 176
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 177 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 227
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 113/192 (58%), Gaps = 10/192 (5%)
Query: 110 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A+ WYG R +WLGP PSYLTGE PGDYG+D AGLS DP F+KY E++H
Sbjct: 25 AKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIH 84
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
AR+AMLGALG + PE+L G E VW+R G Q LDYLG P L A S G I
Sbjct: 85 ARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAI 144
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
VI+ Q +LM E R G A E L PG+ FDPL L+ DP F ELK+
Sbjct: 145 VIS--QVVLMGLVEGYRVNGGPAGEGLDSLYPGES-------FDPLGLADDPDTFAELKI 195
Query: 289 KEIKNGRLAMVA 300
KEIKNGRLAM +
Sbjct: 196 KEIKNGRLAMFS 207
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 118/201 (58%), Gaps = 7/201 (3%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R ++LGP + YLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPE-SDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 88 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQV 144
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R G P G D YPGG FDPL L+ DP ELKVKE+KNGR
Sbjct: 145 ILMGAAEAYRANGG---APGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGR 201
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM + GF++QA TG+G I
Sbjct: 202 LAMFSMFGFFVQAIVTGQGPI 222
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 125/226 (55%), Gaps = 11/226 (4%)
Query: 91 ETKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+TK ++ +L N LWYG +R ++LGP PSY TGE PGDYG+D
Sbjct: 20 QTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSVQTPSYPTGEFPGDYGWDT 79
Query: 149 AGLSKDP-MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP AF K E+++ RWAMLGA G + PEVL EPVW++ G
Sbjct: 80 AGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFS 139
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P +L +Q ++ + Q +LM E R I + +G G+ YPG
Sbjct: 140 EGGLDYLGNP--NLVHAQSILAVLGFQVILMGLVEGFR---INRFDGVG---EGNDLYPG 191
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
G FD L+L D V F ELKVKEIKNG LAM + GF++QA TGK
Sbjct: 192 GKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGK 237
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP F+KY E++HARWAMLGALG + PE+L G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
VW+R G + LDYLG P L A S G IVI+ Q +LM E R G A E L
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS--QVILMGLIEGYRVNGGPAGEGL 118
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGM 315
PG+ FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TGKG
Sbjct: 119 DPLYPGES-------FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGP 171
Query: 316 I 316
+
Sbjct: 172 V 172
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 125/234 (53%), Gaps = 44/234 (18%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFK----- 133
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGD 262
I Q +LM E R G E L+PL
Sbjct: 134 -----------------------AIWASQVVLMGLIEGYRVGGGPLGEGLDPL------- 163
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 164 --YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 214
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 120/206 (58%), Gaps = 9/206 (4%)
Query: 111 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
R + ERP WLGP PSYL G L GDYG+D +GLS P A + E+LHAR
Sbjct: 15 RTTAATSAPERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHAR 74
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGALG+L+PE+L L+EPVW++ G LDYLG P L +Q ++ I
Sbjct: 75 WAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNP--SLVHAQSILAI 132
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
Q LLM E R G PLG GD YP GA FDPL S+DP + EL+ KE
Sbjct: 133 LGFQVLLMGLSEGYRLAG----GPLGEV--GDALYP-GASFDPLGFSEDPESLLELQTKE 185
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM+A LG Y QA TGKG +
Sbjct: 186 IKNGRLAMLAMLGMYTQALVTGKGPV 211
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 116/203 (57%), Gaps = 10/203 (4%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R ++LGP + PSYLTGE P G DP F K E++HARW
Sbjct: 46 SSSPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARW 105
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 AMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIW 162
Query: 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 163 ACQVILMGAVEGYRVAG----GPLGEIT--DPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAM + GFY+QA TGKG
Sbjct: 216 KNGRLAMFSMFGFYVQAIVTGKG 238
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 120/206 (58%), Gaps = 9/206 (4%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268
+ L+YLG P L A Q V++ + +M E RY G PLG L D YPGG
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEGYRYGG---GWPLGDDL--DRLYPGG 297
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNG 294
FDPL L+ DP AF ELKVKE+KNG
Sbjct: 298 P-FDPLGLANDPDAFAELKVKEVKNG 322
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 113/188 (60%), Gaps = 10/188 (5%)
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P + PSYLTGE PGDYG+D AGLS DP F K E++H+ WAMLGALG + PE+L
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 61 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRI 117
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++
Sbjct: 118 AG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 170
Query: 307 QAAFTGKG 314
QA TGKG
Sbjct: 171 QAIVTGKG 178
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 121/210 (57%), Gaps = 18/210 (8%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 39 TAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 98
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQG 226
RWAMLG G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 99 CRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------IN 151
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+I+ I + +L+ G E R LE D +PGG FDPL L+ DP L
Sbjct: 152 LILAVIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAALL 202
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM + LGF+IQA TG+G +
Sbjct: 203 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPV 232
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 119/211 (56%), Gaps = 13/211 (6%)
Query: 104 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K++A + +YG RP W GP P D P YL GE PGDYG D+ L + P + K
Sbjct: 1 KSVAPSQDTRTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKL 60
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
+ E+++ RWAMLG G LVPE+++ EPVW++ G +DYLG+PG
Sbjct: 61 RSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFIN 119
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A S ++ + + QALLM E AR L P G D YPGG FDPL S DP
Sbjct: 120 AHS--LVAVIVVQALLMGVAEYARI----KLSPEG----NDAFYPGGKAFDPLGFSSDPE 169
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
+F ELKVKEIKNGRLAM+A G + Q A TG
Sbjct: 170 SFAELKVKEIKNGRLAMMAMAGLFAQGAVTG 200
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 108/179 (60%), Gaps = 8/179 (4%)
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
PVW++ G LDYLG P +L +Q ++ + Q +LM E R G+ +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG-- 116
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 117 ----EGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 171
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 125/204 (61%), Gaps = 18/204 (8%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYGE R +L G + D P YLTGE+PGDYGFD GLSK P F KY +E++HARWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA E VW++ G L G TL+Y G A +V+A+
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFG------ANIPINLVLAV 171
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+++VG A Y ++ LG+ D +PGG FDPL L+KDP F LKVKEIK
Sbjct: 172 LAEVILVG--GAEYY--RSINNLGL----DRLHPGGP-FDPLGLAKDPDNFALLKVKEIK 222
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM A LGF+IQA TG+G +
Sbjct: 223 NGRLAMFAMLGFFIQAYATGEGPV 246
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 128/206 (62%), Gaps = 18/206 (8%)
Query: 116 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YLTGE+PGDYG+D GLSK P F +Y +E++HARWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VWW+ G L+G+++ Y G +P L+LA +
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVP-LNLAAA------ 118
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R PLG L D +PGGA FDPL L+KDP F LKVKE
Sbjct: 119 VIAEVILVGGAEYYRSTNK---SPLGSDL--DRLHPGGA-FDPLGLAKDPDQFALLKVKE 172
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 173 IKNGRLAMFSMLGFFVQAYVTGEGPV 198
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 118/209 (56%), Gaps = 24/209 (11%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+Y + PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 40 FYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA-------GSQGV 227
GALG + PE+L G E VW++ G LDYLG P L A G V
Sbjct: 100 GALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKV 158
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
I++ + + + G E L+PL YPG + FDPL L+ DP F ELK
Sbjct: 159 ILMGLVEGYRVNGGPAG-----EGLDPL---------YPGES-FDPLGLADDPDTFAELK 203
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
VKEIKNGRLAM + GF++QA TGKG I
Sbjct: 204 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 232
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 126/224 (56%), Gaps = 10/224 (4%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
TA A+++S +G+ + + + S K ++ + S WYG +R ++LGP
Sbjct: 3 TATMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSG 62
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G LDYLG P L A Q ++ I CQ +LM E R G
Sbjct: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG-- 177
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNG
Sbjct: 178 --GPLGEVT--DPLYPGGS-FDPLGLADDPKAFAELKVKEIKNG 216
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 16/218 (7%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + AR+ S WYG +R +LGP+ PSYLTGE PGDYG+D GLS DP F K
Sbjct: 34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWA+ LG + PE+L G E VW++ G L + G P L
Sbjct: 94 RELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAGSQIFSEGGLSHPGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSK 278
A Q ++ I CQ +LM E G E ++PL Y GG+ FDPL L
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPL---------YLGGS-FDPLGLGD 200
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F ELKVKEIKNGRLAM + GF++QA TGKG I
Sbjct: 201 DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 133/217 (61%), Gaps = 29/217 (13%)
Query: 112 NESL--WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L G + D P+YLTGE+PGDYG+D GLSK P F +Y +E+
Sbjct: 42 NEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYEL 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGS 224
+HARWAMLGA G ++PE + GA E VWW+ G L+G+++ Y G +P ++LA +
Sbjct: 102 IHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVP-INLAAA 160
Query: 225 QGVIVIAICQALLMVGPECARYC-----GIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
I + +L+ G E R G++ L+ L +PGGA FDPL L+KD
Sbjct: 161 ------VIAEVILVGGAEYYRSTNKDVYGLQDLDRL---------HPGGA-FDPLGLAKD 204
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P F LKVKEIKNGRLAM + LGF++QA TG+G +
Sbjct: 205 PDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPV 241
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Query: 124 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
+LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 184 VLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEC 243
+L G E VW++ G LDYLG P L A Q ++ I Q +LM E
Sbjct: 61 LLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLMGAVEG 117
Query: 244 ARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + G
Sbjct: 118 YRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 170
Query: 304 FYIQA 308
F++QA
Sbjct: 171 FFVQA 175
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 120/210 (57%), Gaps = 19/210 (9%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 64 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 123
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 124 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 178
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+IV + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 179 LIVAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 229
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM A LGFY QA TG+G +
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPV 259
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 120/204 (58%), Gaps = 17/204 (8%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA+ E VW++ G L G TL Y G +H+ +I +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGA-SIHI----NLIAAVV 199
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ +L+ G E R E D +PGG FDPL L+KDP F LKVKEIK
Sbjct: 200 AEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIK 250
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + LGF++QA TG+G +
Sbjct: 251 NGRLAMFSMLGFFVQAYVTGEGPV 274
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 112/209 (53%), Gaps = 33/209 (15%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
+ I CQ +LM E R ++ DP AF ELK
Sbjct: 157 LAIWACQVVLMGAVEGYR------------------------------IADDPEAFAELK 186
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
VKEIKNGRLAM + GF++QA TGKG +
Sbjct: 187 VKEIKNGRLAMFSMFGFFVQAIVTGKGPV 215
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 120/210 (57%), Gaps = 19/210 (9%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 177
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
+I+ + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 178 LILAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM A LGFY QA TG+G +
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPV 258
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G +VPE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIP-------INLVVA 186
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 187 VIAEVVLLGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 237
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGFY QA TG+G +
Sbjct: 238 IKNGRLAMFAMLGFYFQAYVTGEGPV 263
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 119/210 (56%), Gaps = 19/210 (9%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 177
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
I+ + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 178 FILAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KVKEIKNGRLAM A LGFY QA TG+G +
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPV 258
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 117/211 (55%), Gaps = 18/211 (8%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE GLS DP F K
Sbjct: 36 KTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRE 87
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 145
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP A
Sbjct: 146 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAL 197
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 198 AELKVKELKNGRLAMFSMFGFFVQAIVTGKG 228
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 115/211 (54%), Gaps = 30/211 (14%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG++ AGLS DP F K
Sbjct: 21 KTTTKKVSSGSPWYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRE 80
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAM W++ LDYLG P L A
Sbjct: 81 LEVIHSRWAMFDR---------------------WFKARSQIFSEGGLDYLGNPSLVHA- 118
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 119 -QSILAIWACQVILMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAF 170
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 171 VELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 201
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 116/204 (56%), Gaps = 17/204 (8%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D +GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 185
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 186 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 236
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM A LGFY QA TG+G +
Sbjct: 237 NGRLAMFAMLGFYFQAYVTGEGPV 260
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 119/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA+ E VW++ G L G TL Y G IP +I
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------INLIAA 197
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP F LKVKE
Sbjct: 198 VVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 248
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 249 IKNGRLAMFSMLGFFVQAYVTGEGPV 274
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 119/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA+ E VW++ G L G TL Y G IP +I
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------INLIAA 197
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP F LKVKE
Sbjct: 198 VVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 248
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 249 IKNGRLAMFSMLGFFVQAYVTGEGPV 274
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 119/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 60 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 119
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA+ E VW++ G L G TL Y G IP +I
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------INLIAA 172
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP F LKVKE
Sbjct: 173 VVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 223
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 224 IKNGRLAMFSMLGFFVQAYVTGEGPV 249
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 32 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 91
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE++ + EPVW++ G LDYLG P L A Q +I Q
Sbjct: 92 ALGCITPELI----GGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIIATLAVQV 145
Query: 236 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+LM E R G + P G D YPG A FDPL P F ELKVKEIKNGR
Sbjct: 146 ILMGQAEAFRAAGY--VVPGGFGEDLDNLYPGDA-FDPLAWLI-PDTFAELKVKEIKNGR 201
Query: 296 LA 297
LA
Sbjct: 202 LA 203
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 115/204 (56%), Gaps = 17/204 (8%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 185
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 186 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 236
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM A LGFY QA TG+G +
Sbjct: 237 NGRLAMFAMLGFYFQAYVTGEGPV 260
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 184
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R + D +PGG FDPL L+KDP LKVKE
Sbjct: 185 VVAEVILVGGAEYFRITNGLGFD--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 235
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+ QA TG+G +
Sbjct: 236 IKNGRLAMFAMLGFFFQAYVTGEGPV 261
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 115/204 (56%), Gaps = 17/204 (8%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 187
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 188 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 238
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM A LGFY QA TG+G +
Sbjct: 239 NGRLAMFAMLGFYFQAYVTGEGPV 262
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P+YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +I
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLIFA 184
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 185 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLANDPDQAALLKVKE 235
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+IQA TG+G +
Sbjct: 236 IKNGRLAMFAMLGFFIQAYVTGEGPV 261
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 115/206 (55%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +IV
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP-------INLIVA 182
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R E D +PGG FDPL L+ DP LKVKE
Sbjct: 183 VIAEVVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLADDPDQAAILKVKE 233
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGFY QA TG+G +
Sbjct: 234 IKNGRLAMFAMLGFYFQAYVTGEGPV 259
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA+ E VW++ G L G TL Y G IP +I
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------INLIAA 197
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP F LKVKE
Sbjct: 198 VVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 248
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 249 IKNGRLAMFSMLGFFVQAYVTGEGPV 274
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 104 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K++A + +YG RP W GP P D P YL GE PGDYG D+ L++ P + +
Sbjct: 13 KSVAPDQDARAPYYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARL 72
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E+++ RWAMLG G L PE+++ + EPVW+ G +DYLG+PG
Sbjct: 73 RTQELMNGRWAMLGITGCLTPELIN-SNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFIN 131
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
A S + + + QALLM E AR + E +P YPGG FDPL S DP
Sbjct: 132 AHS--LFAVIVVQALLMGLAEYARIKFVPEGADPF---------YPGGKTFDPLGFSSDP 180
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
ELKVKEIKNGRLAM+A G + Q A TG
Sbjct: 181 EILAELKVKEIKNGRLAMMAMAGLFAQGAVTG 212
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 117/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 64 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 123
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 176
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 177 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 227
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + L F+IQA TG+G +
Sbjct: 228 IKNGRLAMFSMLAFFIQAYVTGEGPV 253
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 177
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVILVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + F+IQA TG+G +
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPV 254
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 104/171 (60%), Gaps = 10/171 (5%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLVHAQSILAIWA 161
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
CQ +LM E R G PLG L D YPGGA FDPL L++DP AF
Sbjct: 162 CQVVLMGAVEGYRVGG----GPLGEGL--DQLYPGGA-FDPLGLAEDPEAF 205
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 177
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + F+IQA TG+G +
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPV 254
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 120/214 (56%), Gaps = 13/214 (6%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL-GIPGLHLA 222
E++H+RWAMLGALG + PE+L G E VW + ++ LQ + P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWVQGWFTDLQRRRIGPTWATPSLVHA 155
Query: 223 GSQ--GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
+ + L+ R + PLG D+ YPGG+ FDPL L+ DP
Sbjct: 156 QEHFSHLGYSSYPHGSLL------RATRVPGNGPLGEAE--DLLYPGGS-FDPLGLATDP 206
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 207 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 103/172 (59%), Gaps = 8/172 (4%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP AF K E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P +L +Q ++ + Q ++M E R G++ + G+
Sbjct: 61 AQIFTEGGLDYLGNP--NLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVG------EGN 112
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 113 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 164
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW
Sbjct: 2 RFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVW 60
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EALEPL 255
++ G LDYLG P +L +Q ++ I CQ +LM E R G E L+PL
Sbjct: 61 FKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 118
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGM 315
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 119 ---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 168
Query: 316 I 316
I
Sbjct: 169 I 169
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 116/203 (57%), Gaps = 21/203 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 184
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R + D +PGG FDPL L+KDP LKVKE
Sbjct: 185 VVAEVILVGGAEYFRITNGLGFD--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 235
Query: 291 IKNGRLAMVAWLGFYIQAAFTGK 313
IKNGRLAM A LGF++QA TG
Sbjct: 236 IKNGRLAMFAMLGFFLQAYVTGD 258
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+L G++ PG +DP LSK P FE+ + E+ + R AM+ GF I AF G
Sbjct: 94 YLTGEV--PGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFG 148
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL-DMV 188
+ +P TGE PGDYG+D AGLS DP F++Y E++HAR +LGALG + PE+L D
Sbjct: 70 HQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADED 129
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G +W++ G + Q L+YLG P L A Q ++ Q +LM E R G
Sbjct: 130 GIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHA--QNIVATLAVQVVLMGLVEGYRVNG 187
Query: 249 ---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
E L+PL YPG A FDPL L+ DP F ELKVKEIKNGRLAM A LGF+
Sbjct: 188 GPAGEGLDPL---------YPGEA-FDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFF 237
Query: 306 IQAAFTGKGMI 316
+QA TGKG I
Sbjct: 238 VQAIVTGKGPI 248
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 106/202 (52%), Gaps = 36/202 (17%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G LPG LKVKEIK
Sbjct: 166 FQVVLMGLVEGYRING----------LPG------------------------LKVKEIK 191
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 192 NGRLAMFSMFGFFVQAIVTGKG 213
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 115/206 (55%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA GA++PE + GA E VW++ G L G TL Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIP-------INLVVA 177
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + F+IQA TG+G +
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPV 254
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 106/202 (52%), Gaps = 36/202 (17%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 43 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G LPG LKVKEIK
Sbjct: 161 FQVVLMGLVEGYRING----------LPG------------------------LKVKEIK 186
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 187 NGRLAMFSMFGFFVQAIVTGKG 208
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 117/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL Y G IP +++
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIP-------INLVLA 181
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 182 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 232
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF+IQA TG+G +
Sbjct: 233 IKNGRLAMFSMLGFFIQAYVTGQGPV 258
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P+YL GE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 173
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LK KE
Sbjct: 174 VIAEVVLLGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKAKE 224
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF++QA TG+G +
Sbjct: 225 IKNGRLAMFAMLGFFLQAYVTGEGPV 250
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 107/178 (60%), Gaps = 10/178 (5%)
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
E PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVW 59
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIF 258
++ G LDYLG P L +Q ++ + Q +LM E R G PLG
Sbjct: 60 FKAGSQIFSEGGLDYLGNP--SLVHAQSILTVWATQVILMGAVEGYRIAG----GPLGEV 113
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ D YPGG+ FDPL L++ P AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 114 V--DPLYPGGS-FDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 168
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 119/220 (54%), Gaps = 21/220 (9%)
Query: 110 ARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A N WYG +R +L YD P+YL GEL GDYG+D GL KD KY +E+
Sbjct: 43 AVNLDKWYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYEL 102
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
LHARWAML A G L+PE L GA ++ VW+ G L G TL+Y +P ++
Sbjct: 103 LHARWAMLAAAGILIPEGLQANGA-NIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLP 161
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPL 274
+ + + LM E R G P G + PG D YPGG FDPL
Sbjct: 162 LFAVIAIEVGLMGAVEFYRRNGT---GPAG-YSPGIGKFDSSVFEGLDSIYPGGP-FDPL 216
Query: 275 NLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L+ DP F+ELKVKEIKNGRLAMV+ L F IQ+ TG+G
Sbjct: 217 GLADDPEVFQELKVKEIKNGRLAMVSVLAFAIQSYVTGEG 256
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 108/205 (52%), Gaps = 37/205 (18%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
I CQ +LM E R G PLG +VK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLG------------------------------EVK 198
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
E+KNGRLAM + GF++QA TGKG
Sbjct: 199 ELKNGRLAMFSMFGFFVQAIVTGKG 223
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 118/215 (54%), Gaps = 23/215 (10%)
Query: 109 QARNESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
A N+ L WYG +R +L D P YL GE+ GDYG+D GL K P F KY
Sbjct: 56 SAANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQA 115
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHL 221
FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL Y G IP
Sbjct: 116 FELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIP---- 171
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
+++ + + +L+ G E R E D +PGG FDPL+L+KDP
Sbjct: 172 ---INLVLAVVGEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLDLAKDPE 219
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 220 QGALLKVKEIKNGRLAMFSMFAFFIQAYVTGEGPV 254
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 107/189 (56%), Gaps = 10/189 (5%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 22 KTVAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 81
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 82 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 140
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 141 A--QSILAIWATQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPK 191
Query: 282 AFEELKVKE 290
AF ELKV E
Sbjct: 192 AFAELKVNE 200
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 113/195 (57%), Gaps = 11/195 (5%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ R ++LGP ++PSYLTGE PGDYG+D AGLS P F K E++H+R AM ALG
Sbjct: 56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L ++G E VW++ G LDYLG P L +Q ++ I + +LM
Sbjct: 116 CIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWTTKVILM 172
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
E R A PLG D YPG FD L L++D AF ELKVKE+KNGRLAM
Sbjct: 173 GAVEGYRI----ARGPLGEVT--DPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAM 224
Query: 299 VAWLGFYIQAAFTGK 313
+ GF++QA + K
Sbjct: 225 FSMFGFFVQAIVSRK 239
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 115/214 (53%), Gaps = 21/214 (9%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML A G L+PE L GA ++ W+ G L G TL+Y +P ++ + +
Sbjct: 112 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 170
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNLSKDP 280
+ LM E R G P G + PG D YPGG FDPL L+ DP
Sbjct: 171 VEVGLMGAVEFYRRNGT---GPAG-YSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDP 225
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ELKVKEIKNGRLAMV+ LGF +Q+ TG+G
Sbjct: 226 EVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEG 259
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 179
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 180 VVAEVVLLGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 230
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+IQA TGKG +
Sbjct: 231 IKNGRLAMFAMLGFFIQAYVTGKGPV 256
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKA 59
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
G LDYLG P +L +Q ++ I CQ +LM E R G PLG L
Sbjct: 60 GAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL-- 111
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D YPGGA FDPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 112 DKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 165
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 118/218 (54%), Gaps = 21/218 (9%)
Query: 112 NESLWYGEERPRWL--GPIPYDYPS-YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
N WYG +R +L G + D + L G LPGDYG+D GL+KD KY E+LH
Sbjct: 44 NLDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLH 103
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAML A GA++PE L GA + W+ G + L G TL++ +P +++ +
Sbjct: 104 ARWAMLAAAGAIIPEGLAANGA-DVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLF 162
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNL 276
V+ LM E R G E + PG D YPGG FDPL L
Sbjct: 163 VVVAANVALMGAAENYRRTG----EGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGL 217
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ DP ELKVKEIKNGRLAMV++LGF +QAA TG+G
Sbjct: 218 ADDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEG 255
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +IV
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVA 177
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VAAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF+IQA TG+G +
Sbjct: 229 IKNGRLAMFSMLGFFIQAYVTGEGPV 254
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GL + P F KY +E++HARWA
Sbjct: 84 WYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWA 143
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA+ E VW++ G L G TL Y G IP +I
Sbjct: 144 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------INLIAA 196
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R + D +PGG FDPL L+KDP F LKVKE
Sbjct: 197 VVAEVVLVGGAEYYRATNGLNFD--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 247
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF++QA TG+G +
Sbjct: 248 IKNGRLAMFSMLGFFLQAYVTGEGPV 273
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +IV
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVA 177
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VAAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF+IQA TG+G +
Sbjct: 229 IKNGRLAMFSMLGFFIQAYVTGEGPV 254
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEER-----PRWLGPI-----------PYDYPSYLT 137
K A + + + K A R + W+GE +W GP P D P+YL
Sbjct: 59 KTASKATKQVKKAASGKRTKG-WFGEAGGAQGLDKWYGPSRALFLPGGLLDPSDVPTYLN 117
Query: 138 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197
G L GDYG+D GL KD +KY +E++HARWAML A G ++PE L GA +
Sbjct: 118 GTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGA-AIKGGT 176
Query: 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG- 256
W+ G L G TL+Y +P + + ++ + + L+ E R G P G
Sbjct: 177 WFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYRQSG---EGPPGY 233
Query: 257 ----------IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
IF D YPGG FDPL L+ DP F ELKVKEIKNGRLA+++ LGF +
Sbjct: 234 SPGVGKFDSSIFSGLDNLYPGGP-FDPLGLADDPETFAELKVKEIKNGRLALISVLGFAV 292
Query: 307 QAAFTGKG 314
Q+ TG+G
Sbjct: 293 QSYVTGEG 300
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 114/219 (52%), Gaps = 31/219 (14%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML A G L+PE L GA ++ W+ G L G TL+Y +P ++ + +
Sbjct: 82 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 140
Query: 233 CQALLMVGPECARYCG-----------------IEALEPLGIFLPGDINYPGGALFDPLN 275
+ LM E R G + L+PL YPGG FDPL
Sbjct: 141 VEVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPL---------YPGGP-FDPLG 190
Query: 276 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L+ DP +ELKVKEIKNGRLAMV+ LGF +Q+ TG+G
Sbjct: 191 LADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEG 229
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 106/175 (60%), Gaps = 11/175 (6%)
Query: 141 PGDYGFDVA-GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
PGDYG+D + GLS DP F K E++H+RWAMLGALG + PE+L G E VW+
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWF 59
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFL 259
+ G LDYLG P L +Q ++ I Q +LM E R G PLG +
Sbjct: 60 KAGAQIFSEGGLDYLGNP--SLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVV 113
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 114 --DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 165
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 112/202 (55%), Gaps = 17/202 (8%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GL K P F KY FE++HARWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE L+ GA E VW++ G L G TL+Y G S + +I
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------NSIPINLILA 180
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
A +++ Y LE D +PGG FDPL L+ DP LKVKEIK
Sbjct: 181 VVAEVVLVGGAEYYRITNGLE------FDDKLHPGGP-FDPLGLATDPDQAALLKVKEIK 233
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + LGF+IQA TG+G
Sbjct: 234 NGRLAMFSMLGFFIQAYVTGEG 255
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 105/181 (58%), Gaps = 16/181 (8%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L +Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNP--SLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGEVV--D 111
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA ++LV W
Sbjct: 112 PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQA------IVLVKVHW 164
Query: 323 R 323
R
Sbjct: 165 R 165
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 107/204 (52%), Gaps = 34/204 (16%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP ++ P AF + E++H RWA
Sbjct: 45 NELWYGPDRVKYLGPFS----------------------AQTPFAFARNRALEVIHGRWA 82
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EP+W++ G LDYLG P +L +Q ++ +
Sbjct: 83 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 140
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKE 290
Q +LM E R G+ + GD N YPGG FDPL L+ DPV F ELKVKE
Sbjct: 141 FQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFAELKVKE 192
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKG 314
IKNGRLAM + GF++QA TGKG
Sbjct: 193 IKNGRLAMFSMFGFFVQAIVTGKG 216
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 114/204 (55%), Gaps = 17/204 (8%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G ++PE + GA E VW++ G L G TL+Y G S + +I
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------NSIPINLILA 180
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
A +++ Y I L+ D +PGG FDPL L+ DP LKVKEIK
Sbjct: 181 VVAEVVLVGGAEYYRIINGLDLE------DKLHPGGP-FDPLGLASDPDQAALLKVKEIK 233
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + LGF+IQA TG+G +
Sbjct: 234 NGRLAMFSMLGFFIQAYVTGEGPV 257
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 124/226 (54%), Gaps = 29/226 (12%)
Query: 104 KALARQARNESLWYGEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLS 152
KA A + G+E +W GP +P + P YL GE+PGDYG+D GLS
Sbjct: 45 KAKPATASSSGSDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLS 104
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
K+P F +Y +E++HARWAMLGA G ++PE + GA E VW++ G L+G TL+
Sbjct: 105 KNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLN 164
Query: 213 YLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
Y G IP + V + + +L+ G E R LE D +PGG
Sbjct: 165 YFGNSIP-------INLAVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP- 208
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA TG+G +
Sbjct: 209 FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPV 254
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PG+YG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +I+
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLILA 180
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 181 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 231
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + LGF+IQA TG+G +
Sbjct: 232 IKNGRLAMFSMLGFFIQAYVTGQGPV 257
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
+ + Q +LM E R G++ + G+ YPGG FDPL L+ D
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADD 202
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 109/197 (55%), Gaps = 15/197 (7%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
GE+RP W + P++LTGE PGD GFD GL+KDP F K+ + E+ H RWAMLG +
Sbjct: 148 GEKRPTWFPGA--EAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLV 205
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G LVPEV +G L P W+ + LDYLG P +L + V IA+ LL
Sbjct: 206 GCLVPEVFGNLGIAQL--PAWYDAA-TVANTSNLDYLGNP--NLVHASNVSFIALSTLLL 260
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
M E R+ G A E YPGG FDPL L P ELK+KEIKNGRLA
Sbjct: 261 MGPVEAWRWNGALASEAKSA---ERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLA 312
Query: 298 MVAWLGFYIQAAFTGKG 314
MV GF+ Q+ TG+G
Sbjct: 313 MVGMFGFWAQSYVTGEG 329
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 109/197 (55%), Gaps = 15/197 (7%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
GE+RP W + P++LTGE PGD GFD GL+KDP F K + E+ H RWAMLG +
Sbjct: 357 GEKRPTWFPGA--EAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLV 414
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G LVPEV +G L P W+ G G +LDYLG P +L + V +I LL
Sbjct: 415 GCLVPEVFGNLGIAQL--PAWYEAGAVANTG-SLDYLGNP--NLVHASNVPLIFFTTLLL 469
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
+ E R+ G A E YPGG FDPL L P ELK+KEIKNGRLA
Sbjct: 470 FLPIEAWRWNGQIAPEAKSA---ERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLA 521
Query: 298 MVAWLGFYIQAAFTGKG 314
MV GF+ Q+ TG+G
Sbjct: 522 MVGMFGFWAQSYVTGEG 538
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 182 PEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP 241
PEV +G L P W+ G G +LDYLG P +L + V +I LL +
Sbjct: 1 PEVFGNLGIAQL--PAWYEAGAVANTG-SLDYLGNP--NLVHASNVPLIFFTTLLLFLPI 55
Query: 242 ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
E R+ G A + YPGG FDPL L P ELK+KEIKNGRLAMV
Sbjct: 56 EAWRWNGQIAPDAKSKEW---TTYPGGP-FDPLKLGASP----ELKLKEIKNGRLAMVGM 107
Query: 302 LGFYIQAAFTGKG 314
GF+ Q+ TG+G
Sbjct: 108 FGFWAQSYVTGEG 120
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALWRE 324
YPG FDPL L+KDP F + + E+ +GR AM+ +G + F G+ + A W E
Sbjct: 377 YPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLGIAQLPA-WYE 435
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320
YPG FDP L+KDP F + + E+ +GR AM+ +G + F G+ + A
Sbjct: 168 YPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQLPA 223
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK+P F +Y +E++HARWA
Sbjct: 65 WYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L+G TL+Y G IP I +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIP----------INL 174
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
A+ +V A Y I G+ L G + +PGG FDPL L+ DP LKVKE
Sbjct: 175 AVAVVAEVVLVGGAEYYRIIN----GLDLEGKL-HPGGP-FDPLGLASDPDQAAPLKVKE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM LGF+IQA TG+G +
Sbjct: 229 IKNGRLAMFPMLGFFIQAYVTGEGPV 254
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+IQA TG+G +
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPV 251
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 117/207 (56%), Gaps = 23/207 (11%)
Query: 116 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
WYG +RP++L P P D P+Y+ GEL GDYG+D GL + +KY +E+LH RW
Sbjct: 58 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIPG---LHLAGSQGV 227
AMLG +G LVPE L G ++ VWW G L TL + GIP L LA
Sbjct: 116 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALA----- 170
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
++ + L+ E RY + P G L D YPGG FDPL L+ DP +ELK
Sbjct: 171 VIFEVAVFFLI---ENYRY---QQDGPWGTGL--DPLYPGGKYFDPLGLASDPSKADELK 222
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM+A+LGF +Q T +G
Sbjct: 223 VKEIKNGRLAMMAFLGFVVQYFVTKEG 249
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP AF + E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P +L +Q ++ + Q +LM E R G++ + G+
Sbjct: 61 AQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG------EGN 112
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++
Sbjct: 113 DLYPGGQYFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 108/186 (58%), Gaps = 18/186 (9%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 193 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G L G TL+Y G IP +IV + +L+ G E R
Sbjct: 84 GPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVAVAAEVVLVGGAEYYRIINGL 136
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
LE D +PGG FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA
Sbjct: 137 DLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYV 187
Query: 311 TGKGMI 316
TG+G +
Sbjct: 188 TGEGPV 193
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWA+LGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWALLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
++ + Q +LM E R G++ + G+ YP G FDPL L+ DP F
Sbjct: 160 ILAVLGFQVVLMGLAEGFRINGLDGVG------EGNNLYPXGQYFDPLGLADDPTTF 210
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 108/186 (58%), Gaps = 18/186 (9%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 193 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E VW++ G L G TL+Y G IP +IV + +L+ G E R
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVAVAAEVVLVGGAEYYRIINGL 115
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
LE D +PGG FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA
Sbjct: 116 DLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYV 166
Query: 311 TGKGMI 316
TG+G +
Sbjct: 167 TGEGPV 172
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGSEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+IQA TG+G +
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPV 251
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM A LGF+IQA TG+G +
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPV 251
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 115/214 (53%), Gaps = 21/214 (9%)
Query: 116 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG ER +L G + D P YL GEL GDYG+D GL KD +KY E+LHARWA
Sbjct: 46 WYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML A G L+PE L GA + W+ G L G TL+Y +P + + + +
Sbjct: 106 MLAAAGILIPEGLQANGA-DIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTL 164
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNLSKDP 280
+ +L+ E R ++ P G F PG D YPGG FDPLNL+ DP
Sbjct: 165 IEIVLLGAVEKFR---VDGTGPAG-FSPGVGKFDSDIFDGLDQLYPGGP-FDPLNLADDP 219
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
F EL+VKE KNGRLAMV L F IQ+ TG+G
Sbjct: 220 EVFAELQVKETKNGRLAMVGVLAFAIQSYVTGEG 253
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + +P + L T+K+A + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLTPSSQELGASRFTTRKSATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR---WAMLGALGALVPEVL 185
+ PSYLTGE PGDYG+D AGLS DP F K + W + +
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPW----DVSSQSF 118
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
V + V+ ++ G LDYLG P L Q ++ I Q +LM E R
Sbjct: 119 CPVTVLNSVKLCGFKAGSQIFSEGGLDYLGNP--SLGSRQSILAIWATQVILMGAVEGYR 176
Query: 246 YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
G PLG + D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF+
Sbjct: 177 IAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFF 229
Query: 306 IQAAFTGKG 314
+QA TGKG
Sbjct: 230 VQAIVTGKG 238
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 116/207 (56%), Gaps = 23/207 (11%)
Query: 116 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
WYG +RP++L P P D P+Y+ GEL GDYG+D GL +KY +E+LH RW
Sbjct: 65 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRW 122
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIPG---LHLAGSQGV 227
AMLG +G LVPE L G ++ VWW G L TL + GIP L LA
Sbjct: 123 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALA----- 177
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
++ + L+ E RY + P G L D YPGG FDPL L+ DP +ELK
Sbjct: 178 VIFEVAVFFLI---ENYRY---QQDGPWGTGL--DPLYPGGKYFDPLGLASDPSKADELK 229
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
VKEIKNGRLAM+A+LGF +Q T +G
Sbjct: 230 VKEIKNGRLAMMAFLGFVVQYFVTKEG 256
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 103/172 (59%), Gaps = 10/172 (5%)
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQ 59
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN 264
LDYLG P +L +Q ++ I Q +LM E R G PLG L D
Sbjct: 60 IFSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGG----GPLGEGL--DKV 111
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 112 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 162
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIF 59
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 266
LDYLG P L A Q ++ I CQ +LM E R G PLG + D YP
Sbjct: 60 SEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYP 111
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
GG+ FDPL L+ DP AF ELKVKEIKNG LAM + GF++QA TGKG
Sbjct: 112 GGS-FDPLGLADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKG 158
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 60
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 267
LDYLG P L +Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 61 EGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPLYPG 112
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 113 GS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 158
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDP 202
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--D 111
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 112 PLYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 262
LDYLG P L A Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNPTLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--D 111
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 112 PLYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 100/183 (54%), Gaps = 13/183 (7%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 54 KTVSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 114 HCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 170
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL---SKDPVAFE 284
+ I Q LLM E R G PLG + D YPGG+ FDPL L SK P A
Sbjct: 171 LAIWATQVLLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLARRSKTPFASS 223
Query: 285 ELK 287
+
Sbjct: 224 NVN 226
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 98/169 (57%), Gaps = 16/169 (9%)
Query: 138 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197
GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E V
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAV 59
Query: 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEP 254
W++ G LDYLG P +L +Q ++ I CQ +LM E R G E L+P
Sbjct: 60 WFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 117
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
L YPGGA FDPL L+ P F ELKVKE+KNGRLAM + G
Sbjct: 118 L---------YPGGA-FDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
Q +LM E R G PLG L DI YPGGA
Sbjct: 161 VQVVLMGFIEGYRVGG----GPLGEGL--DIIYPGGA 191
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 95/168 (56%), Gaps = 7/168 (4%)
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGAQIFQD 59
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268
L+YLG L +Q ++ Q LLM E R G P G D YPGG
Sbjct: 60 GGLNYLGNE--SLVHAQSILATLAVQVLLMGAAESYRANGGA---PGGFGEDLDSLYPGG 114
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
A FDPL L+ DP ELKVKEIKNGRLAM + GF++QA TG+G I
Sbjct: 115 A-FDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPI 161
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 124/233 (53%), Gaps = 30/233 (12%)
Query: 33 LALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKA-IANSP-LGELLQNRML 90
L + S NL +S +V KA A + +P +A+KA +AN+ L N M
Sbjct: 20 LCYRSSGSNL----QSGIVAKAPTGIQARGTAAANMPRSALKAGLANAARLSPKQFNAMK 75
Query: 91 ETKKAALQDSSK----FKALARQA--------RNESL-------WYGEERPRWLGPIPY- 130
K A Q ++ F+ LA++A N++L WYG +RP+WL P +
Sbjct: 76 NAGKIATQMGARTVADFRDLAQEAVCHMGQTSGNKALMGACNVEWYGPDRPKWL-PDAFL 134
Query: 131 -DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
P YLTGE PGDYG+D GLS DP F Y E+LHARWAMLGALG + PEV++
Sbjct: 135 AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAMLGALGCVFPEVINSYY 194
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPE 242
++ EPVWW+ G L G+++DYLG A S +I IA Q +LM G E
Sbjct: 195 NGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASS--IIAIAGAQVVLMGGAE 245
>gi|294461908|gb|ADE76510.1| unknown [Picea sitchensis]
Length = 146
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 86/158 (54%), Gaps = 49/158 (31%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
CKASWQELAGVL+FSAIPFTAVKAIANSPL LQ RM TK A++++ + +A ++AR
Sbjct: 37 CKASWQELAGVLIFSAIPFTAVKAIANSPLAARLQERMQGTKSLAMKEAPEREAATQRAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
ES +E+LHARW
Sbjct: 97 KES-------------------------------------------------YEVLHARW 107
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
AML ALG ++PE+LD G +EPVWWRVGY+KL+
Sbjct: 108 AMLAALGVVIPELLDRFGVVDFIEPVWWRVGYAKLKAR 145
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L A S I+
Sbjct: 104 MLGALGCVFPEILCKNG-LKFGEAVWFKAGPQIFFEGGLDYLGHPNLVHAQSFLPILGGA 162
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
A E + + PL L DI YPGGAL+ PL LS DP
Sbjct: 163 SGAH-----EASSRATVLVAAPL---LGPDIIYPGGALY-PLGLSADP 201
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 40/213 (18%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P+YL G LPGD+GFD GL +DP + + Y E++H+R+AMLG LG
Sbjct: 56 QQRPTWLPGL--DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LV ++L + G + P+W+ G K + A + ++V+ Q LLM
Sbjct: 114 ILVTDLLRVAGVNSI--PIWFEAGAVKYE-------------FANTGTLVVV---QLLLM 155
Query: 239 VGPECARYC---------------GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 283
E RY G+EA LG PG YPGG L +PL L+KD +
Sbjct: 156 GYAETRRYMDFVSPGSQAKEGSFFGLEA--SLGGLEPG---YPGGPLLNPLGLAKDIKSA 210
Query: 284 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E K+KEIKNGRLAMVA LG ++QA+ T G I
Sbjct: 211 REWKLKEIKNGRLAMVAILGIFVQASVTHVGPI 243
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
D F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDY 59
Query: 214 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 60 LGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIT--DPLYPGGS-FDP 110
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 111 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 151
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 109/209 (52%), Gaps = 30/209 (14%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +RP WL + D P +L G LPGD+GFD GL +DP + + Y E++H R+AM G
Sbjct: 56 GTQRPTWLPGL--DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVA 113
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G L ++L + G L PVW+ G +K + A + + + Q LL
Sbjct: 114 GILFTDLLRVSGNSDL--PVWFEAGAAKFE-------------FANTTALFFV---QLLL 155
Query: 238 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 287
M E RY G +A E I L + YPGG LF+PL L+KD E K
Sbjct: 156 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEK 215
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 216 LKEIKNGRLAMVAMLGFMVQASVTHAGPI 244
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 93/204 (45%), Gaps = 67/204 (32%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 69
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+ L G+ + ++ I
Sbjct: 70 MLGALGCVFPEI-----------------------------LSKNGVKFGEAVCILAIWA 100
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R ELKVKEIK
Sbjct: 101 CQVVLMGFVEGYRV--------------------------------------ELKVKEIK 122
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 123 NGRLAMFSMFGFFVQAIVTGKGPI 146
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 2 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 59
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LV ++L + G + PVW+ G K + +Q +I++ Q LLM
Sbjct: 60 ILVTDLLRVTGLSKI--PVWFEAGAVKYE-------------FTNTQTLIIV---QLLLM 101
Query: 239 VGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
E RY E LEP YPGG L +PL L+KD
Sbjct: 102 GFAETKRYMDFISPGSQAKEGSFFGLEASFEGLEP---------GYPGGPLLNPLGLAKD 152
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E K+KEIKNGRLAMVA LG ++QA+ T G I
Sbjct: 153 IKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPI 189
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 55 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 112
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LV ++L + G + PVW+ G K + +Q +I++ Q LLM
Sbjct: 113 ILVTDLLRVTGLSKI--PVWFEAGAVKYE-------------FTNTQTLIIV---QLLLM 154
Query: 239 VGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
E RY E LEP YPGG L +PL L+KD
Sbjct: 155 GFAETKRYMDFIGPGSQAKEGSFFGLEASFEGLEP---------GYPGGPLLNPLGLAKD 205
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E K+KEIKNGRLAMVA LG ++QA+ T G I
Sbjct: 206 IKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPI 242
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 12 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 71
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 72 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 128
Query: 230 IAICQALLMVGPECARYCG 248
I CQ +LM E R G
Sbjct: 129 IWACQVILMGAIEGYRVAG 147
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGL 219
LDYLG P L
Sbjct: 139 FSEGGLDYLGNPNL 152
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 111/202 (54%), Gaps = 20/202 (9%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P YL G LPGDYGFD GL ++P + Y E++H R+AM G G
Sbjct: 51 ERATWLPGL--DPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGI 108
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L +++ + G +L PVW+ G +K L L L G + + + +V
Sbjct: 109 LGTDLIRVSGISNL--PVWFEAGATKFDFANTTALFFVQLLLMG-----FVETKRYMDIV 161
Query: 240 GP----ECARYCGIEA-LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
P E + GIEA LE L PG YPGG LF+P+ L+KD E+K+KEIKNG
Sbjct: 162 NPGSQAEEGTFLGIEASLEGL---QPG---YPGGPLFNPMGLAKDIKNAHEVKLKEIKNG 215
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAMVA LGF++QA+ T G I
Sbjct: 216 RLAMVAMLGFFVQASVTHVGPI 237
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 111/210 (52%), Gaps = 35/210 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P YL G+L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--DPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 240 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 286
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYVDYVSPGSQAKE--GSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDW 202
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
K+KEIKNGRLAM+A LGF++QA+ T G I
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLMVGPECARYC 247
A Q ++ I Q LLM G + C
Sbjct: 156 A--QSILAIWATQVLLMGGRRGYKGC 179
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 23/260 (8%)
Query: 66 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYG 118
SA + + A+A S ++ T KA+ + + AR A +
Sbjct: 3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAAD 62
Query: 119 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA
Sbjct: 63 PDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 119
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G +PE+L +G L P W+ G + +T + + + ++G I +
Sbjct: 120 GIFIPELLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIK--- 174
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRL 296
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRL
Sbjct: 175 ---PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 228
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM+A +G + Q +TG G I
Sbjct: 229 AMLAVMGAWFQHIYTGTGPI 248
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 58 QQRPTWLPGL--DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L ++L + G L PVW+ G K + A ++ ++V+ Q L M
Sbjct: 116 ILFTDLLRVTGIRKL--PVWYEAGAVKYE-------------FASTRTLLVV---QLLWM 157
Query: 239 VGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
E RY +E LEP YPGG L +P L+KD
Sbjct: 158 GYAETRRYMDYVSPGSQNKEGSFFGMEAALEGLEP---------GYPGGPLLNPFGLAKD 208
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ + K+KEIKNGRLAMVA LG ++QAA T G I
Sbjct: 209 IRSARDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGPI 245
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 37 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 96
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 97 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 153
Query: 233 CQALLMVGPECARYCG 248
Q +LM E R G
Sbjct: 154 SQVVLMGFVEGYRVGG 169
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 35/210 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 37 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 94
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 95 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 136
Query: 240 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 286
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 137 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 194
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
K+KEIKNGRLAM+A LGF++QA+ T G I
Sbjct: 195 KLKEIKNGRLAMMAMLGFFVQASVTHTGPI 224
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 110/206 (53%), Gaps = 26/206 (12%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GD+GFD GL +DP + Y E++HAR+AM G G
Sbjct: 54 QQRPTWLPGL--DPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LV ++L + G +L PVW+ G K + + + L I L L G + + +
Sbjct: 112 ILVTDLLRVTGISNL--PVWYEAGAVKFEFASTEALFIVQLILMG-----FVETKRYMDF 164
Query: 239 VGP----ECARYCGIEA----LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
P + + G+EA LEP YPGG L +PL L++D + K+KE
Sbjct: 165 TNPGSQAKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLARDIKNAHDWKLKE 215
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAMVA LG ++QA+ T G I
Sbjct: 216 IKNGRLAMVAMLGVFVQASVTHAGPI 241
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 35/210 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 240 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 286
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 202
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
K+KEIKNGRLAM+A LGF++QA+ T G I
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 35/210 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 240 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 286
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDW 202
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
K+KEIKNGRLAM+A LGF++QA+ T G I
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 108/219 (49%), Gaps = 48/219 (21%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
+ ++RP WL + D P YL G L GD+GFD GL +DP + + Y E++HAR+AM G
Sbjct: 53 HAQQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGV 110
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G L ++L + G L PVW+ G K + A ++ +IV+ Q L
Sbjct: 111 AGILFTDLLRVTGIRKL--PVWYEAGAVKFE-------------FASTRTLIVV---QLL 152
Query: 237 LMVGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLS 277
LM E RY +E LEP YPGG L +PL L+
Sbjct: 153 LMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGLEP---------GYPGGPLLNPLGLA 203
Query: 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+D K+KEIKNGRLAMVA +G ++QAA T G I
Sbjct: 204 RDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPI 242
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 114/236 (48%), Gaps = 29/236 (12%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
ML+T+ + S+ A R R+ + E RP W+ PS+L G LPGDYGFD
Sbjct: 4 MLKTQFGTQRISTHISATKRTVRSSVIASAESRPLWMPGTAA--PSHLKGMLPGDYGFDP 61
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
L +D Y E+ HARWAMLG G PE+L M G L P W +
Sbjct: 62 LNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSDL--PNWHDAPF----- 114
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-----ALEPL--GIFLP- 260
Y G + A S + + Q +M E R+ I+ + +P G LP
Sbjct: 115 ----YNG----YFASSTTLFTV---QMFMMNWAEIRRWQDIKNPGSVSEDPAFPGNKLPA 163
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GD+ YPGG +F+P+N K + LK KEI NGRLAMVA LG +IQ TG G +
Sbjct: 164 GDVGYPGG-IFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDHTGVGPV 218
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 27/244 (11%)
Query: 82 GELLQNRMLETKKAALQDSSKFKALARQARNESLWYG-EERPRWLGPIPYDYPSYLTGEL 140
G L N+ L+ A + S A R G ++RP WL + D P +L G L
Sbjct: 14 GSLFNNKSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQRPTWLPGL--DPPPHLDGTL 71
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
GD+GFD GL++DP + + Y E++H R+AMLG G LV ++L + G + PVW+
Sbjct: 72 AGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKI--PVWFE 129
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP----ECARYCGIEA----L 252
G K L + L L G + + + V P + + G+EA L
Sbjct: 130 AGAVKYDFANTKTLFLVQLVLMG-----FVETKRYMDFVSPGSQAKEGSFFGLEASLKGL 184
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
EP YPGG L +PL L+KD + K+KEIKNGRLAMVA LG ++QA+ T
Sbjct: 185 EP---------GYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTH 235
Query: 313 KGMI 316
G I
Sbjct: 236 VGPI 239
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 103/214 (48%), Gaps = 47/214 (21%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GD+GFD GL +DP + + Y E++H+R+AM G G
Sbjct: 62 QQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L ++L G +L PVW+ G +K Q + I Q LLM
Sbjct: 120 ILFTDLLRTTGLSNL--PVWYEAGATKFQ----------------FANTTTLFIVQMLLM 161
Query: 239 VGPECARY------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
E RY +E LEP YPGG + +PL ++KD
Sbjct: 162 GFVETKRYMDFKNPGSQGEASFFGLEAALEGLEP---------GYPGGPILNPLGIAKDI 212
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
E K+KEIKNGRLAMVA LG ++QA+ T G
Sbjct: 213 KNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVG 246
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P+ EL +R + T +A +Q + K+ + R YG +R +LGP PSYLTGE
Sbjct: 27 PVNEL--SRKVGTSEARVQMMAPKKSSSGNIR-----YGADRLLYLGPFSGSPPSYLTGE 79
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW+
Sbjct: 80 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG-VKFGEAVWF 138
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
+ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 139 KAGSQIFADGGLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYR 182
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 109/202 (53%), Gaps = 20/202 (9%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P+YL G LPGDYGFD GL + P + Y E++H R+AM G G
Sbjct: 49 ERATWLPGL--DPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGI 106
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L +++ + G +L PVW+ G +K L L L G + + + V
Sbjct: 107 LGTDLIRVSGIGNL--PVWFEAGATKFDFANTTALFFVQLLLMG-----FVETKRYMDFV 159
Query: 240 GP----ECARYCGIEA-LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 294
P + + GIEA LE L PG YPGG LF+P+ L+KD E+K+KEIKNG
Sbjct: 160 SPGSQAKEGTFLGIEASLEGL---QPG---YPGGPLFNPMGLAKDIENANEVKLKEIKNG 213
Query: 295 RLAMVAWLGFYIQAAFTGKGMI 316
RLAMVA LGF +QA+ T G I
Sbjct: 214 RLAMVAMLGFIVQASVTHAGPI 235
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G +P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 56 DRPIWFPGSVP---PPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAG 112
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 113 IFIPEFLTKIGI--LSTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK---- 166
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 167 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLA 221
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 222 MLAVMGAWFQAEYTGTGPI 240
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 91/154 (59%), Gaps = 16/154 (10%)
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++H+RWAMLGALG PE+L+ G E VW++ G LDYLG P +L +Q
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQ 57
Query: 226 GVIVIAICQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 282
++ I Q +LM E R G E L+PL YPGGA FDPL L+ DP A
Sbjct: 58 SILAIWATQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDA 107
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
F ELKVKE+KNGRLAM + GF++QA TGKG +
Sbjct: 108 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 141
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 108/212 (50%), Gaps = 40/212 (18%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L +++ + G +L PVW+ G +K D+ L Q LLM
Sbjct: 111 LATDLIRVSGINNL--PVWFEAGATKF-----DFANTTALFF-----------VQLLLMG 152
Query: 240 GPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAFE 284
E RY G +A E G FL PG YPGG LF+PL L+KD +
Sbjct: 153 FAETKRYMDFINPGSQAEE--GTFLGIEAALAGSQPG---YPGGPLFNPLGLAKDIENAD 207
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E K+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 208 EAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 30/209 (14%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 158
Query: 238 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 287
M E RY G +A E I L + YPGG LF+PL L+KD + K
Sbjct: 159 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEK 218
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 219 LKEIKNGRLAMVAMLGFMVQASVTHAGPI 247
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNGV-QFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 35/210 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FACTKTLIVV---QFLLMG 144
Query: 240 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 286
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 202
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
K+KEIKNGRLAM+A LGF++QA+ T G I
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 107/214 (50%), Gaps = 40/214 (18%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 105 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 162
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 163 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 204
Query: 238 MVGPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVA 282
M E RY G +A E G F+ PG YPGG LF+PL L+KD
Sbjct: 205 MGFAETKRYMDFKNPGSQAEE--GTFIGLEAALAGQQPG---YPGGPLFNPLGLAKDIEN 259
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+ K+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 260 AHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPI 293
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ ++A L QN ++ +K A Q + R A ES+WYG +RP++LGP
Sbjct: 9 ISSLAGQTLLRPQQNELV-SKMGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQT 66
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG-VK 125
Query: 193 LVEPVWWRVG--YSKLQGET 210
E VW++ G YS+ + T
Sbjct: 126 FGEAVWFKAGRRYSRREAST 145
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 93/201 (46%), Gaps = 62/201 (30%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 17 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 76
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ I C
Sbjct: 77 LGALGCVFPELLSRNGV-KFGEAVWFKA---------------------------AIWAC 108
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
Q +LM E R G PLG +VKEIKN
Sbjct: 109 QVILMGAVEGYRIGG----GPLG------------------------------EVKEIKN 134
Query: 294 GRLAMVAWLGFYIQAAFTGKG 314
GRLAM + GF++QA TGKG
Sbjct: 135 GRLAMFSMFGFFVQAIVTGKG 155
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 121 IFIPEFLTKIGV--LNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIK---- 174
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 230 MLAVMGAWFQHIYTGTGPI 248
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 30/209 (14%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 158
Query: 238 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 287
M E RY G +A E I L + YPGG LF+PL L+KD + K
Sbjct: 159 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEK 218
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 219 LKEIKNGRLAMVAMLGFMVQASVTHAGPI 247
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 124/261 (47%), Gaps = 27/261 (10%)
Query: 62 VLVFSAIPFTAVKAI-----ANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLW 116
LV ++ TAV A+ A+S LG ++ L ++A + A+ A + +W
Sbjct: 2 ALVSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIW 61
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
+ P P +L G LPGD+GFD GL DP + + E++H RWAMLGA
Sbjct: 62 FPGSTP----------PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGA 111
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G +PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 112 AGIFIPEFLTKIGI--LNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK-- 167
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGR 295
P C + + P D+ YPGG FDPL + P +EL+ KEIKNGR
Sbjct: 168 ----PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGR 220
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM+A +G + QA +TG G I
Sbjct: 221 LAMLAVMGAWFQAEYTGTGPI 241
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 52 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 108
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE+L +G L P W+ G +T + + + ++G I +
Sbjct: 109 IFIPELLTKIGI--LNTPSWYTAGEQTYFADTTTLFIVELILIGWAEGRRWADIIK---- 162
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 163 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLA 217
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 218 MLAVMGAWFQAEYTGTGPI 236
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADI------ 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 171 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 227
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 228 MLAVMGAWFQHIYTGTGPI 246
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 107/212 (50%), Gaps = 40/212 (18%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L + + + G +L PVW+ G +K D+ L Q LLM
Sbjct: 111 LATDFIRVSGINNL--PVWFEAGATKF-----DFANTTALFF-----------VQLLLMG 152
Query: 240 GPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAFE 284
E RY G +A E G FL PG YPGG LF+PL L+KD +
Sbjct: 153 FAETKRYMDFINPGSQAEE--GTFLGIEAALAGSQPG---YPGGPLFNPLGLAKDIENAD 207
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E K+KEIKNGRLAMVA LGF +QA+ T G I
Sbjct: 208 EAKLKEIKNGRLAMVAMLGFIVQASVTHVGPI 239
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 102/199 (51%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 49 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 105
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE+L +G L P W+ G + +T + + + ++G I +
Sbjct: 106 IFIPELLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELILIGWAEGRRWADIIK---- 159
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL + P +EL+ KEIKNGRLA
Sbjct: 160 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLA 214
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 215 MLAVMGAWFQAEYTGTGPI 233
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADI------ 170
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 171 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 227
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 228 MLAVMGAWFQHIYTGTGPI 246
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 111/241 (46%), Gaps = 43/241 (17%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDY 144
+ L T KAA + S + A ERP W G P P +L G LPGD+
Sbjct: 24 RTSFLGTGKAATRSSFTVRTAA-----------PERPIWFPGSTP---PPWLDGSLPGDF 69
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
GFD GL DP + + E++H RWAMLGA G +PE+L +G L P W+ G
Sbjct: 70 GFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAGEQ 127
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--------EALEPLG 256
+ +T + + + +L+ E R+ I + + P
Sbjct: 128 EYFTDT-----------------TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNN 170
Query: 257 IFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGM 315
D+ YPGG FDPL P +EL+ KEIKNGRLAM+A +G + QA +TG G
Sbjct: 171 KLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGP 230
Query: 316 I 316
I
Sbjct: 231 I 231
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 33/239 (13%)
Query: 89 MLETKKAALQDSSKFKALARQAR-NESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGF 146
L KK L++ + A++R A ++ ERP W G P P +L G LPGD+GF
Sbjct: 18 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTP---PEWLDGSLPGDFGF 74
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D GLS DP + + E++H RWAMLGA G +PE L +G L P W+ G +
Sbjct: 75 DPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEY 132
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIF 258
+ + + + +L+ E R+ I + + P
Sbjct: 133 FTDK-----------------TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKL 175
Query: 259 LPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +TG G I
Sbjct: 176 TGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 234
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 122/263 (46%), Gaps = 19/263 (7%)
Query: 59 LAGVLVFSAIPFTAVKAIANSPLGELL---QNRMLETKKAALQDSSKFKALARQARNESL 115
+A V SA+ A + ++ G ++ + L K+ +L+ + A R +
Sbjct: 1 MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAA 60
Query: 116 WYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
RP W G P P +L G LPGD+GFD GL DP + EI+H RWAML
Sbjct: 61 AADPNRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAML 117
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GA G +PE L +G L P W+ G + + + + + ++G I +
Sbjct: 118 GAAGIFIPEFLTKIGI--LNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIK 175
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKN 293
P C + + P D+ YPGG FDPL S P +EL+ KEIKN
Sbjct: 176 ------PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKN 226
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM+A +G + QA +TG G I
Sbjct: 227 GRLAMLAVMGAWFQAIYTGTGPI 249
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL 151
+K + S+ + R +RP W G P P +L G LPGD+GFD GL
Sbjct: 36 RKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGL 92
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 211
DP + + E++H+RWAMLGA G +PE L +G L P W+ G + +T
Sbjct: 93 GSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI--LNTPSWYTAGEQEYFTDTT 150
Query: 212 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271
+ + + ++G I + P C + + P D+ YPGG F
Sbjct: 151 TLFIVELVFIGWAEGRRWADI------LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWF 201
Query: 272 DPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DPL S P +EL+ KEIKNGRLAM+A +G + Q +TG G I
Sbjct: 202 DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL 151
+K + S+ + R +RP W G P P +L G LPGD+GFD GL
Sbjct: 36 RKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGL 92
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 211
DP + + E++H+RWAMLGA G +PE L +G L P W+ G + +T
Sbjct: 93 GSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI--LNTPSWYTAGEQEYFTDTT 150
Query: 212 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271
+ + + ++G I + P C + + P D+ YPGG F
Sbjct: 151 TLFIVELVFIGWAEGRRWADI------LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWF 201
Query: 272 DPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DPL S P +EL+ KEIKNGRLAM+A +G + Q +TG G I
Sbjct: 202 DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 82/145 (56%), Gaps = 13/145 (8%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
VK +SP EL N + +K+A + S + S WYG +R ++LGP +
Sbjct: 18 VKLTPSSP--ELFGNSRVTMRKSATKSVS----------SGSPWYGPDRVKYLGPFSGEP 65
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 124
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E VW++ G LDYLG P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 110 ARNESLWYGEERPRWLGPIPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
A+N WYG R +L P D P+YLTG+L GDYG+D GL KDP QKY
Sbjct: 58 AQNLDKWYGPSRVLFL---PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRA 114
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
FE++HARWAML A G ++PE L GA + W+ G L G TL+Y +P ++
Sbjct: 115 FELIHARWAMLAAAGMIIPEGLAANGA-DIKGATWFETGAEMLNGGTLNYFAVPWAIVSN 173
Query: 224 SQGVIVIAICQALLMVGPECARYCGI--EALEP------LGIFLPGDINYPGGALFDPLN 275
+ I + LM E R G + P +F D +PGG FDPL
Sbjct: 174 PLPLFAIVAVEVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGP-FDPLG 232
Query: 276 LSKDPVAFEELKV 288
L+ DP F+ELKV
Sbjct: 233 LADDPEVFQELKV 245
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ +P EL N + +K A SS S WYG +R ++LGP
Sbjct: 11 PSLAGKAVKVAPSSSELFGNGRISMRKTAKPVSSG-----------SPWYGPDRVKYLGP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
G E VW++ G LDYLG P L
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 101/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 64 DRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + I + +L+
Sbjct: 121 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT-----------------TTLFIIELILI 161
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 162 GWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 221
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A +G + QA +TG G I
Sbjct: 222 EIKNGRLAMLAVMGAWFQAEYTGTGPI 248
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 114/236 (48%), Gaps = 42/236 (17%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDVAG 150
KAA Q + A+A+ WYG R +L D PSYL G L GDYGFD G
Sbjct: 78 KAARQPVDQKAAIAK-------WYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLG 130
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
L D + Y EILHARWAML G ++PE L++ G VW G L GET
Sbjct: 131 LGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNIPGG------VWTETGKVFLDGET 183
Query: 211 LDYLGIPGLHLAGSQGVI----VIAICQALLMVGPECARYCGI--EALEPL-GIFLPGDI 263
G ++ + A Q +LM G E R G+ P G F
Sbjct: 184 ------------GRDSILEFWPIYAAIQVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAF 231
Query: 264 N-----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
N PGG L D +++K+P + LKVKEIKNGRLAM+A LG ++Q A TG+G
Sbjct: 232 NGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEG 286
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
RP W G P P +L G LPGD+GFD GL DP + EI+H RWAMLGA G
Sbjct: 66 NRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG 122
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + + + ++G I
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADI------ 174
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 IKPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLA 231
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 232 MLAVMGAWFQAIYTGTGPI 250
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 112/244 (45%), Gaps = 22/244 (9%)
Query: 74 KAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
K +N G+ L+ R L A+ A + LW+ P P
Sbjct: 27 KLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTP----------P 76
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
+L G LPGD+GFD GL+ DP + + E++H RWAMLGA G +PE L +G L
Sbjct: 77 PWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGI--L 134
Query: 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE 253
P W+ G + +T + + + ++G I + P C + +
Sbjct: 135 NTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK------PGCVN---TDPIF 185
Query: 254 PLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
P D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +TG
Sbjct: 186 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTG 245
Query: 313 KGMI 316
G I
Sbjct: 246 TGPI 249
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAG 106
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + + + +L+
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 147
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 148 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 207
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A +G + Q +TG G I
Sbjct: 208 EIKNGRLAMLAVMGAWFQHIYTGTGPI 234
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 54 NRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 110
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + I + +L+
Sbjct: 111 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT-----------------TTLFIIELILI 151
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 152 GWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 211
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A +G + QA +TG G I
Sbjct: 212 EIKNGRLAMLAVMGAWFQAEYTGTGPI 238
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK---- 174
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 230 MLAVMGAWFQHIYTGTGPI 248
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 66 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 122
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 176
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 177 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 231
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 232 MLAVMGAWFQHIYTGTGPI 250
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYDAGKLEYFTDTTTLFIIELIFIGWAEGRRWADILK---- 174
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 230 MLAVMGAWFQHIYTGTGPI 248
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 111/244 (45%), Gaps = 27/244 (11%)
Query: 79 SPLGE---LLQNRMLE--TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
SPLG L R L+ T A + S A + LW+ P P
Sbjct: 25 SPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTP----------P 74
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
+L G LPGD+GFD GLS DP + + E++H RWAMLGA G +PE L +G L
Sbjct: 75 PWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI--L 132
Query: 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE 253
P W+ G + +T + + + ++G I + + +
Sbjct: 133 NTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILK---------PGSVNTDPIF 183
Query: 254 PLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
P D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +TG
Sbjct: 184 PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 243
Query: 313 KGMI 316
G I
Sbjct: 244 TGPI 247
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + R+ S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTGGKPVRSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRE 93
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 148
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P +++ E++H RWAML G L+PE L G +
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEAL---GLGN 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + G YLG P G + + I + + +R G+ +
Sbjct: 115 WVEAQQW----AATPGGQATYLGTPV-----PWGTLPVIIAIEFVAIAFVESRRIGVPSA 165
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ-AAFT 311
E YPGGA FDPL SKDP FEE K+KE+KNGRLA++A+LGF Q AA+
Sbjct: 166 E--------KRKYPGGA-FDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYP 216
Query: 312 GKG 314
G G
Sbjct: 217 GTG 219
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK---- 174
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 230 MLAVMGAWFQHIYTGTGPI 248
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK---- 185
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 186 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 240
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 241 MLAVMGAWFQHIYTGTGPI 259
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ +P EL N + +K + A + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKVAPSSSELFGNGRISMRKTGKKP---------VASSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
G E VW++ G LDYLG P L
Sbjct: 122 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK---- 185
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 186 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 240
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 241 MLAVMGAWFQHIYTGTGPI 259
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 229 MLAVMGAWFQHIYTGTGPI 247
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 115/257 (44%), Gaps = 42/257 (16%)
Query: 71 TAVKAIAN-SPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWY-GEERPRWLGPI 128
+A KA+++ S + + L + K + + F A QA LW+ G P WL
Sbjct: 19 SATKAVSSGSAVKAAFFGKTLRSAKVSAVSKASFSVRA-QATERPLWFPGSTAPEWL--- 74
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
G LPGD+GFD GL +P + + EI+H RWAMLGA G +PE+L +
Sbjct: 75 --------DGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKI 126
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
G + P W+ G + + I + L M E R+
Sbjct: 127 GILN--TPSWYTAGEQTYFADQ-----------------TTLFIVELLFMGWAEGRRWAD 167
Query: 249 I--------EALEPLGIFLPGDINYPGGALFDPLNLSKDPVA-FEELKVKEIKNGRLAMV 299
I + + P D+ YPGG FDPL A +EL+ KEIKNGRLAM+
Sbjct: 168 ILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAML 227
Query: 300 AWLGFYIQAAFTGKGMI 316
A +G + QA +TG G I
Sbjct: 228 AVMGAWFQAVYTGTGPI 244
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 229 MLAVMGAWFQHIYTGTGPI 247
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G LPGD+GFD GLS DP + + E++H+RWAMLGA G +PE L +G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-- 58
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
L P W+ G + +T + + + ++G I P C + +
Sbjct: 59 LNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILN------PGCVN---TDPI 109
Query: 253 EPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
P D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +T
Sbjct: 110 FPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYT 169
Query: 312 GKGMI 316
G G I
Sbjct: 170 GTGPI 174
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 33/223 (14%)
Query: 105 ALARQ-ARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
A++RQ A ++ +RP W G P P +L G LPGD+GFD GLS DP + +
Sbjct: 35 AVSRQDASVRAVAADPDRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNV 91
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
EI+H RWAMLGA G +PE L +G L P W+ G + +
Sbjct: 92 QAEIVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK------------ 137
Query: 223 GSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPL 274
+ + + +L+ E R+ I + + P D+ YPGG FDPL
Sbjct: 138 -----TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPL 192
Query: 275 NL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
S P +EL+ KEIKNGRLAM+A +G + Q +TG G I
Sbjct: 193 GWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 101/184 (54%), Gaps = 21/184 (11%)
Query: 116 WYGEERPRWLGPIPYDY---PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 185
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 186 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 236
Query: 291 IKNG 294
IKNG
Sbjct: 237 IKNG 240
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + Q +TG G I
Sbjct: 229 MLAVMGAWFQHIYTGTGPI 247
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + + + +L+
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 148
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 149 GWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTK 208
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A +G + Q +TG G I
Sbjct: 209 EIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE+L +G + P W+ G + + + + L ++G I +
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAGEQEYFTDKTTLFVVEMIFLGWAEGRRWADIIKP--- 183
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
+ + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 184 ------GSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 237
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 238 MLAVMGAWFQAEYTGTGPI 256
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 99/207 (47%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 106
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + + + +L+
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 147
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 148 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 207
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRL M+A +G + Q +TG G I
Sbjct: 208 EIKNGRLTMLAVMGAWFQHIYTGTGPI 234
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 124/265 (46%), Gaps = 46/265 (17%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ F+A A+ P ++ L+ S+ L A++E R WL
Sbjct: 2 AVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSE------HRQTWLP 55
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
+ D P +L G L GD+GFD GL +DP + + Y E++H R+AMLG G L+ ++L
Sbjct: 56 GL--DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLR 113
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
+ G L PVW+ G ++Y G + I Q LLM E RY
Sbjct: 114 VTGISEL--PVWYNAG-------AVEY---------GFANKRTLFIVQLLLMGFVETKRY 155
Query: 247 C-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
G +A E G F PG YPGG L +PL ++KD + K+KEI
Sbjct: 156 MDFKSPGSQAQE--GTFFGLEAAFKGLEPG---YPGGPLLNPLGIAKDIKNAHDWKLKEI 210
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
KNGRLAMVA LG ++QA T G I
Sbjct: 211 KNGRLAMVAMLGIFVQAYVTHTGPI 235
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 103/207 (49%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE+L+ +G YS + T +Y P + I Q LM
Sbjct: 110 ILIPELLEKMGYVE---------NYSWYEAGTQEYFADP----------TTLFIVQLALM 150
Query: 239 VGPECARYC-----GIEALEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ G +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 151 GWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 210
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 211 EIKNGRLAMLAFVGFWFQAIYTGQGPI 237
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 103/200 (51%), Gaps = 16/200 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP WL G P P++L G L GD+GFD GL +DP + Y E++H+R+AM G G
Sbjct: 1 ERPLWLPGTTP---PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAG 57
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L ++L G + PVW+ G +K L + L L G + ++
Sbjct: 58 ILFTDLLRASGRTDI--PVWFEAGATKFDFADTTTLFVVQLIL---MGFVETKRWMDIVK 112
Query: 239 VGPECAR--YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
G + A + G EA F + YPGG LF+PL + DP + L+ KEIKNGRL
Sbjct: 113 PGSQAAEDSFFGFEA-----AFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRL 167
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AMVA +GF +QA T G I
Sbjct: 168 AMVAMVGFMVQAYVTKTGPI 187
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 118/263 (44%), Gaps = 22/263 (8%)
Query: 62 VLVFSAIPFTAVKAIANSPLGELLQNRMLETK------KAALQDSSKFKALARQARNESL 115
V S++ V A ++S +L N + K +A +K R A S
Sbjct: 8 VCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVTVSQ 67
Query: 116 WYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
ERP W G P P +L G LPGD+GFD GL DP + E++H RWAML
Sbjct: 68 AVQTERPLWFPGNTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAML 124
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GA G +PE+ +G + P W+ G + + + + L ++G I +
Sbjct: 125 GAAGIFIPELCTKLGILN--TPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILE 182
Query: 235 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKN 293
+ + P D+ YPGG FDPL S P +EL+ KEIKN
Sbjct: 183 ---------PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKN 233
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM+A +G + QA +TG G I
Sbjct: 234 GRLAMLAVMGAWFQAEYTGTGPI 256
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 104/212 (49%), Gaps = 38/212 (17%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML A
Sbjct: 56 GPDRPLWFPGSSP---PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAA 112
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G LVPEVL+ G YS + DY P + + Q
Sbjct: 113 AGILVPEVLEKWGFME---------DYSWIDAGARDYFADP----------WTLFVSQMA 153
Query: 237 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 284
LM E R+ G A+EP LP D+ YPGG FD N + P
Sbjct: 154 LMGWAEGRRWADYLNPGCVAVEPR---LPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVM 210
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ KEIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 211 VLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPI 242
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 139
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 140 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 192
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 193 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 238
Query: 312 GKG 314
G G
Sbjct: 239 GTG 241
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 81/142 (57%), Gaps = 8/142 (5%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 58
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 59 FQVILMGLVEGFRINGLDGVGE------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 112
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 113 NGRLAMFSMFGFFVQAIVTGKG 134
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 132/297 (44%), Gaps = 39/297 (13%)
Query: 37 PSRKNLLLKPKSSLVCK-ASWQELAGVLVFSAIPFTAVKAIANSP-----LGELLQNRML 90
P++K + K S V K A V P VK A +P + +++
Sbjct: 23 PAKKPVPAKKPSPFVKKTAPAPAKKTAPVKKTAPVKTVKKAAPAPKKTVPMKTVVRKAAP 82
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGF 146
K A ++ + K + + ++S WYG R P L I D PSY+ G L GDYGF
Sbjct: 83 VRKAAPVRKAGKASGVNQAGSDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGF 142
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D L KD Q Y E+ HARWAML G ++PE L + G W G L
Sbjct: 143 DPLQLGKDGKIAQ-YRIAEVQHARWAMLAVPGVVIPEALGVPGGN------WTETGKVFL 195
Query: 207 QGET--LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA---LEPL-GIFLP 260
GE + LG P L A + L+ G E R +EA P+ G F
Sbjct: 196 DGEAGRPEILGNPYLFTA----------IEVALLAGVEGYRSGKLEAPAGFAPIYGKFEG 245
Query: 261 GDIN-----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
D PGG L D LN++ P LKVKEIKNGRLAM+A LG ++Q A TG
Sbjct: 246 KDFKGLDPINPGGPL-DFLNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGATTG 301
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 115/261 (44%), Gaps = 43/261 (16%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKK---AALQDSSKFKALARQARNESLWY-GEERPRW 124
P + V + S L R L T + AA D + L + LW G E P+W
Sbjct: 18 PTSKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPKW 77
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
L G LPGDYGFD L+ +P E++H RWAMLGA G +PE+
Sbjct: 78 L-----------DGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPEL 126
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECA 244
L +G + P W++ G + + QG + I + LLM E
Sbjct: 127 LTKIGILN--TPSWYKAGDATYFAD---------------QGTLF--IVELLLMAWAESR 167
Query: 245 RYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGR 295
R+ I + + P D+ YPGG FDPL S +E++ KE+KNGR
Sbjct: 168 RWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGR 227
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
LAM+A LG ++QA T G I
Sbjct: 228 LAMLAVLGAFVQANVTHVGPI 248
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE+L +G + P W+ G + + + + L ++G I +
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADIIK---- 182
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
+ + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 183 -----PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 237
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A +G + QA +TG G I
Sbjct: 238 MLAVMGAWFQAEYTGTGPI 256
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAG 107
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + + + +L+
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 148
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 149 GWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTK 208
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A +G + Q +TG G I
Sbjct: 209 EIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 118/240 (49%), Gaps = 30/240 (12%)
Query: 82 GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS-YLTGEL 140
G++ +R L+ + + S + ++ +A G ERP W P P+ +L G L
Sbjct: 7 GDIGAHRRLKARATTTRASRRSVVVSAEA-------GAERPVWY---PGKAPAPHLDGSL 56
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGD+GFD LS DP + E+ HARWAMLG GA+ PE+L +G L P W
Sbjct: 57 PGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADL--PNWVD 114
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLP 260
G T Y AG I +A+ + + + G +PL +
Sbjct: 115 AG-------TYQYWAP-----AGPLFFIQMAMFNWAEVRRWQDMKNPGSMNTDPLFGYNS 162
Query: 261 GDIN----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
D N YPGG LFD L +KDP +ELK+KEIKNGRLAMVA+LG Q TG+G +
Sbjct: 163 NDTNTDVGYPGG-LFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQGPV 221
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 1 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 57
Query: 233 CQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 58 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 107
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
E+KNGRLAM + GF++QA TGKG I
Sbjct: 108 ELKNGRLAMFSMFGFFVQAIVTGKGPI 134
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 34/232 (14%)
Query: 94 KAALQDSSKFKALARQARNES------LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++A S LAR+ R S + E + WL + PSYL G LPGD GFD
Sbjct: 19 RSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGL--SSPSYLNGSLPGDNGFD 76
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
GL++DP + + Y E+++ RWAMLG G L+PEVL +G ++ P W+ G +
Sbjct: 77 PLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINV--PKWYDAGKVE-- 132
Query: 208 GETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIEALEPL---GIFLPGD 262
+ A S + VI + + + + +Y G +PL P +
Sbjct: 133 ------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNE 180
Query: 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q TGKG
Sbjct: 181 VGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNVTGKG 227
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 25/115 (21%)
Query: 226 GVIVIAICQALLMVG---------------PECARYCGIEALEPLGIFLPG-------DI 263
GV ++C++ + G P AR +EA G +LPG +
Sbjct: 11 GVSCPSVCRSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAK---GEWLPGLSSPSYLNG 67
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
+ PG FDPL L++DP + + E+ NGR AM+ G I T G+I V
Sbjct: 68 SLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINV 122
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 89/156 (57%), Gaps = 18/156 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
+++ I + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVIAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
DP LKVKEIKNGRLAM A LGF+IQA TG+G
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEG 140
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 104/219 (47%), Gaps = 45/219 (20%)
Query: 116 WYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D PSYL G L GDYGFD GL D A ++Y E++HARWA
Sbjct: 102 WYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWA 160
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML G ++PE L + G VW G L GET G P + IV A
Sbjct: 161 MLAIPGVVIPEALGLPGG------VWTETGKVFLDGET----GRPFFL----ENPIVFAA 206
Query: 233 CQALLMVGPECARYCG-----------------IEALEPLGIFLPGDINYPGGALFDPLN 275
Q LM G E R G + L+P+ PGG L D N
Sbjct: 207 VQVALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPIN---------PGGPL-DFFN 256
Query: 276 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
++ +P LKVKEIKNGRLAM+A LG ++Q TG+G
Sbjct: 257 VASNPQDLALLKVKEIKNGRLAMIAMLGVFVQGLTTGEG 295
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 22/185 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 117 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 169
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 170 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 312 GKGMI 316
G G +
Sbjct: 216 GTGPL 220
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 119/264 (45%), Gaps = 34/264 (12%)
Query: 66 SAIPFTAVKAIA---------NSPLGELLQNRMLETKK--AALQDSSKFKALARQARNES 114
SA +A+ A+A N G L R L KK AA+ S + A
Sbjct: 3 SACASSAITAVAISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGGRSMGTTVCAVAE--- 59
Query: 115 LWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAM
Sbjct: 60 ----PDRPLWFPGSTP---PPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAM 112
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGA G +PE L +G L P W+ G + +T + + ++G I
Sbjct: 113 LGAAGIFIPEFLTKIGV--LNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADII 170
Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIK 292
+ P C + + P D+ YPGG FDPL + P ++L+ KEIK
Sbjct: 171 K------PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIK 221
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM+A +G + Q +T G I
Sbjct: 222 NGRLAMLAVMGAWFQHIYTATGPI 245
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 101/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G ++ T +Y P + + Q +LM
Sbjct: 112 ILIPEWLERLGFID---------NFNWFDAGTREYFADP----------TTLFVVQLILM 152
Query: 239 VGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I+ P DI YPGG FDP N + P ++ K
Sbjct: 153 GWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPI 239
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 119/249 (47%), Gaps = 44/249 (17%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQ----ARNESLWYGEERPRWL-GPIPYDYPSYLTGE 139
L+ L ++ AA+ + +A A + A E L G +RP W G P P +L G
Sbjct: 21 LRAPTLPSQNAAVARMAGHRAGATKGGVSAVCEPL--GPDRPLWFPGSSP---PPWLDGS 75
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD+GFD GL DP + + E++H+RWAML G LVPEVL+ G
Sbjct: 76 LPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFME------- 128
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEALEP 254
YS + DY P + + Q LM E R+ G A+EP
Sbjct: 129 --DYSWIDAGARDYFADP----------WTLFVSQMALMGWAEGRRWADYLNPGCVAVEP 176
Query: 255 LGIFLPG------DINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
LP D+ YPGG FD N + P L+ KEIKNGRLAM+A++GF+ Q
Sbjct: 177 R---LPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQ 233
Query: 308 AAFTGKGMI 316
A +TG+G I
Sbjct: 234 AVYTGEGPI 242
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 115 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 167
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 168 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFK 59
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-IFL 259
G LDYLG P L A Q ++ I CQ +LM E R G PLG + +
Sbjct: 60 AGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVTV 113
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELK 287
P YPGG+ FDPL L+ DP AF ELK
Sbjct: 114 P---IYPGGS-FDPLGLADDPEAFAELK 137
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 118/237 (49%), Gaps = 32/237 (13%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDV 148
T K ++ ++ K + A + S WYG +R +L D PSYL G+L GDYGFD
Sbjct: 44 TVKKTVKKAAPVKTTVKTA-DLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDP 102
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
GL D A ++Y E++HARWAML G ++PE L++ G W G L+G
Sbjct: 103 LGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGD------WRETGKVFLEG 155
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI----------- 257
T + G L L IA+ ++++G ++ A P G
Sbjct: 156 STGRF-GPAELWLG-------IAVAPLIVLMG-GAEKFRSDPASAPSGFVPFKGSFTGKD 206
Query: 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
F D PGG L D N++ P E LKVKEIKNGRLAM+A LG ++Q A TG+G
Sbjct: 207 FAKLDPINPGGPL-DFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEG 262
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 105/209 (50%), Gaps = 32/209 (15%)
Query: 119 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+ERP WL G P P +L G L GD+GFD L KDP + Y E++H+R+AM G
Sbjct: 41 DERPIWLPGLSP---PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIA 97
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G LV ++L VG L PVW+ G ++ + A ++ + V+ Q +L
Sbjct: 98 GILVTDLLRTVGGRDL--PVWYEAGATEFE-------------FADTRTLFVV---QLIL 139
Query: 238 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 287
M E RY G +A + + + YPGG FDP L +D LK
Sbjct: 140 MGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNARTLK 199
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KE+KNGRLAMVA LG ++QA FT G I
Sbjct: 200 EKELKNGRLAMVAILGVFVQAFFTKTGPI 228
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+RP W P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 1 DRPLWF--PGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGI 58
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+PE L G + P W G + + I + A ++G I V
Sbjct: 59 FIPEALTKAGILN--TPSWNVAGDQQYFADPTTLFVIELILFAWAEGRRWADI------V 110
Query: 240 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL--SKDPVAFEELKVKEIKNGRLA 297
P C ++ + P D+ YPGG FDPL +KD +EL+ KEIKNGRLA
Sbjct: 111 NPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLA 167
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A LG +QA +T G I
Sbjct: 168 MLAVLGAVVQANYTHTGPI 186
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ + L D A S WYG R +LGP+ P +L GELPGDYGFD
Sbjct: 76 NIITFHQRVLSDLGGVAMFAATGEKLSDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFD 135
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
V GL+ P ++Y EI++ RWAMLG +G +VPE+L EPVW++ G +
Sbjct: 136 VLGLATQPTRLERYRQGEIINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFS 195
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 248
E L+YLG P L A S + I + + L + E R G
Sbjct: 196 EEGLNYLGNPSLIHAKS--IAAILVTEILFVGAAEAFRVSG 234
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
D+ YPG A FDPL LSKD AF ELKVKE+KNGRLAM+ LG ++Q TGKG
Sbjct: 9 DLVYPGKA-FDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKG 60
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 200
FD GLSKD AF + E+ + R AMLG LG + G A HL +P
Sbjct: 17 FDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQNLADHLADPTGAN 76
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM--VGPECARYCG---IEALEPL 255
+ L LG GV + A L GP + G A E L
Sbjct: 77 I--ITFHQRVLSDLG----------GVAMFAATGEKLSDWYGPNRKLFLGPLSDGAPEHL 124
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
LPGD FD L L+ P E + EI NGR AM+ +G
Sbjct: 125 KGELPGDYG------FDVLGLATQPTRLERYRQGEIINGRWAMLGIVG 166
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G ++ T +Y P + + Q +LM
Sbjct: 112 ILIPEWLERLGFID---------NFNWFDAGTREYFADP----------TTLFVVQLILM 152
Query: 239 VGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I+ P D+ YPGG FDP N + P ++ K
Sbjct: 153 GWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPI 239
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAG 134
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 100/187 (53%), Gaps = 26/187 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL +G +
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 250
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 115 V--PKWYDAGKVE--------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSV 158
Query: 251 ALEPL---GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
+PL P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 159 NQDPLFKQYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 213
Query: 308 AAFTGKG 314
TGKG
Sbjct: 214 HNVTGKG 220
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 25/115 (21%)
Query: 226 GVIVIAICQALLMVG---------------PECARYCGIEALEPLGIFLPG-------DI 263
GV ++C++ + G P AR +EA G +LPG +
Sbjct: 4 GVSCPSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK---GEWLPGLSSPSYLNG 60
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
+ PG FDPL L++DP + + E+ NGR AM+ G I T G+I V
Sbjct: 61 SLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINV 115
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 84/144 (58%), Gaps = 10/144 (6%)
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 46 WAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAI 102
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE
Sbjct: 103 WAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKE 155
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKG 314
IKNGRLAM + GF++QA TGKG
Sbjct: 156 IKNGRLAMFSMFGFFVQAIVTGKG 179
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 97/185 (52%), Gaps = 26/185 (14%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P+YL G LPG +GFD GL P Q++ E++H+RWAM G GAL E+L
Sbjct: 42 DTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLG---- 96
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIP-GLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
+ W++ + G YLGIP +L+ + +AI G E R
Sbjct: 97 ----QGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIA------GAEAQRNAEP 146
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
+A + YPGGA FDPL SKD EE K+KE+KNGRLAM+A++GF Q A
Sbjct: 147 DAEK---------RKYPGGA-FDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHA 196
Query: 310 FTGKG 314
TGKG
Sbjct: 197 ATGKG 201
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + + G YLG+P G I + L + ++ G L
Sbjct: 114 WVEAQKW----AAIPGGQATYLGVPV-----PWGYFPIILSIFFLKMAFAESQRNGEPDL 164
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
E YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF +QA+
Sbjct: 165 E--------KRKYPGGA-FDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQAS 212
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 121/274 (44%), Gaps = 31/274 (11%)
Query: 48 SSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALA 107
+S VC +S V V + + V A LL R+ + A ++ A
Sbjct: 2 ASAVCASS-----NVAVVAGPSTSKVVNSAGPARTSLLAGRVRRVTRIAASPQAEAPVPA 56
Query: 108 RQA---RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+ + + LW+ +P P +L G LPGD+GFD GL DP + +
Sbjct: 57 QPSLPNNDRPLWFPGSQP----------PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQA 106
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGA G +PE L G + P W G + + I + A +
Sbjct: 107 ELVHCRWAMLGAAGIFIPEALTKAGILN--TPSWTVAGDQQYFTDATTLFVIEIILFAWA 164
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK--DPVA 282
+G I + P C ++ + P D+ YPGG FDPL + D
Sbjct: 165 EGRRWADI------INPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAK 215
Query: 283 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
++L+ +EIKNGRLAM+A LG +QA +T G I
Sbjct: 216 LKDLRTREIKNGRLAMLAVLGAVVQANYTHTGPI 249
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 102/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKNYSLPPNEVGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 219 IVQHNVTGKG 228
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 94/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + L I A Q + PE +
Sbjct: 112 AQEWAAEPGGQATYLGNPVPWGTLPTI-LVIEFVAIAFAEHQRTMEKDPEKKK------- 163
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
YPGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 164 ------------YPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 312 GKG 314
G G
Sbjct: 211 GTG 213
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 102/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 120 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF
Sbjct: 161 GSVNQDPIFKNYSLPPNEVGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGF 215
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 216 IVQHNVTGKG 225
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R L L F ++ A+ S ++ WL + P YLTG L GD GFD
Sbjct: 21 RFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLAS--PDYLTGSLAGDNGFD 78
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G +
Sbjct: 79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAGKEQ-- 134
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIF----LP 260
+ A S + VI + +L E R+ I+ ++ IF LP
Sbjct: 135 ------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 179
Query: 261 -GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G++ YPGG +F+PLN + +E K KE+ NGRLAM+A+LGF +Q TGKG
Sbjct: 180 KGEVGYPGG-IFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNVTGKG 229
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 24/218 (11%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S + A ++SL ++ WL +P P+YL G L GD GFD GL++DP A
Sbjct: 30 SRNVQVAAAPISSQSLKVEAKKGEWLPGLPS--PAYLNGSLAGDNGFDPLGLAEDPAALN 87
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
Y E+ + RWAMLG G LVPEVL +G + P+W+ G ++Y
Sbjct: 88 WYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN--APLWYDAG-------KVEYFAP--- 135
Query: 220 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL---GIFLPGDINYPGGALFDPLNL 276
A + VI + + + + +Y G + +P PGD+ YPGG +F+PL
Sbjct: 136 --ASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPPGDVGYPGG-IFNPLKF 192
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ +E K KEI NGRLAM+A+LG +Q+ TG G
Sbjct: 193 PAN----QEYKEKEIANGRLAMLAFLGMLVQSKLTGAG 226
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALWRE 324
FDPL L++DP A E++NGR AM+ G + T G+I A LW +
Sbjct: 74 FDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLI-NAPLWYD 126
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L +
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVK 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P + ++AI + L + E R ++
Sbjct: 116 AQE-------WAAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKDSE 164
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
+ YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 165 K---------KKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 96/183 (52%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P GS I++ A+ E R +
Sbjct: 116 AQE-------WAAVPGGQATYLGNPVPW--GSLPTILVIEFVAIAFA--EHQRTMEKD-- 162
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 103/187 (55%), Gaps = 14/187 (7%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL +LPG YGFD L +DP + + Y E++H+R+AM G L+PEVL GA +
Sbjct: 45 PAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFGAVN 103
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP--ECARYCGIE 250
L PVW+ G + + + + L + + I Q G E + G+E
Sbjct: 104 L--PVWYEAGKYAQESSPIPFNTLIALEIFAFN-FVEIKRWQDFKKPGSQGEEGSFVGLE 160
Query: 251 ALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
G F G+ YPGG +FDPL LSK P +E +K++EIKNGRLAM+A++GF Q
Sbjct: 161 -----GFFKGTGENGYPGG-VFDPLGLSKGP-GYEAMKLREIKNGRLAMLAFIGFASQYL 213
Query: 310 FTGKGMI 316
TGKG I
Sbjct: 214 ATGKGPI 220
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 117 AQEWAALPDGQATYFGVPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 169
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 170 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 312 GKG 314
G G
Sbjct: 216 GTG 218
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 32/203 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + I + +L+
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAGEQEYFTDQ-----------------TTLFIVEMILL 159
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDP + P +EL+ K
Sbjct: 160 GWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTK 219
Query: 290 EIKNGRLAMVAWLGFYIQAAFTG 312
EIKNGRLAM+A +G + QA +TG
Sbjct: 220 EIKNGRLAMLAVMGAWFQAVYTG 242
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 32/203 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE L +G L P W+ G + + + I + +L+
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAGEQEYFTDQ-----------------TTLFIVEMILL 159
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 289
E R+ I + + P D+ YPGG FDP + P +EL+ K
Sbjct: 160 GWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTK 219
Query: 290 EIKNGRLAMVAWLGFYIQAAFTG 312
EIKNGRLAM+A +G + QA +TG
Sbjct: 220 EIKNGRLAMLAVMGAWFQAVYTG 242
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 46/236 (19%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K + FK A++ WL +P P+YL G LPGD GF
Sbjct: 31 NRALSVKPTTSSIPNAFKVEAKKGE------------WLPGLPS--PTYLDGSLPGDNGF 76
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D GL++DP + Y E+++ RWAMLG G ++PEVL G ++ P W+ G ++
Sbjct: 77 DPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINV--PKWYDAGKAE- 133
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL---- 259
+ A S + VI + +L E R+ I+ ++ IF
Sbjct: 134 -------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL 177
Query: 260 -PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P D+ YPGG +F+PLN +P E + KEI NGRLAM+A+LGF +Q TGKG
Sbjct: 178 PPNDVGYPGG-IFNPLNF--EPTL--EAREKEIANGRLAMLAFLGFIVQHNVTGKG 228
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P + I + + + + E R +
Sbjct: 116 AQE-------WAAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 162
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 100/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L G +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + + G YLG P + I + + + + E R +
Sbjct: 113 WVKAQEW----AAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 162
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 94/189 (49%), Gaps = 34/189 (17%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 84
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP------GLHLAGSQGVIVIAICQALLMVGPECARY 246
E ++ + G Y G+P LA I A Q + PE +Y
Sbjct: 85 AQE-------WAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQRTMEKDPEKKKY 137
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
PGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++GF +
Sbjct: 138 -------------------PGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCV 177
Query: 307 -QAAFTGKG 314
Q+A+ G G
Sbjct: 178 QQSAYPGTG 186
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LVPE+L+ +G +S T +Y P + + Q LM
Sbjct: 112 ILVPELLERIGYIE---------NFSWYDAGTREYFVDP----------TTLFVVQMGLM 152
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I E P D+ YPGG FDP+ + P L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPI 239
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L +
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P + ++AI + L + E R +
Sbjct: 116 AQE-------WAAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 162
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 100/206 (48%), Gaps = 30/206 (14%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+RP WL + P +L G LPGDYGFD L+ +P E++H RWAMLGA G
Sbjct: 13 DRPLWL--PGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 70
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+PE+L +G + P W++ G + + QG + I + LLM
Sbjct: 71 FIPELLTKIGILN--TPSWYKAGDATYFAD---------------QGTLF--IVELLLMA 111
Query: 240 GPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKE 290
E R+ I + + P D+ YPGG FDPL S +E++ KE
Sbjct: 112 WAESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKE 171
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
+KNGRLAM+A LG ++QA T G I
Sbjct: 172 VKNGRLAMLAVLGAFVQANVTHVGPI 197
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 100/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L G +
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + + G YLG P + ++AI + L + E R ++
Sbjct: 113 WVKAQEW----AAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKDSE 164
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
+ YPGGA FDPL SKDP FEELKVKEIKNGRLA++A +GF + Q+A+
Sbjct: 165 KK---------KYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 66
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P + I + + + + E R +
Sbjct: 67 AQE-------WAAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 113
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 114 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 165
Query: 312 GKG 314
G G
Sbjct: 166 GTG 168
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 121 V--PKWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 161
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+ IF P + YPGG +F+PLN + A EE K KE+ NGRLAM+A+LGF
Sbjct: 162 GCVNQDPIFKNYSLPPNECGYPGG-IFNPLNFA----ATEEAKEKELANGRLAMLAFLGF 216
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 217 IVQHNVTGKG 226
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + L I A Q + PE +
Sbjct: 112 AQEWAAEPGGQATYLGNPVPWGTLPTI-LVIEFVAIAFAEHQRTMEKDPEKKK------- 163
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
YPGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++ F + Q+A+
Sbjct: 164 ------------YPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYP 210
Query: 312 GKG 314
G G
Sbjct: 211 GTG 213
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV-IAICQALL 237
LVPE+L+ +G +S +Y P G++ + +
Sbjct: 112 ILVPELLEKIGYIE---------NFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWAD 162
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRL 296
MV P IE P D+ YPGG FDP+ + P L+ KEIKNGRL
Sbjct: 163 MVNPGS---VDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRL 219
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM+A++GF+ QA +TG+G I
Sbjct: 220 AMLAFVGFWFQAIYTGEGPI 239
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G Y G+P + ++AI + L + E R +
Sbjct: 117 AQE-------WAAVPGGQATYFGVP---VPWGNLPTILAI-EFLAIAFAEHQRTMEKD-- 163
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDPV EE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 312 GKG 314
G G
Sbjct: 216 GTG 218
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 100/205 (48%), Gaps = 30/205 (14%)
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
RP WL P P++L G LP DYGFD L DP + + E++H RWAMLG G +
Sbjct: 42 RPTWLPGSPA--PAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMV 99
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 240
PE+L +G L P W G K G L G + Q +M
Sbjct: 100 GPELLTKIGMADL--PNWIDAG--KWDGYWL--------------GAGPLFFVQMAMMNW 141
Query: 241 PECARYCGIEA-----LEPLGIFLPGDIN----YPGGALFDPLNLSKDPVAFEELKVKEI 291
E R+ ++A +PL GD N YP G LFDP+ +KDP EELK KEI
Sbjct: 142 AEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKG-LFDPMGYAKDPKKAEELKRKEI 200
Query: 292 KNGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAMVA +G + QA TG G +
Sbjct: 201 ANGRLAMVAIVGCFAQAISTGTGPV 225
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + + G Y G+P G + I + L + ++ G
Sbjct: 113 WVEAQKW----AAIPGSQATYFGVPV-----PWGYLPIVLAVEFLAIAFVESQRNG---- 159
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
EP P YPGGA FDPL SKDPV F+E KVKEIKNGRLA++A++GF +QA+
Sbjct: 160 EPD----PEKRKYPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQAS 211
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 38 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 97
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
RWAMLGALG + PE+L G E VW++ G LQG
Sbjct: 98 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQVLQGR 136
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 45/228 (19%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q + LW+ ++ SYL G LPGDYGFD GLS DP +
Sbjct: 48 AKQGADRQLWFASKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSW 96
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGI 216
EI++ R+AMLGA+GA+ PE+L G L+ P W++ G G T DY
Sbjct: 97 LAYGEIINGRYAMLGAVGAIAPEILGKAG---LIPPETALPWFKTGVIPPAG-TYDYWAD 152
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--IFL--------PGDINYP 266
P + + + LM E R+ + L FL G+ YP
Sbjct: 153 P----------YTLFVFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYP 202
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
GG LF+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG G
Sbjct: 203 GGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 250
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 36/237 (15%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
++R L + L FK ++ S ++ WL +P P+YL G LPGD G
Sbjct: 19 KSRFLSGSPSKLNREVAFKPMSSSP--ASFKVEAKKGEWLPGLPS--PAYLNGSLPGDNG 74
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
FD GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G +
Sbjct: 75 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PKWYDAGKEE 132
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 259
+ A S + VI + +L E R+ I+ ++ IF
Sbjct: 133 --------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 175
Query: 260 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P ++ YPGG +F+PLN + E K KE+ NGRLAM+A+LGF IQ TGKG
Sbjct: 176 LPPNEVGYPGG-IFNPLNFAPT----LEAKEKELANGRLAMLAFLGFVIQHNVTGKG 227
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
PG FDPL L++DP + E+ NGR AM+ G + FT G+I V
Sbjct: 70 PGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV 122
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 114/236 (48%), Gaps = 39/236 (16%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 212
+ EI++ R+AMLGA+GA+ PE+L G + W+R G+ G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAG-TYN 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 258
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG G
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 94/184 (51%), Gaps = 26/184 (14%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG GAL E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNW 103
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI + + A V A +
Sbjct: 104 YD--APLW------AVTGGKATWFGI--------EVPFDLNTLLAFEFVAMAAAEGQRND 147
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
A G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 148 A---------GGVIYPGGA-FDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAA 197
Query: 311 TGKG 314
TGKG
Sbjct: 198 TGKG 201
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R L L FK++ ++ S ++ WL + P YL G L GD GFD
Sbjct: 21 RFLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGLAS--PGYLNGSLAGDNGFD 78
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G +
Sbjct: 79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAGKEQ-- 134
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL----- 259
+ A S + VI + +L E R+ I+ ++ IF
Sbjct: 135 ------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 179
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P ++ YPGG +F+PLN + P E K KE+ NGRLAM+A+LGF IQ TGKG
Sbjct: 180 PNEVGYPGG-IFNPLNFA--PTV--EAKEKELANGRLAMLAFLGFVIQHNVTGKG 229
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 124/252 (49%), Gaps = 42/252 (16%)
Query: 83 ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
++L +R L++ + SS F + R A + G +RP W +YL G LPG
Sbjct: 20 QILGSRPLQSPS---RKSSSF--VVRAASTPPVKQGADRPLWFAS--KQSLTYLDGSLPG 72
Query: 143 DYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
DYGFD GLS DP + E+++ R+AMLGA+GA+ PE+L +G L+ P
Sbjct: 73 DYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLG---LIPP 128
Query: 197 ----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY------ 246
W++ G G T +Y P + + + LM E R+
Sbjct: 129 ETALPWFKTGVFPPAG-TYNYWADP----------YTLFVFEMALMGFAEHRRFQDWANP 177
Query: 247 --CGIEALEPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 302
G + L +L GD YPGG LF+PL KD + ++LK+KE+KNGRLAM+A L
Sbjct: 178 GSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 237
Query: 303 GFYIQAAFTGKG 314
G++ Q TG G
Sbjct: 238 GYFAQGPVTGVG 249
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 98/183 (53%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 63
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P G+ I+ A+ V E R +
Sbjct: 64 WVKAQEW----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV--EHQRSMEKD-- 113
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 114 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 165
Query: 312 GKG 314
G G
Sbjct: 166 GTG 168
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---GLGN 73
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + + G Y G+P G + I + L + ++ G
Sbjct: 74 WVEAQKW----AAIPGSQATYFGVPV-----PWGYLPIVLAVEFLAIAFVESQRNG---- 120
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
EP P YPGGA FDPL SKDPV F+E KVKEIKNGRLA++A++GF +QA+
Sbjct: 121 EPD----PEKRKYPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQAS 172
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 98/207 (47%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 91 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 147
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G Y+ +Y P + I Q +LM
Sbjct: 148 ILIPEWLESLGFIE---------NYNWFDAGAREYFADP----------TTLFIVQLVLM 188
Query: 239 VGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ IE P D+ YPGG FDPL + P L+ K
Sbjct: 189 GWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTK 248
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF QA +TG+G I
Sbjct: 249 EIKNGRLAMLAFVGFCFQAVYTGEGPI 275
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKEE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 251 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
IQ TGKG
Sbjct: 219 IIQHNVTGKG 228
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
PG FDPL L++DP + E+ NGR AM+ G + FT G+I V
Sbjct: 71 PGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINV 123
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 102/207 (49%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE+L+ +G ++ W+ G +++Y P + I Q LM
Sbjct: 118 ILIPEILEKIG--YVKNFSWYNAG-------SVEYFADP----------TTLFIVQLALM 158
Query: 239 VGPECARYCGIEA-----LEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A+LGF QA + G I
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPI 245
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 43 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 173 MLGALGALVPEVLDMVG 189
MLGALG PE+L+ G
Sbjct: 103 MLGALGCTFPELLEKNG 119
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 101/213 (47%), Gaps = 23/213 (10%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL------SKDPMAFQKYFNFEILHARWA 172
ERP W P +L G LPGD+GFD GL DP + + E++H RWA
Sbjct: 62 NERPLWFPG--SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWA 119
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G +PE L +G + P W G + + I + A ++G I
Sbjct: 120 MLGAAGIFIPEALTKMGILN--TPSWTVAGDADYFTDKTTLFVIELILFAWAEGRRWADI 177
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPL--NLSKDPVAFEELKVKE 290
V P C ++ + P D+ YPGG FDPL + D ++L+ +E
Sbjct: 178 ------VNPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTRE 228
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI--LVAAL 321
IKNGRLAM+A LG +QA +T G I LVA L
Sbjct: 229 IKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHL 261
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 96/186 (51%), Gaps = 26/186 (13%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI V ALL + +
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 139
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
A E G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 140 AAEGQ-RGDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 311 TGKGMI 316
TGKG I
Sbjct: 198 TGKGPI 203
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 35/237 (14%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
+ R L L F+ + N S ++ +WL + P YL G LPGD G
Sbjct: 19 RTRFLTGSSGKLNREVSFRPSTSSSYN-SFKVEAKKGQWLPGLAS--PDYLDGSLPGDNG 75
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
FD GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G S+
Sbjct: 76 FDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILNV--PKWYDAGKSE 133
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 259
+ A S + VI + +L E R+ I+ ++ IF
Sbjct: 134 --------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKSYS 176
Query: 260 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF +Q TGKG
Sbjct: 177 LPPNKCGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNVTGKG 228
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 243 CARYCGIEALEPLGIFLPG-------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
+ Y + G +LPG D + PG FDPL L++DP + E+ NGR
Sbjct: 41 SSSYNSFKVEAKKGQWLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGR 100
Query: 296 LAMVAWLGFYIQAAFTGKGMILV 318
AM+ G + FT G++ V
Sbjct: 101 WAMLGVAGMLLPEVFTSIGILNV 123
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 100/198 (50%), Gaps = 31/198 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 80 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGG 138
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G VW+ G QG T DY P + I +M E R
Sbjct: 139 MGVIPESTGLVWFTSGAIPPQG-TFDYWANP----------MTIFWVNMCMMNFAEIKRG 187
Query: 246 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
+ G +A PL G G+ YPGG F+P NL KD +A ++ KE+KNGRL
Sbjct: 188 QDYWFPGSQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKDDMA--SMQKKEVKNGRL 245
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A+LG +QAA TG+G
Sbjct: 246 AMMAFLGCMVQAAVTGEG 263
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 250
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 122 V--PKWYDAGKVE--------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSV 165
Query: 251 ALEPL---GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
+P+ P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 166 NQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 220
Query: 308 AAFTGKG 314
TGKG
Sbjct: 221 HNVTGKG 227
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 25/115 (21%)
Query: 226 GVIVIAICQALLMVG---------------PECARYCGIEALEPLGIFLPG-------DI 263
GV ++C++ + G P AR +EA G +LPG +
Sbjct: 11 GVSCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK---GEWLPGLSSPTYLNG 67
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
+ PG FDPL L++DP + + E+ NGR AM+ G I T G I V
Sbjct: 68 SLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDV 122
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 250
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 122 V--PKWYDAGKVE--------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSV 165
Query: 251 ALEPL---GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
+P+ P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 166 NQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 220
Query: 308 AAFTGKG 314
TGKG
Sbjct: 221 HNVTGKG 227
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 25/115 (21%)
Query: 226 GVIVIAICQALLMVG---------------PECARYCGIEALEPLGIFLPG-------DI 263
GV ++C++ + G P AR +EA G +LPG +
Sbjct: 11 GVSCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK---GEWLPGLSSPTYLNG 67
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
+ PG FDPL L++DP + + E+ NGR AM+ G I T G I V
Sbjct: 68 SLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDV 122
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 116/244 (47%), Gaps = 47/244 (19%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGRLPGDFGFDPLGL 81
Query: 152 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYS 204
S DP + E+++ R+AMLGA GA+ PE+L G W++ G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVI 140
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIE 250
G T +Y A + + V+ + LM E R+ G+E
Sbjct: 141 PPAG-TYNYW-------ADNYTLFVLEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLE 189
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G+ GD YPGG LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQA
Sbjct: 190 K----GLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALV 245
Query: 311 TGKG 314
TG G
Sbjct: 246 TGVG 249
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I+ A+ V + + E
Sbjct: 115 AQE-------WAAIPGGQATYLGNPVPW--GNLPTILAIEFLAIAFVEHQRSMEKDTEKK 165
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
+ YPGGA FDPL SKDPV FEE KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 166 K-----------YPGGA-FDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 95/185 (51%), Gaps = 26/185 (14%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVK 119
Query: 193 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
E ++ + G YLG +P L V +AI A E R +
Sbjct: 120 AQE-------WAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFA------EHQRTMEKD 166
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAA 309
P YPGGA FDPL S+DP EE K+KEIKNGRLAM+A++GF + Q+A
Sbjct: 167 ---------PEKKKYPGGA-FDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSA 216
Query: 310 FTGKG 314
+ G G
Sbjct: 217 YPGTG 221
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI V ALL E E
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF--EFVAMAAAE 142
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 143 GQRGDA----GGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 311 TGKGMI 316
TGKG I
Sbjct: 198 TGKGPI 203
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 116/244 (47%), Gaps = 47/244 (19%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGL 81
Query: 152 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYS 204
S DP + E+++ R+AMLGA GA+ PE+L G W++ G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVI 140
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIE 250
G T +Y A + + V+ + LM E R+ G+E
Sbjct: 141 PPAG-TYNYW-------ADNYTLFVLEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLE 189
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G+ GD YPGG LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQA
Sbjct: 190 K----GLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALV 245
Query: 311 TGKG 314
TG G
Sbjct: 246 TGVG 249
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 83/142 (58%), Gaps = 10/142 (7%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWA 57
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 CQVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKG 132
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 40 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 99
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI V ALL E E
Sbjct: 100 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF--EFVAMAAAE 138
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 139 GQRGDA----GGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 193
Query: 311 TGKGMI 316
TGKG I
Sbjct: 194 TGKGPI 199
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 212
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 258
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG G
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 212
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 258
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG G
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + + G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AAVPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD G D GL++DP + + Y E+++ RWAMLG G +PEVL +G +
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 250
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 122 V--PKWYDAGKVE--------------YFASSXTLFVIEFILFHYVELRRWQDIKYPGSV 165
Query: 251 ALEPLG---IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
+P+ P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 166 NQDPIXKSYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 220
Query: 308 AAFTGKG 314
TGKG
Sbjct: 221 HNVTGKG 227
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 122/261 (46%), Gaps = 28/261 (10%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERP 122
LV ++ FTAV A+ +P + + L+ + A A A + +RP
Sbjct: 4 LVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAA---APDRP 60
Query: 123 RWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
W G P P +L G LPGD+GFD GL DP + + +++H RWAMLGA G +
Sbjct: 61 IWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFI 117
Query: 182 PEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG-----VIVIAICQAL 236
PE L +G L P W+ G + +T I + + ++G +I+ C
Sbjct: 118 PEFLTKIGI--LNTPSWYTAGEHQYFTDTTTLFIIELILIGWAEGRRWADIIINPGCVNT 175
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGR 295
+ P+ + G EP G++L DPL + P +EL+ KEIKNGR
Sbjct: 176 DPIFPQ-QQVHGHRRGEPCGLWL------------DPLGWGTVSPEKIKELRTKEIKNGR 222
Query: 296 LAMVAWLGFYIQAAFTGKGMI 316
+AM+A +G + QA TG G I
Sbjct: 223 VAMLAVMGAWFQAEHTGTGPI 243
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 212
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 258
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG G
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 101/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + + E R+ I+
Sbjct: 123 V--PKWYAAGKEE--------------YFASSSTLFVIEFILSHYV---EIRRWQDIKNP 163
Query: 251 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
IQ TGKG
Sbjct: 219 IIQHNVTGKG 228
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
PG FDPL L++DP E+ NGR AM+ G + FT G+I V
Sbjct: 71 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV 123
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 124/259 (47%), Gaps = 44/259 (16%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A FTA+ N+ L +++ +A S F+ A ++ LW
Sbjct: 2 AATFTAL----NAAPAFLTGRKVVSKARAGPAPRSTFQVSAAASQGRRLWAPG------- 50
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
+ PSYL GEL GDYG+D GL P A + Y E++HARWAML G L E++
Sbjct: 51 ---VEAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVK 107
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA---LLMVGPEC 243
G F Y+ E L PG++ G +G + + A LL E
Sbjct: 108 -PGVFF----------YNAGLPENL-----PGINFGGPEGKVNLGGLLAWEFLLFHWVEV 151
Query: 244 ARYCGIEALEPL-------GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
R+ I+ + + G +P ++ YPGG +FDP SK F+E++ KEIKNGR
Sbjct: 152 RRWQDIKKKDSVNQDPIFKGNKVPNPELGYPGG-IFDPFGFSKG--NFKEVQTKEIKNGR 208
Query: 296 LAMVAWLGFYIQAAFTGKG 314
LAMVA++GF IQA TG+G
Sbjct: 209 LAMVAFVGFIIQAQATGQG 227
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 71
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I+ A+ V + + E
Sbjct: 72 AQE-------WAAIPGGQATYLGNP--VPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKK 122
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
+ YPGGA FDPL SKDPV FEE KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 123 K-----------YPGGA-FDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYP 170
Query: 312 GKG 314
G G
Sbjct: 171 GTG 173
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 99/207 (47%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LVPE+L+ +G +S T +Y P + + Q LM
Sbjct: 112 ILVPELLERIGYIE---------NFSWYDAGTREYFVDP----------TTLFVVQMGLM 152
Query: 239 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I E P D+ YPGG FDP+ + P L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNG LAM+A++GF+ QA +TG+G I
Sbjct: 213 EIKNGGLAMLAFVGFWFQAIYTGEGPI 239
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 84/147 (57%), Gaps = 16/147 (10%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 1 MLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 57
Query: 233 CQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 289
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 58 SQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 107
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM + GF++QA TGKG I
Sbjct: 108 EIKNGRLAMFSMFGFFVQAIVTGKGPI 134
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 15/161 (9%)
Query: 156 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
M+ + Y +E++HARWA+L A G + P + G+ E +WW+ G L+G+++ Y G
Sbjct: 29 MSLKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFG 88
Query: 216 --IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 273
+P ++LA + I + L+ G E R PLG L D +PGGA FDP
Sbjct: 89 ATVP-INLAAA------VISEVNLVGGSEYYRSTNKS---PLGSDL--DRLHPGGA-FDP 135
Query: 274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L L+KDP F LKVKEI NGRLAM + LGF+++A TG+G
Sbjct: 136 LGLAKDPDQFALLKVKEIMNGRLAMFSMLGFFVKAYVTGEG 176
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
P+W+ G ++Y A + VI + + + + +Y G
Sbjct: 119 --APLWYDAG-------KVEYFAP-----ASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 253 EPL--GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
+P+ G L P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF IQ+
Sbjct: 165 DPIFKGYSLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSN 219
Query: 310 FTGKG 314
T +G
Sbjct: 220 VTHQG 224
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 256 GIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
G+ PG +N PG FDPL L+ DP + E++NGR AMV G I T
Sbjct: 55 GLASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKI 114
Query: 314 GMILVAALWRE 324
G+I A LW +
Sbjct: 115 GVI-NAPLWYD 124
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 106/204 (51%), Gaps = 34/204 (16%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P P+YL G LPGD GFD GL++DP + Y E+++ARWAMLG G
Sbjct: 44 EAKGEWLPGLPS--PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAG 101
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PEVL +G + P+W+ G S + A S + VI + +L
Sbjct: 102 MLLPEVLTKIGIIN--APLWYDAGKST--------------YFASSSTLFVI---EFILF 142
Query: 239 VGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
E R+ I+ + IF P + YP G++F+PLN +P E K KE
Sbjct: 143 HYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECGYP-GSVFNPLNF--EPTL--EAKEKE 197
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKG 314
+ NGRLAM+A+L F +Q TGKG
Sbjct: 198 LANGRLAMLAFLAFMVQHGITGKG 221
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 102/207 (49%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPG++GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE+L+ +G ++ W+ G +++Y P + I Q LM
Sbjct: 118 ILIPEILEKIG--YVKNFSWYNAG-------SVEYFADP----------TTLFIVQLALM 158
Query: 239 VGPECARYCGIEA-----LEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ I +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A+LGF QA + G I
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPI 245
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 227 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 277
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 278 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ D ++E K KE+KNGRLAM+A LGF Q A TGKG
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKG 214
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 118/245 (48%), Gaps = 48/245 (19%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P L + + + L S+ ++L +A+ E WL +P P+YL G+
Sbjct: 15 PSASLNSGFLGHSSRLGLASSTSRRSLRVEAKGE----------WLPGLPS--PAYLDGK 62
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG G L PE+L +G + P W+
Sbjct: 63 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN--APEWY 120
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI-- 257
G S + A S + V+ + +L E R+ I+ EP +
Sbjct: 121 DAGKST--------------YFASSSTLFVV---EFILFHYVEIRRWQDIK--EPGCVNQ 161
Query: 258 --------FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
P + YP G++F+PLN + E K KEI NGRLAM+A+LGF +Q A
Sbjct: 162 DPIFKSYSLPPHECGYP-GSVFNPLNFAPT----LEAKEKEIANGRLAMLAYLGFSVQHA 216
Query: 310 FTGKG 314
TGKG
Sbjct: 217 VTGKG 221
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 112/231 (48%), Gaps = 34/231 (14%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+ A L SS+ A + E + WL +P P+YL G LPGD GFD GL
Sbjct: 17 SSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGL 74
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 211
++DP + Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 75 AEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE------ 126
Query: 212 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDI 263
+ A S + VI + +L E R+ I+ ++ IF P +
Sbjct: 127 --------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHEC 175
Query: 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YP G++F+PLN + E K KE+ NGRLAM+A+L F IQ TGKG
Sbjct: 176 GYP-GSVFNPLNFAPT----LEAKEKELANGRLAMLAFLAFLIQHNVTGKG 221
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 253 EPLGIFLPG-------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
E G +LPG D + PG FDPL L++DP E+ NGR AM+ G
Sbjct: 44 EAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 103
Query: 306 IQAAFTGKGMI 316
I T G+I
Sbjct: 104 IPEVLTKAGLI 114
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 113/236 (47%), Gaps = 47/236 (19%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K A S FK A++ WL +P PSYL G LPGD GF
Sbjct: 31 NRELSIKPMA-SSSPSFKVEAKKGE------------WLPGLPS--PSYLNGSLPGDNGF 75
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D GL++DP + + E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 76 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE- 132
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL---- 259
+ A S + VI + +L E R+ I+ + IF
Sbjct: 133 -------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSL 176
Query: 260 -PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P + YPGG +F+PLN + E K KE+ NGRLAM+A+LGF IQ TGKG
Sbjct: 177 PPNECGYPGG-IFNPLNFAPT----IEAKEKELANGRLAMLAFLGFVIQHNVTGKG 227
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 113/236 (47%), Gaps = 47/236 (19%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K A S FK A++ WL +P PSYL G LPGD GF
Sbjct: 31 NRELSIKPMA-SSSPSFKVEAKKGE------------WLPGLPS--PSYLNGSLPGDNGF 75
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D GL++DP + + E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 76 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE- 132
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL---- 259
+ A S + VI + +L E R+ I+ + IF
Sbjct: 133 -------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSL 176
Query: 260 -PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P + YPGG +F+PLN + E K KE+ NGRLAM+A+LGF IQ TGKG
Sbjct: 177 PPNECGYPGG-IFNPLNFAPT----IEAKEKELANGRLAMLAFLGFVIQHNVTGKG 227
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
P+W+ G ++Y A + VI + + + + +Y G
Sbjct: 119 --APLWYDAG-------KVEYFAP-----ASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 253 EPL--GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
+P+ G L P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF IQ+
Sbjct: 165 DPIFKGYSLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSN 219
Query: 310 FTGKG 314
T +G
Sbjct: 220 VTHQG 224
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 256 GIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
G+ PG +N PG FDPL L+ DP + E++NGR AMV G I T
Sbjct: 55 GLASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKI 114
Query: 314 GMILVAALWRE 324
G+I A LW +
Sbjct: 115 GVI-NAPLWYD 124
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 134 SYLTGELPGDYGFDVAGL----SKDPMAF--QKYFNF-EILHARWAMLGALGALVPEVLD 186
SYL G LPGD+GFD GL S F Q++ + E++HARWAMLGA G L PE L
Sbjct: 12 SYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYL- 70
Query: 187 MVGAFHLVEP-----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL---M 238
A V P +W++ G+ DY G+P L + + ++++ + + L
Sbjct: 71 ---AHEKVIPKATGLLWFKTGFLPQASAGFDY-GLP-LGVLFAVQMVMMGVAEGLRGAEY 125
Query: 239 VGPECARYCGIEALEPL-GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
+ P R + LE L G YPGG +F+PL L + P A E++ EI++GRLA
Sbjct: 126 IAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGRLA 185
Query: 298 MVAWLGFYIQAAFTGKG 314
M+A LG+ QA TG+G
Sbjct: 186 MLACLGYAAQAVVTGRG 202
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 118/253 (46%), Gaps = 38/253 (15%)
Query: 83 ELLQNRMLE-TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
+LL R ++ T + S K + + A + G +R W SYL G LP
Sbjct: 16 QLLGGRPVQWTPSRSFSSSRKASFVVKAASTPPVKQGADRQLWFAS--KQSLSYLDGSLP 73
Query: 142 GDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
GD+GFD GLS DP + EI++ R+AMLG GA+ PE+L +G L+
Sbjct: 74 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLG---LIP 129
Query: 196 P----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY----- 246
P W++ G G T Y P + + + LM E R+
Sbjct: 130 PETALPWFQTGVIPPAG-TYSYWADP----------YTLFVLEMALMGFAEHRRFQDWAK 178
Query: 247 ---CGIEALEPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
G + FL GD YPGG +F+PL KD + +ELK+KE+KNGRLAM+A
Sbjct: 179 PGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAI 238
Query: 302 LGFYIQAAFTGKG 314
LGF+IQ TG G
Sbjct: 239 LGFFIQGLVTGVG 251
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 79/144 (54%), Gaps = 16/144 (11%)
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG L PE+L G E VW++ G Q LDYLG P L +Q ++ CQ
Sbjct: 2614 ALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSL--VHAQNIVATLACQV 2670
Query: 236 LLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+LM E R G E L+PL YPG + FDPL L+ DP F ELKVKEIK
Sbjct: 2671 ILMGLVEGYRVNGGPAGEGLDPL---------YPGES-FDPLGLADDPDTFAELKVKEIK 2720
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM + GF++QA TGKG I
Sbjct: 2721 NGRLAMFSMFGFFVQAIVTGKGPI 2744
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G LP DYGFD L DP E++H RWAM+G G LVP +L +GA +
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
+ PVW+ G ++ + + + + L M E R+ I++
Sbjct: 69 V--PVWFEAGKVANDNSSVPF--------------SALLMVEFLAMGFVETKRWYDIKSP 112
Query: 253 EPLG---IFLPGD------INYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWL 302
G IF D + YPGG FDP SK +++ L+VKEI NGRLAMVA +
Sbjct: 113 GSQGDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMV 172
Query: 303 GFYIQAAFTGKGMI 316
GF+ Q A TGKG +
Sbjct: 173 GFWAQYAATGKGPV 186
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 110/227 (48%), Gaps = 45/227 (19%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 163
+Q + LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 48 KQGADRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWL 96
Query: 164 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGIP 217
E+++ R+AMLGA GA+ PE+ G+ L+ P W++ G G T +Y P
Sbjct: 97 AYGEVINGRFAMLGAAGAIAPEIF---GSLGLIPPETALPWFKTGVIPPAG-TYNYWADP 152
Query: 218 GLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYPG 267
+ + + LM E R+ G + L FL GD YPG
Sbjct: 153 ----------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPG 202
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQ TG G
Sbjct: 203 GPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVG 249
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVL 185
MLGALG + PE+L
Sbjct: 104 MLGALGCVFPEIL 116
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + + G YLG P G + + + L + ++ G
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAPV-----PWGYLPVILAVEFLSIAFVESQRNG---- 160
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
EP P YPGGA FDPL SKDP F+E KVKEIKNGRLA++A++GF +QA+
Sbjct: 161 EPD----PEKRKYPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQAS 212
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 37/212 (17%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G LVP++L G G+S + +Y P + + Q
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 160
Query: 237 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 284
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 161 LMGWAEGRRWADYLRPGCVDIEPR---FPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ KEIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPI 249
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 110/227 (48%), Gaps = 45/227 (19%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 163
+Q + LW+ ++ +YL G LPGD+GFD GLS DP +
Sbjct: 48 KQGADRQLWFASKQSL----------TYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWL 96
Query: 164 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGIP 217
EI++ R+AMLGA GA+ PE+L G L+ P W++ G G T DY P
Sbjct: 97 AYGEIINGRFAMLGAAGAIAPEILGKAG---LIPPETALPWFQTGVIPPAG-TYDYWADP 152
Query: 218 GLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYPG 267
+ + + LM E R+ G + L FL GD YPG
Sbjct: 153 ----------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPG 202
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G LF+PL KD + +ELK+KE+KNGRLAM+A LG+++Q TG G
Sbjct: 203 GPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGVG 249
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 37/212 (17%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G LVP++L G G+S + +Y P + + Q
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 160
Query: 237 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 284
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 161 LMGWAEGRRWADYLRPGCVDIEPR---FPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ KEIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPI 249
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
VE W + + G YLG P G + + + L + ++ G
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAPV-----PWGYLPVILAVEFLSIAFVESQRNG---- 160
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
EP P YPGGA FDPL SKDP F+E KVKEIKNGRLA++A++GF +QA+
Sbjct: 161 EPD----PEKRKYPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQAS 212
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG G+L E+L
Sbjct: 8 DAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 67
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI + + + + M E R
Sbjct: 68 YD--APLW------AVNGGKATWFGIDVPF-----DLNTLLAFEFVAMAAAEGQRGDA-- 112
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G + YPGGA FDPL +KD ELK+KE+KNGRLAMVA+LGF Q A
Sbjct: 113 ----------GGVVYPGGA-FDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAA 161
Query: 311 TGKGMI 316
TGKG I
Sbjct: 162 TGKGPI 167
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++VI
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILVIWA 57
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 TQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKG 132
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 118/253 (46%), Gaps = 38/253 (15%)
Query: 83 ELLQNRMLE-TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
+LL R ++ T + S K + + A + G +R W SYL G LP
Sbjct: 16 QLLGGRPVQWTPTRSFSSSRKASFVVKAASTPPVKQGADRQLWFAS--KQSLSYLDGSLP 73
Query: 142 GDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
GD+GFD GLS DP + EI++ R+AMLG GA+ PE+L +G L+
Sbjct: 74 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLG---LIP 129
Query: 196 P----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY----- 246
P W++ G G T Y P + + + LM E R+
Sbjct: 130 PETALPWFQTGVIPPAG-TYSYWADP----------YTLFVLEMALMGFAEHRRFQDWAK 178
Query: 247 ---CGIEALEPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
G + FL GD YPGG +F+PL KD + +ELK+KE+KNGRLAM+A
Sbjct: 179 PGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAI 238
Query: 302 LGFYIQAAFTGKG 314
LGF+IQ TG G
Sbjct: 239 LGFFIQGLVTGVG 251
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 97/190 (51%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL++DP + + E+ + RWAMLG G L+PEV +G +
Sbjct: 62 PDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
P W+ G + + A S + VI + +L E R+ I+
Sbjct: 122 --APQWYDAGKQE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 162
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 163 GSVNQDPIFKSYRLPPNEVGYPGG-IFNPLNFAPS----LEAKEKEIANGRLAMLAFLGF 217
Query: 305 YIQAAFTGKG 314
IQ TGKG
Sbjct: 218 LIQHNLTGKG 227
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PG FDPL L++DP + E++NGR AM+ G + FT G+I
Sbjct: 70 PGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGII 120
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 95/187 (50%), Gaps = 30/187 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL++ P F +Y E++H RWAML G L+PE L G +
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEAL---GLGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP----GLHLAGSQGVIVIAICQALLMVGPECARYCG 248
V W + G YLG P L + + + +A +A P+ +
Sbjct: 112 WVSAQQW----AATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEPDHEKR-- 165
Query: 249 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
YPGG FDPL +KDP EE K+KE+KNGRLA++A+LGF +QA
Sbjct: 166 ---------------KYPGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQA 209
Query: 309 -AFTGKG 314
A+ G G
Sbjct: 210 IAYPGTG 216
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 37/212 (17%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 23 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 79
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G LVP++L G G+S + +Y P + + Q
Sbjct: 80 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 121
Query: 237 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 284
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 122 LMGWAEGRRWADYLRPGCVDIEPR---FPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 178
Query: 285 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ KEIKNGRLAM+A++GF+ QA +TG+G I
Sbjct: 179 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPI 210
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 28/224 (12%)
Query: 97 LQDSSKFKALARQARNESLWYGEER---PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+Q + +A+QA N S+ R R P P +LPG++ FD L K
Sbjct: 4 MQRTFGASPVAKQAVNRSVVRPSIRVQAQRAGNFAPGSEPKEYLNDLPGNFNFDPLELGK 63
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
+ Q+Y E++H RWAMLGA G L EVL + + P+W + G+ +
Sbjct: 64 EKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLGNWYD--APLW------AVTGDKPTW 115
Query: 214 LGIP-GLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
GI +A GV V+A+ A E R + + L YPGGA FD
Sbjct: 116 FGIEVPFDIATILGVEVVAMAVA------EGLRNDNQDMEKRL---------YPGGA-FD 159
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL SKDP +FE+ K+KE+KNGRLAMVA LGF Q A TGK ++
Sbjct: 160 PLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPIL 203
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 100/190 (52%), Gaps = 29/190 (15%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GEL GDYG+D GL DP+A + Y E++HARWAMLG G LV EV+ F+
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVKPDVYFY 101
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
G + E + + GL + +LM E R+ +
Sbjct: 102 -------EAGLPQNLPEPFTNVNMGGL-----------LAWEFILMHWVEVRRWQDYKNF 143
Query: 253 -----EPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+P+ G +P ++ YPGG +FDPL SK +EL+ KEIKNGRLAMVA++GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGF 200
Query: 305 YIQAAFTGKG 314
+QA TGKG
Sbjct: 201 VLQAQATGKG 210
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD L++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKQE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + P A E K KE+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTA--EAKEKELANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 219 IVQHNVTGKG 228
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 85/156 (54%), Gaps = 14/156 (8%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 220
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G +H
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG-KNIH 59
Query: 221 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
+ V+ + G E R LE D +PGG FDPL L+KDP
Sbjct: 60 INLVVAVVAEVVLVG----GAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDP 106
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 107 DQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE P DYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVL 185
MLGALG + PE+L
Sbjct: 106 MLGALGCVFPEIL 118
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 94/184 (51%), Gaps = 24/184 (13%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L G +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---GLGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEA 251
V+ W + L G YLG P +G + + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP-----VPRGTLPTVLAIEFLAISFVEHQRSMEKD- 161
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAF 310
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 --------PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 311 TGKG 314
G G
Sbjct: 213 PGTG 216
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 227 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 277
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 278 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ D ++E K KE+KNGRLAM+A LGF Q A TGKG
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKG 214
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 227 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 277
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 278 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ D ++E K KE+KNGRLAM+A LGF Q A TGKG
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKG 214
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 110/236 (46%), Gaps = 30/236 (12%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
R L +AA+ + AR+ + ER WL + PSYL GELPGD+GF
Sbjct: 4 ERPLHASRAAILRHLELLLTVSAARSARVVVRAERASWLPG--SEIPSYLKGELPGDFGF 61
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D L +DP A + Y E+ + RWAML A G L ++L +GA W
Sbjct: 62 DPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPW------F 115
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEALEPL--GIFL 259
+ Y + I + LL E RY G +P+ L
Sbjct: 116 KASDFTYFA----------PTSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSL 165
Query: 260 P--GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
P + YPGG +FDPL SK +A ELK+KEIKN RLAM+A LGF++QA TGK
Sbjct: 166 PSGNEPGYPGG-IFDPLGYSKGNMA--ELKLKEIKNARLAMLAVLGFFVQAKTTGK 218
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG +RP+WLGP + PSYLTGE PGDYG+D AGLS +KY E++H RW MLG
Sbjct: 62 WYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSAT-GDLRKYRTIEVIHGRWPMLG 120
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL 214
ALG LVPE++ + EPVW++ G LDYL
Sbjct: 121 ALGCLVPELIKG----DIAEPVWFKAGAQIFSEGGLDYL 155
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 25/196 (12%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GL DP + EI++ R+AMLGA+GA+ PE+L
Sbjct: 79 SYLDGSLPGDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGK 137
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
+G + W+R G G T DY P ++ A + L + RY
Sbjct: 138 LGLIPQETALPWFRTGVIPPAG-TYDYWADPFTLFVLEMALMGFAEHRRL-----QDYRY 191
Query: 247 CGIEALEPLGIFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
G + + FL G+ +YPGG LF+PL KD + +ELK+KE+KNGRLAM
Sbjct: 192 PGSMSKQ---YFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAM 248
Query: 299 VAWLGFYIQAAFTGKG 314
+A +G++IQ TG G
Sbjct: 249 LAIVGYFIQGLVTGVG 264
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P PSYL GE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
EPVW++ G LDYLG P +L +Q ++ + Q +LM R
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVVGFRI 118
Query: 247 CGIEALEPLGIFLPGDINYPGG 268
G++ + G+ YPGG
Sbjct: 119 NGLDGVG------EGNNLYPGG 134
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD L++DP + + E+++ RWA LG G L+PEVL +G +
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + EE K +E+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----EEAKERELANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 219 IVQHNVTGKG 228
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R+L K + SS FK A++ WL +P P YL G LPGD GFD
Sbjct: 32 RVLSVKPVSASSSSSFKVEAKKGE------------WLPGLPS--PMYLNGSLPGDNGFD 77
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
GL++DP + Y E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 78 PLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE-- 133
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL----- 259
+ A S + VI + +L E R+ I+ + IF
Sbjct: 134 ------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 178
Query: 260 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P + YPGG +F+PLN + E K KEI NGRLAM+A+LGF +Q TGKG
Sbjct: 179 PNECGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIVQHNVTGKG 228
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 110/226 (48%), Gaps = 34/226 (15%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L SS+ A + E + WL +P P+YL G LPGD GFD GL++DP
Sbjct: 30 LGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGLAEDPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
+ Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 88 NLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE----------- 134
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGG 268
+ A S + VI + +L E R+ I+ ++ IF P + YP G
Sbjct: 135 ---YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-G 187
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
++F+PLN + E K KE+ NGRLAM+A+L F IQ TGKG
Sbjct: 188 SVFNPLNFAPT----LEAKEKELANGRLAMLAFLAFLIQHNVTGKG 229
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 253 EPLGIFLPG-------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
E G +LPG D + PG FDPL L++DP E+ NGR AM+ G
Sbjct: 52 EAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 111
Query: 306 IQAAFTGKGMI 316
I T G+I
Sbjct: 112 IPEVLTKAGLI 122
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+ARQ RP W P P++L G L GDYGFD L ++P + Y
Sbjct: 14 GVARQTPRSVRVKAATRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF----------- 117
Query: 225 QGVIVIAICQALLMVGPECARYCGIEALEPLGI---------FLPGDINYPGGALFDPLN 275
+ I Q LM E R+ + G F + YPGG FDP+
Sbjct: 118 ---PTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFFDPMG 174
Query: 276 LSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LS+ D ++E K KEIKNGRLAM+A LGF Q A TGKG
Sbjct: 175 LSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAATGKG 214
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 95/183 (51%), Gaps = 23/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL---GYGN 110
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V W + G YLG P + VI + L + E R
Sbjct: 111 WVSAQKW----AATPGGQATYLGNP----VPWGNLPVILAIEFLAIAFAESQRNG----- 157
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 311
EP P YPGGA FDPL SK EELK+KEIKNGRLA+VA+LGF +QA A+
Sbjct: 158 EP----DPEKRKYPGGA-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFAVQAIAYP 211
Query: 312 GKG 314
G G
Sbjct: 212 GTG 214
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 92/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G L+PE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEALGLGNWVK 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G+ + + +P + LA I Q + PE +
Sbjct: 115 AQEWAAAPGGQATYLGQPVPWGTLPTV-LAIEFVAIAFVEHQRSMEKDPEKKK------- 166
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 167 ------------YPGGA-FDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD GL DP+ + E++HARWAMLGA G + PEVL
Sbjct: 55 AYLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 113
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
G + W+ G G Y P I + + M E R
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWADP----------YTIFFVEIVAMQFAELRRL 163
Query: 246 -------------YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ G+EA+ GD YPGG F+ NL K A +ELK+KEIK
Sbjct: 164 QDFRYPGSMGQQYFLGLEAI----FKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIK 219
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM+A LG+ QA TGKG
Sbjct: 220 NGRLAMLAMLGYGAQAVMTGKG 241
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 58/93 (62%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R ++ LWYG +R +LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVNYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197
E++H RWAMLGALG + PEVL+ H +P
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWVRVHFKDPC 129
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
M++ A + + KA+ +S G E P+ L D P+ L + G++GFD
Sbjct: 4 MMKRSAVAARPAVSRKAVVTCVARQSWLPGSEIPKHL-----DSPAALA--MAGNFGFDP 56
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
GL KD A + Y E++HAR AM G L+P +L GA ++ P W+ G ++
Sbjct: 57 LGLGKDAEALRWYQQAELVHARTAMTAVAGILIPGLLTKAGALNV--PEWYDAGKVAIES 114
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--YCGIEALEPLGIFLPGDINYP 266
+ + + L + G + Q G + + + G E GD YP
Sbjct: 115 SFAPFGALLAVQLFLT-GFVEAKRWQDFKKPGSQAEKGSFLGFET----AFAGTGDNGYP 169
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
GG +FDPL LSKD + K+KEIKNGRLAMVA+LGF Q TGKG I
Sbjct: 170 GG-IFDPLGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPI 218
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD GL + P +++ E++H RWAML G LVPE L +
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I++ A+ V E R +
Sbjct: 117 AQE-------WAAVPGGQATYLGQPVPW--GTLPTILVIEFLAIAFV--EHQRSMEKD-- 163
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP +E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYP 215
Query: 312 GKG 314
G G
Sbjct: 216 GTG 218
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG L GD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 125 V--PEWYDAGKEQ--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 165
Query: 251 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 166 GSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 220
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 221 VVQHNVTGKG 230
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 134 SYLTGELPGDYGFDVAGL--SKDPMAFQK---YFNFEILHARWAMLGALGALVPEVLDMV 188
SYL G LPGDYGFD GL + P F + EI++ R+AMLGA+GA+ PE+L +
Sbjct: 77 SYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKL 136
Query: 189 GAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY- 246
G + W++ G G T +Y P + + + LM E R
Sbjct: 137 GLIPQETALPWFQTGVIPPAG-TYNYWADP----------FTLFVLEMALMGFAEHRRLQ 185
Query: 247 -------CGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
G + L FL G N YPGG LF+PL KD + +ELK+KE+KNGRLA
Sbjct: 186 DYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLA 245
Query: 298 MVAWLGFYIQAAFTGKG 314
M+A LG++IQ TG G
Sbjct: 246 MLAILGYFIQGLVTGVG 262
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWA 57
Query: 233 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 VQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM + GF++QA TGKG
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKG 132
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD GL DP+ + E++HARWAMLGA G + PEVL
Sbjct: 55 AYLDGSLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 113
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
G + W+ G G Y P I + + M E R
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWADP----------YTIFFVEIVAMQFAELRRL 163
Query: 246 -------------YCGIEALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
+ G+EA IF GD YPGG F+ NL K A +ELK+KEI
Sbjct: 164 QDFRYPGSMGQQYFLGLEA-----IFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 218
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAM+A LG+ QA TGKG
Sbjct: 219 KNGRLAMLAMLGYGAQAVMTGKG 241
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H+RWAML
Sbjct: 64 GPDRPVWFPGTSP---PPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAV 120
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G L+PE+L G + E W+ G +Y P + I Q
Sbjct: 121 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFIAQMA 161
Query: 237 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 287
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 162 LMGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 221
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
KEIKNGRLAM+A++GF+ QA +TG+G +
Sbjct: 222 TKEIKNGRLAMLAFVGFWFQAVYTGQGPV 250
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 102/221 (46%), Gaps = 32/221 (14%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K R R+ S+ +P W + D P +L GELPGDYGFD L K+P + Y
Sbjct: 17 KTTKRSQRSVSV-RASTQPMWFPGM--DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQ 73
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E+ H RWAMLG GA PE+L +G L P W QG D
Sbjct: 74 AELQHGRWAMLGVAGAAAPEILTKMGISDL--PNWHDA--PNYQGYFTD----------- 118
Query: 224 SQGVIVIAICQALLMVGPECARYCGIEALEPL-------GIFLP-GDINYPGGALFDPLN 275
+ Q L+M E R+ + + G LP G + YPGG +FDPL
Sbjct: 119 ---ATTLFWVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKLPSGIVGYPGG-IFDPLG 174
Query: 276 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+K + +LK KEI NGRLAMVA+ G +Q TG G +
Sbjct: 175 YAKGDL--NKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPV 213
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ L G YLG P + V+AI + L + E R +
Sbjct: 115 AQE-------WAALPGGQATYLGNP---VPWGTLPTVLAI-EFLAISFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA---ICQALLMVGPEC 243
+G VW++ G G T +Y P ++ A Q G
Sbjct: 129 IGIIPQETAVVWFKTGVFPPAG-TYNYWADPYTLFFLEMALMGFAEHRRAQDFYKPGSMG 187
Query: 244 ARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 302
+Y G E LG GD YPGG +F+P KD + LK+KE+KNGRLAM+A L
Sbjct: 188 KQYFLGFEKY--LG--GSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNGRLAMLAIL 242
Query: 303 GFYIQAAFTGKG 314
G++IQA FTG G
Sbjct: 243 GYFIQAPFTGVG 254
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAAIPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 212
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 258
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 259 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG++++A TG G
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVG 252
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVTEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 32/205 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE + +G L++ W S+ +Y P + + Q LM
Sbjct: 116 ILLPEWFESLG---LIQNFSWYDAGSR------EYFADP----------TTLLVAQLALM 156
Query: 239 VGPECARYCGIEALEPLGIFL--------PGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ + + + L D+ YPGG FDP+ + P L+ K
Sbjct: 157 GWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTK 216
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIKNGRLAM+A++G + QA +TG+G
Sbjct: 217 EIKNGRLAMLAFVGLWFQAIYTGQG 241
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 32/205 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE + +G L++ W S+ +Y P + + Q LM
Sbjct: 116 ILLPEWFESLG---LIQNFSWYDAGSR------EYFADP----------TTLLVAQLALM 156
Query: 239 VGPECARYCGIEALEPLGIFLP--------GDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ + + + L D+ YPGG FDP+ + P L+ K
Sbjct: 157 GWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTK 216
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKG 314
EIKNGRLAM+A++G + QA +TG+G
Sbjct: 217 EIKNGRLAMLAFVGLWFQAIYTGQG 241
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 43/241 (17%)
Query: 91 ETKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
T AAL+ S+ K+ LAR E + WL +P P+YL G LP
Sbjct: 7 RTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+
Sbjct: 65 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDA 122
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIF 258
G + + A S + VI + +L E R+ I+ + IF
Sbjct: 123 GKAT--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIF 165
Query: 259 L-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T K
Sbjct: 166 KSYSLPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 314 G 314
G
Sbjct: 221 G 221
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 95/197 (48%), Gaps = 35/197 (17%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD---MVG 189
P +L G +PGDYGFD GL +D +A + Y E+ HARWAMLG G PE++ + G
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 190 AF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-- 246
A + E W Y+ P + + Q +M E R+
Sbjct: 112 AMPNWAEAPLWD-----------GYMASPN----------TLFVVQMFMMNWAEVRRWQD 150
Query: 247 ---CGIEALEPLGIFLPGDIN----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299
G +PL GD N YP G LFDP+ ++KDP + LKVKEI NGRLAMV
Sbjct: 151 MKNPGTMNEDPLTGANKGDTNTDVGYPKG-LFDPMGMAKDPEKVKVLKVKEIANGRLAMV 209
Query: 300 AWLGFYIQAAFTGKGMI 316
A +G IQ TG G I
Sbjct: 210 AVMGCIIQNEATGVGPI 226
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
+G VW++ G G T +Y P + + LM E R
Sbjct: 129 IGIIPQQTAVVWFKTGVFPPAG-TYNYWADP----------YTLFFLEMALMGFAEHRRA 177
Query: 247 CGIEALEPLG--IFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
+G FL GD YPGG +F+P KD + LK+KE+KNGRL
Sbjct: 178 QDYYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNGRL 236
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A LG++IQA FTG G
Sbjct: 237 AMLAILGYFIQAPFTGVG 254
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 95/185 (51%), Gaps = 27/185 (14%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL---GYGN 67
Query: 193 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
V W + G YLG +P L V IAI A E R
Sbjct: 68 WVSAQKW----AATPGGQATYLGNPVPWGTLPVILAVEFIAIAFA------ESQRN---- 113
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-A 309
G P YPGGA FDP+ SK EELK+KEIKNGRLA+VA+LGF IQA A
Sbjct: 114 -----GESDPEKRKYPGGA-FDPMGFSKG-ANLEELKLKEIKNGRLALVAFLGFAIQAIA 166
Query: 310 FTGKG 314
+ G G
Sbjct: 167 YPGTG 171
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 109
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G W+ G + + + + +G + +
Sbjct: 110 ILIPECLERLGFIENFS--WYDAGAQEFFADPTTLFVVQLALMGWVEGR------RWADL 161
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLA 297
+ P C I+ P D+ YPGG FDP + P L+ KEIKNGRLA
Sbjct: 162 INPGCVD---IQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLA 218
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A++GF QA +TG+G I
Sbjct: 219 MLAFVGFCFQAIYTGEGPI 237
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 40/248 (16%)
Query: 76 IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSY 135
A +P+ LL + L K L SS LAR E + WL +P P+Y
Sbjct: 5 TARTPVAALLSSASL--KSTFLGQSST--RLARAPTTRRNVRAEAKGEWLPGLPS--PTY 58
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
L G LPGD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G
Sbjct: 59 LNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--A 116
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI--------AICQALLMVGPECARYC 247
P W+ G + + A S + VI I Q + P C
Sbjct: 117 PQWYDAGKAT--------------YFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQD 162
Query: 248 GIEALEPLGIFLPGD-INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
I LP D YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +
Sbjct: 163 PIFK----SYRLPSDECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLV 213
Query: 307 QAAFTGKG 314
Q T KG
Sbjct: 214 QHNVTQKG 221
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD GL DP+ + E++HARWAMLGA G + PEVL
Sbjct: 42 AYLDGTLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 100
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
G + W+ G G Y P I + + M E R
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWADP----------YTIFFVEIVAMQFAELRRL 150
Query: 246 -------------YCGIEALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 291
+ G+EA IF GD YPGG F+ NL K A +ELK+KEI
Sbjct: 151 QDFRYPGSMGQQYFLGLEA-----IFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 205
Query: 292 KNGRLAMVAWLGFYIQAAFTGKG 314
KNGRLAM+A LG+ QA TGKG
Sbjct: 206 KNGRLAMLAMLGYGAQAVLTGKG 228
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 114/237 (48%), Gaps = 43/237 (18%)
Query: 95 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
FD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G +
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAGKAT 126
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 259
+ A S + VI + +L E R+ I+ + IF
Sbjct: 127 --------------YFASSSTLFVI---EFILFHSVEIRRWQDIKNPGCVNQDPIFKSYS 169
Query: 260 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T KG
Sbjct: 170 LPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQKG 221
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 118/249 (47%), Gaps = 46/249 (18%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q+ + ++K++ + +Q N LW+ ++ SYL G LPGD+G
Sbjct: 28 QSPFVSSRKSSFVVRAASTPPVKQG-NRQLWFASKQSL----------SYLDGSLPGDFG 76
Query: 146 FDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP--- 196
FD GLS DP + EI++ R+AMLGA+GA+ PE+L G L+ P
Sbjct: 77 FDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG---LIPPETA 132
Query: 197 -VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
W+R G G T Y P + + + LM E R+ +
Sbjct: 133 LPWFRTGVIPPAG-TYSYWADP----------YTLFVFEMALMGFAEHRRFQDWAKPGSM 181
Query: 256 G--IFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
G FL G+ YPGG LF+PL KD + ++LK+KE+KNGRLAM+A LG++
Sbjct: 182 GKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 241
Query: 306 IQAAFTGKG 314
+Q TG G
Sbjct: 242 VQGLVTGVG 250
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 108/239 (45%), Gaps = 36/239 (15%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFD 147
KKAA S K ++ + + WYG+ R P L D PSY+ G L GDYGFD
Sbjct: 59 VKKAAPVKKSSGKP-SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFD 117
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L D Y E++HARWAML G ++PE L + G VW G L
Sbjct: 118 PLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGIPGG------VWTETGKVFLD 170
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG------ 261
GE G P + Q I+ A Q L E R + E F+PG
Sbjct: 171 GEA----GRPEIL----QNPIIFAGIQIALFAAVEGYRSGKVAPPEG---FVPGKGKFSG 219
Query: 262 ------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
D PGG L D N++ P LKVKEIKNGRLAM+A LG ++Q TG+G
Sbjct: 220 SDFAGLDPINPGGPL-DFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGLTTGEG 277
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I+ A+ V E R +
Sbjct: 117 AQE-------WAAVPGGQATYLGNPVPW--GTLPTILAIEFLAISFV--EHQRSMEKD-- 163
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYP 215
Query: 312 GKG 314
G G
Sbjct: 216 GTG 218
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 114/250 (45%), Gaps = 45/250 (18%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L KAAL F+A A QAR + E+R W P P YL GEL GDYGFD
Sbjct: 4 LVANKAAL----GFRAPA-QARRSVVARAEQRASWFPGNPA--PEYLKGELAGDYGFDPL 56
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG----AFHLVEPVWWRVGYSK 205
G +P + E++H RWAMLGA G L+PE+ + G A L P WW G K
Sbjct: 57 GFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAG--K 114
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEAL----EPLG 256
+ E+ G + + LLM E R G +A+ PLG
Sbjct: 115 VVAES------------GPWSMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLG 162
Query: 257 I---------FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
+ + + YPGG +FDP +SK+ ++ K E+ NGRLAM A GF Q
Sbjct: 163 LGSITGVEEPLVAKENGYPGG-IFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQ 221
Query: 308 A-AFTGKGMI 316
A+ GKG I
Sbjct: 222 HIAYPGKGPI 231
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP LKVKEIKNGRLAM A LGF+IQA TG+G +
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPV 142
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 101/225 (44%), Gaps = 42/225 (18%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL--------------------------S 152
+RP W G P P +L G LPGD+GFD GL +
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTA 118
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP + + E++H RWAMLGA G +PE L +G L P W+ G + +T
Sbjct: 119 SDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTT 176
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 272
+ + + ++G I + P C + + P D+ YPGG FD
Sbjct: 177 LFIVELIFIGWAEGRRWADI------LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFD 227
Query: 273 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
PL S P +EL+ KEIKNGRLAM+A +G + Q +TG G I
Sbjct: 228 PLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 272
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 94/190 (49%), Gaps = 28/190 (14%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G L GDYGFD GL +P Y E+ +ARWAMLG G L E+++
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
WW YS E L +++ G I + LLM E R+ I
Sbjct: 100 --PEQWW---YSAGMPENLPSFDGNKVNMGG------ILAWEFLLMHFVEVRRWQDIRKK 148
Query: 253 EPLGI--FLPG------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+ + F P ++ YPGG FDPL SK F+E++ KEIKNGRLAMVA++ F
Sbjct: 149 DSVNADPFNPNLKVPNPEMGYPGGP-FDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAF 205
Query: 305 YIQAAFTGKG 314
IQA TGKG
Sbjct: 206 TIQAQATGKG 215
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNELDFE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP LKVKEIKNGRLAM A LGF+IQA TG+G +
Sbjct: 105 DPDQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPV 142
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD L + P +++ E++H RWAML G LVPE L G +
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P + I + + L + E R +
Sbjct: 113 WVKAQEW----AALPGGQATYLGNP----VPWGTLPTILVIEFLSIAFVEHQRSMEKD-- 162
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP F E K+KE+KNGRLA++A++G + Q A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYP 214
Query: 312 GKG 314
G G
Sbjct: 215 GTG 217
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 110/228 (48%), Gaps = 45/228 (19%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q + LW+ ++ SYL G LPGDYGFD GLS DP +
Sbjct: 41 AKQGADRQLWFASKQSL----------SYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKW 89
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGI 216
E+++ R+AMLGA+GA+ PE+ +G ++ P W++ G G T +Y
Sbjct: 90 LAYGEVINGRYAMLGAVGAIAPEIFGKMG---IIPPETALPWFKTGVIPPAG-TYNYW-- 143
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYP 266
A S + V + LM E R G + L FL GD +YP
Sbjct: 144 -----ADSYTLFVFNMA---LMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYP 195
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
GG LF+PL K ELK+KEIKNGRLAM+A LG++IQ TG G
Sbjct: 196 GGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVG 243
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 114/240 (47%), Gaps = 39/240 (16%)
Query: 95 AALQDSSKF--KALA----RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+A Q S F KA A +Q N LW+ + SYL G LPGDYGFD
Sbjct: 29 SASQKKSSFVVKATATPPVKQGANRPLWFASSQSL----------SYLDGSLPGDYGFDP 78
Query: 149 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VW 198
GLS DP + EI++ R+AMLGA GA+ PE+L G L+ P W
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG---LIPPETALPW 134
Query: 199 WRVGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-CGIEALEP 254
++ G G D + L +A G Q G +Y G+E
Sbjct: 135 FQTGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFLGLEK--- 190
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ TG G
Sbjct: 191 -GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 23 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 79
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G W+ G + + + + +G + +
Sbjct: 80 ILIPECLERLGFIENFS--WYDAGAQEFFADPTTLFVVQLALMGWVEGR------RWADL 131
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLA 297
+ P C I+ P D+ YPGG FDP + P L+ KEIKNGRLA
Sbjct: 132 INPGCVD---IQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLA 188
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M+A++GF QA +TG+G I
Sbjct: 189 MLAFVGFCFQAIYTGEGPI 207
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L SS+ A R E + WL +P PSYL G L GD GFD GL++DP
Sbjct: 27 LGHSSRLGRTASPTRRSX--KAEAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPE 82
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
+ + E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 83 NLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE----------- 129
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGG 268
+ A S + V+ + +L E R+ I+ ++ IF P + YP G
Sbjct: 130 ---YFASSSTLFVV---EFILFXYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-G 182
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
++F+PLN + E K KE+ NGRLAM+A+LGF IQ TGKG
Sbjct: 183 SVFNPLNFAPT----LEAKEKELANGRLAMLAFLGFLIQHNVTGKG 224
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPV 142
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 114 SLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
S WYG R P L I D PSYL G L GDYGFD L KD ++Y E++HA
Sbjct: 82 SKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHA 140
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAML G ++PE L + G VW G L GE G P + Q +
Sbjct: 141 RWAMLAIPGIVIPEALGIPGG------VWTETGKVFLDGEA----GRPEIL----QNPYL 186
Query: 230 IAICQALLMVGPECARYCGIEALEPL----GIFLPGDIN-----YPGGALFDPLNLSKDP 280
A Q L E R A + G F D + PGG L D N++ P
Sbjct: 187 FAAIQIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGPL-DFFNVAATP 245
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LKVKEIKNGRLAM+A LG ++Q TG+G
Sbjct: 246 DDLAVLKVKEIKNGRLAMIAMLGVFVQGLTTGEG 279
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 111/238 (46%), Gaps = 19/238 (7%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS--QSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWR 200
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 201 VGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-CGIEALEPLG 256
G G D + L +A G Q G +Y G+E G
Sbjct: 137 TGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFLGLEK----G 191
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ TG G
Sbjct: 192 LAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD GL++DP + Y E+++ARWAMLG G LVPEVL +G +
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 193 LVEPVWWRVGYSKL--QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
P W+ G S TL + H + I Q ++ P C I
Sbjct: 116 --APQWYDAGKSTYFASSSTLFVIEFILFH------YVEIRRWQDIIK-NPGCVNQDPIF 166
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
L P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q
Sbjct: 167 KNYSLP---PHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFMVQHGI 218
Query: 311 TGKG 314
TGKG
Sbjct: 219 TGKG 222
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD GL+ P +++ E+ H RWAML G LVPE L +
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 85
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G Y G+P + ++AI + L + E R +
Sbjct: 86 AQE-------WAAVPGGQATYFGVP---VPWGNLPTILAI-EFLAIAFAEHQRTMEKD-- 132
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDPV EE K+KEI+NGRLAM+A++GF + Q+ +
Sbjct: 133 -------PEKKKYPGGA-FDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYP 184
Query: 312 GKG 314
G G
Sbjct: 185 GTG 187
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 111/238 (46%), Gaps = 19/238 (7%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS--QSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWR 200
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 201 VGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-CGIEALEPLG 256
G G D + L +A G Q G +Y G+E G
Sbjct: 137 TGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFLGLEK----G 191
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ TG G
Sbjct: 192 LAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 100/190 (52%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GF GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILN 71
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 72 V--PKWYDAGKEE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 112
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P ++ YPGG +F+PLN + P A E K KEI NGRLAM+A+LGF
Sbjct: 113 GSVNQXPIFKNYSLPPNEVGYPGG-IFNPLNFA--PTA--EAKEKEIANGRLAMLAFLGF 167
Query: 305 YIQAAFTGKG 314
+Q GKG
Sbjct: 168 IVQHNVVGKG 177
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 220
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G +H
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG-KNIH 59
Query: 221 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
+ V+ + G E R LE D + GG FDPL L+KDP
Sbjct: 60 INLVVAVVAEVVLVG----GAEYYRIINGLDLE--------DKLHHGGP-FDPLGLAKDP 106
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
F LKVKEIKNGRLAM + F+IQA TG+G
Sbjct: 107 DQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQG 140
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL Y G
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFG 167
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 92/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVK 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ G YLG P G+ +I+ A+ V + + E
Sbjct: 114 AQE-------WAATPGGQATYLGQPVPW--GTLPIILAIEFVAIAFVEHQRSMEKDTEKK 164
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
+ YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++G + Q A+
Sbjct: 165 K-----------YPGGA-FDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYP 212
Query: 312 GKG 314
G G
Sbjct: 213 GTG 215
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 97/198 (48%), Gaps = 48/198 (24%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
P W+ G S+ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKSE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKN- 162
Query: 253 EPLGIFLPGDIN----------------YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
PG +N YP G++F+PLN + E K KE+ NGRL
Sbjct: 163 -------PGSVNQDPIFKQYSLPQHECGYP-GSVFNPLNFAPT----LEAKEKELANGRL 210
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A+LGF +Q TGKG
Sbjct: 211 AMLAFLGFIVQHNVTGKG 228
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 43/237 (18%)
Query: 95 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
FD GL++DP + + E+++ RWAMLG G L+PEVL +G + P W+ G +
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL--IDAPQWYDAGKAT 126
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 259
+ A S + VI + +L E R+ I+ + IF
Sbjct: 127 --------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFKSYS 169
Query: 260 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T KG
Sbjct: 170 LPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQKG 221
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I++ A+ V E R +
Sbjct: 115 AQE-------WAAIPGGQATYLGQP--VPWGTLPTILVIEFLAIAFV--EHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++G + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYP 213
Query: 312 GKG 314
G G
Sbjct: 214 GTG 216
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 63 DRPLWFPGSAP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 120 ILIPECLERLGFIENFS--WYEAGSREYFADS-----------------TTLFVAQMVLM 160
Query: 239 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 161 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 220
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A++GF QA +T + I
Sbjct: 221 EIKNGRLAMLAFVGFCFQATYTSQDPI 247
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+I+A TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIKAYVTGQGPV 142
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGSLPGDYGFDPLGLS-DPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGK 128
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA---ICQALLMVGPEC 243
+G + W++ G G+ Y P ++ A Q G
Sbjct: 129 IGLIPQETAIPWFQTGVIPPLGQ-YSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 187
Query: 244 ARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 302
+Y G E + + GD YPGG LF+ L +D + ++LKVKE+KNGRLAM+A L
Sbjct: 188 KQYFLGFEKV----LGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVL 243
Query: 303 GFYIQAAFTGKG 314
G++IQA FTG G
Sbjct: 244 GYFIQAIFTGVG 255
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 98/198 (49%), Gaps = 31/198 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 73 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ 131
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
G VW+ G QG T DY P + I +M E R
Sbjct: 132 AGLIPESTGLVWFTSGAIPPQG-TFDYWANP----------MTIFWVNMCMMNFAEIKRG 180
Query: 246 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
Y G +A +PL G G+ YPGG F+ L KD +A +++ KEIKNGRL
Sbjct: 181 QDYWYPGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGKDDMA--KMQKKEIKNGRL 238
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A+LG +QA TG+G
Sbjct: 239 AMMAFLGCMVQAVVTGEG 256
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 239 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A+LGF QA +T + I
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPI 248
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 112/238 (47%), Gaps = 19/238 (7%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W+ SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAAAPPVKQGANRPLWVAS--SQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWR 200
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 201 VGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-CGIEALEPLG 256
G G D + L +A G Q G +Y G+E G
Sbjct: 137 TGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFLGLEK----G 191
Query: 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ TG G
Sbjct: 192 LAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 239 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A+LGF QA +T + I
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPI 248
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 104/204 (50%), Gaps = 34/204 (16%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PEVL G + P W+ G S+ + A S + V+ + +L
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDAGKSE--------------YFASSSTLFVV---EFILF 145
Query: 239 VGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
E R+ I+ ++ IF P + YP G++F+PLN + E K KE
Sbjct: 146 HYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-GSVFNPLNFAPT----LEAKEKE 200
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKG 314
+ NGRLAM+A+LGF IQ TGKG
Sbjct: 201 LANGRLAMLAFLGFLIQHNVTGKG 224
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 95/198 (47%), Gaps = 29/198 (14%)
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMV 188
YL G LPGD+GFD GL DP + E++H RWAMLG G L PEVL +
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 189 GAFHLV--EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
GA E VW+R G G+ Y + +A++M E R+
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYW----------TDAYTLFWVEAIMMNFAELKRW 171
Query: 247 CGIEALEPLG--IFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
++ G FL G+ YPGG F+ LNL K P A ++L+ EI+NGRL
Sbjct: 172 QDYQSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRL 231
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A LG + QA T KG
Sbjct: 232 AMIACLGCFGQAVMTTKG 249
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP LKVKEIKNGRLAM LGF+IQA TG+G +
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFGMLGFFIQAYVTGEGPV 142
>gi|302832608|ref|XP_002947868.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
gi|300266670|gb|EFJ50856.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
Length = 151
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 244 ARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
RY GI +LEP+G+FLPGD NYPGG FDPLN + D F + V+EIKNGRLAMVA LG
Sbjct: 51 GRYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLG 110
Query: 304 FYIQAAFTGKGMI 316
++QAA T KG +
Sbjct: 111 LFVQAAVTKKGPV 123
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 46/249 (18%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q+ + ++K++ + +Q N LW+ ++ SYL G LPGD+G
Sbjct: 28 QSPFVSSRKSSFVVRAASTPPVKQG-NRQLWFASKQSL----------SYLDGSLPGDFG 76
Query: 146 FDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP--- 196
FD GLS DP + EI++ R+AMLGA+GA+ PE+L G L+ P
Sbjct: 77 FDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG---LIPPETA 132
Query: 197 -VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
W+R G G T Y P + + + LM E R +
Sbjct: 133 LPWFRTGVIPPAG-TYSYWADP----------YTLFVFEMALMGFAEHRRLQDWAKPGSM 181
Query: 256 G--IFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
G FL G+ YPGG LF+PL KD + ++LK+KE+KNGRLAM+A LG++
Sbjct: 182 GKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 241
Query: 306 IQAAFTGKG 314
+Q TG G
Sbjct: 242 VQGLVTGVG 250
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 239 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 289
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 290 EIKNGRLAMVAWLGFYIQAAFTGKGMI 316
EIKNGRLAM+A+LGF QA +T + I
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPI 248
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP LKVKEIKNGRLAM LGF+IQA TG+G +
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFXMLGFFIQAYVTGEGPV 142
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
P W+ G S+ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKSE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+ IF P + YP G++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 164 GCVNQDPIFKQYSLPPHECGYP-GSVFNPLNFAPT----LEAKEKELANGRLAMLAFLGF 218
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 219 IVQHNVTGKG 228
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 97/190 (51%), Gaps = 29/190 (15%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GEL GDYG+D GL DP A + Y E+ HARWAMLG G LV E++ F+
Sbjct: 30 PEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIVKPDVYFY 89
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
G + E + + GL + +LM E R+ +
Sbjct: 90 -------EAGLPQNLPEPFTNINMGGL-----------LAWEFILMHWVEVRRWQDYKNF 131
Query: 253 -----EPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+P+ G +P ++ YPGG +FDP SK F+EL+ KEIKNGRLAM+A++ F
Sbjct: 132 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--DFKELQTKEIKNGRLAMIAYMAF 188
Query: 305 YIQAAFTGKG 314
+QA TGKG
Sbjct: 189 ILQAQATGKG 198
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
DP F LKVKEIKNGRLAM + F+IQA TG+
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQ 139
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 95/183 (51%), Gaps = 23/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL---GYGN 67
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V W + G YLG P G+ +I+ A+ V E R
Sbjct: 68 WVSAQKW----AATPGGQATYLGNP--VPWGNLPIILAVEFIAIAFV--ESQRN------ 113
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 311
G P YPGG FDPL SK EELK+KEIKNGRLA+VA+LGF +QA A+
Sbjct: 114 ---GESDPEKRKYPGGP-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFVVQAVAYP 168
Query: 312 GKG 314
G G
Sbjct: 169 GTG 171
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H WAML G LVPE L +
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVK 110
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E ++ + G YLG P G+ I+ A+ V E R G +
Sbjct: 111 AQE-------WAAVPGGQATYLGNPVPW--GTLPTILAIEFLAISFV--EHQRSMGKD-- 157
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
P YPGGA FDPL SKDP F E KVKE+KNGRLA++A++GF + Q+A+
Sbjct: 158 -------PEKKKYPGGA-FDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYP 209
Query: 312 GKG 314
G G
Sbjct: 210 GTG 212
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+IQA G+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVAGQGPV 142
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 105/218 (48%), Gaps = 39/218 (17%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARW 171
G +RP W SYL G LPGDYGFD GLS DP + E+++ R+
Sbjct: 52 GVDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRF 108
Query: 172 AMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
AMLGA+GA+ PE L VG W++ G G T +Y A + + V+
Sbjct: 109 AMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYW-------ADNYTLFVL 160
Query: 231 AICQALLMVGPECARY--------------CGIEALEPLGIFLPGDINYPGGALFDPLNL 276
+ LM E R+ G+E G G+ YPGG F+PL
Sbjct: 161 EMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GFGGSGNPAYPGGPFFNPLGF 213
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KD + +ELK+KE+KNGRLAM+A LG++IQ TG G
Sbjct: 214 GKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 251
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PG+YG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVG 202
LGALG + PE+L G + VW++ G
Sbjct: 108 LGALGCVFPELLARNGV-KFGKAVWFKAG 135
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 78/137 (56%), Gaps = 10/137 (7%)
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
GA PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L
Sbjct: 1 GASFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVL 57
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
M E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLA
Sbjct: 58 MGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLA 110
Query: 298 MVAWLGFYIQAAFTGKG 314
M + GF++QA TGKG
Sbjct: 111 MFSMFGFFVQAIVTGKG 127
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 122 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 162
Query: 237 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 287
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM+A++GF+ Q +TG+G
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQG 249
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 99/197 (50%), Gaps = 36/197 (18%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 67 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 123
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
+G+L+PE L GA++ + + G + GE + G +A+ L
Sbjct: 124 VGSLIPE-LQGQGAWYTLSEKQFGPGPN---GEVI--------------GFTELALIGML 165
Query: 237 LMVGPECARYCGIEALEPLGIF-LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
E R G G F GD YPG FDPL L+ E K EIKNGR
Sbjct: 166 FSYPLEYWRGNG-----GFGWFEEKGDRTYPG---FDPLQLTS-----EYTKTAEIKNGR 212
Query: 296 LAMVAWLGFYIQAAFTG 312
LAM A LGF +Q A TG
Sbjct: 213 LAMSALLGFAVQHATTG 229
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 84/183 (45%), Gaps = 43/183 (23%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 316
Query: 193 LVEPVWWRVGYS---KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
VW++ G S G +L P + G+ G G
Sbjct: 317 --RGVWFQAGESVDAAQLGLYFMFLAAPSEYWRGNGGF--------------------GW 354
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
+ E G+ YPG FDPL ++ D E K KEIKNGRLAM+A+LG QA
Sbjct: 355 DQKEKKA----GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQAN 402
Query: 310 FTG 312
TG
Sbjct: 403 TTG 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 8/52 (15%)
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
G+ YPG FDPL ++ D E K KEIKNGRLAM+A+LG QA TG
Sbjct: 1 GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTTG 44
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 100/190 (52%), Gaps = 33/190 (17%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
+ P W+ G + + A S + VI + + E R+ I+
Sbjct: 123 V--PKWYAAGKEE--------------YFASSSTLFVIEFILSHYV---EIRRWQDIKNP 163
Query: 251 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF LP G++ YPGG +F+PLN + E K KEI NGRL M+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRL-MLAFLGF 217
Query: 305 YIQAAFTGKG 314
IQ TGKG
Sbjct: 218 IIQHNVTGKG 227
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
PG FDPL L++DP E+ NGR AM+ G + FT G+I V
Sbjct: 71 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV 123
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 122 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 162
Query: 237 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 287
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM+A++GF+ Q +TG+G
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQG 249
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 11/108 (10%)
Query: 119 EERPRWLGP-----IPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 139
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 140 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+L G++ PG +DP LSK P F++ + E+ + R AM+ GF I AF G
Sbjct: 107 YLNGEV--PGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFG 161
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++ + Y E+
Sbjct: 16 ARQAPRAVRAQALTRPVWFPGNPA--PAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 227 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 277
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 278 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ D + E K KE+KNGRLAM+A LGF Q A TGKG
Sbjct: 177 RGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAATGKG 214
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 133 PSYLTGELPGDYGFD--VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
P+YLTGELPGD G+D G +D K E++H RWAML A+G L PE+ +G
Sbjct: 1339 PAYLTGELPGDVGWDPLQMGAQRD---LTKLRERELIHGRWAMLAAVGVLTPELTAKLGV 1395
Query: 191 FHLVEPVWWRVGYS-----KLQGETLDYLG---------IPGLHLAGSQGVIVIAICQAL 236
F WW + L G L YLG +P +HL V + + L
Sbjct: 1396 FGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFGLFWLPIIHLP------VFFVAEML 1449
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK--DPVAFEELKVKEIKNG 294
E R+ G++ + YPGG+LFDPL + + D + LK EI +
Sbjct: 1450 RTGKYEVERFRGLDRM------------YPGGSLFDPLGIGRDIDETELKVLKTIEINHC 1497
Query: 295 RLAMVAWLGFYIQAAFTGKG 314
RLAM A GF ++AA G G
Sbjct: 1498 RLAMTASFGFIVEAALWGAG 1517
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 118/241 (48%), Gaps = 38/241 (15%)
Query: 81 LGELLQ-NRMLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSY 135
+ +++Q + L +K A++ ++ KA A+ + N +W+ PR ++
Sbjct: 2 VSQMIQASTFLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AW 51
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
L G LPGD+G+D GLS DP + E+ +ARWAMLG G L ++ + VG L
Sbjct: 52 LDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVG---LPA 108
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC--GIEALE 253
V W + +DY A + ++V+ + + G A + G +
Sbjct: 109 AVQW------YEAPLVDY-------QADWKTLLVVQLVLHAWVEGRRWADFHSPGSANAD 155
Query: 254 PLGIFLP--GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
P G LP YPGG FDPL SK ELK+KEIKNGRLAMVA LG ++Q + T
Sbjct: 156 PFGNSLPSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSAT 212
Query: 312 G 312
G
Sbjct: 213 G 213
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 62 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 118
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 119 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 159
Query: 237 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 287
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 160 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 219
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
KEIKNGRLAM+A++GF+ Q +TG+G
Sbjct: 220 TKEIKNGRLAMLAFVGFWFQVVYTGQG 246
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 94/175 (53%), Gaps = 22/175 (12%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGD+GFD GL + P ++Y E++H RWAML G LVPE L G + V+ W
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGNWVKAQEW- 58
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLP 260
+ L G YLG P + ++AI + L + E R + P
Sbjct: 59 ---AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD---------P 102
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFTGKG 314
YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+ G G
Sbjct: 103 EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 156
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 138/297 (46%), Gaps = 47/297 (15%)
Query: 37 PSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFT-AVKAIANSPLGELLQNRMLETKKA 95
P N+L +SL + +A ++ S+ T A +A+ S L + + ++K
Sbjct: 265 PVNNNIL----TSLKGNKEGKNMATQVLLSSSSLTFAAEAVRQSFGARSLPSSIGSSRKG 320
Query: 96 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
+ + + + N LW+ ++ SYL G LPGD+GFD GLS DP
Sbjct: 321 SFVVKAA-APVKKGGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DP 368
Query: 156 MAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQG 208
+ EI++ R+AMLGA GA+ PE+L G + W++ G G
Sbjct: 369 EGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG 428
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGI 257
T +Y A + + V+ + Q G +Y G+E G+
Sbjct: 429 -TYNYW-------ADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLEK----GL 476
Query: 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G+ YPGG +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG G
Sbjct: 477 GGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVG 533
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN-- 163
+ + N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 50 VKQNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPR 98
Query: 164 ----FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPG 218
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW---- 153
Query: 219 LHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPG 267
A + + V+ + Q G +Y G+E G+ G+ YPG
Sbjct: 154 ---ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPG 206
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG G
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVG 253
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 99/211 (46%), Gaps = 41/211 (19%)
Query: 121 RPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
RP + G P P +L G +PGDYGFD GL +D A Y E++HARWAMLG G
Sbjct: 41 RPNYFPGSTP---PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGM 97
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP--GLHLAGSQGVIVIAICQALL 237
PE+ G + G ++ P ++A + + V+ Q L
Sbjct: 98 AAPEIF----------------GNPLVDGPLPNWADAPFYDGYIADANTLFVV---QMFL 138
Query: 238 MVGPECARYCGI------------EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 285
M E R+ + E+ + G D+ YPGG LF+P+ ++K +
Sbjct: 139 MNWAEVRRWQDMKNPGSVHADPYDESRKCTGT----DVGYPGGGLFNPMGMAKSAEEEKT 194
Query: 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
L+ KEI NGRLAMVA +G +IQ TG G +
Sbjct: 195 LRTKEIANGRLAMVAAMGCFIQHDVTGTGPV 225
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 112/254 (44%), Gaps = 52/254 (20%)
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
+ + I + + ++IA L R T+ + + S++ ++ Q EER
Sbjct: 103 LITTILYKSKQSIA---LAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGSAPEEERLV 159
Query: 124 WL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
W P P +LTGE PGD GFD GLSKDP+ F++ E+ H R AMLG +G +VP
Sbjct: 160 WFPNATP---PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVP 216
Query: 183 EVLDMVGA-FHLVEPVWWRVGYSKLQG-ETLDY-LGIPGLHLAGSQGVIVIAICQALLMV 239
E+ G F L R+G LQ L+Y G G G G
Sbjct: 217 ELFFSQGPWFDLSSFNLTRLGLVALQVIAPLEYWRGNRGFSWNGDDGP------------ 264
Query: 240 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299
D +YPG FDPL L+ EE K+KEIKNGRLAM
Sbjct: 265 ----------------------DQSYPG---FDPLRLTD-----EETKLKEIKNGRLAMT 294
Query: 300 AWLGFYIQAAFTGK 313
A LG +Q+ TGK
Sbjct: 295 AMLGLEVQSHITGK 308
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 91/203 (44%), Gaps = 51/203 (25%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LVPE+L F +W +V +++ AL +
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRFA-------------------------VVALQV 804
Query: 239 VGPECARYCGIEALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
V P +E G FL D +YPG FDPLNL+ E K EIKN
Sbjct: 805 VAP-------LEYWRGNGGFLWNDEETIDQSYPG---FDPLNLTT-----EYTKEAEIKN 849
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM+ G +Q+ TGK I
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPI 872
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 94/196 (47%), Gaps = 49/196 (25%)
Query: 119 EERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+ERP W P PS+LTGE GD GFD AGL+ DP F++ E+ H R AML +
Sbjct: 347 DERPLWF---PNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIV 403
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
GALVP+ +L + +W+ E GI G+ +AI A
Sbjct: 404 GALVPD--------YLGKGIWY---------EAAQNAGI---------GLKEVAIFTAAY 437
Query: 238 MVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
V E AR G+ E +P I YPG FDPLNL+ D K EIKNGRL
Sbjct: 438 GVF-EVAR--GVKENSDPTTI-------YPG---FDPLNLTTD-----YTKEAEIKNGRL 479
Query: 297 AMVAWLGFYIQAAFTG 312
A+ A LGF +Q G
Sbjct: 480 ALTALLGFEVQRHVVG 495
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 97/245 (39%), Gaps = 61/245 (24%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ P
Sbjct: 494 VGGSPLANLADHLQQPLQHNIADSIMHQWPVAMFASSGHKDGLWFPNAEP---------- 543
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLG------ 597
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
+ W+ G S + GL L G I +AI E
Sbjct: 598 --KGAWFEAGDS-----------VDGLKL----GFITMAIAAP-------------TEYW 627
Query: 253 EPLGIF--LPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 308
G F GD++ YPG FDPLNL+ D + E+KNGRLA+ A G Q
Sbjct: 628 RGQGGFNWQKGDLDRSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQY 679
Query: 309 AFTGK 313
TG+
Sbjct: 680 LATGE 684
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 87/212 (41%), Gaps = 58/212 (27%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 951 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 987
Query: 226 GVIVIAICQALLMVGPECARYCGIEALEPLGIF--LPGDIN--YPGGALFDPLNLSKDPV 281
G I +AI E G F GD++ YPG FDPLNL+ D
Sbjct: 988 GFITMAIAAP-------------TEYWRGQGGFNWQKGDLDRSYPG---FDPLNLTTD-- 1029
Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
+ E+KNGRLA+ A G Q TG+
Sbjct: 1030 ---YTRAAEVKNGRLALTAVAGLTAQYLATGE 1058
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+PG FDPL LSKDPV FE +++ E+ +GRLAM+ +G + F +G
Sbjct: 174 FPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQG 223
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320
Y G FDP L+ DP FE +++ E+ +GRLAM+A +G + + GKG+ AA
Sbjct: 366 YYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALV-PDYLGKGIWYEAA 420
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 118 GEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
G+E +W GP +P + P YL GE+PGDYG+D GLSK P F KY +E+
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 98/197 (49%), Gaps = 36/197 (18%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 67 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 123
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
+G+L+PE L GA++ + + G GE + G +A+ L
Sbjct: 124 VGSLIPE-LQGQGAWYTLSEKQFGPG---PNGEVI--------------GFTELALIGML 165
Query: 237 LMVGPECARYCGIEALEPLGIF-LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
E R G G F GD YPG FDPL L+ E K EIKNGR
Sbjct: 166 FSYPLEYWRGNGG-----FGWFEEKGDRTYPG---FDPLQLTS-----EYTKTAEIKNGR 212
Query: 296 LAMVAWLGFYIQAAFTG 312
LAM A LGF +Q A TG
Sbjct: 213 LAMSALLGFAVQHATTG 229
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 98/197 (49%), Gaps = 36/197 (18%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 429 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 485
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
+G+L+PE L GA++ + + G GE + G +A+ L
Sbjct: 486 VGSLIPE-LQGQGAWYTLSEKQFGPG---PNGEVI--------------GFTELALIGML 527
Query: 237 LMVGPECARYCGIEALEPLGIF-LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
E R G G F GD YPG FDPL L+ E K EIKNGR
Sbjct: 528 FSYPLEYWRGNGG-----FGWFEEKGDRTYPG---FDPLQLTS-----EYTKTAEIKNGR 574
Query: 296 LAMVAWLGFYIQAAFTG 312
LAM A LGF +Q A TG
Sbjct: 575 LAMSALLGFAVQHATTG 591
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 83/183 (45%), Gaps = 42/183 (22%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 316
Query: 193 LVEPVWWRVGYS---KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
VW++ G S G +L P + G+ G Q G
Sbjct: 317 --RGVWFQAGESVDAAQLGLYFMFLAAPSEYWRGNGG---FGWDQKEKKAG--------- 362
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
G+ YPG FDPL ++ D E K KEIKNGRLAM+A+LG QA
Sbjct: 363 -----------GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQAN 403
Query: 310 FTG 312
TG
Sbjct: 404 TTG 406
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 84/183 (45%), Gaps = 43/183 (23%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 625 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 678
Query: 193 LVEPVWWRVGYS---KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI 249
VW++ G S G +L P + G+ G G
Sbjct: 679 --RGVWFQAGESVDAAQLGLYFMFLAAPSEYWRGNGGF--------------------GW 716
Query: 250 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309
+ E G+ YPG FDPL ++ D E K KEIKNGRLAM+A+LG QA
Sbjct: 717 DQKEKKA----GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQAN 764
Query: 310 FTG 312
TG
Sbjct: 765 TTG 767
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 8/52 (15%)
Query: 261 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
G+ YPG FDPL ++ D E K KEIKNGRLAM+A+LG QA TG
Sbjct: 1 GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTTG 44
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P L +Q ++ I Q L
Sbjct: 1 LGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWATQVL 57
Query: 237 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRL
Sbjct: 58 LMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRL 110
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM++ GF++QA TGKG
Sbjct: 111 AMLSMFGFFVQAIVTGKG 128
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 87 NRMLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
+ L +K A++ ++ KA A+ + N +W+ PR ++L G LPG
Sbjct: 5 STFLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AWLDGSLPG 54
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
D+G+D GLS DP + E+ +ARWAMLG G L ++ + VG L V W
Sbjct: 55 DFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVG---LPAAVQW--- 108
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC--GIEALEPLGIFLP 260
+ +DY A + ++V+ + + G A + G +P G LP
Sbjct: 109 ---YEAPLVDY-------QADWKTLLVVQLVLHAWVEGRRWADFHSPGSANADPFGNSLP 158
Query: 261 --GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
YPGG FDPL SK ELK+KEIKNGRLAMVA LG ++Q + TG
Sbjct: 159 STATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATG 209
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 36 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 95
Query: 174 LGALGALVPEVLDMVG 189
LGALG + PE+L G
Sbjct: 96 LGALGCVFPELLARNG 111
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 97/198 (48%), Gaps = 31/198 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PEVL
Sbjct: 96 TYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGG 154
Query: 188 VGAFHL-VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G VW++ G QG T DY P I +LM E R
Sbjct: 155 MGIIPADTGLVWFKSGAIPPQG-TFDYWADP----------TTIFWVNMVLMNFAEVKRG 203
Query: 246 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
Y G + PL G G YPGG F+ NL K +A +++ KEIKNGRL
Sbjct: 204 QDYWYPGSQGETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKTDMA--KMQKKEIKNGRL 261
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A+LG +QA TG+G
Sbjct: 262 AMMAFLGIAVQAVATGEG 279
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 106/231 (45%), Gaps = 29/231 (12%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L+T+ A +S+ + +WY + P ++L G LPGDYGFD
Sbjct: 13 LKTRVATKTRASRGPVAVSANADRPVWYPGKAPA----------AHLDGSLPGDYGFDPL 62
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
LS DP Q E+ HARWAMLG G + PE+L +G L P W +
Sbjct: 63 SLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADL--PNW-------VDAA 113
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN----Y 265
T Y PG G+ I +A+ + + + G +PL + D N Y
Sbjct: 114 TYQYWA-PG----GTLFFIQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSNDTNTDVGY 168
Query: 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P G LFD +KD ELK+KEIKNGRLAM+A+LG Q TG G +
Sbjct: 169 PKG-LFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPV 218
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 94/174 (54%), Gaps = 22/174 (12%)
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GD+GFD GL + P ++Y E++H RWAML G LVPE L G + V+ W
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GFGNWVKAQEW-- 55
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
+ + G YLG P G+ I++ A+ V E R + P
Sbjct: 56 --AAVPGGQATYLGNP--VPWGTLPTILVIEFLAIAFV--EHQRSMEKD---------PE 100
Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFTGKG 314
YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+ G G
Sbjct: 101 KRKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 153
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 105/197 (53%), Gaps = 27/197 (13%)
Query: 134 SYLTGELPGDYGFDVAGLSK--------DP--MAFQKYFNFEILHARWAMLGALGALVPE 183
SYL G PGD+G+D GL K DP +A+ E++H R+AMLG G + PE
Sbjct: 87 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS-----EVIHCRYAMLGMAGMVAPE 141
Query: 184 VLDMVGAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV----IAICQALLM 238
+L +G VW++ G +G+ DY P L L + V++ + Q
Sbjct: 142 ILGKLGLIPAETGLVWFKTGVIPSEGQ-YDYWASP-LALFWIEVVLMQFAELRRWQDYRH 199
Query: 239 VGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
G + +Y G+E GD +YPGGA+F+ L KD + +LK+KE+KNGRLA
Sbjct: 200 PGSQSKQYFLGLEQF----FGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLA 255
Query: 298 MVAWLGFYIQAAFTGKG 314
MVA LGF+IQA TG+G
Sbjct: 256 MVATLGFFIQAMATGEG 272
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 91/183 (49%), Gaps = 26/183 (14%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
+ P+W + G + GI V ALL + +
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 139
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
A E PGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 140 AAEGQRRRC-RRRRLPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 311 TGK 313
TGK
Sbjct: 198 TGK 200
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 103/204 (50%), Gaps = 34/204 (16%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PEVL G + P W+ S+ + A S + V+ + +L
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDASKSE--------------YFASSSTLFVV---EFILF 145
Query: 239 VGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
E R+ I+ ++ IF P + YP G++F+PLN + E K KE
Sbjct: 146 HYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-GSVFNPLNFAPT----LEAKEKE 200
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKG 314
+ NGRLAM+A+LGF IQ TGKG
Sbjct: 201 LANGRLAMLAFLGFLIQHNVTGKG 224
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 102/199 (51%), Gaps = 31/199 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGD+GFD GLS DP + EI++ R+AMLGA GA+ PE+L
Sbjct: 364 SYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGK 422
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC----------QAL 236
G + W++ G G T +Y A + + V+ + Q
Sbjct: 423 AGLIPAETALPWFQTGVIPPAG-TYNYW-------ADNYTLFVMEMAFMGFAEHRRLQDW 474
Query: 237 LMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
G +Y G+E G+ G+ YPGG +F+PL KD + +ELK+KE+KNGR
Sbjct: 475 YNPGSMGKQYFLGLEK----GLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 530
Query: 296 LAMVAWLGFYIQAAFTGKG 314
LAM+A LG++IQA TG G
Sbjct: 531 LAMLAILGYFIQALVTGVG 549
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN-- 163
+ + N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 50 VKQNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPR 98
Query: 164 ----FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPG 218
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW---- 153
Query: 219 LHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPG 267
A + + V+ + Q G +Y G+E G+ G+ YPG
Sbjct: 154 ---ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPG 206
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG G
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVG 253
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN-- 163
+ + N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 50 VKQNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPR 98
Query: 164 ----FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPG 218
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW---- 153
Query: 219 LHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPG 267
A + + V+ + Q G +Y G+E G+ G+ YPG
Sbjct: 154 ---ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPG 206
Query: 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG G
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVG 253
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 114/251 (45%), Gaps = 46/251 (18%)
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
+ + I + + ++IA L R T+ + + S++ ++ Q EER
Sbjct: 103 LITTILYKSKQSIA---LAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGNAPEEERLV 159
Query: 124 WL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
W P P +LTGE PGD GFD GLS DP+ F++ E+ H R AMLG +G +VP
Sbjct: 160 WFPNATP---PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVP 216
Query: 183 EVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPE 242
E+ G W+ L G L LG+ L VIA +
Sbjct: 217 ELFFSQGP-------WF-----DLSGFNLTRLGLVALQ--------VIAPLE-------- 248
Query: 243 CARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 302
+ G G P D +YPG FDPL L+ D E K+KEIKNGRLAM A L
Sbjct: 249 --YWRGNRGFSWNGDDGP-DQSYPG---FDPLRLTDD-----ETKLKEIKNGRLAMTAML 297
Query: 303 GFYIQAAFTGK 313
G +Q+ TGK
Sbjct: 298 GLEVQSHITGK 308
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 91/203 (44%), Gaps = 51/203 (25%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LVPE+L F +W +V +++ AL +
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRFA-------------------------VVALQV 804
Query: 239 VGPECARYCGIEALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
V P +E G FL D +YPG FDPLNL+ E K EIKN
Sbjct: 805 VAP-------LEYWRGNGGFLWNDEETVDQSYPG---FDPLNLTT-----EYTKEAEIKN 849
Query: 294 GRLAMVAWLGFYIQAAFTGKGMI 316
GRLAM+ G +Q+ TGK I
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPI 872
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 99/212 (46%), Gaps = 54/212 (25%)
Query: 103 FKALARQARNESLWYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
F A R+++ +ERP W P PS+L GE GD GFD AGL+ DP F++
Sbjct: 336 FAASGRKSQKS-----DERPLWF---PNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERM 387
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E+ H R AML +GALVP+ +L + +W+ E GI
Sbjct: 388 RIAEVYHGRLAMLAVVGALVPD--------YLGKGIWY---------EAAQNAGI----- 425
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDP 280
G+ +AI A V E AR G+ E +P I YPG FDPLNL+ D
Sbjct: 426 ----GLKEVAIFTAAYGVF-EVAR--GVKENSDPTTI-------YPG---FDPLNLTTD- 467
Query: 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
K EIKNGRLA+ A LGF +Q G
Sbjct: 468 ----YTKEAEIKNGRLALTALLGFEVQRHVVG 495
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 97/241 (40%), Gaps = 53/241 (21%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ P
Sbjct: 494 VGGSPLANLAEHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPNAEP---------- 543
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLG------ 597
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
+ W+ G S + GL L G I +AI E R G
Sbjct: 598 --KGAWFEAGDS-----------VDGLKL----GFITMAIAAPT-----EYWRGQGGFNW 635
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
+ + D +YPG FDPLNL+ D + E+KNGRLA+ A G Q TG
Sbjct: 636 QKGEL----DRSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATG 683
Query: 313 K 313
+
Sbjct: 684 E 684
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 71/174 (40%), Gaps = 45/174 (25%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 951 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 987
Query: 226 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279
G I +AI E R G + + D +YPG FDPLNL+ D
Sbjct: 988 GFITMAIAAPT-----EYWRGQGGFNWQKGEL----DRSYPG---FDPLNLTTD 1029
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+PG FDPL LS DPV FE +++ E+ +GRLAM+ +G + F +G
Sbjct: 174 FPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQG 223
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320
Y G FDP L+ DP FE +++ E+ +GRLAM+A +G + + GKG+ AA
Sbjct: 366 YYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALV-PDYLGKGIWYEAA 420
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
YP FDPLNL+ DP + ++V E+ +GRLAM+ +G
Sbjct: 925 YPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG 963
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 25/196 (12%)
Query: 134 SYLTGELPGDYGFDVAGLSK--------DPMAFQKYFNF-EILHARWAMLGALGALVPEV 184
SYL G PGD+G+D GL K DP K+ + E++H R+AMLG G + PE+
Sbjct: 65 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDP----KWLAYSEVIHCRYAMLGMAGMVAPEI 120
Query: 185 LDMVGAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV----IAICQALLMV 239
L +G VW++ G +G+ DY P L L + V++ + Q
Sbjct: 121 LGKLGLIPAETGLVWFKTGVIPSEGQ-YDYWASP-LALFWIEVVLMQFAELRRWQDYRHP 178
Query: 240 GPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
G + +Y G+E GD +YPGGA+F+ L KD + +LK+KE+KNGRLAM
Sbjct: 179 GSQSKQYFLGLEQF----FGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAM 234
Query: 299 VAWLGFYIQAAFTGKG 314
VA LGF+IQA TG+G
Sbjct: 235 VATLGFFIQAMATGEG 250
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 11/117 (9%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNE-SLWYGEERPRWLGP 127
P A KA+ SP E+L + +K A + A+ A + S WYG +R ++LGP
Sbjct: 13 PAFAGKAVKLSP--EVLTTGGITMRKTAGK--------AKPAVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 112/248 (45%), Gaps = 39/248 (15%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ TK A K + + + G RP W +YL G LPGDYGFD
Sbjct: 20 QIFGTKPAVSTSRRKSSFVVKATSTPPVKQGANRPLWFASS--QSLTYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWR 200
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQ 136
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------Y 246
G G T Y A + + V+ + LM E R +
Sbjct: 137 TGVIPPAG-TYSYW-------ADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQYF 185
Query: 247 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
G+E G G+ YPGG F+PL K+ + +ELK+KEIKNGRLAM+A LG+++
Sbjct: 186 LGLEK----GFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFV 241
Query: 307 QAAFTGKG 314
Q TG G
Sbjct: 242 QGLVTGVG 249
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 218
Y FE++HARWAMLGA G ++PE + GA E VW++ L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIP- 59
Query: 219 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 279 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
DP F LKVKEIKNGRLAM + F+I+A TG+G +
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIKAYVTGQGPV 142
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 33/196 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G + GDYGFD GL +D +A Q Y E++HARWAMLG G PE+
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPEL-------- 103
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGL--HLAGSQGVIVIAICQALLMVGPECARYCGIE 250
VG + G ++ P ++A + + V+ Q M E R+ ++
Sbjct: 104 --------VGNPFVDGPLPNWAEAPFFDGYIADANTLFVV---QMFFMNWAEVRRWQDMK 152
Query: 251 ALEPLGIFLP----------GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300
P + D+ YPGG LF+P+ ++K + L+ KEI NGRLAMVA
Sbjct: 153 --NPGSVHADPYDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVA 210
Query: 301 WLGFYIQAAFTGKGMI 316
+G +IQ TG G +
Sbjct: 211 AMGCFIQHDVTGTGPV 226
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G+L GDYG+D GL DP A + Y E+ HARWAMLG G LV E++ F+
Sbjct: 42 PEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIVKPDVYFY 101
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
G + E + + GL + +LM E R+ +
Sbjct: 102 -------EAGLPQNLPEPFTNINMGGL-----------LAWEFILMHWVEVRRWQDYKNF 143
Query: 253 -----EPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+P+ G +P ++ YPGG +FDP SK +EL+ KEIKNGRLAM+A++ F
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--NLKELQTKEIKNGRLAMIAYMAF 200
Query: 305 YIQAAFTGKG 314
+QA TGKG
Sbjct: 201 ILQAQATGKG 210
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 73/125 (58%), Gaps = 15/125 (12%)
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EA 251
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E
Sbjct: 5 EAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEG 62
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
L+PL YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 63 LDPL---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 112
Query: 312 GKGMI 316
GKG I
Sbjct: 113 GKGPI 117
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 113/249 (45%), Gaps = 41/249 (16%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS--SQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAF---------- 191
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPXXQ 136
Query: 192 -HLVEP----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
++ P +W Y TL L + + A + + Q G +Y
Sbjct: 137 TGVIPPAGTYTYWADNY------TLFVLEMALMGFAEHRRL------QDWYNPGSMGKQY 184
Query: 247 -CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 305
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++
Sbjct: 185 FLGLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Query: 306 IQAAFTGKG 314
IQ TG G
Sbjct: 241 IQGLVTGVG 249
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 110/244 (45%), Gaps = 49/244 (20%)
Query: 91 ETKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
T AAL+ S+ K+ LAR E + WL +P P+YL G LP
Sbjct: 7 RTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+
Sbjct: 65 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDA 122
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIF 258
G + + A S + VI + +L E R+ I+ + IF
Sbjct: 123 GKAT--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIF 165
Query: 259 L-----PGDINYPGGALFDPLNLSKDPVAFE---ELKVKEIKNGRLAMVAWLGFYIQAAF 310
P + YP S P+ FE E K KE+ NGRLAM+A+LGF +Q
Sbjct: 166 KSYSLPPHECGYPAA--------SSTPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 311 TGKG 314
T KG
Sbjct: 218 TQKG 221
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
DYG+D AGLS DP F K E++H+RWAMLGALG +
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD GL DP+ + E++H RWAMLGA G + PE+L
Sbjct: 56 AYLDGTLPGDFGFDPLGL-LDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGA 114
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 246
G VW+ G G Y P I I Q + + RY
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIF-----FIEIVAMQFAELRRLQDFRY 169
Query: 247 CGIEALEPL----GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 301
G + IF GD YPGG F+ NL K A +ELK+KEIKNGRLAM+A
Sbjct: 170 PGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 229
Query: 302 LGFYIQAAFTGKG 314
LG+ QA T +G
Sbjct: 230 LGYGAQATLTREG 242
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVL 185
LGALG + PE+L
Sbjct: 108 LGALGCVFPELL 119
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
P L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 116 PELLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 157
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P+YL LP YGFD GL+K+ + Q++ E++H RWAMLGA G L EVL
Sbjct: 36 DTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGVEVLGYGN- 93
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 250
W+ +QG + Y G G+ I A M G E R
Sbjct: 94 -------WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAA-----MAGAESFR----- 136
Query: 251 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 310
G P YPGG FDP +SK +EL+ KEIKNGRLAM+A LGF Q A
Sbjct: 137 -----GAAEPEKRVYPGGP-FDPAGMSKGNQ--DELRTKEIKNGRLAMIACLGFVAQHAA 188
Query: 311 TG 312
TG
Sbjct: 189 TG 190
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WY +RP++L P SYLTGE PGDYG+D AGLS D F + E++H+ WA
Sbjct: 41 QSIWYDPDRPKYLAPFSEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWWA 100
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL 214
MLGALG + PEVL E VW++ G LDYL
Sbjct: 101 MLGALGCVFPEVL-AKNDVKFGEVVWFKAGAQIFSEGGLDYL 141
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 254
E VW++ G LDYLG P L +Q ++ I CQ +LM E R G P
Sbjct: 15 EAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAG----GP 68
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 69 LGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 125
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 92/193 (47%), Gaps = 30/193 (15%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L ELPGDYGFD L KDP + Y E+ H RWAMLG GA PE+L +G +
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--- 249
L P W E Y G + Q L+M E R+ I
Sbjct: 69 L--PNW---------HEAPSYDGY-------FTDATTLFWVQMLMMNWAEVRRWQDIRKP 110
Query: 250 ----EALEPL-GIFLP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
E P LP G + YPGG +FDPL +K + + LK KEI NGRLAMVA+ G
Sbjct: 111 GSVSEDPTPFSNAKLPAGVVGYPGG-IFDPLGYAKGDL--KTLKAKEIANGRLAMVAFAG 167
Query: 304 FYIQAAFTGKGMI 316
+Q TG G +
Sbjct: 168 IMVQYDHTGVGPV 180
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV--IAICQALLMVGPECARYCG 248
W G + +Y P L G Q ++ + I + V P A
Sbjct: 126 ------SWPGAGVAWYDAGKFEYFA-PASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDP 178
Query: 249 IEALEPLGIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
I L D N PG G +FDP SK + + LK+KEIKNGRLAM+A+ GF
Sbjct: 179 IFTNNKL-----PDGNEPGYPGGIFDPFGWSKGDI--KSLKLKEIKNGRLAMLAFAGFIG 231
Query: 307 QAAFTG 312
QA TG
Sbjct: 232 QAYTTG 237
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 108/250 (43%), Gaps = 38/250 (15%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP---------SY 135
+QN SS L R+ R + G+E P+P D P ++
Sbjct: 20 VQNPTQRRPHVVASTSSTGGRLMRE-RLVVVRAGKEVSSVCEPLPPDRPYGSLVALHLNW 78
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
L G LPGD+GFD GL DP + + E++H+RWAML G ++PE L+ +G
Sbjct: 79 LDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFS 138
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-------- 247
W+ G + ++ + + Q +LM E R+
Sbjct: 139 --WYDAGSREYFADS-----------------TTLFVAQMVLMGWAEGRRWADLIKPGSV 179
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYI 306
IE P + D YPGG FD + + P L+ KEIKNGRLAM+A+LGF
Sbjct: 180 DIEPKYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 239
Query: 307 QAAFTGKGMI 316
QA +T + I
Sbjct: 240 QATYTSQDPI 249
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 109/242 (45%), Gaps = 32/242 (13%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYG---EERPRWLGPIPYDYPS-YLTGELPGDY 144
+L +K A + F AR AR ++ + +R W P + P+ +L G LPGD+
Sbjct: 10 LLGSKSAVAARPAAFSGKARTARVQARFVAVSAADRQVWF---PGNAPAPHLDGSLPGDF 66
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
GFD L DP + + E++H R AM G L P V G ++ P W+ G
Sbjct: 67 GFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNI--PQWYDAGSV 124
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE--ALEPLGIFL--- 259
+Q P A + Q +L E R+ + + G FL
Sbjct: 125 WVQNN-------PNFPFA------ALLFIQIILTGWVETKRWLDFKNPGSQADGSFLGVT 171
Query: 260 ---PGDIN-YPGGALFDPLNLSKDPVA-FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
G N YPGG LFDP LS+ ++ + EIKNGRLAMVA+LGF Q A TGKG
Sbjct: 172 DDFKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAATGKG 231
Query: 315 MI 316
I
Sbjct: 232 PI 233
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 98/198 (49%), Gaps = 30/198 (15%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + N E++H RWAMLG GA PE +
Sbjct: 76 SYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETMK- 133
Query: 188 VGAF--HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 245
F VW++ G QG + D+ P + + +C +
Sbjct: 134 --GFIPDSTAVVWFKNGIIPAQG-SYDFWAPP-------TALFWVMVCMMNFVEINRLTE 183
Query: 246 YC--GIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
Y G + L G+ G+ YPGG+ F+P+ + K+ + + +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMGKNDM--DAMKVKEIKNGRLAM 240
Query: 299 VAWLGFYIQAAFTGKGMI 316
+A+ G +QA TG+G +
Sbjct: 241 MAFFGIMVQAIITGEGPV 258
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 72/123 (58%), Gaps = 15/123 (12%)
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EALE 253
VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E L+
Sbjct: 2 VWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 59
Query: 254 PLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313
PL YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGK
Sbjct: 60 PL---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGK 109
Query: 314 GMI 316
G I
Sbjct: 110 GPI 112
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV--IAICQALLMVGPECARYCG 248
W G + +Y P L G Q ++ + I + V P A
Sbjct: 126 ------SWPGAGVAWYDAGKFEYFA-PASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDP 178
Query: 249 IEALEPLGIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
I L D N PG G +FDP SK + + LK+KEIKNGRLAM+A+ GF
Sbjct: 179 IFTNNKL-----PDGNEPGYPGGIFDPFGWSKGDI--KSLKLKEIKNGRLAMLAFAGFIG 231
Query: 307 QAAFTG 312
QA TG
Sbjct: 232 QAYTTG 237
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 52 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF 111
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV--IAICQALLMVGPECARYCG 248
W G + +Y P L G Q ++ + I + V P A
Sbjct: 112 ------SWPGAGVAWYDAGKFEYFA-PASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDP 164
Query: 249 IEALEPLGIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306
I L D N PG G +FDP SK + + LK+KEIKNGRLAM+A+ GF
Sbjct: 165 IFTNNKL-----PDGNEPGYPGGIFDPFGWSKGDI--KSLKLKEIKNGRLAMLAFAGFIG 217
Query: 307 QAAFTG 312
QA TG
Sbjct: 218 QAYTTG 223
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
+ PE+L G EPVW++ G Q L+YLG P L A Q ++ Q +LM
Sbjct: 1 VTPELLAANGV-SFGEPVWFKAGAQIFQDGGLNYLGNPSLIHA--QNIVATLAVQVILMG 57
Query: 240 GPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
E R G E L+PL YPG A FDPL L+ DP F ELKVKEIKNGRL
Sbjct: 58 LVEGYRMNGGPAGEGLDPL---------YPGEA-FDPLGLADDPDTFAELKVKEIKNGRL 107
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM + GF++QA TGKG I
Sbjct: 108 AMFSCFGFFVQAIVTGKGPI 127
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 14/199 (7%)
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P D PS L G++GFD GL KDP+A Y E++H R AM G G L+P +L
Sbjct: 31 PAHLDTPS--AQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAMTGVAGILIPGLLT 88
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP--ECA 244
GA ++ P W+ G ++ + + + L G + + Q + G E
Sbjct: 89 KAGALNV--PEWYDAGKVAIENSFAPWGTLLAVQLFLC-GFVEVKRWQDIRKPGSQGEPG 145
Query: 245 RYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
+ G E+ + ++ YPGG FDPL LSK+ + + K+KE+KNGRLAM+A+LGF
Sbjct: 146 SFLGFES----SLKGTSEVGYPGGP-FDPLGLSKEADKWADWKLKEVKNGRLAMLAFLGF 200
Query: 305 YIQAAFTGKGMI--LVAAL 321
Q TG G + LVA L
Sbjct: 201 VAQKYATGAGPVDNLVAHL 219
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER W P P++L G LPGD+G+D GL+KDP++ +Y E+++ RWAMLG G
Sbjct: 37 ERKLW-APGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGM 95
Query: 180 LVPEVLDMVGAFHLVEPVWWRV--GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
L PE +VG + W V G G L Y G + +
Sbjct: 96 LAPE---LVGQGTWLSAQDWAVTGGKPTYLGNELPY------------GFGTVLAVEFFC 140
Query: 238 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
+ E +R G+E +P+ YPGGA FDPL KD V KVKE++NGRLA
Sbjct: 141 LSWVEISR--GLEK-DPMKRI------YPGGA-FDPLGFGKDEVN----KVKELRNGRLA 186
Query: 298 MVAWLGFYIQAAFTGKGMI 316
MVA++G + Q G G +
Sbjct: 187 MVAFVGMWCQGIHVGGGPV 205
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Query: 121 RPRWL--GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
R WL IP + L G++GFD GL KDP+A + Y E++H R AM G G
Sbjct: 27 RQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAMAGVAG 86
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+P +L GA ++ P W+ G ++ + + + L G + Q +
Sbjct: 87 ILIPGLLTKAGALNV--PEWYDAGKVAIENSFAPWGSLLAVQLFLC-GFVEAKRWQDIRK 143
Query: 239 VGP--ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
G E + G EA + ++ YPGG FDPL LSK+ + + K+KE+KNGRL
Sbjct: 144 PGSQGEPGSFLGFEA----SLKGTSELGYPGGP-FDPLGLSKEADKWADWKLKEVKNGRL 198
Query: 297 AMVAWLGFYIQAAFTGKGMI 316
AM+A+LGF Q TG G +
Sbjct: 199 AMLAFLGFVAQKYATGAGPV 218
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 15 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 73
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G + W++ G G Y P + + + LM E R
Sbjct: 74 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 122
Query: 246 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 123 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 182
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A LG++ QA FTG G
Sbjct: 183 AMMAVLGYFTQAIFTGVG 200
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 15 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 73
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G + W++ G G Y P + + + LM E R
Sbjct: 74 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 122
Query: 246 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 123 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 182
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A LG++ QA FTG G
Sbjct: 183 AMMAVLGYFTQAIFTGVG 200
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 254
E VW++ G LDYLG P L A Q ++ I Q +LM E R G P
Sbjct: 6 EAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLMGAVEGYRIAG----GP 59
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
LG + D YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 60 LGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 116
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 33 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 91
Query: 188 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G + W++ G G Y P + + + LM E R
Sbjct: 92 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 140
Query: 246 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 296
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 141 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 200
Query: 297 AMVAWLGFYIQAAFTGKG 314
AM+A LG++ QA FTG G
Sbjct: 201 AMMAVLGYFTQAIFTGVG 218
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G P GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 90
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 91 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 143
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 311
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 144 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 189
Query: 312 GKG 314
G G
Sbjct: 190 GTG 192
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 106/223 (47%), Gaps = 34/223 (15%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q N LW+ ++ +YL G LPGD+GFD GLS DP +
Sbjct: 42 AKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGI 216
EI + R AM+G +G + PE L VG LV P W++ G G T Y
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVG---LVPPETAIPWFQAGAIPPAG-TYQYWAD 146
Query: 217 PGLHLAGSQGVIVIAICQAL---LMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFD 272
P +I A + L G +Y G+E + GD YPGG +F+
Sbjct: 147 PYTLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKY----LGGSGDPAYPGGPIFN 202
Query: 273 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL +K +ELK+KEIKNGRLAM+A+LG +QA FTG G
Sbjct: 203 PLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVG 245
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 28/239 (11%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGD 143
+Q + T+ A + SS+ +A R+ + Y RP W G P P++L G LPGD
Sbjct: 1 MQASLAPTRVALGRTSSRVQA----RRSAVVVYAASRPLWQPGVTP---PAHLDGTLPGD 53
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
+GFD L + A Y N E+ + RWAMLG G + P L VG ++ P W G
Sbjct: 54 FGFDPLNLGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLNV--PDWADAGK 111
Query: 204 SKLQGETLDYLGIPGLHLAGSQ----GVIVIAICQALLMVGP--ECARYCGIE-ALEPLG 256
+ E IP L Q + I + + G E + G E A + G
Sbjct: 112 VYAESEN----AIPFASLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSG 167
Query: 257 IFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+ YPGG F+PL L + + ++ K +EI+NGRLAM+A+LGF Q A TGKG
Sbjct: 168 V-----SGYPGGP-FNPLGLGNSSKESMDDFKWREIRNGRLAMMAFLGFLAQHAATGKG 220
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 56 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
L P W+ G + A S + VI + +L E R+ I+
Sbjct: 114 LNAPEWYDAGKET--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 156
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P + YP G++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 157 GSVNQDPIFKSYSLPPHECGYP-GSVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 211
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 212 LVQHNVTGKG 221
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQ----------KYFNF-EILHARWAMLGALGALVPE 183
YL G LPGDYGFD GL DP ++ + E++HARWAMLGA G + PE
Sbjct: 69 YLDGTLPGDYGFDPLGLL-DPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 184 VLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV--- 239
+L G V W+R G G D+ P + V+AI A L
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFF----IEVVAIQFAELKRLQD 183
Query: 240 ----GPECARY-CGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIK 292
G + +Y G+E L G N YPGG F+ N K ++LK+ EIK
Sbjct: 184 YKNPGSQSRQYFLGLEGL------FKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIK 237
Query: 293 NGRLAMVAWLGFYIQAAFTGKG 314
NGRLAM+A G+ QA TG G
Sbjct: 238 NGRLAMLAMFGYGAQAVITGDG 259
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 39 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 96
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
L P W+ G + A S + VI + +L E R+ I+
Sbjct: 97 LNAPEWYDAGKET--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 139
Query: 251 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF P + YP G++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 140 GSVNQDPIFKSYSLPPHECGYP-GSVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 194
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 195 LVQHNVTGKG 204
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 96/207 (46%), Gaps = 40/207 (19%)
Query: 134 SYLTGELPGDYGFDVAGL------SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
SYL G LPGD GFD GL S M+ + E++H RWAMLGA G L PE L
Sbjct: 19 SYLDGTLPGDMGFDPLGLFDPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGCLAPEYL-- 76
Query: 188 VGAFHLVEP-----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPE 242
A V P +W++ G+ DY G+P V + + Q LM E
Sbjct: 77 --AHEKVIPKATGLLWFKTGFLPPVSAGFDY-GLP---------VTALFLIQMGLMGTVE 124
Query: 243 CARYC-----GIEALEPL---------GIFLPGDINYPGGALFDPLNL-SKDPVAFEELK 287
R+ G A PL G G YPGG +F+PL L + P E +
Sbjct: 125 SLRWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREYQ 184
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKG 314
EI++GRLAMVA LG+ QA TGKG
Sbjct: 185 QSEIRHGRLAMVACLGYAAQAVVTGKG 211
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 106/222 (47%), Gaps = 28/222 (12%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q + LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 42 AKQGADRQLWFASKQSL----------SYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGL 219
E+ + R AM+G +G + PE+L +G + W++ G G T Y P
Sbjct: 91 LAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWADPYT 149
Query: 220 HLAGSQGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLN 275
++ A Q G +Y G+E + G+ YPGG LF+PL
Sbjct: 150 LFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKY----LAGSGEPAYPGGPLFNPLG 205
Query: 276 L-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
+K +ELK+KEIKNGRLAM+A+LGF +QA FTG G +
Sbjct: 206 FGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPV 247
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 107 ARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
AR AR + RP WL G P P++L G+LPGD+GFD GL + + + + E
Sbjct: 15 ARSARRSVVAKASSRPLWLPGSTP---PAHLKGDLPGDFGFDPLGLGANAESLKWFKESE 71
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++H+RWAM G LV E++ + W+ G E LG GL
Sbjct: 72 LVHSRWAMAAVAGILVQEIVRP-------DVFWYNAGK-----EVESPLGPLGL------ 113
Query: 226 GVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLS 277
+A+ + LM E R+ + +++ IF P ++ YPGG +F P
Sbjct: 114 ----LAV-EFFLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGG-VFAPFI-- 165
Query: 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P ELKVKEIKNGRLAM+A++GF + A TGKG I
Sbjct: 166 --PGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPI 202
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 37/220 (16%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K ++++RQ+ S +R W + D P++L G LPGD+GFD GLS DP +
Sbjct: 15 KSRSVSRQSARASFVVKAQRDVWWPGV--DAPAHLDGSLPGDFGFDPLGLSVDPEMKKWM 72
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E+ HARWAMLG G + P++ P W ++ +Y G
Sbjct: 73 VQAELQHARWAMLGVAGMVGPDLA------PWDTPSW-------IEAGKFEYWAPAG--- 116
Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIE-----ALEPLGIFLPGDIN----YPGGALFD 272
+ Q +M E R+ ++ +PL + D N YPGG LFD
Sbjct: 117 -------PLFFIQMAMMNWAEVRRWQDMKDPGSMNKDPLFGYNANDTNTDVGYPGG-LFD 168
Query: 273 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312
L +K + + LK+KEIKNGRLAMVA G ++Q A TG
Sbjct: 169 KLGYAKKDL--DTLKLKEIKNGRLAMVAIAGCFVQGATTG 206
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 106/223 (47%), Gaps = 34/223 (15%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q N LW+ ++ +YL G LPGD+GF+ GLS DP +
Sbjct: 42 AKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFNPLGLS-DPEGTGGFIEPRW 90
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGI 216
EI + R AM+G +G + PE L VG LV P W++ G G T Y
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVG---LVPPETAIPWFQAGAIPPAG-TYQYWAD 146
Query: 217 PGLHLAGSQGVIVIAICQAL---LMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFD 272
P +I A + L G +Y G+E + GD YPGG +F+
Sbjct: 147 PYTLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKY----LGGSGDPAYPGGPIFN 202
Query: 273 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
PL +K +ELK+KEIKNGRLAM+A+LG +QA FTG G
Sbjct: 203 PLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVG 245
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 100/203 (49%), Gaps = 31/203 (15%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+RP W IP PSYL G LPGD+G+D LS P + E+ +ARWAMLG G
Sbjct: 42 DRPLWCPGIPA--PSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGM 99
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 239
L ++L G P W+ D + ++ A + + +I Q +LM
Sbjct: 100 LSVDLLQ--GILPDNVPQWY------------DAPLLADVYPAEWKSLFII---QMILMG 142
Query: 240 GPECARYCGIEA-----LEPL--GIFLP--GDINYPGGALFDPLNLSKDPVAFEELKVKE 290
E R+ I ++P+ LP G YPGG +FDPL SK EE K KE
Sbjct: 143 FVEARRWADINTPGSANVDPVFNNNKLPDSGTPGYPGG-MFDPLGFSKG--NLEESKWKE 199
Query: 291 IKNGRLAMVAWLGFYIQAAFTGK 313
++NGRLAMVA LG +IQ TGK
Sbjct: 200 LRNGRLAMVASLGMFIQYDATGK 222
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 32/190 (16%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PE+L G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGL-- 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 250
L P W+ G + A S + V+ + +L E R+ I+
Sbjct: 116 LSAPEWYDAGKET--------------YFASSSTLFVV---EFILFHYVEIRRWQDIKNP 158
Query: 251 -ALEPLGIF----LPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 304
++ IF LP D YP G++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 159 GSVNQDPIFKSYSLPDHDCGYP-GSVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 213
Query: 305 YIQAAFTGKG 314
+Q TGKG
Sbjct: 214 LVQHNVTGKG 223
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 89/189 (47%), Gaps = 28/189 (14%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD+GFD L +P + Y E++HAR+AML G LVPE+L +G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGF-- 125
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-----C 247
W G + Y P L G Q LL E RY
Sbjct: 126 ----SWPGAGVAWYDAGKFQYFA-PASSLFG---------VQMLLFAWAELRRYQDFVKP 171
Query: 248 GIEALEPL--GIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
G +P+ LP D N PG G +FDP SK + + LK KEIKNGRLAM+A+ G
Sbjct: 172 GSANQDPIFSNNKLP-DGNEPGYPGGIFDPFGWSKGDM--KSLKTKEIKNGRLAMLAFAG 228
Query: 304 FYIQAAFTG 312
F QA TG
Sbjct: 229 FAAQAYTTG 237
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 89/189 (47%), Gaps = 28/189 (14%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD+GFD L +P + Y E++HAR+AML G LVPE+L +G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGF-- 125
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-----C 247
W G + Y P L G Q LL E RY
Sbjct: 126 ----SWPGAGVAWYDAGKFQYFA-PASSLFG---------VQMLLFAWAELRRYQDFVKP 171
Query: 248 GIEALEPL--GIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 303
G +P+ LP D N PG G +FDP SK + + LK KEIKNGRLAM+A+ G
Sbjct: 172 GSANQDPIFSNNKLP-DGNEPGYPGGIFDPFGWSKGDM--KSLKTKEIKNGRLAMLAFAG 228
Query: 304 FYIQAAFTG 312
F QA TG
Sbjct: 229 FAAQAYTTG 237
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 66/104 (63%), Gaps = 9/104 (8%)
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P L +Q ++ I CQ +LM E R G PLG + D YPGG+
Sbjct: 3 LDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS- 53
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 54 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 97
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 83/163 (50%), Gaps = 21/163 (12%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 252
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 253 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 295
P YPGGA FDPL SKDP EELKVKEIKNG+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGK 196
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 107 ARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
AR AR + RP WL G P P++L GELPGD+GFD GL + + + + E
Sbjct: 15 ARSARRSVVSKASSRPLWLPGSTP---PAHLKGELPGDFGFDPLGLGANAESLKWFKESE 71
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++H RWAM G LV E++ + W+ G E LG GL
Sbjct: 72 LVHCRWAMAAVAGILVQEIVR-------PDVFWYNAGK-----EVESPLGPLGL------ 113
Query: 226 GVIVIAICQALLMVGPECARYCGIE---ALEPLGIF----LPG-DINYPGGALFDPLNLS 277
+A+ + LM E R+ + +++ IF LP ++ YPGG +F P
Sbjct: 114 ----LAV-EFFLMHWVELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGG-VFAPFI-- 165
Query: 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P ELKVKEIKNGRLAM+A++GF + A TGKG I
Sbjct: 166 --PGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPI 202
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EA 251
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E
Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEG 69
Query: 252 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
L+PL YPG A FDPL L+ DP A ELKVKEIKNGRLAM + GF++QA T
Sbjct: 70 LDPL---------YPGDA-FDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVT 119
Query: 312 GKGMI 316
GKG I
Sbjct: 120 GKGPI 124
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYF-------NFEILHARWAMLGALGALVPEVLD 186
SYLTG LP DYGFD GL DP F E++HARWAMLGA G + PE+L
Sbjct: 34 SYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILA 92
Query: 187 MVGAFHLV--EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC-----QALLMV 239
G E +W++ G G Y P + VI++ Q
Sbjct: 93 TAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDP--YSLFFIEVILVQFAELRRWQDFRNP 150
Query: 240 GPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
G + +Y G+E + + GD +YPGG F+ NL K + +ELK KE+KNGRLAM
Sbjct: 151 GSQGKQYFLGLEEV----LKGSGDPSYPGGQFFNLFNLGKSDL--KELKTKELKNGRLAM 204
Query: 299 VAWLGFYIQAAFTGKG 314
+A G+ QA T +G
Sbjct: 205 LAVFGYGAQAVITAEG 220
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 110 ARNESLWYGEERPRWLGPIPYDY------PSYLTGELPGDYGFD--VAGLSKDPMAFQKY 161
AR + L YGE R ++L + P YLTGE+PGD G+D G +D M ++
Sbjct: 1234 ARVDDL-YGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIMKLRER 1292
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAML A+G LVPE + F WW + + G GIP L
Sbjct: 1293 ---ELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNT-HIEWTGTN---SGIPELTY 1345
Query: 222 AGSQ---GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 278
G GV + I L E R +E + F D YPGG LFDPL +
Sbjct: 1346 LGENIPWGVFWLPIIHLPLFFVAEMLRTGRLE----VEAFKDLDRLYPGGKLFDPLGIGG 1401
Query: 279 DPVAFEELKV---KEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318
V+ EELK+ EI++ RLAM+A GF ++A G G + V
Sbjct: 1402 G-VSDEELKILKTIEIQHCRLAMIASFGFIVEALAWGAGPLDV 1443
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 102/239 (42%), Gaps = 70/239 (29%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 153
+RP W P YL G L GDYGFD GL K
Sbjct: 51 DRPLWFPGA--KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIG 108
Query: 154 ------DP-----------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
DP Q++ E++H RWAML LGA+ E L V
Sbjct: 109 TRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV-------- 160
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPL 255
W G +L + YLG P L + I I +L++G E R +++ + L
Sbjct: 161 TWQDAGKVELVDGS-SYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKRL 213
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG FDPL L+ DPV +L++ EIK+ RLAMV +LGF +QAA TGKG
Sbjct: 214 ---------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKG 263
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 101/215 (46%), Gaps = 44/215 (20%)
Query: 104 KALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
+ LA A N ++ R W+ G P P++LTG LP DYGFD GL K+P ++
Sbjct: 20 RKLATNATNGTVGKVSARAVWMPGSTP---PAHLTGTLPCDYGFDPLGLGKEPANLARFQ 76
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG------I 216
EI+H+RWAMLG GA E + G + PV ++ YLG +
Sbjct: 77 EAEIIHSRWAMLGVAGAAGQEAI--TGVTWIEAPVQ----------DSQTYLGAESPFPL 124
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 276
P +V+AI + +M E R + + L YPGGA FDP
Sbjct: 125 P----------VVVAI-EVFVMAFVEQQRSNEKDPAKRL---------YPGGA-FDPAGF 163
Query: 277 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311
SK FE LK KEI NGR+AM+A+ G QA T
Sbjct: 164 SKG-ADFETLKKKEIANGRVAMLAFAGLIGQAQAT 197
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 67/108 (62%), Gaps = 14/108 (12%)
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA--LEPLGIFLPGDINYPGG 268
LDYLG P +L +Q ++ I CQ +LM E R G + L+PL YPGG
Sbjct: 9 LDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRIAGDPSGGLDPL---------YPGG 57
Query: 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
A FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG I
Sbjct: 58 A-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 104
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 97/196 (49%), Gaps = 35/196 (17%)
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFH 192
LPGDYGFD GLS DP + E+++ R+AMLGA+GA+ PE+ +G
Sbjct: 5 RLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMG--- 60
Query: 193 LVEP----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-- 246
++ P W++ G G T +Y A S + V + LM E R
Sbjct: 61 IIPPETALPWFKTGVIPPAG-TYNYW-------ADSYTLFVFNMA---LMGFAEHRRLQD 109
Query: 247 ------CGIEALEPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
G + L FL GD +YPGG LF+PL K ELK+KEIKNGRLAM
Sbjct: 110 WYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAM 169
Query: 299 VAWLGFYIQAAFTGKG 314
+A LG++IQ TG G
Sbjct: 170 LAILGYFIQGLVTGVG 185
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 102/239 (42%), Gaps = 70/239 (29%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 153
+RP W G + P YL G L GDYGFD GL K
Sbjct: 50 DRPLWFPGAVA---PEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDII 106
Query: 154 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
+ Q++ E++H RWAML LGAL E L V
Sbjct: 107 GTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 159
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
W G +L+ + YLG P L S ++ + LL+ E R ++ + L
Sbjct: 160 -TWQDAGKVELENGS-SYLGQP---LPFSMTTLIW--IEVLLIGYIEFQRNAELDPEKRL 212
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKG
Sbjct: 213 ---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKG 262
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 85/194 (43%), Gaps = 45/194 (23%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W + P+YLTGE PGD GFD AGLS DP F + EI+H R AML +G
Sbjct: 83 EERLLWFPNV--TPPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVG 140
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
ALVP+ L +G + I G+ + Q I + +
Sbjct: 141 ALVPDFLG--------------------KGNWFEAPAIAGIDIGDVQQFI---LGYGVFE 177
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 298
G + A+ YPG FDPLNL+ D K EIKNGRLA+
Sbjct: 178 FGRGLNKSSNPAAI------------YPG---FDPLNLTSD-----YTKEAEIKNGRLAL 217
Query: 299 VAWLGFYIQAAFTG 312
A LGF +Q G
Sbjct: 218 TAMLGFEVQRHVVG 231
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
+PG FDP LS DP F+ +++ EI +GR+AM+A +G + F GKG
Sbjct: 102 FPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALV-PDFLGKG 150
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 86/199 (43%), Gaps = 61/199 (30%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+PE+L +G + +P++ +KL G + Y G
Sbjct: 129 IFIPELLTKLGILN-TDPIF---PNNKLTGTDVGYPG----------------------- 161
Query: 239 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 297
G FDPL S P +EL+ KEIKNGRLA
Sbjct: 162 -----------------------------GLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 192
Query: 298 MVAWLGFYIQAAFTGKGMI 316
M++ +G + QA +TG G I
Sbjct: 193 MLSVMGAWFQAEYTGTGPI 211
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 97/219 (44%), Gaps = 41/219 (18%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L +S+ R + E+P WL + + P +L LP DYGFD GL +P
Sbjct: 6 LGQTSRVTPTNSTRRMSPVTQATEQPVWLPGV--NVPQHLNRNLPADYGFDPLGLGSEPE 63
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
A + Y E++H R+AMLG G L+P +L VG ++ P W+ G ++ +
Sbjct: 64 ALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNV--PQWYEAGKVAIESQPF----- 116
Query: 217 PGLHLAGSQGVIVIAICQALLMVGPECAR---------------YCGIEALEPLGIFL-- 259
GL+ G Q +M E R Y G E L P +F
Sbjct: 117 -GLNFQTLLGF------QLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEML-PGKVFALG 168
Query: 260 -PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 297
GD NYPGG LF+P+ + D +KVKEI NGR A
Sbjct: 169 GSGDPNYPGG-LFNPMGMGDD-----SMKVKEIANGRTA 201
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 64/104 (61%), Gaps = 9/104 (8%)
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPGG+
Sbjct: 3 LDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS- 53
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 54 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 97
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 64/104 (61%), Gaps = 9/104 (8%)
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPGG+
Sbjct: 7 LDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS- 57
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 58 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 101
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 94/204 (46%), Gaps = 40/204 (19%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + N E++H RWAMLG G + PEVL
Sbjct: 60 SYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 245
+G VW++ G QG T DY P I A LM E R
Sbjct: 119 MGIIPQETGLVWFKAGMIPAQG-TYDYWASP----------FTIFWINAFLMNIAELRRA 167
Query: 246 -------------YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 292
+ G+E + + GD YPGG F+ + + +A +K KEIK
Sbjct: 168 QDYWNPGSMGKQDFAGLEKM----LGGSGDPAYPGG-FFNFMKQGEKDMA--AMKTKEIK 220
Query: 293 NGRLAMVAWLGFYIQAAFTGKGMI 316
NGRLAM+A G QA TG+G +
Sbjct: 221 NGRLAMMACFGCGAQACMTGEGPV 244
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 111/268 (41%), Gaps = 86/268 (32%)
Query: 92 TKKAALQDSSKFKALARQARNESLWY-GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
TKK+A + S A+ + LWY G + P WL G L GDYGFD G
Sbjct: 36 TKKSAPKRS------AKPTSDRPLWYPGAKAPEWL-----------DGSLVGDYGFDPFG 78
Query: 151 LSK-------------------------------------------DPMAFQKYFNFEIL 167
L K + Q++ E++
Sbjct: 79 LGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELI 138
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAML LGAL E L V W G +L E YLG P L +
Sbjct: 139 HGRWAMLATLGALTVEWLTGV--------TWQDAGKVELV-EGSSYLGQP-LPFS----- 183
Query: 228 IVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 286
I I +L++G E R ++ + L YPGG FDPL L++DP L
Sbjct: 184 ITTLIWIEVLVIGYIEFQRNSELDPEKRL---------YPGGKFFDPLGLAEDPEKKATL 234
Query: 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 235 QLAEIKHARLAMVAFLGFAVQAAVTGKG 262
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 67/108 (62%), Gaps = 10/108 (9%)
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 266
+GE LDYLG P L +Q ++ CQ +LM E R G PLG + D YP
Sbjct: 6 EGE-LDYLGNP--SLVHAQSILASWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYP 56
Query: 267 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
GG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 57 GGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 103
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 18/146 (12%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA GA++PE + GA E VW++ G L G TL Y G IP ++V
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIP-------INLVVA 53
Query: 231 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 290
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 54 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 104
Query: 291 IKNGRLAMVAWLGFYIQAAFTGKGMI 316
IKNGRLAM + F+IQA TG+G +
Sbjct: 105 IKNGRLAMFSMFAFFIQAYVTGEGPV 130
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 90/199 (45%), Gaps = 28/199 (14%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+AR RP W + P++L G+LP DYGFD L + P +Y E++H
Sbjct: 19 KARARVTARASARPMWFPGA--EAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMH 76
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAM+G GA+ E+ G + +P W L ET P + G GV+
Sbjct: 77 ARWAMMGVAGAVGVEIAGQ-GDWASAQPTTWDATAKYLGNETH----APLFAVIGVNGVL 131
Query: 229 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288
V A ++ AR YPGG+ FDP LSK FE LK
Sbjct: 132 V-AFAESQRQAATGEARL------------------YPGGS-FDPAGLSKG-KDFETLKR 170
Query: 289 KEIKNGRLAMVAWLGFYIQ 307
KE+ NGR+AM+A+ G Q
Sbjct: 171 KELANGRVAMMAFFGIMAQ 189
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 102/239 (42%), Gaps = 70/239 (29%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 153
+RP W G + P YL G L GDYGFD GL K
Sbjct: 50 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDII 106
Query: 154 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
+ Q++ E++H RWAML LGAL E L V
Sbjct: 107 GTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 159
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 255
W G +L + YLG P L S ++ + LL+ E R +++ + L
Sbjct: 160 -TWQDAGKVELV-DGSSYLGQP---LPFSMTTLIW--IEVLLIGYIEFQRNAELDSEKRL 212
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKG
Sbjct: 213 ---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKG 262
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 64/104 (61%), Gaps = 9/104 (8%)
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
LDYLG P +L +Q ++ I CQ +LM E R G PLG D YPGG
Sbjct: 9 LDYLGSP--NLVHAQSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN- 59
Query: 271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 60 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 103
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 105/217 (48%), Gaps = 42/217 (19%)
Query: 110 ARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
AR + RP WL G P P++L GELPGD+GFD GL +P + + + E++H
Sbjct: 17 ARRSVVAKASSRPLWLPGSTP---PAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVH 73
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
+RWAM G LV E+ V P V+W S+++ L LG+
Sbjct: 74 SRWAMAAVAGILVQEI---------VRPDVFWYSAGSQVE-SPLGPLGLLAFEF------ 117
Query: 228 IVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKD 279
C + E R+ + +++ IF P + YPGG +F P
Sbjct: 118 ----FCMHWV----ELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGG-VFAPFI---- 164
Query: 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316
P ELKVKEIKNGRLAM+A++GF + A TGKG I
Sbjct: 165 PGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPI 201
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFH 192
LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 193 LVEPV-WWRVGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-C 247
+ W++ G G D + L +A G Q G +Y
Sbjct: 73 AETALPWFQTGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFL 131
Query: 248 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 132 GLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Query: 308 AAFTGKG 314
TG G
Sbjct: 188 GLVTGVG 194
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 95/225 (42%), Gaps = 66/225 (29%)
Query: 133 PSYLTGELPGDYGFDVAGLSK--------------------------------------- 153
P YL G L GDYGFD GL K
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 154 ----DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
+ Q++ E++H RWAML LGAL E L V W G +L E
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV--------TWQDAGKVELV-E 174
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
YLG P L + + + +AL++ E R ++ + L YPGG+
Sbjct: 175 GSSYLGQP-LPFS----ITTLIWIEALVIGYIEFQRNAELDPEKRL---------YPGGS 220
Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
FDPL L+ DP L++ EIK+ RLAMV +LGF +QAA TGKG
Sbjct: 221 YFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKG 265
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 102/240 (42%), Gaps = 72/240 (30%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 153
+RP W P +L G L GDYGFD GL K
Sbjct: 111 DRPLWFPGA--KSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 168
Query: 154 -----------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
+ Q++ E++H RWAML LGAL E L V
Sbjct: 169 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV-------- 220
Query: 197 VWWRVGYSKL-QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 254
W G +L +G T YLG P L S I I +L++G E R +++ +
Sbjct: 221 TWQDAGKVELVEGST--YLGQP---LPFS---ITTLIWIEVLVIGYIEFQRNAELDSEKR 272
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L YPGG FDPL L+ DP L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 273 L---------YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 323
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 103/240 (42%), Gaps = 72/240 (30%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 153
+RP W G + P YL G L GDYGFD GL K
Sbjct: 53 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEII 109
Query: 154 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
+ Q++ E++H RWAML LGAL E L V
Sbjct: 110 GTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 162
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 254
W G +L + YLG P L + I I +L++G E R ++ +
Sbjct: 163 -TWQDAGKVELVDGS-SYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDPEKR 214
Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
L YPGG+ FDPL L+ DP E L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 215 L---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKG 265
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 99/239 (41%), Gaps = 70/239 (29%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------DP----------------- 155
+RP W P YL G L GDYGFD GL K DP
Sbjct: 53 DRPLWFPGA--QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIG 110
Query: 156 -------------------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
Q++ E++H RWAML LGAL E L V
Sbjct: 111 TRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV-------- 162
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPL 255
W G +L + YLG P I I +L++G E R ++ + L
Sbjct: 163 TWQDAGKVELV-DGSSYLGQP------LPFTITTLIWIEVLVIGYIEFQRNAELDPEKRL 215
Query: 256 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKG
Sbjct: 216 ---------YPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKG 265
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,505,846,037
Number of Sequences: 23463169
Number of extensions: 236362880
Number of successful extensions: 511486
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 504878
Number of HSP's gapped (non-prelim): 3489
length of query: 324
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 182
effective length of database: 9,027,425,369
effective search space: 1642991417158
effective search space used: 1642991417158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)