Query 020599
Match_columns 324
No_of_seqs 229 out of 1151
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 1.6E-91 3.6E-96 670.3 25.3 303 18-322 6-309 (324)
2 PLN00025 photosystem II light 100.0 6.2E-61 1.3E-65 450.3 16.2 201 112-322 42-242 (262)
3 PLN00187 photosystem II light- 100.0 4.7E-57 1E-61 428.0 14.2 187 111-322 42-271 (286)
4 PLN00098 light-harvesting comp 100.0 2.3E-55 5E-60 413.6 16.2 189 113-322 54-251 (267)
5 PLN00097 photosystem I light h 100.0 4.7E-55 1E-59 406.8 16.0 185 117-322 40-233 (244)
6 PLN00048 photosystem I light h 100.0 1.6E-54 3.4E-59 407.4 15.0 196 113-322 34-246 (262)
7 PLN00147 light-harvesting comp 100.0 8.7E-54 1.9E-58 400.2 17.7 190 113-322 37-236 (252)
8 PLN00101 Photosystem I light-h 100.0 2.9E-54 6.3E-59 402.9 14.3 184 113-322 45-236 (250)
9 PLN00099 light-harvesting comp 100.0 9.7E-53 2.1E-57 391.6 16.1 180 119-322 42-223 (243)
10 PLN00100 light-harvesting comp 100.0 4.4E-51 9.5E-56 380.2 13.1 165 118-322 32-196 (246)
11 PLN00170 photosystem II light- 100.0 2.4E-50 5.1E-55 377.2 15.0 179 119-320 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 5E-42 1.1E-46 297.8 12.8 153 132-309 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.1E-41 2.4E-46 311.6 13.6 159 132-317 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.7E-35 3.8E-40 269.7 11.5 148 146-317 47-199 (202)
15 PLN00101 Photosystem I light-h 99.6 4.5E-16 9.8E-21 146.3 5.1 57 262-318 67-123 (250)
16 PLN00098 light-harvesting comp 99.6 8.2E-16 1.8E-20 145.8 5.3 57 262-318 76-132 (267)
17 PLN00147 light-harvesting comp 99.6 2.7E-15 5.8E-20 141.4 5.1 53 262-314 59-111 (252)
18 PLN00170 photosystem II light- 99.5 1.3E-14 2.8E-19 136.8 5.8 55 262-316 71-125 (255)
19 PLN00171 photosystem light-ha 99.5 9.2E-15 2E-19 141.5 4.8 55 262-316 124-178 (324)
20 PLN00097 photosystem I light h 99.5 1.4E-14 2.9E-19 136.0 5.1 54 262-315 58-111 (244)
21 PLN00025 photosystem II light 99.5 2.7E-14 5.9E-19 135.2 5.5 53 262-314 67-119 (262)
22 PLN00100 light-harvesting comp 99.5 4.9E-14 1.1E-18 132.3 5.3 50 262-311 49-98 (246)
23 PLN00048 photosystem I light h 99.4 9.1E-14 2E-18 131.7 4.7 53 137-189 186-238 (262)
24 PLN00099 light-harvesting comp 99.4 1.5E-13 3.2E-18 129.1 4.9 51 262-312 58-108 (243)
25 PLN00187 photosystem II light- 99.4 2.6E-13 5.5E-18 129.9 5.3 53 137-189 211-263 (286)
26 PLN00089 fucoxanthin-chlorophy 99.4 3.6E-13 7.8E-18 124.0 5.9 52 138-189 153-205 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.5E-12 3.3E-17 113.1 4.8 50 135-184 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 3E-10 6.5E-15 104.3 5.3 39 143-185 154-192 (202)
29 PHA02337 putative high light i 98.0 6.8E-06 1.5E-10 56.1 2.9 28 288-315 4-31 (35)
30 PLN00084 photosystem II subuni 97.8 1.6E-05 3.5E-10 71.8 3.3 40 281-320 130-170 (214)
31 PLN00014 light-harvesting-like 97.4 0.0001 2.2E-09 69.3 3.4 37 286-322 159-195 (250)
32 PHA02337 putative high light i 96.7 0.0016 3.6E-08 44.5 3.0 26 162-187 3-28 (35)
33 PLN00014 light-harvesting-like 94.6 0.018 3.9E-07 54.5 1.7 30 162-191 160-189 (250)
34 PLN00084 photosystem II subuni 88.7 0.29 6.3E-06 44.8 2.2 35 157-191 131-166 (214)
35 PLN02449 ferrochelatase 45.0 13 0.00029 38.8 2.0 22 296-317 463-484 (485)
36 PHA00649 hypothetical protein 25.8 85 0.0018 25.1 3.2 31 153-184 31-68 (83)
37 PF14672 LCE: Late cornified e 25.8 31 0.00068 28.0 0.8 10 18-27 23-32 (83)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.6e-91 Score=670.28 Aligned_cols=303 Identities=79% Similarity=1.309 Sum_probs=280.9
Q ss_pred ccccCC-CCCchhHHHHhcCccccccccCCCCcchhhhhHhhhhhhhhhcccchhHHHHhhcChhhHHHHHHHHHhhHHh
Q 020599 18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA 96 (324)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (324)
||-+|| ++.-++++++++++|++.. +++.+++|||||||+|||+||||+|||++|+||||+||++||++++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (324)
T PLN00171 6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA 83 (324)
T ss_pred cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence 444444 3445689999999999988 7788999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHh
Q 020599 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176 (324)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAv 176 (324)
+++++++++.++++|+.+.||+++|++||||+++++|+||||++|||||||||||++||++++||||+|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccccccCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC
Q 020599 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256 (324)
Q Consensus 177 vG~lvpEll~~~G~i~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g 256 (324)
+|+++||++++.|.+++++|+||++|+..+++..++|+++|+..+++.|.++.++++|+++|+++|++|+.+++..++.+
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g 243 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG 243 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence 99999999988888888889999999988888888898888766667788999999999999999999998876555556
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 257 ~~~pGD~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
.+.|||.+||||.+|||||+++|+++++++|++|||||||||+||+||++|+.+||+||++++..+
T Consensus 244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~h 309 (324)
T PLN00171 244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDH 309 (324)
T ss_pred ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 678999999999889999999999999999999999999999999999999999999999998754
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=6.2e-61 Score=450.27 Aligned_cols=201 Identities=52% Similarity=0.903 Sum_probs=178.0
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccccc
Q 020599 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (324)
Q Consensus 112 ~~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i 191 (324)
+.+.||+++|++||||++.++|+||||++|||||||||||++||++++||||+|||||||||||++|+++||+++..| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 567899999999999988789999999999999999999999999999999999999999999999999999998766 4
Q ss_pred ccCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCC
Q 020599 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271 (324)
Q Consensus 192 ~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gF 271 (324)
+|.+++||++|...++...++|++.|.+. +.+.+.++.++|+++|+.+|.+|+.+. +.+. ..|+.||||+ |
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~--~~~~~~a~~~~qv~lmg~~E~~r~~~~----~~~~--~~d~~yPG~~-F 191 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLV--HAQSILAIWACQVVLMGAVEGYRVNGG----PLGE--GLDPLYPGGS-F 191 (262)
T ss_pred CcCcccccccccccccccccccccCcccc--hhhhHHHHHHHHHHHHHHHHHhcccCC----cccc--cccCcCCccc-C
Confidence 57788999999877777778999887643 345667788899999999999998762 2221 2467899997 9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 272 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 272 DPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
|||||++|+++++++|+||||||||||+||+||++|+++||+||++++..+
T Consensus 192 DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~h 242 (262)
T PLN00025 192 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 242 (262)
T ss_pred CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999998754
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=4.7e-57 Score=427.99 Aligned_cols=187 Identities=41% Similarity=0.671 Sum_probs=159.1
Q ss_pred cccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHH---------------------------------
Q 020599 111 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA--------------------------------- 157 (324)
Q Consensus 111 ~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~--------------------------------- 157 (324)
...+.+|+++|++|+|+. ++|+|||||+|||||||||||++||+.
T Consensus 42 ~~~~~~~~~~r~~w~p~~--~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
T PLN00187 42 KKKSSKVGADRPLWFPGA--KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKST 119 (286)
T ss_pred ccCccCCCCCccccCCCC--CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccc
Confidence 346679999999999864 699999999999999999999999986
Q ss_pred ----------HHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhcccccccCCcccccCCCcccccchhhH
Q 020599 158 ----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227 (324)
Q Consensus 158 ----------~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i 227 (324)
++||||+|||||||||||++||++||+++ |. .||++|...+... .+|++.|.. ..+
T Consensus 120 ~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~------~W~~aG~~~~~~g-~~y~g~~~p-----~~~ 185 (286)
T PLN00187 120 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDG-SSYLGQPLP-----FSI 185 (286)
T ss_pred ccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC------ccccccccccccc-ccccccccc-----hhH
Confidence 69999999999999999999999999973 32 4999987654322 247665521 245
Q ss_pred HHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 020599 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 307 (324)
Q Consensus 228 ~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQ 307 (324)
..+.++|+++|+.+|++|+.+.. ..|..||||++||||||.+|+++++++|++|||||||||+|++||++|
T Consensus 186 ~~l~~iqvllmG~~E~~R~~~~~---------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq 256 (286)
T PLN00187 186 TTLIWIEVLVIGYIEFQRNAELD---------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQ 256 (286)
T ss_pred HHHHHHHHHHHHHHHhhhccCCC---------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67789999999999999976521 236679999889999999999999999999999999999999999999
Q ss_pred hhccCcchHHhhhhh
Q 020599 308 AAFTGKGMILVAALW 322 (324)
Q Consensus 308 a~vTGkGPle~~~~~ 322 (324)
+++||+||++++..+
T Consensus 257 ~~vtg~GPi~nL~~H 271 (286)
T PLN00187 257 AAATGKGPLNNWATH 271 (286)
T ss_pred HHhcCCChHHHHHHH
Confidence 999999999998753
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.3e-55 Score=413.56 Aligned_cols=189 Identities=36% Similarity=0.643 Sum_probs=157.8
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 020599 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (324)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~ 192 (324)
...+|+++|++|+|+. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|.
T Consensus 54 ~~~~~~~~r~~w~Pg~--~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-- 129 (267)
T PLN00098 54 VCEPLPPDRPLWFPGS--SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-- 129 (267)
T ss_pred ccccCCCCccccCCCC--CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc--
Confidence 4457999999999875 599999999999999999999999999999999999999999999999999999887775
Q ss_pred cCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC-------ccC-CCCCC
Q 020599 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IFL-PGDIN 264 (324)
Q Consensus 193 ~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g-------~~~-pGD~~ 264 (324)
+..+.||++|.. +|++.| ..+.++|+++|+.+|++|+.++...+..+ ... .+|.+
T Consensus 130 ~~~~~w~~Ag~~-------~~~~~~----------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~ 192 (267)
T PLN00098 130 IENFSWYDAGAR-------EYFADP----------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVG 192 (267)
T ss_pred ccccccccccch-------hhccCc----------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCC
Confidence 345679987643 344433 13568899999999999987754221111 111 23668
Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 265 YPGGALFDPLNLS-KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 265 yPGg~gFDPLGL~-kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
||||++||||||. +|+++++++|+||||||||||+||+||++|+.+||+||++++..+
T Consensus 193 yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~h 251 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAH 251 (267)
T ss_pred CCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHH
Confidence 9999999999997 489999999999999999999999999999999999999998654
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.7e-55 Score=406.77 Aligned_cols=185 Identities=36% Similarity=0.547 Sum_probs=155.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcc
Q 020599 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196 (324)
Q Consensus 117 y~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p 196 (324)
.+++|++|+|+. ++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||+++..|.. ..+
T Consensus 40 ~~~~R~~w~Pg~--~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~~p 115 (244)
T PLN00097 40 AAADRPTWLPGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--DLP 115 (244)
T ss_pred cCCCCcccCCCC--CCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--cCC
Confidence 357899999864 5999999999999999999999999999999999999999999999999999999877753 346
Q ss_pred hhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccC-----CC----CccCCCCCCCCC
Q 020599 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE-----PL----GIFLPGDINYPG 267 (324)
Q Consensus 197 ~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~-----p~----g~~~pGD~~yPG 267 (324)
.||++|... .|+. + ...+..+|+++|+.+|.+|+.++...+ |. ....++|.+|||
T Consensus 116 ~W~~Ag~~~------~~~~-~---------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPg 179 (244)
T PLN00097 116 NWIDAAKWD------GYWA-G---------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPK 179 (244)
T ss_pred ccccCCcch------hccc-c---------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCC
Confidence 899886431 1321 1 124567788899999999988765422 11 113467889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 268 g~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
|. ||||||.+|+++++++|+||||||||||+|++||++|+++||+||++++..+
T Consensus 180 g~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~H 233 (244)
T PLN00097 180 GL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSH 233 (244)
T ss_pred CC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence 95 9999999999999999999999999999999999999999999999998754
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.6e-54 Score=407.36 Aligned_cols=196 Identities=39% Similarity=0.594 Sum_probs=160.4
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHH------HHHHHHHHHHhhhhHHHHHhhhhhhhhhhh
Q 020599 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 186 (324)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe------~~~~yREAELKHGR~AMLAvvG~lvpEll~ 186 (324)
....|+++|++|+|+ .++|+||||++|||||||||||+ ||+ +.+|+|++|||||||||||++|+++||+++
T Consensus 34 ~~~~~~~~r~~w~p~--~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFAS--KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCC--CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 456789999999976 36999999999999999999998 443 568999999999999999999999999998
Q ss_pred cccccccC-cchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC--------c
Q 020599 187 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------I 257 (324)
Q Consensus 187 ~~G~i~~~-~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------~ 257 (324)
+.|.+... ...||++|..... ...+|++.| ..+.++|+++|+.+|++|+.++...++.+ .
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~~-~~~~y~~~p----------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPPA-GTYDYWADP----------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred cCCccccccccccccccccccc-cccccccch----------hHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 77765332 2369998864322 235676554 24568899999999999988765432211 0
Q ss_pred cC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 258 FL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 258 ~~--pGD~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
.. .+|..||||++||||||++|+++++++|+||||||||||+|++||++|+++||+||++++..+
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~h 246 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDH 246 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHH
Confidence 11 247789999999999999999999999999999999999999999999999999999998754
No 7
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=8.7e-54 Score=400.23 Aligned_cols=190 Identities=39% Similarity=0.652 Sum_probs=156.4
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 020599 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (324)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~ 192 (324)
.+..++++|++|+|.. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|.+.
T Consensus 37 ~~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 37 INPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred CcccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 3457789999999875 59999999999999999999999999999999999999999999999999999988777543
Q ss_pred cCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC---cc-------CCCC
Q 020599 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG---IF-------LPGD 262 (324)
Q Consensus 193 ~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g---~~-------~pGD 262 (324)
.|.||++|..++ ++ . ....++++|+++|+.+|..|+.++.+.+... .+ ..-|
T Consensus 115 --~p~w~~ag~~~~-----~~-~----------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~ 176 (252)
T PLN00147 115 --LPVWYEAGAVKF-----EF-A----------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLE 176 (252)
T ss_pred --Ccchhhcccchh-----cc-c----------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccC
Confidence 467998764322 11 1 1134578899888889999987664321110 00 0124
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 263 ~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
+.||||++||||||.+|+++++++|+||||||||||+||+||++|+++||+||++++..+
T Consensus 177 ~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~h 236 (252)
T PLN00147 177 PGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTH 236 (252)
T ss_pred CCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999998754
No 8
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.9e-54 Score=402.88 Aligned_cols=184 Identities=37% Similarity=0.710 Sum_probs=154.3
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 020599 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (324)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~ 192 (324)
.+.++.++|++|+|.. ++|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||+++..|.+.
T Consensus 45 ~~~~~~~~r~~W~P~~--~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~ 122 (250)
T PLN00101 45 RSFKVEAKKGEWLPGL--ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122 (250)
T ss_pred ccccccccccccCCCC--CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcC
Confidence 4567788999999764 59999999999999999999999999999999999999999999999999999998877643
Q ss_pred cCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC--------ccCCCCCC
Q 020599 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------IFLPGDIN 264 (324)
Q Consensus 193 ~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------~~~pGD~~ 264 (324)
.|.||++|.. +|+..+ ..+.++|+++|+.+|++|+.++...+..+ ...+||.+
T Consensus 123 --~p~w~~ag~~-------~~~~~~----------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~ 183 (250)
T PLN00101 123 --APQWYDAGKA-------EYFASS----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183 (250)
T ss_pred --CCccccccch-------hhcccc----------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCcccc
Confidence 4679987653 243322 24567788999999999988765332211 12368899
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 265 yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
||||. ||||||+++ +++|+||||||||||+||+||++|+++||+||++++..+
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~h 236 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQH 236 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHH
Confidence 99995 999999876 379999999999999999999999999999999998754
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=9.7e-53 Score=391.57 Aligned_cols=180 Identities=40% Similarity=0.661 Sum_probs=146.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchh
Q 020599 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (324)
Q Consensus 119 ~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W 198 (324)
++|..|+|.. ++|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++. +.|
T Consensus 42 ~~~~~w~P~~--~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWMPGQ--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred cccccccCCC--CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 5667888764 599999999999999999999999999999999999999999999999999998642 247
Q ss_pred hhcccc-cccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 020599 199 WRVGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (324)
Q Consensus 199 ~~aG~~-~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~ 277 (324)
++++.. .+.+...+|++.|. ....++.++++|+++++.+|.+|.... .+.+..|||| +|||||+.
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~----~~~~l~~~~~iqvl~ig~~E~~r~~~~---------~~~~~~yPGd-~FDPlGl~ 177 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYS 177 (243)
T ss_pred ccccchhccCcchhhhccCcc----chhhHHHHHHHHHHHHHHHHHHhhccC---------CCCCCcCCCC-cCCccccc
Confidence 766531 23333445655542 123467788999888888898775321 1234579999 89999999
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-hccCcchHHhhhhh
Q 020599 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGMILVAALW 322 (324)
Q Consensus 278 kdpe~~~~lklkEIKNGRLAMlAilGfvaQa-~vTGkGPle~~~~~ 322 (324)
+|++++++||+||||||||||+||+||++|+ .+||++|++++..+
T Consensus 178 kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~h 223 (243)
T PLN00099 178 KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 223 (243)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHH
Confidence 9999999999999999999999999999999 67999999998653
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=4.4e-51 Score=380.22 Aligned_cols=165 Identities=36% Similarity=0.604 Sum_probs=138.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcch
Q 020599 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (324)
Q Consensus 118 ~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~ 197 (324)
..+|++|+|.. ++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++ + |.
T Consensus 32 ~~~r~~W~P~~--~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~------~--P~ 101 (246)
T PLN00100 32 ARARPMWYPGA--TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG------L--PK 101 (246)
T ss_pred cCCCcccCCCC--CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc------c--cc
Confidence 47788888653 59999999999999999999999999999999999999999999999999999853 2 35
Q ss_pred hhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 020599 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (324)
Q Consensus 198 W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~ 277 (324)
||++|... |.. .+..++++|+++|+.+|.+|+.++.. +|+.++||+++||||||+
T Consensus 102 w~~ag~~~-------~~~----------~~~~l~~iqill~g~~E~~r~~~~~~--------~g~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 102 FWEAGAEK-------YGL----------DLQTLVLIQVVVMAVLEAARYRGFMK--------TGESGVLSFFPFDPTGMD 156 (246)
T ss_pred hhhcchhh-------hcc----------chhHHHHHHHHHHHHHhhhccccccc--------ccccCCCCCCCCCccccc
Confidence 88765432 210 12356788999988899999876531 244557888899999996
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 278 kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
+ ++||+||||||||||+||+||++|+++||+||++++..+
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~h 196 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAH 196 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHh
Confidence 4 579999999999999999999999999999999998764
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=2.4e-50 Score=377.15 Aligned_cols=179 Identities=36% Similarity=0.592 Sum_probs=146.3
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccC
Q 020599 119 EERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (324)
Q Consensus 119 ~~r~~wl~~~~----~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~ 194 (324)
++|+.|++... ..+|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++ |
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g----- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G----- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C-----
Confidence 56677777542 257999999999999999999999999999999999999999999999999999963 2
Q ss_pred cchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCC--------------ccCC
Q 020599 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------------IFLP 260 (324)
Q Consensus 195 ~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g--------------~~~p 260 (324)
..||++|... .++ .| ..+.++..+|+++|+++|.+|+.++...+... ....
T Consensus 122 -~~w~~aG~~~------~~~-~p-------~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~ 186 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANAT 186 (255)
T ss_pred -CChhhCCccc------ccc-Cc-------cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccC
Confidence 2599887542 111 11 12346778899999999999998875432110 0124
Q ss_pred CCCCCCCCCCCCCCCCCC---------CHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhh
Q 020599 261 GDINYPGGALFDPLNLSK---------DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320 (324)
Q Consensus 261 GD~~yPGg~gFDPLGL~k---------dpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~ 320 (324)
||..||||..||||||++ |+++++++|+||||||||||+|++||++|+ .||+||++++.
T Consensus 187 g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 187 GLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 677899997899999985 789999999999999999999999999999 79999999875
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=5e-42 Score=297.75 Aligned_cols=153 Identities=44% Similarity=0.678 Sum_probs=114.3
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccc-cccC-cchhhhcccccccCC
Q 020599 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLV-EPVWWRVGYSKLQGE 209 (324)
Q Consensus 132 ~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~-i~~~-~p~W~~aG~~~~~g~ 209 (324)
+|+||||+++||+||||+||++|+ +++|||++|||||||||||++|++++|+++..+. ..+. .+.|++++ .
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~------~ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG------G 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT------S
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh------h
Confidence 489999999999999999999887 9999999999999999999999999999754321 1111 12243211 0
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHhhc-cchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020599 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288 (324)
Q Consensus 210 ~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g-~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~kdpe~~~~lkl 288 (324)
+ + ++...++|++++++ +|.++.......+..+ ..+..|||+++|||||+.+|+++++++|+
T Consensus 74 -~-----~---------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---~~~~~~pG~~~~dplgl~~~~~~~~~~~~ 135 (156)
T PF00504_consen 74 -I-----P---------VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---GKDGRYPGDLGFDPLGLAKDPEEKEFMQL 135 (156)
T ss_dssp -S-----S---------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS---SSSSSSSSSSSSSTSSTSSSCHSHHCHHH
T ss_pred -h-----h---------hhhHHHHHHHHHHhHhhhhhcccccCCcccc---cccccCccccccchhhhhhhhhhhHHHHH
Confidence 0 0 23345656666655 5888776542211111 23457999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhh
Q 020599 289 KEIKNGRLAMVAWLGFYIQAA 309 (324)
Q Consensus 289 kEIKNGRLAMlAilGfvaQa~ 309 (324)
+|||||||||+||+|+++|+.
T Consensus 136 ~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 136 AELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=311.61 Aligned_cols=159 Identities=30% Similarity=0.375 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCCCccCCCCCC-CHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhcccccccCCc
Q 020599 132 YPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210 (324)
Q Consensus 132 ~P~yLdGs~pGD~GFDPLGLs~-dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W~~aG~~~~~g~~ 210 (324)
.|+.|||+ .||+|||||||++ ++++++|||++||||||+||||++|+++||.++.+|.+. ++
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~-----~~----------- 108 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY-----SF----------- 108 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc-----cc-----------
Confidence 57789999 9999999999985 678899999999999999999999999999977665320 00
Q ss_pred ccccCCCcccccchhhHHHHH-HHHHHHhhcc-chhhccCccccCCCCccCCCCCCCCCCCCCCCCCC-CCCHHHHHHHH
Q 020599 211 LDYLGIPGLHLAGSQGVIVIA-ICQALLMVGP-ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELK 287 (324)
Q Consensus 211 l~ylg~p~l~~ag~~~i~~i~-~~Qill~~g~-E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL-~kdpe~~~~lk 287 (324)
.+.|+. +...+.++..+ ++|+++++++ |....... . .....+| .||||++|||||| .+|+++++++|
T Consensus 109 ---~~~p~~-~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~----~-~~~~~~~-~~PGd~gfdplgl~~~d~~~~~~~~ 178 (209)
T PLN00089 109 ---AAIPKT-IDAHDALLKSGAMIQIFAWIGFVDLAVSAPA----A-AAAAEFD-RTPGDFGFDLLALYPKDAAKMEKKK 178 (209)
T ss_pred ---cccccH-HHHHHhhcccccHHHHHHHHHHHHHHHhhcc----c-cccccCC-CCCCCcCccccccCCCCHHHHHHHH
Confidence 011110 00011122222 5688877664 75322110 0 0011233 5899999999999 46899999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccCcchHH
Q 020599 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGMIL 317 (324)
Q Consensus 288 lkEIKNGRLAMlAilGfvaQa~vTGkGPle 317 (324)
++|||||||||+||+||++|+++||+++++
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999998764
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=269.68 Aligned_cols=148 Identities=26% Similarity=0.326 Sum_probs=104.9
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhcccccccCCcccccCCCcccccc
Q 020599 146 FDVAGLS--KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223 (324)
Q Consensus 146 FDPLGLs--~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag 223 (324)
|||+||+ +|+++++|||++|||||||||||++|+++||+. +++|+. ..+.+.. |.++|.. ...
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g-----~~~Pg~-------~~~~g~~--~~~~p~~-~~a 111 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAG-----IRLPGD-------IDYSGTS--FSDIPNG-FAA 111 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeeccc-----ccCCCc-------ccccccc--ccccccc-hhh
Confidence 9999997 478999999999999999999999999999972 333321 1111211 2222221 112
Q ss_pred hhhHHHHHHHHHHHhhcc-chhhccCccccCCCCccCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHH
Q 020599 224 SQGVIVIAICQALLMVGP-ECARYCGIEALEPLGIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 300 (324)
Q Consensus 224 ~~~i~~i~~~Qill~~g~-E~~r~~g~~~~~p~g~~~pGD~~yPG--g~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlA 300 (324)
...++..+++||++++++ |..+..+... ..+.|||.. || |++|||+ |+++++++|+||||||||||||
T Consensus 112 ~~~vp~~g~~qi~~~ig~~E~~~~~~~~~----~~~~pGd~~-~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMia 182 (202)
T PLN00120 112 LDAIPTAGLLQILAFIGFLELAVMKDITG----EGEFVGDFR-NGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMG 182 (202)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccccc----CCCCCCccC-CCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999988875 8765543210 123345431 22 4456654 7899999999999999999999
Q ss_pred HHHHHHhhhccCcchHH
Q 020599 301 WLGFYIQAAFTGKGMIL 317 (324)
Q Consensus 301 ilGfvaQa~vTGkGPle 317 (324)
|+||++|+.++|+.|+-
T Consensus 183 i~G~~~qe~l~g~~~~~ 199 (202)
T PLN00120 183 ILALMVHEQLGVELPII 199 (202)
T ss_pred HHHHHHHHHccCCCcCC
Confidence 99999999999998864
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.61 E-value=4.5e-16 Score=146.33 Aligned_cols=57 Identities=35% Similarity=0.570 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHh
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~ 318 (324)
|..+|||++||||||++|+++++++|++|||||||||+|++||++|+++|+.|++..
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~ 123 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA 123 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCC
Confidence 445899999999999999999999999999999999999999999999999988743
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.59 E-value=8.2e-16 Score=145.79 Aligned_cols=57 Identities=33% Similarity=0.471 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHh
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILV 318 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~ 318 (324)
|..+|||++||||||++|+++++++|.+||||||+||+|++||++|+++++.|+++.
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 345899999999999999999999999999999999999999999999998877654
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=2.7e-15 Score=141.35 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcc
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkG 314 (324)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 45689999999999999999999999999999999999999999999988655
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.51 E-value=1.3e-14 Score=136.80 Aligned_cols=55 Identities=36% Similarity=0.601 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchH
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPl 316 (324)
|..+|||++||||||.+||++++++|.+||+|||+||+|++||++|+++||...+
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 3458999999999999999999999999999999999999999999999886433
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.51 E-value=9.2e-15 Score=141.49 Aligned_cols=55 Identities=38% Similarity=0.459 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchH
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPl 316 (324)
|..+|||+|||||||++||++++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 3457999999999999999999999999999999999999999999998866543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.50 E-value=1.4e-14 Score=135.97 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcch
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGM 315 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGP 315 (324)
|...|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 335799999999999999999999999999999999999999999999998764
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.48 E-value=2.7e-14 Score=135.16 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcc
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkG 314 (324)
|..+|||++||||||++||++++++|..||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 34579999999999999999999999999999999999999999999998643
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.46 E-value=4.9e-14 Score=132.27 Aligned_cols=50 Identities=36% Similarity=0.485 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vT 311 (324)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 44689999999999999999999999999999999999999999999875
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.43 E-value=9.1e-14 Score=131.71 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=48.8
Q ss_pred CCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 020599 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (324)
Q Consensus 137 dGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G 189 (324)
|..+|||++|||+||++|+++++++|..||||||+||+|++|+++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999976544
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.41 E-value=1.5e-13 Score=129.07 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccC
Q 020599 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (324)
Q Consensus 262 D~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTG 312 (324)
|..+|||++||||||++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 456899999999999999999999999999999999999999999999653
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.39 E-value=2.6e-13 Score=129.90 Aligned_cols=53 Identities=36% Similarity=0.372 Sum_probs=48.8
Q ss_pred CCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 020599 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (324)
Q Consensus 137 dGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G 189 (324)
+..+|||++|||+||++|+++++++|+.||||||+||+|++|+++|++++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999999999986544
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.39 E-value=3.6e-13 Score=123.99 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=47.2
Q ss_pred CCCCCCCCccCCCC-CCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 020599 138 GELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (324)
Q Consensus 138 Gs~pGD~GFDPLGL-s~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G 189 (324)
+..|||+||||+|| .+|+++++++|..||||||+||+|++|+++||+++.-|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999 46899999999999999999999999999999975443
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.31 E-value=1.5e-12 Score=113.14 Aligned_cols=50 Identities=38% Similarity=0.499 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh
Q 020599 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184 (324)
Q Consensus 135 yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEl 184 (324)
+.++.+|||.+|||+||.+|++..+++|.+||+|||.||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688999999999999989999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.02 E-value=3e-10 Score=104.25 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhh
Q 020599 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185 (324)
Q Consensus 143 D~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll 185 (324)
|+||||+ |+++.+++|..||||||+||+|++|++++|++
T Consensus 154 d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l 192 (202)
T PLN00120 154 DFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQL 192 (202)
T ss_pred CCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556665 78889999999999999999999999999986
No 29
>PHA02337 putative high light inducible protein
Probab=97.95 E-value=6.8e-06 Score=56.07 Aligned_cols=28 Identities=36% Similarity=0.353 Sum_probs=25.8
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccCcch
Q 020599 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGM 315 (324)
Q Consensus 288 lkEIKNGRLAMlAilGfvaQa~vTGkGP 315 (324)
..|+-||||||+||...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999874
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.79 E-value=1.6e-05 Score=71.80 Aligned_cols=40 Identities=33% Similarity=0.271 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc-CcchHHhhh
Q 020599 281 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGMILVAA 320 (324)
Q Consensus 281 e~~~~lklkEIKNGRLAMlAilGfvaQa~vT-GkGPle~~~ 320 (324)
+...+.|..|+.||||||+||+--++-+++| |+||+.|+.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~ 170 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFN 170 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhc
Confidence 3567788889999999999999999999999 999999874
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.43 E-value=0.0001 Score=69.29 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=33.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhhh
Q 020599 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAALW 322 (324)
Q Consensus 286 lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~~ 322 (324)
+...|+-|||+|||||+..++-+++||+|.+.|+..|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4558999999999999999999999999999998764
No 32
>PHA02337 putative high light inducible protein
Probab=96.71 E-value=0.0016 Score=44.54 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.2
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhc
Q 020599 162 FNFEILHARWAMLGALGALVPEVLDM 187 (324)
Q Consensus 162 REAELKHGR~AMLAvvG~lvpEll~~ 187 (324)
..+|..+||+||++++-.++.|+++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tG 28 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTG 28 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 35999999999999999999999753
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.55 E-value=0.018 Score=54.47 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.2
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhccccc
Q 020599 162 FNFEILHARWAMLGALGALVPEVLDMVGAF 191 (324)
Q Consensus 162 REAELKHGR~AMLAvvG~lvpEll~~~G~i 191 (324)
.++|+.|||+||+|++-.++.|+++.-|++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 479999999999999999999998766644
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=88.72 E-value=0.29 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhhhhhhh-ccccc
Q 020599 157 AFQKYFNFEILHARWAMLGALGALVPEVLD-MVGAF 191 (324)
Q Consensus 157 ~~~~yREAELKHGR~AMLAvvG~lvpEll~-~~G~i 191 (324)
..+..+..|+.+||+||||++-.++.|+++ .-|.+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344455689999999999999999999987 55543
No 35
>PLN02449 ferrochelatase
Probab=44.95 E-value=13 Score=38.85 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhccCcchHH
Q 020599 296 LAMVAWLGFYIQAAFTGKGMIL 317 (324)
Q Consensus 296 LAMlAilGfvaQa~vTGkGPle 317 (324)
+||+||+.+++-+++||+||+-
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999974
No 36
>PHA00649 hypothetical protein
Probab=25.82 E-value=85 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhhhh-------HHHHHhhhhhhhhh
Q 020599 153 KDPMAFQKYFNFEILHAR-------WAMLGALGALVPEV 184 (324)
Q Consensus 153 ~dpe~~~~yREAELKHGR-------~AMLAvvG~lvpEl 184 (324)
.+|+....||+ .+.|+| -.||+++|.++..+
T Consensus 31 ~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 46777777764 677777 36899999988876
No 37
>PF14672 LCE: Late cornified envelope
Probab=25.80 E-value=31 Score=28.01 Aligned_cols=10 Identities=90% Similarity=1.893 Sum_probs=6.7
Q ss_pred ccccCCCCCc
Q 020599 18 SCCSSSSGGC 27 (324)
Q Consensus 18 ~~~~~~~~~~ 27 (324)
+||.++||||
T Consensus 23 sCC~~ssGgC 32 (83)
T PF14672_consen 23 SCCGSSSGGC 32 (83)
T ss_pred ccccCCCCCc
Confidence 6777666666
Done!