Query 020599
Match_columns 324
No_of_seqs 229 out of 1151
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2E-61 6.9E-66 446.3 18.4 203 109-321 9-211 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.1E-55 3.9E-60 409.4 9.3 181 115-321 5-228 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 9.8E-54 3.3E-58 402.1 -1.4 185 115-320 58-251 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.8E-52 6E-57 394.9 1.6 192 115-320 50-258 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 3.6E-52 1.2E-56 388.4 -1.4 179 115-320 46-233 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.2E-48 4.1E-53 362.8 4.7 178 119-320 43-222 (241)
7 2bhw_A Chlorophyll A-B binding 99.5 4.5E-14 1.5E-18 130.4 6.4 49 264-312 39-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 4.8E-15 1.6E-19 138.3 -1.4 54 264-317 69-122 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 1.4E-14 4.8E-19 136.4 -0.8 53 264-316 80-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 1.6E-13 5.5E-18 127.4 5.2 51 139-190 172-222 (243)
11 2wsc_3 LHCA3, type II chloroph 99.3 1.8E-13 6.2E-18 129.2 1.6 53 137-189 200-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 1.8E-13 6.1E-18 127.0 -0.0 48 264-311 61-108 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 24.3 44 0.0015 20.3 1.9 15 155-169 6-20 (26)
14 3nrt_A Putative ryanodine rece 23.8 48 0.0016 26.5 2.7 23 154-176 23-47 (103)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2e-61 Score=446.33 Aligned_cols=203 Identities=51% Similarity=0.871 Sum_probs=179.1
Q ss_pred hhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 020599 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188 (324)
Q Consensus 109 ~~~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~ 188 (324)
.+.+.+.||+++|++||||++.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||++++.
T Consensus 9 ~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~ 88 (232)
T 2bhw_A 9 VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRN 88 (232)
T ss_dssp -CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccC
Confidence 34457889999999999998778999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccCcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCC
Q 020599 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268 (324)
Q Consensus 189 G~i~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg 268 (324)
| ++|+++.|+++|...+++..++|+++|.+. ..|.+.+++++|+++|+.+|.+|+.+ ++.++ ..|..||||
T Consensus 89 G-~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g~--~~d~~~Pg~ 159 (232)
T 2bhw_A 89 G-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAG----GPLGE--VVDPLYPGG 159 (232)
T ss_dssp T-CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHE----ETTEE--CSSSSCCCT
T ss_pred C-cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhcc----Ccccc--cccccCCCc
Confidence 7 578889999999877766678898888643 35778888999999988899998765 12222 246679999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhhh
Q 020599 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAAL 321 (324)
Q Consensus 269 ~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~~ 321 (324)
+ |||||+.+|+++++++|++|||||||||+||+|+++|+++||+||++++..
T Consensus 160 ~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~ 211 (232)
T 2bhw_A 160 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 211 (232)
T ss_dssp T-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHH
T ss_pred c-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 6 999999999999999999999999999999999999999999999998753
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.1e-55 Score=409.37 Aligned_cols=181 Identities=40% Similarity=0.645 Sum_probs=119.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHH--------------------------------------
Q 020599 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM-------------------------------------- 156 (324)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe-------------------------------------- 156 (324)
.+++++|++|+|+ .++|+|||||+|||||||||||++|||
T Consensus 5 ~~~~~~r~~w~pg--~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPG--AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC--CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 5778899999986 459999999999999999999999987
Q ss_pred -----HHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhcccccccCCcccccCCCcccccchhhHHHHH
Q 020599 157 -----AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231 (324)
Q Consensus 157 -----~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~ 231 (324)
+++||||+|||||||||||++|+++||+++ | ..|+++|...+.+ .++|+++|. .+.+..+.
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g------~~W~~aG~~~~~~-g~~y~g~p~-----~~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G------ITWQDAGKVELIE-GSSYLGQPL-----PFSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CCTTTHHHHHHHS-CEEETTEEE-----CCCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C------ccccccccccccc-ccccccCcc-----chhhHHHH
Confidence 378999999999999999999999999974 2 2588888765543 467877653 23467788
Q ss_pred HHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 020599 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (324)
Q Consensus 232 ~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vT 311 (324)
++|+++|+.+|++|+.+.. +.+..||||+ ||||||++|+++++++|++|||||||||+||+|+++|+++|
T Consensus 149 ~~qv~lmG~~E~~R~~~~~---------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 149 WIEVLVIGYIEFQRNAELD---------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHSCCC---------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccC---------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9999999999999987631 2345799997 99999999999999999999999999999999999999999
Q ss_pred CcchHHhhhh
Q 020599 312 GKGMILVAAL 321 (324)
Q Consensus 312 GkGPle~~~~ 321 (324)
|+||++++..
T Consensus 219 G~Gpl~~l~~ 228 (243)
T 3pl9_A 219 GKGPLNNWVT 228 (243)
T ss_dssp SSCHHHHHHH
T ss_pred CCChHHHHHH
Confidence 9999998753
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=9.8e-54 Score=402.15 Aligned_cols=185 Identities=37% Similarity=0.675 Sum_probs=120.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccC
Q 020599 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (324)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~ 194 (324)
.+|+++|++|||+ .++|+||||++|||||||||||++||++++||||+|||||||||||++|+++||+++..|.+ .
T Consensus 58 ~~~~~~r~~wlpg--~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~--~ 133 (269)
T 2wsc_2 58 TVAEPDRPLWFPG--STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL--N 133 (269)
T ss_dssp --------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--S
T ss_pred cccCCCcccccCC--CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--c
Confidence 4799999999986 45999999999999999999999999999999999999999999999999999999887754 3
Q ss_pred cchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCc--------cCCCCCCCC
Q 020599 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI--------FLPGDINYP 266 (324)
Q Consensus 195 ~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~--------~~pGD~~yP 266 (324)
.|.||++|.. +|+..+ ..++++|+++|+.+|.+|+.++...+..+. ...+|..||
T Consensus 134 ~p~w~~aG~~-------~~~~~~----------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~P 196 (269)
T 2wsc_2 134 TPSWYTAGEQ-------EYFTDT----------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 196 (269)
T ss_dssp CCCCCSTTSS-------SSCCCT----------TSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCT
T ss_pred Cccccccchh-------hhhcch----------HHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCC
Confidence 4678876532 233322 124578888888889999877643322211 113567899
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhh
Q 020599 267 GGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320 (324)
Q Consensus 267 Gg~gFDPLGL~k-dpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~ 320 (324)
||++||||||.+ ||++++++|++|||||||||+||+|+++|+++||+||++++.
T Consensus 197 G~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 197 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred CCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 998899999974 788899999999999999999999999999999999998865
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.8e-52 Score=394.86 Aligned_cols=192 Identities=39% Similarity=0.655 Sum_probs=116.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHH------HHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 020599 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 188 (324)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~------~~yREAELKHGR~AMLAvvG~lvpEll~~~ 188 (324)
..|+++|++|||. .++|+||||++||||||||||| +||+++ +|||++|||||||||||++|++++|+++..
T Consensus 50 ~~~g~~R~~wlP~--~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCCC--CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 3499999999974 4699999999999999999999 588999 999999999999999999999999999877
Q ss_pred cccccCcc-hhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCc----------
Q 020599 189 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---------- 257 (324)
Q Consensus 189 G~i~~~~p-~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~---------- 257 (324)
|.+....+ .|++.|.+...| ..+|++.+. .+.++|+++|+.+|.+|+.++...+..+.
T Consensus 127 g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~ 195 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIPPAG-TYNYWADSY----------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 195 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC----------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCC
T ss_pred ccccccCcchhhhhhcccchh-HHHHhccch----------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccc
Confidence 75422223 498876644333 345665442 24577888888899999876543322211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhh
Q 020599 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320 (324)
Q Consensus 258 ~~pGD~~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~ 320 (324)
...+|..||||++||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++++.
T Consensus 196 ~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 196 GGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp CCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred cccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 123467899998899999999888899999999999999999999999999999999998764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.6e-52 Score=388.38 Aligned_cols=179 Identities=39% Similarity=0.691 Sum_probs=115.1
Q ss_pred ccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccccccc
Q 020599 115 LWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193 (324)
Q Consensus 115 ~wy~~-~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~ 193 (324)
.+|++ +|++|+|+ .++|+||||++|||+|||||||++||++++|||++|||||||||||++|+++||+++..|.+
T Consensus 46 ~~~~~~~r~~~~pg--~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~-- 121 (251)
T 2wsc_4 46 SFKVEAKKGEWLPG--LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII-- 121 (251)
T ss_dssp -------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS--
T ss_pred cccCcchhhhccCC--CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc--
Confidence 58999 89999986 35999999999999999999999999999999999999999999999999999998877754
Q ss_pred CcchhhhcccccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCc-------c-CCCCCCC
Q 020599 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI-------F-LPGDINY 265 (324)
Q Consensus 194 ~~p~W~~aG~~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~-------~-~pGD~~y 265 (324)
..|.||++|.. +|++.+. .++++|+++|+.+|.+|+.++...++.+. . ..+|..|
T Consensus 122 ~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~y 184 (251)
T 2wsc_4 122 NVPKWYAAGKE-------EYFASSS----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 184 (251)
T ss_dssp CCCCCSCCCSS-------SCSSCSS----------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHS
T ss_pred CCccccccchH-------hhhccch----------HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccC
Confidence 34678876532 3444331 23467888888889998876543322221 1 1234579
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHHhhh
Q 020599 266 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMILVAA 320 (324)
Q Consensus 266 PGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle~~~ 320 (324)
|||+ |||||+.+ ++++|+|||||||| ||||+||++|+++||++|++++.
T Consensus 185 PGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~ 233 (251)
T 2wsc_4 185 PGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLL 233 (251)
T ss_dssp SCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTT
T ss_pred CCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHH
Confidence 9996 99999986 67899999999999 99999999999999999999864
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.2e-48 Score=362.76 Aligned_cols=178 Identities=42% Similarity=0.690 Sum_probs=128.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchh
Q 020599 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (324)
Q Consensus 119 ~~r~~wl~~~~~~~P~yLdGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~i~~~~p~W 198 (324)
..|+.|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++.. .|
T Consensus 43 sm~~~w~P~~--~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~--------~~ 112 (241)
T 2wsc_1 43 RMAAHWMPGE--PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG--------NW 112 (241)
T ss_dssp --------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC----------
T ss_pred ccccccCCCC--CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCC--------cc
Confidence 3455677754 4999999999999999999999999999999999999999999999999999986432 35
Q ss_pred hhccc-ccccCCcccccCCCcccccchhhHHHHHHHHHHHhhccchhhccCccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 020599 199 WRVGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (324)
Q Consensus 199 ~~aG~-~~~~g~~l~ylg~p~l~~ag~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLGL~ 277 (324)
++++. ..+++...+|++.|. .++.++.+.++|+++++.+|.+|..+. .+.+..|||| .|||||+.
T Consensus 113 ~~a~~~~~~~~g~a~~~~~~~----~~~~~~~i~~iq~l~ig~~E~~r~~~~---------~~~~~~yPgg-~fDPlgl~ 178 (241)
T 2wsc_1 113 VKAQEWAALPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYS 178 (241)
T ss_dssp ---CCCCSCSSCSSCCSSSCS----SSSSHHHHHHHHHHHTHHHHHHHTSCC---------SSCCSSSCSC-CSCSSSCS
T ss_pred ccccchhccCCcchhhhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCCCCCC-cccccccc
Confidence 54432 223444445665542 134567788899998888899886531 1235579999 69999999
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-hccCcchHHhhh
Q 020599 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGMILVAA 320 (324)
Q Consensus 278 kdpe~~~~lklkEIKNGRLAMlAilGfvaQa-~vTGkGPle~~~ 320 (324)
+|+++++++|++|||||||||+|++|+++|+ ++||+||++++.
T Consensus 179 ~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp CSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred cchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 9999999999999999999999999999999 689999998754
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.46 E-value=4.5e-14 Score=130.39 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccC
Q 020599 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (324)
Q Consensus 264 ~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTG 312 (324)
.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 4799999999999999999999999999999999999999999998753
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.44 E-value=4.8e-15 Score=138.30 Aligned_cols=54 Identities=37% Similarity=0.619 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchHH
Q 020599 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMIL 317 (324)
Q Consensus 264 ~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPle 317 (324)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++|+.|++.
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 589999999999999999999999999999999999999999999999987663
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.41 E-value=1.4e-14 Score=136.35 Aligned_cols=53 Identities=32% Similarity=0.514 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccCcchH
Q 020599 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGMI 316 (324)
Q Consensus 264 ~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vTGkGPl 316 (324)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.|.+
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 47899899999999999999999999999999999999999999999876544
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.39 E-value=1.6e-13 Score=127.38 Aligned_cols=51 Identities=39% Similarity=0.466 Sum_probs=47.5
Q ss_pred CCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccc
Q 020599 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (324)
Q Consensus 139 s~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G~ 190 (324)
.+|||+ ||||||++|+++++++|.+||||||+||+|++|+++||+++..|.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 589999 999999999999999999999999999999999999999876553
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.33 E-value=1.8e-13 Score=129.18 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.7
Q ss_pred CCCCCCCCCccCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 020599 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (324)
Q Consensus 137 dGs~pGD~GFDPLGLs~dpe~~~~yREAELKHGR~AMLAvvG~lvpEll~~~G 189 (324)
|..+|||++|||+||++|+++++++|++||||||+||||++|+++||+++..|
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 45689999999999999888899999999999999999999999999976544
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.31 E-value=1.8e-13 Score=127.05 Aligned_cols=48 Identities=35% Similarity=0.520 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 020599 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (324)
Q Consensus 264 ~yPGg~gFDPLGL~kdpe~~~~lklkEIKNGRLAMlAilGfvaQa~vT 311 (324)
.+|||++||||||++||++++++|..||||||+||+|++|+++|++++
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 579999999999999999999999999999999999999999999865
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=24.28 E-value=44 Score=20.35 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhh
Q 020599 155 PMAFQKYFNFEILHA 169 (324)
Q Consensus 155 pe~~~~yREAELKHG 169 (324)
++-+..+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 356788999999863
No 14
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=23.82 E-value=48 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.4
Q ss_pred CHHHHHHHHH--HHHhhhhHHHHHh
Q 020599 154 DPMAFQKYFN--FEILHARWAMLGA 176 (324)
Q Consensus 154 dpe~~~~yRE--AELKHGR~AMLAv 176 (324)
-|..+...+| ||..|.||||==+
T Consensus 23 L~~~le~lvE~LAen~H~~Wa~~r~ 47 (103)
T 3nrt_A 23 LPESLIQLSERIAENVHEVWAKARI 47 (103)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 8999999998553
Done!