BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020603
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNL 79
L +GPWT EED +I+ + ++ +W L+AK LK R GK CR RW N+L P+VK+ +
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 80 TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
T +E I E H GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 72 PDVKRGNLTPQEQMSILELHSKWGNR-WSKIAQHLPGRTDNEIKNYW 117
PD+ +G T +E ++EL K+G + W+ IA+HL GR + + W
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 49
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 97.8 bits (242), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
+L +GPWT EED +I+ + ++ RW+++AK LK R GK CR RW N+L P+VK+ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
T +E I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
+G T +E +++L K+G RWS IA+HL GR + + W + + +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 97.4 bits (241), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNL 79
L +GPWT EED +I+ + ++ RW+++AK LK R GK CR RW N+L P+VK+ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 80 TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
T +E I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
+G T +E +++L K+G RWS IA+HL GR + + W + + +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
+L +GPWT EED +I+ + ++ RW+++AK LK R GK CR RW N+L P+VK+ +
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 112
Query: 79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
T +E I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQM 85
WT EED L + + ++ W ++A RT C+ RW L P++ +G T +E
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 86 SILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQE 139
+++L K+G RWS IA+HL GR + + W HL + T++ E
Sbjct: 68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTE 115
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
+L +GPWT EED +I+++ ++ RW+ +AK LK R GK CR RW N+L P+VK+ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
T +E I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKN 115
RT C+ RW L P++ +G T +E ++E K+G RWS IA+HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 116 YWRTRVQKQARHLKIDANSTTFQE 139
W HL + T++ E
Sbjct: 68 RWHN-------HLNPEVKKTSWTE 84
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTP 81
+GP+T ED L+ +Y+ + W + S L R+ K CR RW N+L P V + TP
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRIT--SFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
+E +I + K G++WS IA+ +PGRTDN IKN W + + K+
Sbjct: 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
++ +T EED +L + +++H W ++A + R + CR RW NYL P + T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT 119
+E +++ ++G +W+ IA+ PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 27 TLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMS 86
T EED L Q + R+ W +++ + R + CR RW NY+ P ++ +P+E M
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 87 ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 129
+ + ++++G +W+KI++ L R+DN I+N W + +A+H K
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 52.0 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
VK+ + T +E I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 51.6 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 73 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
+VK+ + T +E + + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
L +GPWT EED LI+ + ++ RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
+G T +E +++L K+G RWS IA+HL GR + + W + +
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
L +GPWT EED +I+ + ++ RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.054, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
+G T +E ++EL K+G RWS IA+HL GR + + W + +
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
L +GPWT EED +I+ + ++ RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
+G T +E +++L K+G RWS IA+HL GR + + W + +
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric
Repeat-Binding Protein Dna Binding Domain
Length = 105
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 15 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRW---NLLAKRSGLKRTGKSCRLRWLNY-- 69
E+ ++RR P+++ E L+Q + + GRW L A RT + +W
Sbjct: 6 EDPQRRIRR-PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64
Query: 70 ---LKPDVKRGNLTPQEQMS-ILELHSKW 94
+ P +RG PQE ++ +L H W
Sbjct: 65 TAKISPQQRRGEPVPQELLNRVLNAHGYW 93
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 42 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 88
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 34 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 80
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
W ED +L + ++ + +W+ +A +++ K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 24 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 70
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 22 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 68
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 38 ISRHSEGRWNLLAKR----SGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
+S+H + N+ AKR SGL G +LR L Y+ PD+ G+ T
Sbjct: 24 LSQHLGSKVNVYAKREDCNSGLAFGGN--KLRKLEYIVPDIVEGDYT 68
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 22 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 68
>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant, R492l,
Of Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 22 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 68
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 22 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 68
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 38 ISRHSEGRWNLLAKR----SGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
+S+H + N+ AKR SGL G +LR L Y+ PD+ G+ T
Sbjct: 24 LSQHLGSKVNVYAKREDCNSGLAFGGN--KLRKLEYIVPDIVEGDYT 68
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 273 DMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADI 320
D++ IS PETM A L G F+N V ++ +VD + G+ T ++
Sbjct: 22 DLKYIS-PETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNL 68
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123
G TP+E + EL K GN W+ I L GR+ + +K+ R R+ K
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD--RCRLMK 67
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 96 NRWSKIAQHLPGRTDNEIKNYW 117
+RW K+AQ++ GRT E+K ++
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 92 SKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
+K+G RW+KI++ + RT ++K+Y R + + +
Sbjct: 25 AKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 254 SSEYNTFAKDFCQFDSNCYDMENISQPETMPA 285
+S +N + K++C N N+ PETMP+
Sbjct: 248 ASGFNYYLKNYCNVSYNPIMGSNLKMPETMPS 279
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 254 SSEYNTFAKDFCQFDSNCYDMENISQPETMPA 285
+S +N + K++C N N+ PETMP+
Sbjct: 225 ASGFNYYLKNYCNVSYNPIMGSNLKMPETMPS 256
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70
WT EED L + + + W LA RT + C+ RWL L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 260 FAKDFCQFDSNCYDMENISQ---PETMPAPLAGDFNNW 294
F+K + +F N D I + P A L G+FNNW
Sbjct: 51 FSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNW 88
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 260 FAKDFCQFDSNCYDMENISQ---PETMPAPLAGDFNNW 294
F+K + +F N D I + P A L G+FNNW
Sbjct: 51 FSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNW 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,768,045
Number of Sequences: 62578
Number of extensions: 377201
Number of successful extensions: 800
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 52
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)