Query 020603
Match_columns 324
No_of_seqs 289 out of 1444
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 3.7E-36 1.3E-40 253.0 9.5 123 1-124 5-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 2E-34 6.8E-39 234.3 9.7 104 20-124 1-104 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-34 8.8E-39 235.1 10.3 105 23-128 1-105 (107)
4 3osg_A MYB21; transcription-DN 100.0 2.6E-33 8.9E-38 235.5 10.8 105 17-123 5-109 (126)
5 1h89_C C-MYB, MYB proto-oncoge 100.0 1.2E-33 4E-38 245.6 8.5 122 2-124 37-158 (159)
6 3zqc_A MYB3; transcription-DNA 100.0 1.4E-33 4.9E-38 238.4 7.4 107 22-129 1-107 (131)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.7E-31 1.9E-35 228.7 3.9 112 20-132 3-115 (159)
8 2dim_A Cell division cycle 5-l 99.8 2.3E-22 7.7E-27 152.7 3.7 67 17-84 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.5E-22 2.2E-26 166.0 4.6 83 49-132 1-84 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 4.2E-19 1.5E-23 163.1 7.1 106 18-124 3-200 (246)
11 2juh_A Telomere binding protei 99.7 1E-18 3.5E-23 146.2 3.8 84 16-100 10-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 2.3E-18 8E-23 132.3 5.0 58 63-121 10-67 (73)
13 2d9a_A B-MYB, MYB-related prot 99.7 6.4E-18 2.2E-22 124.3 4.8 57 18-75 3-59 (60)
14 2roh_A RTBP1, telomere binding 99.7 8E-18 2.7E-22 141.0 6.0 80 17-97 25-114 (122)
15 2din_A Cell division cycle 5-l 99.7 2.2E-17 7.6E-22 123.7 7.6 61 69-130 2-62 (66)
16 1gvd_A MYB proto-oncogene prot 99.7 7.8E-18 2.7E-22 120.4 3.5 52 21-73 1-52 (52)
17 2cu7_A KIAA1915 protein; nucle 99.7 2.9E-17 9.8E-22 125.3 6.6 62 70-132 3-64 (72)
18 1ity_A TRF1; helix-turn-helix, 99.7 1.7E-17 5.8E-22 125.5 4.4 65 16-80 3-68 (69)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 1.2E-17 4E-22 119.4 3.0 52 21-73 1-52 (52)
20 2d9a_A B-MYB, MYB-related prot 99.6 8.2E-17 2.8E-21 118.3 4.3 54 71-124 3-57 (60)
21 3zqc_A MYB3; transcription-DNA 99.6 9.7E-18 3.3E-22 141.3 -1.6 98 2-105 33-130 (131)
22 2dim_A Cell division cycle 5-l 99.6 1.7E-16 5.7E-21 120.2 5.0 63 71-133 4-67 (70)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 2.5E-16 8.5E-21 112.5 5.6 50 74-123 1-51 (52)
24 3sjm_A Telomeric repeat-bindin 99.6 8.8E-17 3E-21 120.4 3.4 57 19-75 7-64 (64)
25 1x41_A Transcriptional adaptor 99.6 2E-16 6.9E-21 116.6 4.5 55 18-73 3-57 (60)
26 1gvd_A MYB proto-oncogene prot 99.6 4.4E-16 1.5E-20 111.3 5.3 50 74-123 1-51 (52)
27 1ity_A TRF1; helix-turn-helix, 99.6 7.7E-16 2.6E-20 116.3 6.1 60 69-128 3-65 (69)
28 2din_A Cell division cycle 5-l 99.6 1.2E-16 4.2E-21 119.6 1.4 60 16-78 2-61 (66)
29 1w0t_A Telomeric repeat bindin 99.6 1.4E-15 4.7E-20 109.3 5.9 49 75-123 1-52 (53)
30 1x41_A Transcriptional adaptor 99.6 2E-15 6.8E-20 111.3 6.5 52 72-123 4-56 (60)
31 1w0t_A Telomeric repeat bindin 99.6 7.6E-16 2.6E-20 110.6 3.3 50 22-71 1-51 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.6 6.3E-16 2.2E-20 118.4 3.0 62 17-79 2-68 (75)
33 2elk_A SPCC24B10.08C protein; 99.6 1.2E-15 4E-20 111.9 4.3 53 18-70 4-56 (58)
34 3sjm_A Telomeric repeat-bindin 99.5 3.3E-15 1.1E-19 111.8 5.2 51 74-124 9-62 (64)
35 2yum_A ZZZ3 protein, zinc fing 99.5 3.2E-15 1.1E-19 114.5 4.8 57 71-127 3-65 (75)
36 2cu7_A KIAA1915 protein; nucle 99.5 1.9E-15 6.6E-20 115.1 3.1 58 17-76 3-60 (72)
37 2elk_A SPCC24B10.08C protein; 99.5 1.2E-14 4E-19 106.6 6.6 50 72-121 5-56 (58)
38 1gv2_A C-MYB, MYB proto-oncoge 99.5 2.2E-15 7.4E-20 121.9 2.4 70 2-73 35-104 (105)
39 2llk_A Cyclin-D-binding MYB-li 99.5 6.6E-15 2.2E-19 113.1 4.3 64 9-76 9-72 (73)
40 2k9n_A MYB24; R2R3 domain, DNA 99.5 2E-15 6.9E-20 122.9 0.8 70 1-72 31-100 (107)
41 2ltp_A Nuclear receptor corepr 99.2 2.9E-15 9.9E-20 118.9 0.0 56 69-124 9-64 (89)
42 3osg_A MYB21; transcription-DN 99.5 5.8E-15 2E-19 123.6 1.4 68 2-71 41-108 (126)
43 2ckx_A NGTRF1, telomere bindin 99.4 5.6E-14 1.9E-18 110.3 5.4 69 24-93 1-79 (83)
44 2aje_A Telomere repeat-binding 99.4 3E-14 1E-18 116.5 3.7 78 17-95 7-94 (105)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.4E-13 8.3E-18 104.3 5.4 51 72-122 14-68 (73)
46 2yus_A SWI/SNF-related matrix- 99.4 2.9E-13 9.9E-18 105.3 5.0 51 17-69 12-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.4 3.8E-13 1.3E-17 104.6 5.1 48 73-120 15-62 (79)
48 2ltp_A Nuclear receptor corepr 99.0 1.1E-13 3.8E-18 109.7 0.0 55 16-72 9-63 (89)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.6E-13 1.2E-17 103.4 2.4 57 14-71 9-68 (73)
50 2ckx_A NGTRF1, telomere bindin 99.3 3.6E-12 1.2E-16 100.0 6.7 48 77-124 1-53 (83)
51 1x58_A Hypothetical protein 49 99.3 5.1E-12 1.7E-16 93.8 6.0 49 75-123 7-58 (62)
52 2juh_A Telomere binding protei 99.2 6.5E-12 2.2E-16 105.0 6.0 54 70-123 11-69 (121)
53 2aje_A Telomere repeat-binding 99.2 1E-11 3.4E-16 101.5 6.7 52 72-123 9-65 (105)
54 1ign_A Protein (RAP1); RAP1,ye 99.2 3.7E-12 1.3E-16 117.1 3.8 55 72-126 4-64 (246)
55 2cjj_A Radialis; plant develop 99.2 2E-11 6.9E-16 97.7 7.4 50 75-124 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 3.2E-11 1.1E-15 101.0 6.9 53 72-124 27-84 (122)
57 2cjj_A Radialis; plant develop 99.0 5.8E-11 2E-15 95.0 2.3 48 22-70 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 5.7E-10 1.9E-14 82.3 6.3 46 75-120 11-56 (61)
59 3hm5_A DNA methyltransferase 1 99.0 6E-10 2E-14 89.1 6.7 66 60-129 18-88 (93)
60 1x58_A Hypothetical protein 49 98.8 7.3E-10 2.5E-14 82.2 2.1 50 20-71 5-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.8 3.8E-09 1.3E-13 80.7 5.8 50 73-123 5-58 (72)
62 2iw5_B Protein corest, REST co 98.8 4.5E-09 1.5E-13 96.0 6.7 49 75-123 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.8 2.8E-09 9.6E-14 78.6 4.3 51 17-69 6-56 (61)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.2E-08 4.1E-13 77.9 2.7 50 20-71 5-57 (72)
65 2xag_B REST corepressor 1; ami 98.6 3E-08 1E-12 99.4 4.9 44 77-120 381-424 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.5 7.5E-08 2.6E-12 73.7 4.8 47 76-122 8-58 (73)
67 1fex_A TRF2-interacting telome 98.5 2.9E-08 1E-12 72.9 2.1 48 23-71 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.5 4.7E-08 1.6E-12 74.8 3.0 49 23-72 8-59 (73)
69 1fex_A TRF2-interacting telome 98.4 2.1E-07 7E-12 68.4 4.4 47 76-122 2-58 (59)
70 2iw5_B Protein corest, REST co 98.4 1.8E-07 6.1E-12 85.5 4.7 53 17-71 127-179 (235)
71 1ofc_X ISWI protein; nuclear p 98.1 5.2E-06 1.8E-10 79.1 8.7 104 23-127 110-279 (304)
72 2yqk_A Arginine-glutamic acid 98.1 5.1E-06 1.7E-10 61.5 6.6 48 72-119 5-53 (63)
73 1ug2_A 2610100B20RIK gene prod 98.1 7.6E-06 2.6E-10 64.8 7.2 47 78-124 35-84 (95)
74 4eef_G F-HB80.4, designed hema 98.0 1.7E-06 5.9E-11 66.0 1.4 43 76-118 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.2 1E-06 3.5E-11 66.3 0.0 45 78-123 16-63 (70)
76 4iej_A DNA methyltransferase 1 98.0 2.3E-05 7.9E-10 62.4 7.8 60 65-128 23-87 (93)
77 4eef_G F-HB80.4, designed hema 98.0 8.4E-07 2.9E-11 67.8 -0.5 44 23-67 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.7 2.1E-05 7.2E-10 58.1 4.0 50 17-68 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.7 5.5E-05 1.9E-09 60.2 6.1 44 76-119 43-86 (94)
80 2crg_A Metastasis associated p 97.7 8.5E-05 2.9E-09 56.0 6.3 44 76-119 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.6 3.6E-05 1.2E-09 77.3 4.6 51 17-69 374-424 (482)
82 3hm5_A DNA methyltransferase 1 97.6 3.7E-05 1.2E-09 61.3 3.3 49 22-71 29-81 (93)
83 2ebi_A DNA binding protein GT- 97.3 4E-05 1.4E-09 59.5 0.7 50 22-71 3-64 (86)
84 2ebi_A DNA binding protein GT- 97.3 0.00022 7.6E-09 55.2 4.3 49 75-123 3-65 (86)
85 4b4c_A Chromodomain-helicase-D 97.2 0.0013 4.5E-08 58.4 9.6 104 20-123 4-196 (211)
86 4a69_C Nuclear receptor corepr 97.2 0.00018 6.1E-09 57.3 3.1 43 23-67 43-85 (94)
87 2crg_A Metastasis associated p 97.1 0.00024 8.2E-09 53.5 3.0 44 22-67 7-51 (70)
88 2y9y_A Imitation switch protei 97.0 0.0013 4.5E-08 64.1 8.1 105 24-128 124-296 (374)
89 1ug2_A 2610100B20RIK gene prod 96.7 0.0016 5.4E-08 51.6 4.5 52 17-69 27-80 (95)
90 2lr8_A CAsp8-associated protei 95.3 0.00067 2.3E-08 51.0 0.0 48 22-71 13-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 95.3 0.052 1.8E-06 40.2 6.8 48 75-122 6-58 (64)
92 4iej_A DNA methyltransferase 1 95.2 0.014 4.8E-07 46.4 3.5 49 21-70 28-80 (93)
93 4b4c_A Chromodomain-helicase-D 92.6 0.21 7.1E-06 44.0 6.4 49 75-123 6-59 (211)
94 1ofc_X ISWI protein; nuclear p 92.2 0.2 7E-06 47.5 6.2 47 77-123 111-158 (304)
95 2xb0_X Chromo domain-containin 91.1 0.15 5.2E-06 47.6 3.9 29 24-52 169-197 (270)
96 1irz_A ARR10-B; helix-turn-hel 90.5 0.28 9.7E-06 36.2 4.1 50 19-68 3-55 (64)
97 2xb0_X Chromo domain-containin 83.0 2.3 8E-05 39.5 6.7 48 76-123 3-55 (270)
98 2rq5_A Protein jumonji; develo 72.3 2 6.7E-05 35.3 2.5 57 33-92 46-113 (121)
99 2y9y_A Imitation switch protei 70.5 3.9 0.00013 39.8 4.5 33 22-54 227-262 (374)
100 3cz6_A DNA-binding protein RAP 67.7 6 0.00021 34.3 4.6 31 18-51 109-147 (168)
101 2o8x_A Probable RNA polymerase 66.7 11 0.00037 26.1 5.2 43 79-123 16-58 (70)
102 2lm1_A Lysine-specific demethy 65.6 10 0.00035 29.7 5.4 39 86-124 48-98 (107)
103 2jrz_A Histone demethylase jar 64.8 8.9 0.0003 30.8 5.0 39 86-124 44-94 (117)
104 2li6_A SWI/SNF chromatin-remod 64.6 5 0.00017 32.3 3.4 40 86-125 53-100 (116)
105 1kkx_A Transcription regulator 64.6 6.6 0.00023 32.1 4.2 41 86-126 52-100 (123)
106 1ku3_A Sigma factor SIGA; heli 63.0 14 0.00047 26.3 5.3 44 79-124 11-58 (73)
107 2li6_A SWI/SNF chromatin-remod 62.1 2.8 9.7E-05 33.8 1.5 39 33-72 53-98 (116)
108 2eqy_A RBP2 like, jumonji, at 61.3 12 0.00041 30.3 5.1 39 86-124 46-96 (122)
109 1c20_A DEAD ringer protein; DN 61.0 19 0.00067 29.2 6.4 43 85-127 55-110 (128)
110 2cxy_A BAF250B subunit, HBAF25 60.8 12 0.00041 30.4 5.1 40 86-125 55-106 (125)
111 1ig6_A MRF-2, modulator recogn 58.2 4.5 0.00015 31.9 2.0 40 33-72 37-87 (107)
112 2kk0_A AT-rich interactive dom 57.9 23 0.0008 29.5 6.5 42 86-127 68-122 (145)
113 2p7v_B Sigma-70, RNA polymeras 57.9 15 0.0005 25.8 4.6 43 79-123 6-52 (68)
114 1wxp_A THO complex subunit 1; 56.7 43 0.0015 26.2 7.6 60 84-144 18-87 (110)
115 2jrz_A Histone demethylase jar 55.4 4.2 0.00014 32.8 1.4 40 33-72 44-93 (117)
116 2kk0_A AT-rich interactive dom 54.4 9.8 0.00034 31.8 3.6 56 33-88 68-136 (145)
117 1c20_A DEAD ringer protein; DN 53.3 4.4 0.00015 33.1 1.2 40 33-72 56-106 (128)
118 2rq5_A Protein jumonji; develo 51.7 19 0.00066 29.3 4.8 40 86-125 46-98 (121)
119 2jvw_A Uncharacterized protein 51.7 9.1 0.00031 29.7 2.6 45 31-88 18-69 (88)
120 2jxj_A Histone demethylase jar 51.6 5.3 0.00018 30.8 1.4 40 33-72 40-89 (96)
121 2jxj_A Histone demethylase jar 51.3 8.7 0.0003 29.6 2.6 39 86-124 40-90 (96)
122 3hug_A RNA polymerase sigma fa 50.9 33 0.0011 25.4 5.8 41 82-123 40-80 (92)
123 2cxy_A BAF250B subunit, HBAF25 49.9 5.2 0.00018 32.6 1.1 40 33-72 55-104 (125)
124 2lm1_A Lysine-specific demethy 47.3 5.5 0.00019 31.3 0.9 40 33-72 48-97 (107)
125 2eqy_A RBP2 like, jumonji, at 46.8 6.8 0.00023 31.8 1.4 40 33-72 46-95 (122)
126 1x3u_A Transcriptional regulat 43.7 50 0.0017 23.2 5.6 42 79-123 17-58 (79)
127 1or7_A Sigma-24, RNA polymeras 42.3 53 0.0018 26.8 6.3 30 93-123 154-183 (194)
128 3ulq_B Transcriptional regulat 42.1 58 0.002 24.4 6.0 45 76-123 27-71 (90)
129 1ig6_A MRF-2, modulator recogn 41.0 18 0.0006 28.4 2.9 38 86-123 37-87 (107)
130 1tty_A Sigma-A, RNA polymerase 40.6 49 0.0017 24.3 5.3 43 79-123 19-65 (87)
131 1k78_A Paired box protein PAX5 39.4 1.4E+02 0.0048 23.5 8.6 67 23-94 30-106 (149)
132 2yqf_A Ankyrin-1; death domain 39.1 95 0.0032 24.2 7.0 73 80-153 14-97 (111)
133 1fse_A GERE; helix-turn-helix 37.6 85 0.0029 21.5 6.0 44 77-123 10-53 (74)
134 1je8_A Nitrate/nitrite respons 37.2 64 0.0022 23.4 5.4 43 78-123 21-63 (82)
135 1kkx_A Transcription regulator 36.8 4.3 0.00015 33.2 -1.4 39 33-72 52-97 (123)
136 3c57_A Two component transcrip 36.5 65 0.0022 24.1 5.5 43 78-123 27-69 (95)
137 3e7l_A Transcriptional regulat 36.2 56 0.0019 22.7 4.7 42 81-131 18-59 (63)
138 3i4p_A Transcriptional regulat 34.8 54 0.0019 26.9 5.2 43 82-125 3-46 (162)
139 2p1m_A SKP1-like protein 1A; F 34.5 20 0.00069 30.0 2.4 35 47-89 119-153 (160)
140 1ntc_A Protein (nitrogen regul 34.4 65 0.0022 24.1 5.1 35 81-116 50-84 (91)
141 1xsv_A Hypothetical UPF0122 pr 33.2 85 0.0029 24.5 5.8 40 83-123 29-68 (113)
142 3e7l_A Transcriptional regulat 33.0 33 0.0011 24.0 3.0 30 29-59 19-48 (63)
143 3i4p_A Transcriptional regulat 32.4 15 0.00052 30.4 1.3 42 29-72 3-44 (162)
144 1rp3_A RNA polymerase sigma fa 30.8 1E+02 0.0035 25.7 6.4 36 87-123 195-230 (239)
145 3mzy_A RNA polymerase sigma-H 30.1 91 0.0031 24.2 5.6 30 93-123 122-151 (164)
146 2jpc_A SSRB; DNA binding prote 30.1 91 0.0031 20.7 4.9 38 84-123 3-40 (61)
147 2q1z_A RPOE, ECF SIGE; ECF sig 29.8 34 0.0012 27.8 3.0 30 93-123 149-178 (184)
148 1u78_A TC3 transposase, transp 29.7 1.9E+02 0.0064 22.1 10.0 88 23-115 4-98 (141)
149 2of5_H Leucine-rich repeat and 29.5 64 0.0022 25.6 4.5 30 84-114 13-42 (118)
150 3cz6_A DNA-binding protein RAP 28.8 44 0.0015 28.8 3.6 17 72-88 110-126 (168)
151 1p4w_A RCSB; solution structur 27.2 1.3E+02 0.0045 22.9 5.9 45 76-123 32-76 (99)
152 2ib1_A Death domain containing 26.7 1.2E+02 0.004 23.1 5.4 33 81-115 5-37 (91)
153 2of5_A Death domain-containing 26.4 76 0.0026 25.3 4.4 38 73-114 16-53 (114)
154 2rnj_A Response regulator prot 26.4 81 0.0028 23.2 4.4 43 78-123 29-71 (91)
155 2dbb_A Putative HTH-type trans 26.2 1.4E+02 0.0047 23.7 6.1 43 82-125 9-52 (151)
156 2o71_A Death domain-containing 26.1 80 0.0027 25.2 4.5 36 74-113 17-52 (115)
157 1k78_A Paired box protein PAX5 25.5 1.9E+02 0.0067 22.6 6.9 39 76-116 30-68 (149)
158 3v7d_A Suppressor of kinetocho 25.4 30 0.001 29.3 2.0 36 46-89 126-161 (169)
159 2k27_A Paired box protein PAX- 25.0 2.6E+02 0.0089 22.2 10.9 70 23-94 23-99 (159)
160 2ast_A S-phase kinase-associat 23.8 32 0.0011 28.6 1.8 35 47-89 120-154 (159)
161 1umq_A Photosynthetic apparatu 23.7 83 0.0028 23.6 4.0 33 81-114 40-72 (81)
162 1tc3_C Protein (TC3 transposas 23.6 1.3E+02 0.0044 18.2 5.6 38 78-117 5-42 (51)
163 4ayb_F DNA-directed RNA polyme 23.6 1.5E+02 0.005 23.5 5.7 66 22-94 43-110 (113)
164 2e1c_A Putative HTH-type trans 22.8 1.2E+02 0.0043 25.1 5.4 42 82-124 27-69 (171)
165 1s7o_A Hypothetical UPF0122 pr 21.8 1.4E+02 0.0049 23.2 5.3 44 78-123 22-65 (113)
166 2cyy_A Putative HTH-type trans 21.3 1.6E+02 0.0054 23.5 5.6 43 82-125 7-50 (151)
167 2e1c_A Putative HTH-type trans 21.2 47 0.0016 27.8 2.3 41 29-71 27-67 (171)
168 1g2h_A Transcriptional regulat 20.7 83 0.0028 21.8 3.2 33 25-59 17-49 (61)
169 1ntc_A Protein (nitrogen regul 20.5 63 0.0022 24.2 2.7 30 29-59 51-80 (91)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.7e-36 Score=252.99 Aligned_cols=123 Identities=37% Similarity=0.710 Sum_probs=103.2
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCC
Q 020603 1 MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80 (324)
Q Consensus 1 m~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT 80 (324)
|-.++..+|..+|.+..+|.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||
T Consensus 5 ~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 5 IKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCC
Confidence 346788999999999999999999999999999999999999888999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
+|||++|+++|.+||++|..||+.|||||+++|++||+.+++++
T Consensus 84 ~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988764
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2e-34 Score=234.32 Aligned_cols=104 Identities=44% Similarity=0.868 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChH
Q 020603 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWS 99 (324)
Q Consensus 20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs 99 (324)
.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 100 KIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 100 ~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.||+.|||||++||++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.6e-34 Score=235.13 Aligned_cols=105 Identities=30% Similarity=0.605 Sum_probs=101.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHH
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIA 102 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA 102 (324)
||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhc
Q 020603 103 QHLPGRTDNEIKNYWRTRVQKQARHL 128 (324)
Q Consensus 103 ~~lpgRT~~qcknRW~~~lkk~~r~~ 128 (324)
+.|||||+++|++||+.++++..++.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999998876543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.6e-33 Score=235.48 Aligned_cols=105 Identities=32% Similarity=0.663 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN 96 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 96 (324)
.+...++|+||+|||++|+++|++||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999998 9999999999 99999999999999999999999999999999999999999
Q ss_pred ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 97 RWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 97 kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+|..||+.|+|||+++||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988776
No 5
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.2e-33 Score=245.63 Aligned_cols=122 Identities=38% Similarity=0.726 Sum_probs=112.8
Q ss_pred CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCH
Q 020603 2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81 (324)
Q Consensus 2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~ 81 (324)
..++..+|..+|.+..+|.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+
T Consensus 37 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 37 PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 115 (159)
T ss_dssp ------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCCh
Confidence 35778899999999999999999999999999999999999878999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 82 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
|||++|++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus 116 eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.4e-33 Score=238.39 Aligned_cols=107 Identities=36% Similarity=0.688 Sum_probs=102.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHH
Q 020603 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKI 101 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~I 101 (324)
.||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 479999999999999999999889999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 020603 102 AQHLPGRTDNEIKNYWRTRVQKQARHLK 129 (324)
Q Consensus 102 A~~lpgRT~~qcknRW~~~lkk~~r~~~ 129 (324)
|++|+|||+++|++||+.+|++.+....
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999998765543
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.7e-31 Score=228.72 Aligned_cols=112 Identities=29% Similarity=0.634 Sum_probs=66.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC-Ch
Q 020603 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN-RW 98 (324)
Q Consensus 20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kW 98 (324)
.+++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999999 99999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 020603 99 SKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDA 132 (324)
Q Consensus 99 s~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~ 132 (324)
..||+.|+|||+.||++||.++|.+.+++...+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence 9999999999999999999999988765554443
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-22 Score=152.65 Aligned_cols=67 Identities=21% Similarity=0.557 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHH
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQ 84 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED 84 (324)
..+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999779999999999 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=6.5e-22 Score=166.03 Aligned_cols=83 Identities=28% Similarity=0.627 Sum_probs=56.6
Q ss_pred HHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603 49 LAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQKQARH 127 (324)
Q Consensus 49 IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~ 127 (324)
||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 789999 99999999999999999999999999999999999999995 6999999999999999999999999887665
Q ss_pred cCCCC
Q 020603 128 LKIDA 132 (324)
Q Consensus 128 ~~~~~ 132 (324)
...+.
T Consensus 80 ~~WT~ 84 (128)
T 1h8a_C 80 TSWTE 84 (128)
T ss_dssp SCCCH
T ss_pred ccCCH
Confidence 55443
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=4.2e-19 Score=163.09 Aligned_cols=106 Identities=17% Similarity=0.324 Sum_probs=92.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHHHHhCCCCCcccccceeeccccCCCc-----------------
Q 020603 18 SDQLRRGPWTLEEDTLLIQYISRHSEGR-----WNLLAKRSGLKRTGKSCRLRWLNYLKPDVK----------------- 75 (324)
Q Consensus 18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~-----W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ik----------------- 75 (324)
.+.++|++||+|||++|+++|+++|..+ |.+||+.|+ |||+.|||.||+.+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998743 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHhh-c--------------------------------CC--------------
Q 020603 76 ------------RGNLTPQEQMSILELHSK-W--------------------------------GN-------------- 96 (324)
Q Consensus 76 ------------kg~WT~EED~~Ll~lv~~-~--------------------------------G~-------------- 96 (324)
+..||.|||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999876 1 11
Q ss_pred -----------ChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 97 -----------RWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 97 -----------kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.|.+||+.+|+||.+.+|+||+.+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999988763
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=1e-18 Score=146.18 Aligned_cols=84 Identities=23% Similarity=0.447 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeecccc-----CCCcCC-CCCHHHHH
Q 020603 16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYLK-----PDVKRG-NLTPQEQM 85 (324)
Q Consensus 16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L~-----p~ikkg-~WT~EED~ 85 (324)
..++..++++||+|||++|+++|++||.++|..|++.+ + +||..||++||+++|+ |.++++ +|+++|+.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 36778999999999999999999999999999999986 5 8999999999999998 999999 99999999
Q ss_pred HHHHHHhhcCCChHH
Q 020603 86 SILELHSKWGNRWSK 100 (324)
Q Consensus 86 ~Ll~lv~~~G~kWs~ 100 (324)
+|++++..+|++|.+
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 999999999999976
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=132.30 Aligned_cols=58 Identities=29% Similarity=0.431 Sum_probs=47.3
Q ss_pred cceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHH
Q 020603 63 RLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRV 121 (324)
Q Consensus 63 r~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~l 121 (324)
--||.++|+|++++++||+|||++|+++|++||++|++||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999999643
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.4e-18 Score=124.28 Aligned_cols=57 Identities=30% Similarity=0.557 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCc
Q 020603 18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVK 75 (324)
Q Consensus 18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ik 75 (324)
.|.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999779999999999 99999999999999999875
No 14
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=8e-18 Score=140.99 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeeccc-----cCCCcCCCCCHHH-HHH
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYL-----KPDVKRGNLTPQE-QMS 86 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L-----~p~ikkg~WT~EE-D~~ 86 (324)
.....++++||+|||+.|+++|++||.++|..|++.+ + +||..||++||++++ +|.++++.|+++| +++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 4567789999999999999999999999999999975 5 899999999999999 7999999999999 899
Q ss_pred HHHHHhhcCCC
Q 020603 87 ILELHSKWGNR 97 (324)
Q Consensus 87 Ll~lv~~~G~k 97 (324)
|++++..||++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999974
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=123.68 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=57.7
Q ss_pred cccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 020603 69 YLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKI 130 (324)
Q Consensus 69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~ 130 (324)
+|+|.+++++||+|||++|+++|++||.+|.+||+ |+|||++|||+||+.+|++.+++..-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999998887643
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=7.8e-18 Score=120.43 Aligned_cols=52 Identities=46% Similarity=0.912 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73 (324)
Q Consensus 21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 73 (324)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999878999999999 999999999999999984
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=2.9e-17 Score=125.26 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=57.3
Q ss_pred ccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 020603 70 LKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDA 132 (324)
Q Consensus 70 L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~ 132 (324)
++|.+++++||+|||++|+++|.+||.+|..||++|+|||++|||+||+.++++.++. ++++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~ 64 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK 64 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 5789999999999999999999999999999999999999999999999999997766 5544
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.7e-17 Score=125.45 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeeccccCCCcCCCCC
Q 020603 16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLKPDVKRGNLT 80 (324)
Q Consensus 16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~p~ikkg~WT 80 (324)
..++..++++||+|||++|+++|++||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4677889999999999999999999998899999999986 8999999999999999999987754
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=1.2e-17 Score=119.39 Aligned_cols=52 Identities=31% Similarity=0.670 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73 (324)
Q Consensus 21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 73 (324)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999999 999999999999999984
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=8.2e-17 Score=118.33 Aligned_cols=54 Identities=22% Similarity=0.440 Sum_probs=50.7
Q ss_pred cCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 71 KPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 71 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 4778999999999999999999999 69999999999999999999999988764
No 21
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.63 E-value=9.7e-18 Score=141.30 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=76.3
Q ss_pred CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCH
Q 020603 2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81 (324)
Q Consensus 2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~ 81 (324)
-.++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ ||+..||+.||.++|++.+..+.|+.
T Consensus 33 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 33 PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 357888999999999999999999999999999999999996 8999999999 99999999999999999999999886
Q ss_pred HHHHHHHHHHhhcCCChHHHHhhC
Q 020603 82 QEQMSILELHSKWGNRWSKIAQHL 105 (324)
Q Consensus 82 EED~~Ll~lv~~~G~kWs~IA~~l 105 (324)
+- +......+.+|..|++.|
T Consensus 111 ~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 111 EI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CC----CCCCCC------------
T ss_pred cc----cCchhhhhhhhhhcchhc
Confidence 53 111123345688888766
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=120.22 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=57.3
Q ss_pred cCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 020603 71 KPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 133 (324)
Q Consensus 71 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~ 133 (324)
.+.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.+++..++..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4678999999999999999999999 79999999999999999999999999998777665543
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2.5e-16 Score=112.48 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=46.2
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 74 VKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 74 ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999998864
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=8.8e-17 Score=120.41 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeeccccCCCc
Q 020603 19 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLKPDVK 75 (324)
Q Consensus 19 ~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~p~ik 75 (324)
...+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||++++++.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4468999999999999999999998899999998653 79999999999999998764
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2e-16 Score=116.59 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603 18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73 (324)
Q Consensus 18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 73 (324)
.+.+++++||+|||++|+++|++||.++|.+||+.|+ +|++.|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 4679999999999999999999999779999999999 999999999999999864
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=4.4e-16 Score=111.29 Aligned_cols=50 Identities=32% Similarity=0.699 Sum_probs=46.9
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 74 VKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 74 ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999998864
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=7.7e-16 Score=116.32 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=54.2
Q ss_pred cccCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhc
Q 020603 69 YLKPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKQARHL 128 (324)
Q Consensus 69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk~~r~~ 128 (324)
...+..++++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||+++|++.+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 345677899999999999999999999 79999999999 9999999999999999866544
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-16 Score=119.61 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCC
Q 020603 16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGN 78 (324)
Q Consensus 16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~ 78 (324)
+++|.+++++||+|||++|+++|+.+|. +|.+||+ ++ +|++.|||.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 4789999999999999999999999998 9999999 77 79999999999999999776653
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.4e-15 Score=109.28 Aligned_cols=49 Identities=33% Similarity=0.464 Sum_probs=46.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk 123 (324)
++++||+|||++|+++|.+|| ++|..||+.|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998864
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2e-15 Score=111.25 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=48.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||.++|..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 568899999999999999999999 7999999999999999999999987753
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=7.6e-16 Score=110.63 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeecccc
Q 020603 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLK 71 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~ 71 (324)
++|+||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999986 6999999999999875
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.3e-16 Score=118.41 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHHHHhCCCCCcccccceeeccccCCCcCCCC
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSE-----GRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~-----~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~W 79 (324)
.+|.+++++||+|||++|+++|.+||. .+|.+||+.|+ +||..||+.||+++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 368899999999999999999999995 68999999999 999999999999999988777643
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=1.2e-15 Score=111.88 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc
Q 020603 18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70 (324)
Q Consensus 18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L 70 (324)
...+.+++||+|||++|+++|++||.++|..||+.|+.+|+++|||+||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 34577999999999999999999998899999999987899999999999875
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=3.3e-15 Score=111.79 Aligned_cols=51 Identities=29% Similarity=0.476 Sum_probs=46.3
Q ss_pred CcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 020603 74 VKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 74 ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk~ 124 (324)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999865 999999999999988763
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=114.48 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=52.4
Q ss_pred cCCCcCCCCCHHHHHHHHHHHhhcC------CChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603 71 KPDVKRGNLTPQEQMSILELHSKWG------NRWSKIAQHLPGRTDNEIKNYWRTRVQKQARH 127 (324)
Q Consensus 71 ~p~ikkg~WT~EED~~Ll~lv~~~G------~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~ 127 (324)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999 78999999999999999999999988875544
No 36
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.54 E-value=1.9e-15 Score=115.08 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcC
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikk 76 (324)
..|.+++++||+|||++|+++|++||. +|..||+.|+ +||..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999998 9999999999 999999999999999876665
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=1.2e-14 Score=106.56 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=46.1
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC-CCCHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP-GRTDNEIKNYWRTRV 121 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~qcknRW~~~l 121 (324)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998764
No 38
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.52 E-value=2.2e-15 Score=121.88 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=64.5
Q ss_pred CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603 2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73 (324)
Q Consensus 2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 73 (324)
..++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ ||+..||+.||..+|+..
T Consensus 35 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 35 KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 457788999999999999999999999999999999999997 9999999999 999999999999988653
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-15 Score=113.06 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=48.6
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcC
Q 020603 9 TSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76 (324)
Q Consensus 9 ~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikk 76 (324)
...+|.+..+|.+++|+||+|||++|+++|++||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 34578889999999999999999999999999998 699999999 7999999999974 5544443
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.50 E-value=2e-15 Score=122.91 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=65.2
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603 1 MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 1 m~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
|-.++..+|..+|.++.+|.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||..+++.
T Consensus 31 ~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 31 MITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence 3457888999999999999999999999999999999999997 8999999999 99999999999987764
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-15 Score=118.88 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=52.7
Q ss_pred cccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 69 YLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.+.|.+++++||+|||++|+++|.+||++|..||+.|+|||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988763
No 42
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.47 E-value=5.8e-15 Score=123.58 Aligned_cols=68 Identities=25% Similarity=0.434 Sum_probs=64.1
Q ss_pred CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603 2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
-.++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||..+++
T Consensus 41 ~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 41 PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFP-GRTDIHIKNRWVTISN 108 (126)
T ss_dssp TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999996 8999999999 9999999999998765
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.45 E-value=5.6e-14 Score=110.35 Aligned_cols=69 Identities=22% Similarity=0.446 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHH----hCCCCCcccccceeeccc-----cCCCcCC-CCCHHHHHHHHHHHhh
Q 020603 24 GPWTLEEDTLLIQYISRHSEGRWNLLAKR----SGLKRTGKSCRLRWLNYL-----KPDVKRG-NLTPQEQMSILELHSK 93 (324)
Q Consensus 24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~----l~~~Rt~~QCr~Rw~n~L-----~p~ikkg-~WT~EED~~Ll~lv~~ 93 (324)
++||+|||++|+++|++||.++|..|++. |+ +||+.||++||+++| .|.+++| +..++...+++.|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 77 999999999999988 5766665 5677777888888754
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=3e-14 Score=116.49 Aligned_cols=78 Identities=27% Similarity=0.554 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeeccc-----cCCCcCCCCCHHHHHH-
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYL-----KPDVKRGNLTPQEQMS- 86 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L-----~p~ikkg~WT~EED~~- 86 (324)
.....++++||+|||++|+++|++||.++|..|++.+ + +||..+|++||++++ .|.+++|.-+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4567899999999999999999999999999999965 5 899999999999999 6899999988888665
Q ss_pred HHHHHhhcC
Q 020603 87 ILELHSKWG 95 (324)
Q Consensus 87 Ll~lv~~~G 95 (324)
+++|+..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877655
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=2.4e-13 Score=104.31 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=47.3
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQ 122 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lk 122 (324)
+.+.+++||.|||++|++++.+|| ++|.+||++|||||..||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 689999999999999999999998764
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-13 Score=105.27 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY 69 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~ 69 (324)
.+....+++||+|||++|+++|++|| ++|.+||+.|+ +||..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 45567789999999999999999999 69999999999 99999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.37 E-value=3.8e-13 Score=104.59 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=45.0
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603 73 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 120 (324)
Q Consensus 73 ~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~ 120 (324)
...+++||+|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999864
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=109.73 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603 16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
...+.+++|+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3678999999999999999999999998 8999999999 99999999999998864
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=3.6e-13 Score=103.37 Aligned_cols=57 Identities=16% Similarity=0.364 Sum_probs=51.4
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeecccc
Q 020603 14 GENDSDQLRRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 14 ~~~~~~~lkkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
+..+.+...+++||+|||++|+++|.+||. .+|.+||+.|| |||.+||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445778899999999999999999999993 48999999999 9999999999998764
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=3.6e-12 Score=100.03 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHHH
Q 020603 77 GNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 77 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk~ 124 (324)
++||+|||++|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999999754
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=5.1e-12 Score=93.80 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=45.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCChHHHH---hhCCCCCHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWGNRWSKIA---QHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA---~~lpgRT~~qcknRW~~~lkk 123 (324)
++.+||+|||+.|++.|++||.+|..|+ .++++||..++|+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 467999999999999998764
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=6.5e-12 Score=105.01 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=49.8
Q ss_pred ccCCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHH
Q 020603 70 LKPDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 70 L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk 123 (324)
+.+..++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 556778999999999999999999996 99999997 4899999999999999984
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=1e-11 Score=101.54 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=47.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhC----CCCCHHHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQHL----PGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----pgRT~~qcknRW~~~lkk 123 (324)
+..++++||+|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999996 999999965 899999999999999874
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.22 E-value=3.7e-12 Score=117.14 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=48.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCCC------hHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWGNR------WSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcknRW~~~lkk~~r 126 (324)
+.+++++||+|||++|+++|++||++ |.+||++|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999975 99999999999999999999999998654
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=2e-11 Score=97.69 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999988764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.17 E-value=3.2e-11 Score=100.97 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=47.6
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk~ 124 (324)
...++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999996 99999996 48999999999999999653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.03 E-value=5.8e-11 Score=95.01 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhCCCCCcccccceeeccc
Q 020603 22 RRGPWTLEEDTLLIQYISRHS---EGRWNLLAKRSGLKRTGKSCRLRWLNYL 70 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G---~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L 70 (324)
.+++||.|||++|.+++.+|| ..+|.+||+.|| |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 468999999999999999997 347999999999 999999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.7e-10 Score=82.31 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 120 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~ 120 (324)
..++||+||++++++++.+||.+|..||..|++||..||..+|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999764
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.99 E-value=6e-10 Score=89.08 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=59.6
Q ss_pred ccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 020603 60 KSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHL-----PGRTDNEIKNYWRTRVQKQARHLK 129 (324)
Q Consensus 60 ~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----pgRT~~qcknRW~~~lkk~~r~~~ 129 (324)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4578899999976 89999999999999999999999999999 589999999999999988776653
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.85 E-value=7.3e-10 Score=82.20 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHH---HhCCCCCcccccceeecccc
Q 020603 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAK---RSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~---~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
..++++||+|||+.|+++|++||. +|..|+. ++. +||...+++||++..+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 348899999999999999999998 9999995 455 8999999999998764
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=3.8e-09 Score=80.69 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=44.6
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 73 DVKRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 73 ~ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..+.+.||.|||++|.+++.+|+ ++|.+||+.| |||..+|++||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34578999999999999999997 5699999998 99999999999987554
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.82 E-value=4.5e-09 Score=96.01 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=45.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..++||+||++++++++.+||++|..||+.+++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999976654
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=78.56 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY 69 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~ 69 (324)
++..-..++||+||++++.+++.+||. +|..||..|+ +|+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 445567799999999999999999996 9999999999 99999999998654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.62 E-value=1.2e-08 Score=77.89 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeecccc
Q 020603 20 QLRRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 20 ~lkkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
..+.+.||.|||++|.+++.+|+. .+|.+||+.+ ||+..||+.||..++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 456789999999999999999984 4799999998 4999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.57 E-value=3e-08 Score=99.44 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603 77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 120 (324)
Q Consensus 77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~ 120 (324)
..||+||-+++++++.+||.+|..||+.+..||..|||++|...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999753
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=7.5e-08 Score=73.70 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWRTRVQ 122 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~~~lk 122 (324)
...||.+|+++|.+++..|+. +|.+||..++|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 468999999999999999984 69999999999999999999998644
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=2.9e-08 Score=72.92 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChHHHHH-HhCCCCCcccccceeecccc
Q 020603 23 RGPWTLEEDTLLIQYISRH--------SEGRWNLLAK-RSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~--------G~~~W~~IA~-~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
|.+||+|||+.|++.|.+| |..-|+.+++ .++ ++|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6799999999999999999 5456999999 788 9999999999999875
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=4.7e-08 Score=74.84 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeeccccC
Q 020603 23 RGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
...||.+|+++|.+++..|+. ++|.+||..|| +|+..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 467999999999999999985 47999999999 89999999999887653
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.41 E-value=2.1e-07 Score=68.36 Aligned_cols=47 Identities=19% Similarity=0.385 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCC-hHHHHh-hCCCCCHHHHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKW--------GNR-WSKIAQ-HLPGRTDNEIKNYWRTRVQ 122 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~lpgRT~~qcknRW~~~lk 122 (324)
+.+||+|||.+|++.|.+| |++ |.++++ .++++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 433 999999 8999999999999987653
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.40 E-value=1.8e-07 Score=85.51 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
.......++||+||++++++++.+||. +|..||+.|+ +||..||+.+|.++.+
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344456789999999999999999996 9999999999 9999999999988764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.14 E-value=5.2e-06 Score=79.07 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccc-------eeecc--------------------------
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRL-------RWLNY-------------------------- 69 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~-------Rw~n~-------------------------- 69 (324)
-+.||..|...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999998 888877652 22110
Q ss_pred --------------c---cCCCcCCCCCHHHHHHHHHHHhhcCC----ChHHHHh------------hCCCCCHHHHHHH
Q 020603 70 --------------L---KPDVKRGNLTPQEQMSILELHSKWGN----RWSKIAQ------------HLPGRTDNEIKNY 116 (324)
Q Consensus 70 --------------L---~p~ikkg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~lpgRT~~qcknR 116 (324)
| -+..++..||++||..||-++.+||- .|..|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0 01224467999999999999999994 5999973 4468999999999
Q ss_pred HHHHHHHHHHh
Q 020603 117 WRTRVQKQARH 127 (324)
Q Consensus 117 W~~~lkk~~r~ 127 (324)
.+.+++-..+.
T Consensus 269 c~tLi~~iekE 279 (304)
T 1ofc_X 269 CNTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999875443
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=5.1e-06 Score=61.46 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCCChHHHHh-hCCCCCHHHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQ-HLPGRTDNEIKNYWRT 119 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcknRW~~ 119 (324)
|.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56777899999999999999999999999999 5899999999988864
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.09 E-value=7.6e-06 Score=64.79 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHhhcCC---ChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
-||.|||..||..+++-|. .|..||+.|.+|+.+||++||+.+++-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5999999999999999986 7999999999999999999999988763
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.97 E-value=1.7e-06 Score=66.04 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWR 118 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~ 118 (324)
.+.||.+|+++|..+..+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 6999999999999999999985
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=1e-06 Score=66.26 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHhhcCC---ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
-||.|||..|+..+++-|. .|..||+.| +|+++||.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 799999999 99999999999998765
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.96 E-value=2.3e-05 Score=62.44 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=51.2
Q ss_pred eeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHhc
Q 020603 65 RWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLP-----GRTDNEIKNYWRTRVQKQARHL 128 (324)
Q Consensus 65 Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lp-----gRT~~qcknRW~~~lkk~~r~~ 128 (324)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.++..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4445554 3689999999999999999999999999874 7999999999999888876654
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.96 E-value=8.4e-07 Score=67.77 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhCCCCCcccccceee
Q 020603 23 RGPWTLEEDTLLIQYISRHSEG---RWNLLAKRSGLKRTGKSCRLRWL 67 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~---~W~~IA~~l~~~Rt~~QCr~Rw~ 67 (324)
...||.+|+++|.+++.+|+.+ +|.+||..|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999864 7999999999 999999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=2.1e-05 Score=58.12 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhCCCCCcccccceeec
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAK-RSGLKRTGKSCRLRWLN 68 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~-~l~~~Rt~~QCr~Rw~n 68 (324)
..|.+....||+||-++..+++.+||. +|..|++ .|+ +|+..||...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 457788899999999999999999997 9999999 588 9999999887643
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.71 E-value=5.5e-05 Score=60.24 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT 119 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~ 119 (324)
...||+||.++..+++..||.+|..|+..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999998874
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.66 E-value=8.5e-05 Score=56.01 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHh-hCCCCCHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGNRWSKIAQ-HLPGRTDNEIKNYWRT 119 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcknRW~~ 119 (324)
...||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3589999999999999999999999999 5899999999999873
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.61 E-value=3.6e-05 Score=77.32 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY 69 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~ 69 (324)
+.......+||.||-+++++++.+||. +|..||+.|+ +|+..||+.+|.++
T Consensus 374 e~~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 374 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333456789999999999999999997 9999999999 99999999998764
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.58 E-value=3.7e-05 Score=61.35 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhC----CCCCcccccceeecccc
Q 020603 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG----LKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~----~~Rt~~QCr~Rw~n~L~ 71 (324)
...+||.||+..|++|+++|+- +|..|+..+. .+|+..++++||..+..
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 3499999999999999999997 9999999993 27999999999977543
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.33 E-value=4e-05 Score=59.48 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CChHHHHHHh---CCCCCcccccceeecccc
Q 020603 22 RRGPWTLEEDTLLIQYISRHSE---------GRWNLLAKRS---GLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~---------~~W~~IA~~l---~~~Rt~~QCr~Rw~n~L~ 71 (324)
+...||.+|-.+|+++...... ..|..||..| |..|++.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999976322 1599999886 568999999999988653
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.27 E-value=0.00022 Score=55.19 Aligned_cols=49 Identities=14% Similarity=0.399 Sum_probs=40.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCC----------ChHHHHhhCC----CCCHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWGN----------RWSKIAQHLP----GRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G~----------kWs~IA~~lp----gRT~~qcknRW~~~lkk 123 (324)
....||.+|-..||+++..+.. .|..||..|. .||+.||+.+|.++.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999975321 3999999873 69999999999996665
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.24 E-value=0.0013 Score=58.36 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCChHHHHHHhCC-CCCcccccc-------eeec---------------------
Q 020603 20 QLRRGPWTLEEDTLLIQYISRHS--EGRWNLLAKRSGL-KRTGKSCRL-------RWLN--------------------- 68 (324)
Q Consensus 20 ~lkkg~WT~EED~~L~~lV~k~G--~~~W~~IA~~l~~-~Rt~~QCr~-------Rw~n--------------------- 68 (324)
.-....||..|=..|++++.+|| .++|..|+....+ +|+...++. ++..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 34567899999999999999999 5689999875321 444433221 0000
Q ss_pred -----------------------ccc--------------------CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHh-
Q 020603 69 -----------------------YLK--------------------PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQ- 103 (324)
Q Consensus 69 -----------------------~L~--------------------p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~- 103 (324)
.|. +......||++||..|+..+.+|| ++|..|-.
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 000 000123599999999999999999 99999976
Q ss_pred -hC------------CCCCHHHHHHHHHHHHHH
Q 020603 104 -HL------------PGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 104 -~l------------pgRT~~qcknRW~~~lkk 123 (324)
.| ..++...+..|...+|+-
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 22 125577899998877765
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.20 E-value=0.00018 Score=57.25 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceee
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWL 67 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~ 67 (324)
...||+||.++..+++..||. +|..||+.|+ +|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 578999999999999999997 9999999999 999999998764
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.13 E-value=0.00024 Score=53.52 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhCCCCCcccccceee
Q 020603 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAK-RSGLKRTGKSCRLRWL 67 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~-~l~~~Rt~~QCr~Rw~ 67 (324)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4568999999999999999997 9999999 589 999999998764
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.04 E-value=0.0013 Score=64.06 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCccccc-------ceeecc---------------------------
Q 020603 24 GPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCR-------LRWLNY--------------------------- 69 (324)
Q Consensus 24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr-------~Rw~n~--------------------------- 69 (324)
+.||.-+=..++.++.+||..+-..||..|+.+++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999988999999995356665554 122111
Q ss_pred -------------c----cCC-CcCCCCCHHHHHHHHHHHhhcC----CChHHHHhh------------CCCCCHHHHHH
Q 020603 70 -------------L----KPD-VKRGNLTPQEQMSILELHSKWG----NRWSKIAQH------------LPGRTDNEIKN 115 (324)
Q Consensus 70 -------------L----~p~-ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------lpgRT~~qckn 115 (324)
| .+. .++..||++||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1345799999999999999999 569999443 35799999999
Q ss_pred HHHHHHHHHHHhc
Q 020603 116 YWRTRVQKQARHL 128 (324)
Q Consensus 116 RW~~~lkk~~r~~ 128 (324)
|...+++-..+..
T Consensus 284 Rc~tLi~~IeKE~ 296 (374)
T 2y9y_A 284 RGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998766553
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.0016 Score=51.61 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC--CChHHHHHHhCCCCCcccccceeecc
Q 020603 17 DSDQLRRGPWTLEEDTLLIQYISRHSE--GRWNLLAKRSGLKRTGKSCRLRWLNY 69 (324)
Q Consensus 17 ~~~~lkkg~WT~EED~~L~~lV~k~G~--~~W~~IA~~l~~~Rt~~QCr~Rw~n~ 69 (324)
.+.+-+--.||.|||..|+...++.|. ..|..||+.|+ +|+..|+++||+.+
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 455556678999999999999999875 46999999999 99999999999764
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.28 E-value=0.00067 Score=50.98 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChHHHHHHhCCCCCcccccceeecccc
Q 020603 22 RRGPWTLEEDTLLIQYISRHSE--GRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~--~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
.--.||.|||..|+..+++.|. .-|..||+.+ +|++.|+..||+.++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 4457999999999999999885 4699999988 4999999999988654
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.31 E-value=0.052 Score=40.24 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=41.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhC--CCCCHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWGNR---WSKIAQHL--PGRTDNEIKNYWRTRVQ 122 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--pgRT~~qcknRW~~~lk 122 (324)
.+-.||+|.-+..+++|.++|.. +..|-+.| +|.|..+|+.|.+.+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999955 88999986 78999999999886543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.16 E-value=0.014 Score=46.38 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhC----CCCCcccccceeeccc
Q 020603 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG----LKRTGKSCRLRWLNYL 70 (324)
Q Consensus 21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~----~~Rt~~QCr~Rw~n~L 70 (324)
|+...||.||...|++|+++|.- +|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999997 9999999874 2588888888887654
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.57 E-value=0.21 Score=43.97 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=41.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcC---CChHHHHhh--CCCCCHHHHHHHHHHHHHH
Q 020603 75 KRGNLTPQEQMSILELHSKWG---NRWSKIAQH--LPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 75 kkg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--lpgRT~~qcknRW~~~lkk 123 (324)
....||+.|-..|++++.+|| .+|..|++. |.+|+...|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999 689999874 7899999999887776654
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.23 E-value=0.2 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 77 GNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 77 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+.||..|...++.++.+||. +|..||..|+|+|..+|+.++.....+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999995 799999999999999998777665544
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.13 E-value=0.15 Score=47.61 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 020603 24 GPWTLEEDTLLIQYISRHSEGRWNLLAKR 52 (324)
Q Consensus 24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~ 52 (324)
..|+.+||..|+..|.+||.|+|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999853
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.48 E-value=0.28 Score=36.24 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=38.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--ChHHHHHHhCC-CCCcccccceeec
Q 020603 19 DQLRRGPWTLEEDTLLIQYISRHSEG--RWNLLAKRSGL-KRTGKSCRLRWLN 68 (324)
Q Consensus 19 ~~lkkg~WT~EED~~L~~lV~k~G~~--~W~~IA~~l~~-~Rt~~QCr~Rw~n 68 (324)
....+-.||+|..++.+++|+..|.. -+..|.+.|+. +.|..++..|.+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567899999999999999999953 28899999863 4577777655443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.95 E-value=2.3 Score=39.54 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CChHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWG---NRWSKIAQ--HLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~lpgRT~~qcknRW~~~lkk 123 (324)
++.||+.|-..|++.+.+|| .+|..|+. .|+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999977 57899999999888876654
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=72.33 E-value=2 Score=35.30 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCCc----ccccceeeccccCCCcCCCCCHHHHHHHHHHHh
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRTG----KSCRLRWLNYLKPDVKRGNLTPQEQMSILELHS 92 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt~----~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~ 92 (324)
+|..+|.+.|. +.|.+||..|++..+. ...|..|.++|.+- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 34555555553 3699999999865433 35678888888762 2488899888887664
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=70.48 E-value=3.9 Score=39.75 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhC
Q 020603 22 RRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSG 54 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~ 54 (324)
++..||.+||..|+-++.+||- ++|.+|-..+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir 262 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIR 262 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 5668999999999999999998 89999987653
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=67.72 E-value=6 Score=34.29 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCCCCCCCCHHHHHHH--------HHHHHHhCCCChHHHHH
Q 020603 18 SDQLRRGPWTLEEDTLL--------IQYISRHSEGRWNLLAK 51 (324)
Q Consensus 18 ~~~lkkg~WT~EED~~L--------~~lV~k~G~~~W~~IA~ 51 (324)
-|.-.+|-||+|+|+.| .++++||| |..|..
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 35678999999999987 56888898 455543
No 101
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.65 E-value=11 Score=26.08 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 79 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+++ .+..++.++-..|-.+.+||+.| |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 454 44555666667788999999999 88999999887765554
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.64 E-value=10 Score=29.70 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCCC----HHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGRT----DNEIKNYWRTRVQKQ 124 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgRT----~~qcknRW~~~lkk~ 124 (324)
+|..+|.+.|+ .|.+|++.|.--. ..++|..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888884 6999999983322 578899999888774
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=64.82 E-value=8.9 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCCC----HHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGRT----DNEIKNYWRTRVQKQ 124 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgRT----~~qcknRW~~~lkk~ 124 (324)
+|..+|.+.|+ .|.+|++.|.--. ...+|..|..+|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 58888888884 6999999983222 568899999988873
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.63 E-value=5 Score=32.28 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgRT~~qcknRW~~~lkk~~ 125 (324)
+|..+|.+.|+ .|.+|++.|.--....+|..|..+|.+--
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 48888888884 69999998844448899999999887743
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=64.59 E-value=6.6 Score=32.09 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgRT~~qcknRW~~~lkk~~r 126 (324)
+|..+|.+.|+ .|.+|++.|.--....+|..|..+|.+--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 38888888885 499999988444489999999999988544
No 106
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.96 E-value=14 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhh----cCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 79 LTPQEQMSILELHSK----WGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 79 WT~EED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
.++.|-+. +.+.-- .|-.+.+||+.| |-+...|+.+....+++-
T Consensus 11 L~~~er~i-l~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREAMV-LKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHHHH-HHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 45555544 444443 577899999999 999999999887766553
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.14 E-value=2.8 Score=33.75 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCCcccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|..||..|++.. +..++..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46777777764 37999999998544 77788888888765
No 108
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.35 E-value=12 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=29.7
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCC--C--HHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGR--T--DNEIKNYWRTRVQKQ 124 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgR--T--~~qcknRW~~~lkk~ 124 (324)
+|..+|.+.|+ .|.+|++.|.-. + ...+|..|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47888888884 699999988322 1 468899999888773
No 109
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=60.99 E-value=19 Score=29.17 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCC--------ChHHHHhhC--CCC---CHHHHHHHHHHHHHHHHHh
Q 020603 85 MSILELHSKWGN--------RWSKIAQHL--PGR---TDNEIKNYWRTRVQKQARH 127 (324)
Q Consensus 85 ~~Ll~lv~~~G~--------kWs~IA~~l--pgR---T~~qcknRW~~~lkk~~r~ 127 (324)
-+|..+|.+.|+ .|.+|++.| +.. ....+|..|..+|.+--..
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~ 110 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECE 110 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 358888888885 699999988 222 2678999999999875443
No 110
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=60.82 E-value=12 Score=30.39 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCCCC----HHHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPGRT----DNEIKNYWRTRVQKQA 125 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpgRT----~~qcknRW~~~lkk~~ 125 (324)
+|..+|.+.|+ .|.+|++.|.--+ ..++|..|..+|.+--
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 48888888884 6999999883222 5688999999888743
No 111
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=58.17 E-value=4.5 Score=31.93 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC----cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT----GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt----~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777763 379999999985442 35677888888865
No 112
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=57.92 E-value=23 Score=29.46 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCC--CC---CHHHHHHHHHHHHHHHHHh
Q 020603 86 SILELHSKWGN--------RWSKIAQHLP--GR---TDNEIKNYWRTRVQKQARH 127 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lp--gR---T~~qcknRW~~~lkk~~r~ 127 (324)
+|..+|.+.|+ .|.+|++.|. .. ....+|..|..+|.+--..
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 48888888885 6999999882 22 2678999999998875444
No 113
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.91 E-value=15 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHh----hcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 79 LTPQEQMSILELHS----KWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 79 WT~EED~~Ll~lv~----~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
.++.|-+ ++.+.- ..|-.+.+||+.| |-+...|+.+....+++
T Consensus 6 L~~~er~-il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 6 LTAREAK-VLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCHHHHH-HHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred CCHHHHH-HHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444 444444 3477899999999 99999999987765544
No 114
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=56.71 E-value=43 Score=26.23 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCChHHHHhhCCCCCHHHHHH----------HHHHHHHHHHHhcCCCCCChhHHHHHhhh
Q 020603 84 QMSILELHSKWGNRWSKIAQHLPGRTDNEIKN----------YWRTRVQKQARHLKIDANSTTFQEIIRCF 144 (324)
Q Consensus 84 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qckn----------RW~~~lkk~~r~~~~~~~s~~~~~iir~~ 144 (324)
+..|..+....|..|..+|+.| |=+..+|.. +-..+|+.=..+.|....-..+...++..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~ 87 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKS 87 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHc
Confidence 3445566677799999999999 666666543 33444554444444444444455544443
No 115
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=55.37 E-value=4.2 Score=32.83 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC---cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT---GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+.|..|.++|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777877774 379999999986443 34567777777754
No 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=54.44 E-value=9.8 Score=31.82 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=36.0
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC----cccccceeeccccC--CCcCCCCCHHHHHHHH
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT----GKSCRLRWLNYLKP--DVKRGNLTPQEQMSIL 88 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt----~~QCr~Rw~n~L~p--~ikkg~WT~EED~~Ll 88 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+++..|.++|.+ ...+|.=.++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 46667777664 379999999986442 34677888888876 3344554555544433
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=53.33 E-value=4.4 Score=33.12 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC----cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT----GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt----~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+.+..|.++|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777764 379999999986443 34567778888765
No 118
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=51.68 E-value=19 Score=29.27 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHHHHhhcCC--------ChHHHHhhC--CCC---CHHHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHL--PGR---TDNEIKNYWRTRVQKQA 125 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~l--pgR---T~~qcknRW~~~lkk~~ 125 (324)
+|..+|.+.|+ .|.+||..| |.- ....+|..|..+|-+--
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 48888888885 699999988 321 25688999998888743
No 119
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=51.66 E-value=9.1 Score=29.71 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCC-------cCCCCCHHHHHHHH
Q 020603 31 DTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDV-------KRGNLTPQEQMSIL 88 (324)
Q Consensus 31 D~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~i-------kkg~WT~EED~~Ll 88 (324)
+.+|.+||+.|| |..++..+. ..|.. .+|.+ ++.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999998 999999987 33432 34543 56789888877654
No 120
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=51.65 E-value=5.3 Score=30.80 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC---cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT---GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+|++.|++..+ +.+.+..|.++|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666666653 379999999985442 23566777777653
No 121
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=51.33 E-value=8.7 Score=29.55 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCC---C-CHHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPG---R-TDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpg---R-T~~qcknRW~~~lkk~ 124 (324)
+|..+|.+.|+ .|.+|++.|.- - ...++|..|..+|.+-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 37778887774 69999998732 1 2568888888877663
No 122
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.95 E-value=33 Score=25.40 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 82 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+.+..++.++...|-.-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556666667788899999999 89999999887765554
No 123
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.92 E-value=5.2 Score=32.59 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC---cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT---GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777664 379999999986542 24566777777654
No 124
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.29 E-value=5.5 Score=31.32 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC---cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT---GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++..+ +.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777764 379999999985442 24566667666643
No 125
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.78 E-value=6.8 Score=31.81 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCC---cccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRT---GKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+|+..|++..+ +.+.|..|.++|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777764 379999999985442 23556667666643
No 126
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.73 E-value=50 Score=23.17 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 79 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+|+.|-+.| .++ ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 566665554 445 5678899999999 88999999887765544
No 127
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.26 E-value=53 Score=26.75 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=24.7
Q ss_pred hcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 93 KWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 93 ~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|-...+||+.| |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 89999999988776655
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=42.07 E-value=58 Score=24.40 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
....|+.|-+.|.-++ .|..-.+||+.| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3468888887766554 788899999999 89999999988776554
No 129
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.00 E-value=18 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=28.4
Q ss_pred HHHHHHhhcCC--------ChHHHHhhCCC--C---CHHHHHHHHHHHHHH
Q 020603 86 SILELHSKWGN--------RWSKIAQHLPG--R---TDNEIKNYWRTRVQK 123 (324)
Q Consensus 86 ~Ll~lv~~~G~--------kWs~IA~~lpg--R---T~~qcknRW~~~lkk 123 (324)
+|..+|.+.|+ .|.+|++.|.- . ...++|..|..+|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47888888883 69999998832 1 246789999887765
No 130
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.62 E-value=49 Score=24.31 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhh----cCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 79 LTPQEQMSILELHSK----WGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 79 WT~EED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
-++.|-+ ++.+.-- .|-.+.+||..| |-+...|+.+-...+++
T Consensus 19 L~~~er~-vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 19 LSPREAM-VLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3444444 4444443 567899999999 99999999987765554
No 131
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.44 E-value=1.4e+02 Score=23.55 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc------ccCCCc----CCCCCHHHHHHHHHHHh
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY------LKPDVK----RGNLTPQEQMSILELHS 92 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~------L~p~ik----kg~WT~EED~~Ll~lv~ 92 (324)
....|.++-..++.++. .|. .-.+||+.++.. ...+ .||.+. +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgis--~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRVS--HGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTCC--HHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcC--HHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789999888888884 554 789999999843 2222 233221 222212 23478888888888876
Q ss_pred hc
Q 020603 93 KW 94 (324)
Q Consensus 93 ~~ 94 (324)
+.
T Consensus 105 ~~ 106 (149)
T 1k78_A 105 QN 106 (149)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 132
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.13 E-value=95 Score=24.19 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHH-----------HHHHHHHHHHHhcCCCCCChhHHHHHhhhccch
Q 020603 80 TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKN-----------YWRTRVQKQARHLKIDANSTTFQEIIRCFWMPR 148 (324)
Q Consensus 80 T~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qckn-----------RW~~~lkk~~r~~~~~~~s~~~~~iir~~~~p~ 148 (324)
++.-+..|..+....|..|..+|+.| |=+..+|.. +-..+|+.=..+.+.......+...++..-..-
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~d 92 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGE 92 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcHH
Confidence 55667788888899999999999999 777665533 233445444444454454445555555443344
Q ss_pred hhhhc
Q 020603 149 LLQKM 153 (324)
Q Consensus 149 l~~k~ 153 (324)
+..++
T Consensus 93 iae~l 97 (111)
T 2yqf_A 93 IVNML 97 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.61 E-value=85 Score=21.49 Aligned_cols=44 Identities=20% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..+|+.|-+.|.. + ..|..-.+||+.| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766655 4 5677899999999 88999999887765544
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.17 E-value=64 Score=23.43 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 477777666554 4 5688899999999 89999999887765544
No 135
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=36.83 E-value=4.3 Score=33.22 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhCCCCCcccccceeeccccC
Q 020603 33 LLIQYISRHSE-------GRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 33 ~L~~lV~k~G~-------~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
+|..+|.+.|. +.|.+||..|++.. +...+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 45666666653 26999999998544 66677777776654
No 136
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.49 E-value=65 Score=24.12 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 477777666554 4 6788899999999 88999999987765544
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.22 E-value=56 Score=22.70 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 020603 81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 131 (324)
Q Consensus 81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~ 131 (324)
.-|.+.|.++..+++++..+.|+.| |=+... |.+++++.++.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~t--------L~rklkk~gi~ 59 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSN--------LYRKIKSLNIR 59 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHH--------HHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHH--------HHHHHHHhCCC
Confidence 3477888999999999999999988 444433 34445555554
No 138
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.81 E-value=54 Score=26.91 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125 (324)
Q Consensus 82 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~~ 125 (324)
+-|.+|+++.++-| -.|.+||+.+ |=+...|+.|.+.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45788888888776 4699999999 9999999999998776643
No 139
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=34.50 E-value=20 Score=30.02 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHH
Q 020603 47 NLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILE 89 (324)
Q Consensus 47 ~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~ 89 (324)
..||..+. |++..+||..+. + ...||+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 67888888 899999998652 2 23599999988765
No 140
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=34.35 E-value=65 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHH
Q 020603 81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNY 116 (324)
Q Consensus 81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknR 116 (324)
.-|...|.++..++|++..+.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3577888999999999999999998 6666555443
No 141
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.20 E-value=85 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 83 EQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 83 ED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
.+..++.++...|-...+||+.| |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44455666667788999999999 88999998887765444
No 142
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.97 E-value=33 Score=23.95 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhCCCCCc
Q 020603 29 EEDTLLIQYISRHSEGRWNLLAKRSGLKRTG 59 (324)
Q Consensus 29 EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~ 59 (324)
-|.+.|.+++..++. +..+.|+.+|..|+.
T Consensus 19 ~E~~~i~~aL~~~~g-n~~~aA~~LGisr~t 48 (63)
T 3e7l_A 19 FEKIFIEEKLREYDY-DLKRTAEEIGIDLSN 48 (63)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHCcCHHH
Confidence 477788888888884 999999999966543
No 143
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.38 E-value=15 Score=30.42 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603 29 EEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72 (324)
Q Consensus 29 EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p 72 (324)
+-|.+|++++.+.|.-.|.+||+.++ -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45788889999888889999999998 4666677666555433
No 144
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.80 E-value=1e+02 Score=25.74 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=26.6
Q ss_pred HHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 87 ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 87 Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
++.++-..|-...+||+.| |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3334334567899999999 89999998887765554
No 145
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.08 E-value=91 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=23.9
Q ss_pred hcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 93 KWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 93 ~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|-...+||+.| |-+...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567799999999 88999998887765544
No 146
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.06 E-value=91 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 84 QMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 84 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
+..++.++ ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34455553 5577889999999 88999999987765544
No 147
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.77 E-value=34 Score=27.80 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=24.0
Q ss_pred hcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 93 KWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 93 ~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|-...+||+.| |-+...|+.+....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 88999999988876655
No 148
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.73 E-value=1.9e+02 Score=22.11 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCccccc---ceeeccc--cCCCcCCCCCHHHHHHHHHHHhhcCCC
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCR---LRWLNYL--KPDVKRGNLTPQEQMSILELHSKWGNR 97 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr---~Rw~n~L--~p~ikkg~WT~EED~~Ll~lv~~~G~k 97 (324)
....|.++-..++.++. .|. .-.+||+.++.. ...++ .+|...- ...-.....+++++..|+++...-+-.
T Consensus 4 ~~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgis--~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 4 GSALSDTERAQLDVMKL-LNV-SLHEMSRKISRS--RHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp SCCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTCC--HHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred cccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcC--HHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 35678888888877774 454 689999999843 33232 2332211 111122357888888888773332233
Q ss_pred hHHHHhhCCC--CCHHHHHH
Q 020603 98 WSKIAQHLPG--RTDNEIKN 115 (324)
Q Consensus 98 Ws~IA~~lpg--RT~~qckn 115 (324)
=.+|+..| | -+...|..
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 46777777 4 45555544
No 149
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.49 E-value=64 Score=25.64 Aligned_cols=30 Identities=30% Similarity=0.621 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcCCChHHHHhhCCCCCHHHHH
Q 020603 84 QMSILELHSKWGNRWSKIAQHLPGRTDNEIK 114 (324)
Q Consensus 84 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qck 114 (324)
|..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 3567777899999999999999 66665553
No 150
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=28.79 E-value=44 Score=28.85 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.4
Q ss_pred CCCcCCCCCHHHHHHHH
Q 020603 72 PDVKRGNLTPQEQMSIL 88 (324)
Q Consensus 72 p~ikkg~WT~EED~~Ll 88 (324)
|.-..|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999887
No 151
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.21 E-value=1.3e+02 Score=22.92 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
....|+.|-+.|.-++ .|-.-.+||+.| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3467888887765433 588899999999 88999999887765544
No 152
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=26.69 E-value=1.2e+02 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHH
Q 020603 81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKN 115 (324)
Q Consensus 81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qckn 115 (324)
.+|-++|+. ....|.+|..+|+.| |=+...|+.
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~ 37 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVET 37 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHH
Confidence 366677888 466689999999999 777777665
No 153
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.40 E-value=76 Score=25.28 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=25.9
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHH
Q 020603 73 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIK 114 (324)
Q Consensus 73 ~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qck 114 (324)
.+-...=|.+ .|..+....|..|..+|+.| |=+..+|.
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3344445555 45556788999999999998 66665553
No 154
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.37 E-value=81 Score=23.15 Aligned_cols=43 Identities=23% Similarity=0.074 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777666654 4 5688899999999 88999999887765444
No 155
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.16 E-value=1.4e+02 Score=23.74 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125 (324)
Q Consensus 82 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~~ 125 (324)
+-|..|+.+.++.| -.+.+||+.+ |=+...|+.|.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44566777777766 4699999999 8899999999988766643
No 156
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=26.09 E-value=80 Score=25.17 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=24.7
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHH
Q 020603 74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEI 113 (324)
Q Consensus 74 ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qc 113 (324)
+-...=|.+ .|..+....|..|..+|+.| |=+..+|
T Consensus 17 ~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp GGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred hccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 333444555 35556788999999999998 6565554
No 157
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.55 E-value=1.9e+02 Score=22.65 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHH
Q 020603 76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNY 116 (324)
Q Consensus 76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknR 116 (324)
....+.++-..++.++. -|..-.+||+.| |.+...|+.-
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw 68 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKI 68 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHH
Confidence 34789999999999885 577899999999 7787777653
No 158
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.38 E-value=30 Score=29.32 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.9
Q ss_pred hHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHH
Q 020603 46 WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILE 89 (324)
Q Consensus 46 W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~ 89 (324)
=..||..+. |++..+.|..|. + ..-||+||++.+.+
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 477888898 999999998652 2 23599999998753
No 159
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.00 E-value=2.6e+02 Score=22.23 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCc-ccccceeecc--ccCCCc----CCCCCHHHHHHHHHHHhhc
Q 020603 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTG-KSCRLRWLNY--LKPDVK----RGNLTPQEQMSILELHSKW 94 (324)
Q Consensus 23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~-~QCr~Rw~n~--L~p~ik----kg~WT~EED~~Ll~lv~~~ 94 (324)
..+.|.++-..++.++. .|. .-.+||+.++..|+. .....||... +.+... ....++++.+.|++++.+.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 34788998888888885 454 789999999843322 1112233221 222211 2347877788888877653
No 160
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=23.79 E-value=32 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHH
Q 020603 47 NLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILE 89 (324)
Q Consensus 47 ~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~ 89 (324)
..||..+. |++..+||..|. + ...+|+||++.+.+
T Consensus 120 ~~va~~i~-gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 56888888 899999999762 2 23599999988764
No 161
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.70 E-value=83 Score=23.58 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHH
Q 020603 81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIK 114 (324)
Q Consensus 81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qck 114 (324)
+-|.+.|.++..+++++..+.|+.| |=+...+.
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLy 72 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHH
Confidence 4567788899999999999999988 55554443
No 162
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.57 E-value=1.3e+02 Score=18.20 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW 117 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW 117 (324)
..++++-..++.++ .-|-...+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777776 3477899999999 77877776543
No 163
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=23.56 E-value=1.5e+02 Score=23.53 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhc
Q 020603 22 RRGPWTLEEDTLLIQYISRHSEGR--WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKW 94 (324)
Q Consensus 22 kkg~WT~EED~~L~~lV~k~G~~~--W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~ 94 (324)
+-.++++++-..|++.....+... -.+|+..+| .+....|. |-|...+...++||-+.|++.+.+|
T Consensus 43 ~Fsk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P--~~~dElra-----li~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 43 SVEKCDAESAQKVVEELSSIISREDVRAVLASICP--ITPDEVRS-----ILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCC--CSSCCCCT-----TTTTTCCCCCCCTHHHHHHHHC---
T ss_pred HHcCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCHHHHHH-----HHHhhccCCCCHHHHHHHHHHHHHH
Confidence 446788988888888776665422 566777778 56665553 3355556678999999999999887
No 164
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.76 E-value=1.2e+02 Score=25.11 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124 (324)
Q Consensus 82 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~ 124 (324)
+-|.+|+++.++.| -.+.+||+.+ |-+...|+.|.+.+.+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 45667777777766 4699999999 889999999998776554
No 165
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.76 E-value=1.4e+02 Score=23.21 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603 78 NLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123 (324)
Q Consensus 78 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk 123 (324)
.+++.+- .++.++...|-.-.+||+.+ |-+...|+.+....+++
T Consensus 22 ~L~~~~r-~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 22 LLTDKQM-NYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp GSCHHHH-HHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3555554 45556566788899999999 99999999887765544
No 166
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.34 E-value=1.6e+02 Score=23.49 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603 82 QEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125 (324)
Q Consensus 82 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~~ 125 (324)
+-|..|+.+..+.| -.+.+||+.+ |-+...|+.|.+.+....+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34566777777766 4699999999 8899999999988766643
No 167
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.18 E-value=47 Score=27.85 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603 29 EEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK 71 (324)
Q Consensus 29 EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~ 71 (324)
+-|.+|++++.+.+...+.+||+.++ -+...|+.|......
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 45677888888888779999999998 466667765555433
No 168
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.73 E-value=83 Score=21.77 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCc
Q 020603 25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTG 59 (324)
Q Consensus 25 ~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~ 59 (324)
....-|.+.|.++++++ ++-.+.|+.+|..|+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~t 49 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHTA 49 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHHH
Confidence 35567888899999998 4899999999976653
No 169
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.53 E-value=63 Score=24.17 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhCCCCCc
Q 020603 29 EEDTLLIQYISRHSEGRWNLLAKRSGLKRTG 59 (324)
Q Consensus 29 EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~ 59 (324)
-|.+.|.+++++++. +..+.|+.+|..|+.
T Consensus 51 ~E~~~i~~aL~~~~g-n~~~aA~~LGIsr~t 80 (91)
T 1ntc_A 51 LERTLLTTALRHTQG-HKQEAARLLGWGAAT 80 (91)
T ss_dssp HHHHHHHHHHHHTTT-CTTHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHCcCHHH
Confidence 467778888888874 899999999976653
Done!